RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4197
         (124 letters)



>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976
           {Bacillus halodurans [TaxId: 86665]}
          Length = 90

 Score = 25.5 bits (56), Expect = 1.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 90  QDVIGEDMKAFAEQL 104
            DV G D+ AF + L
Sbjct: 56  LDVTGTDVAAFCDAL 70


>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus
           cereus [TaxId: 1396]}
          Length = 82

 Score = 25.1 bits (55), Expect = 1.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 90  QDVIGEDMKAFAEQL 104
            D+ GED+ +FA++L
Sbjct: 60  LDITGEDVASFADEL 74


>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 112

 Score = 24.7 bits (54), Expect = 2.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 90  QDVIGEDMKAFAEQL 104
            D+ GED+ AF ++L
Sbjct: 76  TDLTGEDVAAFCDEL 90


>d1b35a_ b.121.4.1 (A:) Insect picorna-like virus coat proteins
           {Cricket paralysis virus [TaxId: 12136]}
          Length = 260

 Score = 24.2 bits (52), Expect = 5.0
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 37  FEYISRGYMFRKG--RMKILVSK 57
           F+Y    Y F +G  R+K++   
Sbjct: 91  FDYYYYLYAFWRGSMRIKMVAET 113


>d1bndb_ g.17.1.3 (B:) Neurotrophin 3, NT3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 108

 Score = 23.2 bits (50), Expect = 8.1
 Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 2/24 (8%)

Query: 1   MGVGDKARPTIVRSSIDVACSCTV 24
                      +R  ID +C C +
Sbjct: 84  SENNKLVGWRWIR--IDTSCVCAL 105


>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 67

 Score = 22.5 bits (48), Expect = 8.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 22 CTVVEFLTEMGCRMDFEYISR 42
          C++V FL  +GC    +Y + 
Sbjct: 4  CSIVSFLARLGCSSCLDYFTT 24


>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 200

 Score = 23.7 bits (51), Expect = 8.5
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 54  LVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAE 102
           L   +   ++ K     VEP  +  +  +        D+  +DM+AF +
Sbjct: 37  LAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEK 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 447,152
Number of extensions: 18810
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 9
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)