Your job contains 1 sequence.
>psy4197
MGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFK
MSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRLPL
SMAP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4197
(124 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0026873 - symbol:MED18 "Mediator complex subunit 1... 404 1.1e-37 1
ZFIN|ZDB-GENE-040426-1276 - symbol:med18 "mediator of RNA... 337 1.4e-30 1
UNIPROTKB|Q9BUE0 - symbol:MED18 "Mediator of RNA polymera... 328 1.3e-29 1
UNIPROTKB|J9P4L8 - symbol:MED18 "Uncharacterized protein"... 325 2.7e-29 1
UNIPROTKB|Q0VCD4 - symbol:MED18 "Mediator of RNA polymera... 324 3.4e-29 1
UNIPROTKB|I3LR60 - symbol:MED18 "Uncharacterized protein"... 324 3.4e-29 1
MGI|MGI:1914469 - symbol:Med18 "mediator of RNA polymeras... 323 4.4e-29 1
WB|WBGene00007018 - symbol:mdt-18 species:6239 "Caenorhab... 195 1.6e-15 1
DICTYBASE|DDB_G0285713 - symbol:med18 "putative mediator ... 98 0.00011 1
TAIR|locus:2041243 - symbol:MED18 "AT2G22370" species:370... 91 0.00048 1
>FB|FBgn0026873 [details] [associations]
symbol:MED18 "Mediator complex subunit 18" species:7227
"Drosophila melanogaster" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IC;IMP] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA;IC] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR019095 Pfam:PF09637 EMBL:AE014298 EMBL:AL021106
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG262405 KO:K15135 CTD:54797
GeneTree:ENSGT00390000003312 OMA:VQLEKID EMBL:AY119167
EMBL:BT071807 PIR:T12679 RefSeq:NP_569948.3 UniGene:Dm.11084
ProteinModelPortal:Q9XZT1 DIP:DIP-17703N IntAct:Q9XZT1
MINT:MINT-280891 STRING:Q9XZT1 PaxDb:Q9XZT1 PRIDE:Q9XZT1
EnsemblMetazoa:FBtr0070308 GeneID:31140 KEGG:dme:Dmel_CG14802
FlyBase:FBgn0026873 InParanoid:Q9XZT1 OrthoDB:EOG431ZF1
PhylomeDB:Q9XZT1 GenomeRNAi:31140 NextBio:772108 Bgee:Q9XZT1
Uniprot:Q9XZT1
Length = 217
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 77/114 (67%), Positives = 95/114 (83%)
Query: 5 DKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQG 64
D RPT+VRS +D AC+ ++EFLTEMG R++FEYI++GYMFRKGRMKI VSK+ K+ G
Sbjct: 100 DLRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPG 159
Query: 65 KPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
K D EPISQSY+VELS++AP GQ+ +GE+M+ FAEQLKPLVQLEKIDYKRL
Sbjct: 160 KQQDMANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLKPLVQLEKIDYKRL 213
>ZFIN|ZDB-GENE-040426-1276 [details] [associations]
symbol:med18 "mediator of RNA polymerase II
transcription, subunit 18 homolog (yeast)" species:7955 "Danio
rerio" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR019095 Pfam:PF09637
ZFIN:ZDB-GENE-040426-1276 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG262405 KO:K15135 CTD:54797 GeneTree:ENSGT00390000003312
HOGENOM:HOG000037435 HOVERGEN:HBG105560 OMA:VQLEKID
OrthoDB:EOG46Q6TJ EMBL:BC053113 IPI:IPI00503419 RefSeq:NP_956629.1
UniGene:Dr.19506 ProteinModelPortal:Q7T3H7 STRING:Q7T3H7
PRIDE:Q7T3H7 Ensembl:ENSDART00000060447 GeneID:393306
KEGG:dre:393306 InParanoid:Q7T3H7 NextBio:20814358 Bgee:Q7T3H7
Uniprot:Q7T3H7
Length = 208
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 67/116 (57%), Positives = 91/116 (78%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
VGDK+R +VR+ +DVA S ++ +FL EMG RMD E++++G +FRKG MK++VSK+ ++
Sbjct: 93 VGDKSRHALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKGQVFRKGVMKVVVSKLSRVL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+D+ EP+S SYLVELS+LAP GQD + EDM++FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDN-TEPLSLSYLVELSVLAPAGQDTVSEDMRSFAEQLKPLVHLEKIDPKRL 207
>UNIPROTKB|Q9BUE0 [details] [associations]
symbol:MED18 "Mediator of RNA polymerase II transcription
subunit 18" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR019095 Pfam:PF09637 Reactome:REACT_111045
EMBL:CH471059 EMBL:AL353622 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG262405 KO:K15135 CTD:54797 HOVERGEN:HBG105560 OMA:VQLEKID
OrthoDB:EOG46Q6TJ EMBL:AB107222 EMBL:AK000052 EMBL:BC002694
IPI:IPI00305986 RefSeq:NP_001120822.1 RefSeq:NP_060108.2
UniGene:Hs.479911 ProteinModelPortal:Q9BUE0 IntAct:Q9BUE0
STRING:Q9BUE0 PhosphoSite:Q9BUE0 DMDM:74752353 PaxDb:Q9BUE0
PeptideAtlas:Q9BUE0 PRIDE:Q9BUE0 DNASU:54797
Ensembl:ENST00000373842 Ensembl:ENST00000398997 GeneID:54797
KEGG:hsa:54797 UCSC:uc001bpt.4 GeneCards:GC01P028666
H-InvDB:HIX0000293 HGNC:HGNC:25944 HPA:HPA027429 MIM:612384
neXtProt:NX_Q9BUE0 PharmGKB:PA134884523 InParanoid:Q9BUE0
PhylomeDB:Q9BUE0 GenomeRNAi:54797 NextBio:57479 ArrayExpress:Q9BUE0
Bgee:Q9BUE0 CleanEx:HS_MED18 Genevestigator:Q9BUE0 Uniprot:Q9BUE0
Length = 208
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 66/116 (56%), Positives = 89/116 (76%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GDK R +VR+ +D+A S + +FL EMG RMD E++++G++FRKG MKI+V KIF++
Sbjct: 93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRIL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+DS E +S SYLVELS++AP GQD++ +DMK FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRL 207
>UNIPROTKB|J9P4L8 [details] [associations]
symbol:MED18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR019095 Pfam:PF09637 GO:GO:0016592
GO:GO:0001104 KO:K15135 CTD:54797 GeneTree:ENSGT00390000003312
OMA:VQLEKID EMBL:AAEX03001701 EMBL:AAEX03001702 RefSeq:XP_544460.1
Ensembl:ENSCAFT00000048413 GeneID:487334 KEGG:cfa:487334
Uniprot:J9P4L8
Length = 208
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 65/116 (56%), Positives = 89/116 (76%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GDK R +VR+ +D+A S + +FL EMG RMD E++++G++FRKG MKI+V KIF++
Sbjct: 93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRIL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+DS E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207
>UNIPROTKB|Q0VCD4 [details] [associations]
symbol:MED18 "Mediator of RNA polymerase II transcription
subunit 18" species:9913 "Bos taurus" [GO:0016592 "mediator
complex" evidence=IEA] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] InterPro:IPR019095 Pfam:PF09637
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG262405 KO:K15135
EMBL:BC120223 IPI:IPI00713723 RefSeq:NP_001069703.1
UniGene:Bt.27848 ProteinModelPortal:Q0VCD4 STRING:Q0VCD4
Ensembl:ENSBTAT00000003468 GeneID:540695 KEGG:bta:540695 CTD:54797
GeneTree:ENSGT00390000003312 HOGENOM:HOG000037435
HOVERGEN:HBG105560 InParanoid:Q0VCD4 OMA:VQLEKID OrthoDB:EOG46Q6TJ
NextBio:20878779 Uniprot:Q0VCD4
Length = 208
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 65/116 (56%), Positives = 89/116 (76%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GDK R +VR+ +D+A S + +FL EMG RMD E+++RG++FRKG MKI+V KIF++
Sbjct: 93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVARGHLFRKGIMKIVVYKIFRIL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+D+ E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDN-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207
>UNIPROTKB|I3LR60 [details] [associations]
symbol:MED18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016592 "mediator complex" evidence=IEA] [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR019095 Pfam:PF09637 GO:GO:0016592 GO:GO:0001104
KO:K15135 GeneTree:ENSGT00390000003312 OMA:VQLEKID EMBL:FP312758
RefSeq:XP_003356288.1 Ensembl:ENSSSCT00000028982 GeneID:100621177
KEGG:ssc:100621177 Uniprot:I3LR60
Length = 208
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 65/116 (56%), Positives = 89/116 (76%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GDK R +VR+ +D+A S + +FL EMG RMD E++++G++FRKG MKI+V KIF++
Sbjct: 93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIVVYKIFRIL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+DS E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207
>MGI|MGI:1914469 [details] [associations]
symbol:Med18 "mediator of RNA polymerase II transcription,
subunit 18 homolog (yeast)" species:10090 "Mus musculus"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016592 "mediator complex" evidence=ISA;IDA]
InterPro:IPR019095 Pfam:PF09637 MGI:MGI:1914469 GO:GO:0005654
Reactome:REACT_127416 EMBL:AL805897 Reactome:REACT_27166
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG262405 KO:K15135 CTD:54797
GeneTree:ENSGT00390000003312 HOGENOM:HOG000037435
HOVERGEN:HBG105560 OMA:VQLEKID OrthoDB:EOG46Q6TJ EMBL:AK012886
EMBL:AK159696 EMBL:BC068306 IPI:IPI00112230 RefSeq:NP_080315.1
UniGene:Mm.45929 ProteinModelPortal:Q9CZ82 IntAct:Q9CZ82
STRING:Q9CZ82 PhosphoSite:Q9CZ82 PaxDb:Q9CZ82 PRIDE:Q9CZ82
Ensembl:ENSMUST00000102567 GeneID:67219 KEGG:mmu:67219
UCSC:uc008vbi.2 InParanoid:Q9CZ82 NextBio:323916 Bgee:Q9CZ82
Genevestigator:Q9CZ82 Uniprot:Q9CZ82
Length = 208
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 64/116 (55%), Positives = 89/116 (76%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GDK R +VR+ +D+A S + +FL EMG RMD E++++G++FRKG MK++V KIF++
Sbjct: 93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKVVVYKIFRIL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+DS E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207
>WB|WBGene00007018 [details] [associations]
symbol:mdt-18 species:6239 "Caenorhabditis elegans"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
InterPro:IPR019095 Pfam:PF09637 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0010171 GO:GO:0007413 GO:GO:0016592 GO:GO:0001104
EMBL:FO080958 eggNOG:NOG262405 KO:K15135
GeneTree:ENSGT00390000003312 HOGENOM:HOG000037435
RefSeq:NP_491869.1 ProteinModelPortal:Q966M5 DIP:DIP-26593N
IntAct:Q966M5 MINT:MINT-1050773 STRING:Q966M5 PaxDb:Q966M5
EnsemblMetazoa:C55B7.9.1 EnsemblMetazoa:C55B7.9.2 GeneID:183844
KEGG:cel:CELE_C55B7.9 UCSC:C55B7.9.1 CTD:183844 WormBase:C55B7.9
InParanoid:Q966M5 OMA:ESAEYMP NextBio:922560 Uniprot:Q966M5
Length = 232
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 47/126 (37%), Positives = 74/126 (58%)
Query: 5 DKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
D+ PTIVR I + S ++ + +G RMD+EY+++G ++ KG +KIL S + S+
Sbjct: 105 DQKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYMTQGKLWTKGNIKILHSILTSTSR 164
Query: 64 GKPSDSG-VEPISQSYLVELSILAPGGQDVI--GEDMKAFAEQLKPLVQLEKIDY--KRL 118
DS ++ +S S LVE+SI P + + + ++ FA+QL PLV +EK+DY K
Sbjct: 165 AGTYDSNSIKSVSDSALVEISISLPESAEYMPAAKSLRDFADQLMPLVNMEKVDYWKKMF 224
Query: 119 PLSMAP 124
P AP
Sbjct: 225 PAQAAP 230
>DICTYBASE|DDB_G0285713 [details] [associations]
symbol:med18 "putative mediator complex subunit 18"
species:44689 "Dictyostelium discoideum" [GO:0016592 "mediator
complex" evidence=IEA;ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR019095 Pfam:PF09637 dictyBase:DDB_G0285713
GenomeReviews:CM000153_GR EMBL:AAFI02000079 GO:GO:0006366
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG262405 KO:K15135
RefSeq:XP_638230.1 EnsemblProtists:DDB0266918 GeneID:8625278
KEGG:ddi:DDB_G0285713 OMA:NINAMIR Uniprot:Q54MR3
Length = 251
Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
Identities = 30/111 (27%), Positives = 56/111 (50%)
Query: 11 IVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKI-LVSKIFKMSQGKPSDS 69
++R+ +D+ S T +L +G D+EY GY + + + LV+ ++ G
Sbjct: 126 MIRNVVDIKSSETFFIYLENLGYVKDYEYFVDGYQYSTYNLSLFLVNHRRVLNDGTKG-- 183
Query: 70 GVEPISQSYLVELSILAPGGQDVIG--EDMKAFAEQLKPLVQLEKIDYKRL 118
E +++ +VEL L+ G + + E + +AE L P V+L K D++ L
Sbjct: 184 --ELLNKHSMVELQCLS-GEEGFVAAAEYLNTYAEYLYPFVELIKFDHRLL 231
>TAIR|locus:2041243 [details] [associations]
symbol:MED18 "AT2G22370" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0010219 "regulation of vernalization response"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0048440 "carpel development"
evidence=IGI] [GO:0048441 "petal development" evidence=IGI]
[GO:0048442 "sepal development" evidence=IGI] [GO:0048443 "stamen
development" evidence=IGI] [GO:0048510 "regulation of timing of
transition from vegetative to reproductive phase" evidence=IMP]
[GO:0048833 "specification of floral organ number" evidence=IMP]
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0006351
EMBL:AC006592 GO:GO:0016592 EMBL:BT029378 IPI:IPI00548747
PIR:H84611 RefSeq:NP_565534.1 UniGene:At.28136
ProteinModelPortal:Q9SJZ6 IntAct:Q9SJZ6 PaxDb:Q9SJZ6 PRIDE:Q9SJZ6
EnsemblPlants:AT2G22370.1 GeneID:816769 KEGG:ath:AT2G22370
TAIR:At2g22370 eggNOG:NOG262405 InParanoid:Q9SJZ6 KO:K15135
OMA:MECVVQG PhylomeDB:Q9SJZ6 ProtClustDB:CLSN2688342
Genevestigator:Q9SJZ6 Uniprot:Q9SJZ6
Length = 219
Score = 91 (37.1 bits), Expect = 0.00048, P = 0.00048
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 2 GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF---RKGRMKILVSKI 58
G G +VR+ I+ S + +G ++D E + G+ F R + + VS +
Sbjct: 78 GAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAFHFQRTAHISVSVSSV 137
Query: 59 FKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGE---DMKAFAEQLKPLVQLEK 112
KM + D V P++ + + + AP + E + +F E L PLV L K
Sbjct: 138 NKMPKVHAIDEAV-PVTPGMQI-VDVTAPATSENYSEVAAAVSSFCEFLAPLVHLSK 192
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 124 124 0.00091 102 3 11 22 0.50 30
29 0.39 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 487 (52 KB)
Total size of DFA: 100 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.87u 0.15s 13.02t Elapsed: 00:00:00
Total cpu time: 12.87u 0.15s 13.02t Elapsed: 00:00:00
Start: Thu Aug 15 14:08:37 2013 End: Thu Aug 15 14:08:37 2013