Query psy4197
Match_columns 124
No_of_seqs 59 out of 61
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 19:19:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c0t_A Mediator of RNA polymer 100.0 1E-34 3.5E-39 229.3 13.5 110 5-114 89-206 (207)
2 2hzm_B RNA polymerase II media 99.9 1.1E-25 3.7E-30 186.6 11.1 107 5-115 174-292 (317)
3 3ghx_A Adenylate cyclase CYAB; 90.7 1.3 4.3E-05 32.7 7.9 69 21-104 91-161 (179)
4 3n10_A Adenylate cyclase 2; CY 80.0 10 0.00035 27.2 7.9 72 18-104 88-161 (179)
5 1yem_A Hypothetical protein; s 77.4 16 0.00056 26.7 8.5 69 21-105 88-156 (179)
6 2aca_A Putative adenylate cycl 59.9 47 0.0016 24.1 9.1 69 21-104 93-163 (189)
7 2dc4_A PH1012 protein, 165AA l 43.1 82 0.0028 21.9 8.6 79 11-105 68-148 (165)
8 2een_A Hypothetical protein PH 41.6 92 0.0031 22.1 10.0 79 13-106 78-162 (183)
9 2k5l_A FEOA; structure, NESG, 36.2 38 0.0013 21.4 3.5 38 18-55 18-55 (81)
10 2k4y_A FEOA-like protein; GFT 35.3 43 0.0015 21.4 3.6 38 18-55 21-58 (86)
11 3ado_A Lambda-crystallin; L-gu 30.3 47 0.0016 26.6 3.8 35 73-108 149-185 (319)
12 2do0_A HnRNP M, heterogeneous 30.1 52 0.0018 20.8 3.4 43 5-47 13-61 (114)
13 3fov_A UPF0102 protein RPA0323 29.7 69 0.0024 22.9 4.3 30 23-56 29-58 (134)
14 2pb9_A Phosphomethylpyrimidine 29.3 34 0.0012 26.1 2.7 25 11-35 91-119 (195)
15 2gcx_A FEOA, ferrous iron tran 26.6 49 0.0017 20.2 2.7 35 21-55 19-53 (75)
16 1a1d_A RNA polymerase; RPB8, O 26.3 48 0.0016 24.4 2.9 22 35-56 91-117 (146)
17 1x5s_A Cold-inducible RNA-bind 25.9 55 0.0019 20.3 2.9 38 3-40 8-45 (102)
18 2hzc_A Splicing factor U2AF 65 25.5 37 0.0013 20.3 1.9 30 2-31 1-30 (87)
19 3mhx_A Putative ferrous iron t 24.4 75 0.0026 20.0 3.3 37 19-55 22-59 (85)
20 2dgv_A HnRNP M, heterogeneous 24.1 90 0.0031 18.8 3.6 36 5-40 6-41 (92)
21 2k5f_A Ferrous iron transport 23.8 80 0.0027 21.2 3.5 25 18-42 17-41 (105)
22 2cqh_A IGF-II mRNA-binding pro 23.7 68 0.0023 19.5 3.0 44 4-47 5-49 (93)
23 2fcr_A Flavodoxin; electron tr 23.6 34 0.0012 23.8 1.6 64 23-108 108-171 (173)
24 2h3j_A Hypothetical protein PA 22.1 58 0.002 19.7 2.4 21 21-41 20-40 (75)
25 1qsm_A HPA2 histone acetyltran 21.8 83 0.0028 19.3 3.1 17 23-39 130-146 (152)
26 2oba_A Probable 6-pyruvoyl tet 21.7 18 0.00062 25.8 -0.1 75 41-118 11-91 (138)
27 3qb8_A A654L protein; GNAT N-a 21.2 55 0.0019 21.5 2.2 31 20-50 149-179 (197)
28 2qn6_B Translation initiation 20.6 57 0.002 21.9 2.2 23 77-99 7-29 (93)
29 3bs9_A Nucleolysin TIA-1 isofo 20.3 86 0.0029 18.6 2.9 37 5-41 4-40 (87)
30 1jr5_A 10 kDa anti-sigma facto 20.2 36 0.0012 23.4 1.1 14 22-35 31-44 (90)
No 1
>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-34 Score=229.26 Aligned_cols=110 Identities=15% Similarity=0.259 Sum_probs=98.9
Q ss_pred CCCCceeeeeeeE-eeccccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCcc--CCceEEE
Q psy4197 5 DKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPI--SQSYLVE 81 (124)
Q Consensus 5 d~~~~~lVRs~vd-v~~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~--s~s~LVE 81 (124)
|++|||++|++++ +.+|+|+++|+++||||+||||+.+||+|++|+|||++++|++..+|....-+..++ |+|||||
T Consensus 89 ~~~~~~~~R~~~~a~~~sgdv~~fl~~lG~~~~~EYv~~G~~f~~g~~kI~l~ril~~~~p~~~~pp~~pLd~S~sylle 168 (207)
T 3c0t_A 89 KREDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYFFFDTTVRIYQTLIPSQQRSIKPPFHPMNEEQPWILH 168 (207)
T ss_dssp SCTTSCEEEEEEEEEECSSCHHHHHHHTTEEEEEEEEEEEEEEEETTEEEEEEEEEEESSTTCCSSCEEESSTTCCEEEE
T ss_pred CCcCceEEEEeecccccCCCHHHHHHHhCcceEEEEEEeeeEEEeCCEEEEEEeeecCCCCCccCCCccccccCcceEEE
Confidence 6788999999999 999999999999999999999999999999999999999999933333111122388 9999999
Q ss_pred EEeeCCCCCch-----HHHHHHHHHHhcccceeeecCC
Q psy4197 82 LSILAPGGQDV-----IGEDMKAFAEQLKPLVQLEKID 114 (124)
Q Consensus 82 iSvlap~~~d~-----~a~~ir~FAE~L~Plv~L~K~d 114 (124)
+||++|+++|. .+++|+.|||||+|+|+|+|+|
T Consensus 169 ~sv~v~d~~d~~~m~~~~~~L~~f~eqLk~~V~Lek~~ 206 (207)
T 3c0t_A 169 VYTHVADASNQVAMAKAEANLTKVKTLLSAFCDLKNVR 206 (207)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHHHTTTCCCBCCC
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 99999999999 6999999999999999999998
No 2
>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_B 3rj1_E
Probab=99.93 E-value=1.1e-25 Score=186.59 Aligned_cols=107 Identities=19% Similarity=0.366 Sum_probs=95.8
Q ss_pred CCCCceeeeeeeE--eeccc----cHHHHHHHhCcceeeEEEEeeeeEe-eeeeEEEEEEeeeecCCCCCCCCCCccCCc
Q psy4197 5 DKARPTIVRSSID--VACSC----TVVEFLTEMGCRMDFEYISRGYMFR-KGRMKILVSKIFKMSQGKPSDSGVEPISQS 77 (124)
Q Consensus 5 d~~~~~lVRs~vd--v~~S~----n~~~Fl~~LGfr~D~Eyl~~G~~f~-kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s 77 (124)
+++|+|.+|++++ +.+|+ +++.||++|||++||||+.+||+|+ ||+|+|++++|+++...+.+ .+.+++
T Consensus 174 gknr~Vt~R~i~eS~l~~s~~~~~svl~FL~eLGY~fd~EYV~kG~~F~~kgdI~I~L~KI~~~~~~~~~----~d~Sgs 249 (317)
T 2hzm_B 174 GNNRSVSMQTIAETIILSSAGKNSSVSSLMNGLGYVFEFQYLTIGVKFFMKHGLILELQKIWQIEEAGNS----QITSGG 249 (317)
T ss_dssp ---CCSEEEEEEEEEEEEEEETTCSHHHHHHHTTEEEEEEEEEEEEEEECGGGCEEEEEEEEEEETTEEE----ETTTTE
T ss_pred CCCCceEEEEEEeeeeecCCCCcccHHHHHHHcCCceeEEEEEEEEEEEEcCCEEEEEEEEEeeCCCCCC----CCCCCc
Confidence 3779999999999 66788 9999999999999999999999999 79999999999998754322 377999
Q ss_pred eEEEEEeeCCCCCch-----HHHHHHHHHHhcccceeeecCCc
Q psy4197 78 YLVELSILAPGGQDV-----IGEDMKAFAEQLKPLVQLEKIDY 115 (124)
Q Consensus 78 ~LVEiSvlap~~~d~-----~a~~ir~FAE~L~Plv~L~K~d~ 115 (124)
||||+||.+|.++|. .+++|+.|+|||+|+|+|+|+|=
T Consensus 250 ylLkasV~V~~~tD~d~i~~as~eL~~LkeqLkglVeLE~pDR 292 (317)
T 2hzm_B 250 FLLKAYINVSRGTDIDRINYTETVLMNLKKELQGYIELSVPDR 292 (317)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTTCCCBCCCH
T ss_pred eEEEEEEEecCCCCHHHHHHHHHHHHHHHHHhhhhcceeccch
Confidence 999999999999987 69999999999999999999994
No 3
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=90.71 E-value=1.3 Score=32.72 Aligned_cols=69 Identities=17% Similarity=0.361 Sum_probs=55.1
Q ss_pred cccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCCCC--chHHHHHH
Q psy4197 21 SCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQ--DVIGEDMK 98 (124)
Q Consensus 21 S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~~~--d~~a~~ir 98 (124)
..++...|..|||..-..+-.....|..+..+|++..+-.. + ..|||=+.+++.. +...+.+.
T Consensus 91 ~~~~~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v~gl--------------G-~f~EIE~~~~d~~~~~~~~~~i~ 155 (179)
T 3ghx_A 91 VSKVQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGL--------------G-DFAEIAIMTDDATELDKLKAECR 155 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTT--------------E-EEEEEEEEESCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEccCCC--------------c-cEEEEEEEcCChhhHHHHHHHHH
Confidence 45788999999999999999999999999999998875321 1 5679988887654 44567788
Q ss_pred HHHHhc
Q psy4197 99 AFAEQL 104 (124)
Q Consensus 99 ~FAE~L 104 (124)
.++.+|
T Consensus 156 ~l~~~L 161 (179)
T 3ghx_A 156 DFANTF 161 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 888876
No 4
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=79.98 E-value=10 Score=27.20 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=55.9
Q ss_pred eeccccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCCCC--chHHH
Q psy4197 18 VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQ--DVIGE 95 (124)
Q Consensus 18 v~~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~~~--d~~a~ 95 (124)
+.-.+++...|..+||+.-+.+-..-..|+-+.+.|++..+.. . -..+||=+.+.++. +...+
T Consensus 88 v~~~~~~~~~l~~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~---l------------G~f~EiE~e~~~~~~~~~~~~ 152 (179)
T 3n10_A 88 IEDVSKVQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTG---L------------GDFAEIAIMTDDATELDKLKA 152 (179)
T ss_dssp CSCHHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETT---T------------EEEEEEEEEESCGGGHHHHHH
T ss_pred cCCHHHHHHHHHhCCCeEEEEEEEEEEEEEECCEEEEEEeccC---C------------CcEEEEEEEeCCCccHHHHHH
Confidence 4445679999999999999999999999999999888876531 1 14678887776654 45677
Q ss_pred HHHHHHHhc
Q psy4197 96 DMKAFAEQL 104 (124)
Q Consensus 96 ~ir~FAE~L 104 (124)
.+..+|.+|
T Consensus 153 ~~~~l~~~L 161 (179)
T 3n10_A 153 ECRDFANTF 161 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 788888877
No 5
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=77.45 E-value=16 Score=26.67 Aligned_cols=69 Identities=13% Similarity=0.283 Sum_probs=53.2
Q ss_pred cccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCCCCchHHHHHHHH
Q psy4197 21 SCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAF 100 (124)
Q Consensus 21 S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~~~d~~a~~ir~F 100 (124)
-..+..+|..|||..-..+-..-+.|.-+...|++..+.. + + ..+||=+... ..+...+.+..|
T Consensus 88 ~~~~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~-------------l-G-~f~EIE~~~~-~~e~~~~~~~~l 151 (179)
T 1yem_A 88 FEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEG-------------I-G-DFVDIEVISD-SPEEAKEKIWEV 151 (179)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETT-------------T-E-EEEEEEEECS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCC-------------C-C-CEEEEEEecC-ChHHHHHHHHHH
Confidence 3457888999999999999999999998888888877521 1 2 5668776665 445667888899
Q ss_pred HHhcc
Q psy4197 101 AEQLK 105 (124)
Q Consensus 101 AE~L~ 105 (124)
+.+|-
T Consensus 152 l~~LG 156 (179)
T 1yem_A 152 AKMLG 156 (179)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 98884
No 6
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=59.89 E-value=47 Score=24.09 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=53.7
Q ss_pred cccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCCCC--chHHHHHH
Q psy4197 21 SCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQ--DVIGEDMK 98 (124)
Q Consensus 21 S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~~~--d~~a~~ir 98 (124)
...+...|..+||+.-+.+-..-..|.-+.+.|++-.+... -..+||=+...++. +..-+.+.
T Consensus 93 ~~~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~l---------------g~f~EiE~e~~~~~~~~~~~~~~~ 157 (189)
T 2aca_A 93 LDSAQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGF---------------GHFAEFAIMTDDETALARYRERLV 157 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTT---------------EEEEEEEEEESCSGGGTTHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcccCC---------------eeEEEEEEEcCCccchHHHHHHHH
Confidence 34788999999999999998888889888899888876321 13578777776544 55678899
Q ss_pred HHHHhc
Q psy4197 99 AFAEQL 104 (124)
Q Consensus 99 ~FAE~L 104 (124)
.|+.+|
T Consensus 158 ~l~~~l 163 (189)
T 2aca_A 158 ALAQQF 163 (189)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999988
No 7
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=43.12 E-value=82 Score=21.91 Aligned_cols=79 Identities=8% Similarity=0.180 Sum_probs=55.4
Q ss_pred eeeeeeEeec--cccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCC
Q psy4197 11 IVRSSIDVAC--SCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPG 88 (124)
Q Consensus 11 lVRs~vdv~~--S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~ 88 (124)
..|.-+++.+ -..+...|..|||..-+..-..-+.|.-|.+.|.+-.+.. + + ..+||=+...
T Consensus 68 ~~~~E~e~~i~~~~~~~~~L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~-------------~-g-~~~EiE~~~~- 131 (165)
T 2dc4_A 68 EEFYELEFEVQDPEGAIELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEK-------------A-G-DFLDIEVITS- 131 (165)
T ss_dssp CEEEEEEEEBSCHHHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETT-------------T-E-EEEEEEECCS-
T ss_pred eeeeEEEEEcCCHHHHHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEecCC-------------C-c-cEEEEEEEcC-
Confidence 4554455444 3457788999999998888888888888888888876531 1 3 5678775454
Q ss_pred CCchHHHHHHHHHHhcc
Q psy4197 89 GQDVIGEDMKAFAEQLK 105 (124)
Q Consensus 89 ~~d~~a~~ir~FAE~L~ 105 (124)
..+...+.+..|+.+|-
T Consensus 132 ~~~~~~~~~~~l~~~lg 148 (165)
T 2dc4_A 132 NPEEGKKIIWDVARRLG 148 (165)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 34556778888888874
No 8
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=41.56 E-value=92 Score=22.08 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=56.5
Q ss_pred eeeeEeecc---ccHHHHHHHhCcceeeEEEEeeeeEeee-eeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCC
Q psy4197 13 RSSIDVACS---CTVVEFLTEMGCRMDFEYISRGYMFRKG-RMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPG 88 (124)
Q Consensus 13 Rs~vdv~~S---~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg-~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~ 88 (124)
|.-+++.++ ..+...|..+||..-+.+-..-..|.-+ .+.|.+-.+.. + + ..+||=+...+
T Consensus 78 r~E~e~~v~~~~~~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~-------------l-g-~f~EiE~e~~~ 142 (183)
T 2een_A 78 RLEIEVEIQEDVDKYFELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEG-------------L-G-KFIEIETLVKE 142 (183)
T ss_dssp EEEEEEEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETT-------------T-E-EEEEEEEECSS
T ss_pred EEEEEEeecCCHHHHHHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecC-------------C-e-eEEEEEEecCC
Confidence 445554444 4588999999999999999999999988 88888877521 1 1 24588877776
Q ss_pred CC--chHHHHHHHHHHhccc
Q psy4197 89 GQ--DVIGEDMKAFAEQLKP 106 (124)
Q Consensus 89 ~~--d~~a~~ir~FAE~L~P 106 (124)
+. +...+.+..++.+|-=
T Consensus 143 ~~~~~~~~~~~~~l~~~lgi 162 (183)
T 2een_A 143 KDEIPEAVEKLEKILRELGV 162 (183)
T ss_dssp GGGHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHcCC
Confidence 54 3446777888887643
No 9
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=36.16 E-value=38 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=23.9
Q ss_pred eeccccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEE
Q psy4197 18 VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILV 55 (124)
Q Consensus 18 v~~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~V 55 (124)
+..+..+.++|.+||+...-+.-.....--+|.+.|.|
T Consensus 18 i~~~~~~~~rL~~lGl~pG~~v~V~~~~p~~gpi~v~v 55 (81)
T 2k5l_A 18 LHGTGALKRRIMDMGITRGCEIYIRKVAPLGDPIQINV 55 (81)
T ss_dssp ECSSSHHHHHHHHHTCCTTCEEEEEEECTTSCCEEEEE
T ss_pred EECCHHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 44478899999999999876554433322234444443
No 10
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=35.32 E-value=43 Score=21.43 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=24.5
Q ss_pred eeccccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEE
Q psy4197 18 VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILV 55 (124)
Q Consensus 18 v~~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~V 55 (124)
+..+..+.++|.+||+...-+.-.....--+|.+.|.|
T Consensus 21 i~~~~~~~~rL~~mGl~pG~~V~V~~~~p~~gpi~v~v 58 (86)
T 2k4y_A 21 IVPESKVRRKIMDMGIVRGTEIYIEGKAPMGDPIALRL 58 (86)
T ss_dssp ECTTSSHHHHHHHHTCCTTCEEEEEEECTTSCSEEEEE
T ss_pred EECCHHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 44578899999999999976654443322234444443
No 11
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=30.35 E-value=47 Score=26.59 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.4
Q ss_pred ccCCceEEEEEeeCCCCCchHHHHHHHHHHhc--ccce
Q psy4197 73 PISQSYLVELSILAPGGQDVIGEDMKAFAEQL--KPLV 108 (124)
Q Consensus 73 ~~s~s~LVEiSvlap~~~d~~a~~ir~FAE~L--~Plv 108 (124)
|-+-.-|||| |-++.+.+...+.+..|++.+ +|++
T Consensus 149 P~~~m~LVEi-v~g~~Ts~~~~~~~~~~~~~~gk~pv~ 185 (319)
T 3ado_A 149 PPYYIPLVEL-VPHPETSPATVDRTHALMRKIGQSPVR 185 (319)
T ss_dssp STTTCCEEEE-EECTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CccccchHHh-cCCCCCcHHHHHHHHHHHHHhCCccCC
Confidence 4445679999 678899999999999999998 5753
No 12
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.08 E-value=52 Score=20.85 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=32.3
Q ss_pred CCCCceeeeeeeEeeccccHHHHHHHhCcceeeEEEE------eeeeEe
Q psy4197 5 DKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS------RGYMFR 47 (124)
Q Consensus 5 d~~~~~lVRs~vdv~~S~n~~~Fl~~LGfr~D~Eyl~------~G~~f~ 47 (124)
+.++.+.|+|.=.-.+.+.+.++|...|--.+-..+. +||.|-
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV 61 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTV 61 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEE
Confidence 4456678887766677788999999999766666666 577775
No 13
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initi midwest center for structural genomics, MCSG; 1.88A {Rhodopseudomonas palustris}
Probab=29.67 E-value=69 Score=22.90 Aligned_cols=30 Identities=20% Similarity=0.578 Sum_probs=25.8
Q ss_pred cHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEE
Q psy4197 23 TVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVS 56 (124)
Q Consensus 23 n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs 56 (124)
-+..||...||+. +...|.++.|.|.|...
T Consensus 29 ~A~~~L~~~Gy~I----l~rN~r~~~GEIDiIa~ 58 (134)
T 3fov_A 29 SAADYLERQGYRI----LARRFKTRCGEIDLVAQ 58 (134)
T ss_dssp HHHHHHHHTTCEE----EEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHCCCEE----EeccccCCCCcEEEEEE
Confidence 4678999999865 88999999999999875
No 14
>2pb9_A Phosphomethylpyrimidine kinase; phosphate, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.70A {Pyrococcus furiosus} SCOP: c.74.1.2
Probab=29.31 E-value=34 Score=26.14 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=23.0
Q ss_pred eeeeeeEeecccc----HHHHHHHhCcce
Q psy4197 11 IVRSSIDVACSCT----VVEFLTEMGCRM 35 (124)
Q Consensus 11 lVRs~vdv~~S~n----~~~Fl~~LGfr~ 35 (124)
-+|+.+.++++.. +.+-|+++||+.
T Consensus 91 ~iRsaiNIry~~~~~~~i~~~l~~~g~~v 119 (195)
T 2pb9_A 91 EYRSAINIRYSREIIEEIIEIAQERGFKV 119 (195)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHHHTTCEE
T ss_pred CceEEEEEeechhhhHHHHHHHHHcCCeE
Confidence 3799999999999 999999999976
No 15
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=26.63 E-value=49 Score=20.24 Aligned_cols=35 Identities=11% Similarity=-0.074 Sum_probs=25.2
Q ss_pred cccHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEE
Q psy4197 21 SCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILV 55 (124)
Q Consensus 21 S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~V 55 (124)
+..+.++|.+|||...-+.-.....--+|.+.|.|
T Consensus 19 ~~~~~~rL~~lGl~pG~~v~v~~~~p~~gpi~v~v 53 (75)
T 2gcx_A 19 SPAYRQKLLSLGMLPGSSFHVVRVAPLGDPVHIET 53 (75)
T ss_dssp CHHHHHHHTTTTCCSSEEEEECCCCSSCCEEEEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 67899999999999987776554433355665555
No 16
>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast, nucleotidyltransferase; NMR {Saccharomyces cerevisiae} SCOP: b.40.4.8 PDB: 1i3q_H 1i50_H 1i6h_H 1k83_H* 1nik_H 1nt9_H 1pqv_H 1r5u_H 1r9s_H* 1r9t_H* 1sfo_H* 1twa_H* 1twc_H* 1twf_H* 1twg_H* 1twh_H* 1wcm_H 1y1v_H 1y1w_H 1y1y_H ...
Probab=26.31 E-value=48 Score=24.43 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=16.9
Q ss_pred eeeEEEEeeeeEe-----eeeeEEEEE
Q psy4197 35 MDFEYISRGYMFR-----KGRMKILVS 56 (124)
Q Consensus 35 ~D~Eyl~~G~~f~-----kg~ikI~Vs 56 (124)
=||||+--|..|+ +.+++|.+|
T Consensus 91 d~ydYVM~GkvYk~e~~~~~~~~vy~S 117 (146)
T 1a1d_A 91 DDYDYVMYGTAYKFEEVSKDLIAVYYS 117 (146)
T ss_pred cccCEEEeeEEEEEeecCCceEEEEEE
Confidence 6899999999998 235566655
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.95 E-value=55 Score=20.29 Aligned_cols=38 Identities=5% Similarity=0.005 Sum_probs=26.3
Q ss_pred CCCCCCceeeeeeeEeeccccHHHHHHHhCcceeeEEE
Q psy4197 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYI 40 (124)
Q Consensus 3 ~gd~~~~~lVRs~vdv~~S~n~~~Fl~~LGfr~D~Eyl 40 (124)
..++.+-+.|+|.=.-.+...+.++|...|--.+...+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 45 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVV 45 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 44566777787765566677889999998865554444
No 18
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=25.53 E-value=37 Score=20.35 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=20.7
Q ss_pred CCCCCCCceeeeeeeEeeccccHHHHHHHh
Q psy4197 2 GVGDKARPTIVRSSIDVACSCTVVEFLTEM 31 (124)
Q Consensus 2 g~gd~~~~~lVRs~vdv~~S~n~~~Fl~~L 31 (124)
|...+.+.+.|+|.=.-.+.+.+.++|...
T Consensus 1 g~~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 30 (87)
T 2hzc_A 1 GPLGSARRLYVGNIPFGITEEAMMDFFNAQ 30 (87)
T ss_dssp CCSGGGGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 444556666777654455667888999988
No 19
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=24.41 E-value=75 Score=20.04 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=24.0
Q ss_pred eccccHHHHHHHhCcceeeEEEEeeee-EeeeeeEEEE
Q psy4197 19 ACSCTVVEFLTEMGCRMDFEYISRGYM-FRKGRMKILV 55 (124)
Q Consensus 19 ~~S~n~~~Fl~~LGfr~D~Eyl~~G~~-f~kg~ikI~V 55 (124)
..+..+.++|.+|||...-+.-..... |.+|.+.|.|
T Consensus 22 ~~~~~~~~rL~~lGl~pG~~v~V~~~~p~g~~pi~v~v 59 (85)
T 3mhx_A 22 HANDAIARRLRELGFVKGEEVRMVAKGPVGGEPLLVQV 59 (85)
T ss_dssp SSSCHHHHHHHHTTCCTTCEEEEEESCSSSCSCEEEEE
T ss_pred CCCHHHHHHHHHCCCCCCCEEEEEEeCCCCCCCEEEEE
Confidence 567889999999999987665443322 2224444443
No 20
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=24.09 E-value=90 Score=18.79 Aligned_cols=36 Identities=14% Similarity=-0.064 Sum_probs=24.3
Q ss_pred CCCCceeeeeeeEeeccccHHHHHHHhCcceeeEEE
Q psy4197 5 DKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYI 40 (124)
Q Consensus 5 d~~~~~lVRs~vdv~~S~n~~~Fl~~LGfr~D~Eyl 40 (124)
...+.+.|+|.=.-.+...+.++|...|=-.+-...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~ 41 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIK 41 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 445566677665566677889999998855554444
No 21
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=23.81 E-value=80 Score=21.21 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=19.3
Q ss_pred eeccccHHHHHHHhCcceeeEEEEe
Q psy4197 18 VACSCTVVEFLTEMGCRMDFEYISR 42 (124)
Q Consensus 18 v~~S~n~~~Fl~~LGfr~D~Eyl~~ 42 (124)
+.....+.++|.+||+...-+.-..
T Consensus 17 I~~~~~l~rrL~~lGl~pG~~V~Vv 41 (105)
T 2k5f_A 17 VAAEPAVRRRLMDLGLVRGAKLKVL 41 (105)
T ss_dssp ECSCHHHHHHHHHHTCSTTCEEEEE
T ss_pred EECCHHHHHHHHHcCCCCCCEEEEE
Confidence 4447889999999999997665443
No 22
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.73 E-value=68 Score=19.54 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=30.8
Q ss_pred CCCCCceeeeeeeEeeccccHHHHHHHhCc-ceeeEEEEeeeeEe
Q psy4197 4 GDKARPTIVRSSIDVACSCTVVEFLTEMGC-RMDFEYISRGYMFR 47 (124)
Q Consensus 4 gd~~~~~lVRs~vdv~~S~n~~~Fl~~LGf-r~D~Eyl~~G~~f~ 47 (124)
++..+.+.|+|.=.-.+.+.+.++|...|- ...-....+||.|-
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV 49 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFV 49 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEE
Confidence 455566677766556677788999999997 44444566788775
No 23
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=23.59 E-value=34 Score=23.82 Aligned_cols=64 Identities=8% Similarity=0.120 Sum_probs=34.9
Q ss_pred cHHHHHHHhCcceeeEEEEeeeeEeeeeeEEEEEEeeeecCCCCCCCCCCccCCceEEEEEeeCCCCCchHHHHHHHHHH
Q psy4197 23 TVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAE 102 (124)
Q Consensus 23 n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ikI~Vs~i~k~~~~~~~~~~~e~~s~s~LVEiSvlap~~~d~~a~~ir~FAE 102 (124)
.+-+.|.++|++.-.++...||-|..- ..+.+-.++-+.+--|...+.-.+.++.|++
T Consensus 108 ~l~~~l~~~G~~~~~~~~~~g~~~~~s----------------------~~~~~~~~~~l~~~~~~~~~~~~~~i~~w~~ 165 (173)
T 2fcr_A 108 EIHDCFAKQGAKPVGFSNPDDYDYEES----------------------KSVRDGKFLGLPLDMVNDQIPMEKRVAGWVE 165 (173)
T ss_dssp HHHHHHHHTTCEEECCBCGGGSCCSCC----------------------TTEETTEESSEEEETTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEeecccCCcccccc----------------------hhhhCCeeeeeeecCCCCccccHHHHHHHHH
Confidence 445566666777666666666555311 1111112233322223334566889999999
Q ss_pred hcccce
Q psy4197 103 QLKPLV 108 (124)
Q Consensus 103 ~L~Plv 108 (124)
+|++-+
T Consensus 166 ~i~~~~ 171 (173)
T 2fcr_A 166 AVVSET 171 (173)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987643
No 24
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=22.14 E-value=58 Score=19.70 Aligned_cols=21 Identities=19% Similarity=-0.062 Sum_probs=17.3
Q ss_pred cccHHHHHHHhCcceeeEEEE
Q psy4197 21 SCTVVEFLTEMGCRMDFEYIS 41 (124)
Q Consensus 21 S~n~~~Fl~~LGfr~D~Eyl~ 41 (124)
+..+.++|.+||+...-+.-.
T Consensus 20 ~~~~~~rL~~lGl~~G~~v~v 40 (75)
T 2h3j_A 20 SNGYRQRLFSMGLLPGAALRV 40 (75)
T ss_dssp CTTHHHHHHHHTCCTTCEEEE
T ss_pred CHHHHHHHHHcCCCCCCEEEE
Confidence 678999999999999765543
No 25
>1qsm_A HPA2 histone acetyltransferase; protein-acetyl coenzyme A complex; HET: ACO; 2.40A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1qso_A
Probab=21.81 E-value=83 Score=19.32 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=13.8
Q ss_pred cHHHHHHHhCcceeeEE
Q psy4197 23 TVVEFLTEMGCRMDFEY 39 (124)
Q Consensus 23 n~~~Fl~~LGfr~D~Ey 39 (124)
....|.+.+||+.++..
T Consensus 130 ~a~~~y~k~Gf~~~~~~ 146 (152)
T 1qsm_A 130 RAQLLYVKVGYKAPKIL 146 (152)
T ss_dssp HHHHHHHHHEEECSEEE
T ss_pred HHHHHHHHcCCCccceE
Confidence 57899999999976544
No 26
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=21.70 E-value=18 Score=25.76 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=36.4
Q ss_pred EeeeeEeeeeeEEEEEEe----eeecCCCCCCCCCCcc-CCceEEEEEeeCCCCC-chHHHHHHHHHHhcccceeeecCC
Q psy4197 41 SRGYMFRKGRMKILVSKI----FKMSQGKPSDSGVEPI-SQSYLVELSILAPGGQ-DVIGEDMKAFAEQLKPLVQLEKID 114 (124)
Q Consensus 41 ~~G~~f~kg~ikI~Vs~i----~k~~~~~~~~~~~e~~-s~s~LVEiSvlap~~~-d~~a~~ir~FAE~L~Plv~L~K~d 114 (124)
..|..|....++|+..-- .++....+. .....+ --+|.||+++.++..+ ..++-+....-+.+++++ +++|
T Consensus 11 ~~~~~~~~~~~~i~k~~~F~aAH~L~~~~~~-gkC~~lHGH~y~v~V~v~g~~~~~~GmV~Df~~lk~~~~~vi--~~lD 87 (138)
T 2oba_A 11 SSGLVPRGSHMELFKEFTFESAHRLPHVPEG-HKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKPIY--EQLD 87 (138)
T ss_dssp --------CCEEEEEEEEEEEEECCSSSCTT-CGGGSSEEEEEEEEEEEEECCCTTTSSSSCHHHHHHHHHHHH--HHHT
T ss_pred cCcceeeceEEEEEEEEEEEeEeecCCCCCC-CcccCccCCcEEEEEEEEeccCCCCCEEEeHHHHHHHHHHHH--HhCC
Confidence 345555555544444332 233221011 233344 5578999999886543 445444455555566644 7788
Q ss_pred cccc
Q psy4197 115 YKRL 118 (124)
Q Consensus 115 ~~~l 118 (124)
|+.|
T Consensus 88 H~~L 91 (138)
T 2oba_A 88 HNYL 91 (138)
T ss_dssp TSBG
T ss_pred Cccc
Confidence 8876
No 27
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=21.17 E-value=55 Score=21.55 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=24.4
Q ss_pred ccccHHHHHHHhCcceeeEEEEeeeeEeeee
Q psy4197 20 CSCTVVEFLTEMGCRMDFEYISRGYMFRKGR 50 (124)
Q Consensus 20 ~S~n~~~Fl~~LGfr~D~Eyl~~G~~f~kg~ 50 (124)
.+.....|.+.+||+...++--.||.|..|+
T Consensus 149 ~n~~a~~~y~k~GF~~~~~~~~~~~~~~~~~ 179 (197)
T 3qb8_A 149 TNIISQNMFEKHGFETVGSVKYKGYQYGITK 179 (197)
T ss_dssp CSHHHHHHHHHTTCEEEEEEESTTCCBTTBC
T ss_pred CCHHHHHHHHHCCCeEEEEEEEcceecCCCc
Confidence 3456789999999999888877788776553
No 28
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=20.58 E-value=57 Score=21.89 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.8
Q ss_pred ceEEEEEeeCCCCCchHHHHHHH
Q psy4197 77 SYLVELSILAPGGQDVIGEDMKA 99 (124)
Q Consensus 77 s~LVEiSvlap~~~d~~a~~ir~ 99 (124)
+-.||++|.+|+|-|.+=++|+.
T Consensus 7 ra~iel~c~~~dGIe~IK~AL~~ 29 (93)
T 2qn6_B 7 SGLITVRTNEPLGVEKIKEVISK 29 (93)
T ss_dssp EEEEEEEECCTTTHHHHHHHHHH
T ss_pred EEEEEEEeCCCchHHHHHHHHHH
Confidence 45799999999999999888874
No 29
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=20.26 E-value=86 Score=18.60 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=22.6
Q ss_pred CCCCceeeeeeeEeeccccHHHHHHHhCcceeeEEEE
Q psy4197 5 DKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS 41 (124)
Q Consensus 5 d~~~~~lVRs~vdv~~S~n~~~Fl~~LGfr~D~Eyl~ 41 (124)
+..+.+.|+|.=.-.+-+.+.++|...|--.+-..+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 40 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK 40 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe
Confidence 4455666666544556677888998887655444443
No 30
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=20.16 E-value=36 Score=23.40 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.8
Q ss_pred ccHHHHHHHhCcce
Q psy4197 22 CTVVEFLTEMGCRM 35 (124)
Q Consensus 22 ~n~~~Fl~~LGfr~ 35 (124)
.+++.||+|+||..
T Consensus 31 ~~FIaFLNElG~t~ 44 (90)
T 1jr5_A 31 ANFIAFLNEIGVTH 44 (90)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCC
Confidence 57899999999943
Done!