BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4200
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 82 VLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRD 137
V L D + + +G+ G + +F+++ D+G + + QPL RE T + +V
Sbjct: 29 VTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 88
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
G T K N I+VGDV + P F N +S I E+ P+G+ + V A D DL S+ Y
Sbjct: 89 GVITRKVN--IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 146
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
P FF IDS G + + LD E+ LTV A + +PL +
Sbjct: 147 S-FQPPSPFFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDKTRPL-----STL 196
Query: 258 AQVTVTILDVND 269
A + + I D+ D
Sbjct: 197 ANLAIIITDMQD 208
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
N P F N F ++ E P+GS V ++ A+D D ++ FF ++ +
Sbjct: 3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVSGEEASRFFAVEPD 60
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
TG + +PLDRE E + + Q +V + + DVND+ P
Sbjct: 61 TGVVWLRQPLDRET-------------KSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAP 107
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
F+ + Y V IPE+ P G+ P + TD DL
Sbjct: 108 TFHNQPYSVRIPENTPVGT--PIFIVNATDPDL 138
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
+QV DVNDN P+F Y+ + E GT I + A D D G G ++Y
Sbjct: 97 IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG--AGGSVLYSF 148
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 82 VLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRD 137
V L D + + +G+ G + +F+++ D+G + + QPL RE T + +V
Sbjct: 30 VTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 89
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
G T K N I+VGDV + P F N +S I E+ P+G+ + V A D DL S+ Y
Sbjct: 90 GVITRKVN--IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
P FF IDS G + + LD E+ LTV A + +PL +
Sbjct: 148 S-FQPPSPFFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDKTRPL-----STL 197
Query: 258 AQVTVTILDV 267
A + + I D+
Sbjct: 198 ANLAIIITDL 207
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
N P F N F ++ E P+GS V ++ A+D D ++ FF ++ +
Sbjct: 4 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVSGEEASRFFAVEPD 61
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
TG + +PLDRE E + + Q +V + + DVND+ P
Sbjct: 62 TGVVWLRQPLDRET-------------KSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAP 108
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
F+ + Y V IPE+ P G+ P + TD DL
Sbjct: 109 TFHNQPYSVRIPENTPVGT--PIFIVNATDPDL 139
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
+QV DVNDN P+F Y+ + E GT I + A D D G G ++Y
Sbjct: 98 IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG--AGGSVLYSF 149
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 82 VLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRD 137
V L D + + +G+ G + +F+++ D+G + + QPL RE T + +V
Sbjct: 30 VTQLLARDMDNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 89
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
G T K N I+VGDV + P F N +S I E+ P+G+ + V A D DL S+ Y
Sbjct: 90 GVITRKVN--IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
P FF IDS G + + LD E+ LTV A + +PL +
Sbjct: 148 S-FQPPSPFFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDKTRPL-----STL 197
Query: 258 AQVTVTILDV 267
A + + I D+
Sbjct: 198 ANLAIIITDL 207
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
N P F N F ++ E P+GS V ++ A+D D ++ FF ++ +
Sbjct: 4 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVPGEEASRFFAVEPD 61
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
TG + +PLDRE E + + Q +V + + DVND+ P
Sbjct: 62 TGVVWLRQPLDRET-------------KSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAP 108
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
F+ + Y V IPE+ P G+ P + TD DL
Sbjct: 109 TFHNQPYSVRIPENTPVGT--PIFIVNATDPDL 139
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
+QV DVNDN P+F Y+ + E GT I + A D D G G ++Y
Sbjct: 98 IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG--AGGSVLYSF 149
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 82 VLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRD 137
V L D + + +G+ G + +F+++ D+G + + QPL RE T + +V
Sbjct: 30 VTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 89
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
G T K N I+VG V + P F N +S I E+ P+G+ + V A D DL S+ Y
Sbjct: 90 GVITRKVN--IQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
P FF IDS G + + LD E+ LTV A + +PL +
Sbjct: 148 S-FQPPSPFFAIDSARGIVTVIQELDYEV----TQAYQLTVNATDQDKTRPL-----STL 197
Query: 258 AQVTVTILDV 267
A + + I D+
Sbjct: 198 ANLAIIITDL 207
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
N P F N F ++ E P+GS V ++ A+D D ++ FF ++ +
Sbjct: 4 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVSGEEASRFFAVEPD 61
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
TG + +PLDRE E + + Q +V + + VND+ P
Sbjct: 62 TGVVWLRQPLDRET-------------KSEFTVEFSVSDHQGVITRKVNIQVGGVNDNAP 108
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
F+ + Y V IPE+ P G+ P + TD DL
Sbjct: 109 TFHNQPYSVRIPENTPVGT--PIFIVNATDPDL 139
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
+QV VNDN P+F Y+ + E GT I + A D D G G ++Y
Sbjct: 98 IQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG--AGGSVLYSF 149
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 105
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEF-----FLI 209
P F F G + E A G+ V++V A D D +I Y +++ E F +
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 210 DSNTGELKTAKP-LDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268
+ +TG + LDRE + +L V+A + LQ + + A+ +T+ D+N
Sbjct: 166 NRDTGVISVLTSGLDRE----SYPTYTLVVQAAD------LQGEGLSTTAKAVITVKDIN 215
Query: 269 DSPPVFNRKEYVVHIPED 286
D+ PVFN Y +PE+
Sbjct: 216 DNAPVFNPSTYQGQVPEN 233
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 85/231 (36%), Gaps = 61/231 (26%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + S V + P++ + +T+ D
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKY-ILYSHAVSSNGEAVEDPME---------IVITVTD 100
Query: 267 VNDSPPVFNRKEYVVHIPE-DIPDGSL-----------------------------LPDL 296
ND+ P F ++ + + E +P S+ LP
Sbjct: 101 QNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK 160
Query: 297 DMIVTDSD--------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPS 336
+M + D LV+ E LS++A ++ V D+NDN P
Sbjct: 161 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV 220
Query: 337 FELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYV 387
F + Y G V E + I T+ D D + VY ++ + +V
Sbjct: 221 FNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFV 270
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 25/222 (11%)
Query: 75 STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
+T + I T+ DPE + + F+++RD+G + V + + T V
Sbjct: 140 NTYNAAIAYTIVSQDPE-------LPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQ 192
Query: 135 IRD----GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVV-LRVEAKDGDL 189
D G T+ V I V D+ + P+F S++ G++ E+ + L+V D
Sbjct: 193 AADLQGEGLSTTAKAV-ITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVTDDDAPN 251
Query: 190 AQPRSIYYDLLTNPDEFFLI----DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVD 245
Y ++ +PD+ F++ +N G LKTAK LD E ++ + V E
Sbjct: 252 TPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFE--AKQQYILHVRVENEE--- 306
Query: 246 GKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDI 287
P + + A VTV ++DVN++ P+F E V +PED
Sbjct: 307 --PFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDF 345
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
N PIF+ + E+ E +G + A++ D + I Y + + + I+ TG
Sbjct: 327 NEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETG 386
Query: 215 ELKTAKPLDRE 225
+ T +DRE
Sbjct: 387 AIFTRAEMDRE 397
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 107
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEF-----FLI 209
P F F G + E A G+ V++V A D D +I Y +++ E F +
Sbjct: 108 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 167
Query: 210 DSNTGELKT-AKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268
+ +TG + LDRE + +L V+A + LQ + + A+ +T+ D+N
Sbjct: 168 NRDTGVISVLTSGLDRE----SYPTYTLVVQAAD------LQGEGLSTTAKAVITVKDIN 217
Query: 269 DSPPVFN 275
D+ PVFN
Sbjct: 218 DNAPVFN 224
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 88 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 60/181 (33%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + + + ED ++ +T+ D
Sbjct: 53 FIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVITVTD 102
Query: 267 VNDSPPVFNRKEYVVHIPE-DIPDGSL-----------------------------LPDL 296
ND+ P F ++ + + E +P S+ LP
Sbjct: 103 QNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK 162
Query: 297 DMIVTDSD--------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPS 336
+M + D LV+ E LS++A ++ V D+NDN P
Sbjct: 163 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV 222
Query: 337 F 337
F
Sbjct: 223 F 223
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 119/309 (38%), Gaps = 71/309 (22%)
Query: 6 NSPPSFTTDVNSPL----VVEENTPPGTIVSTLEGVDPE-GSKVKYGIYGTD---RFSLD 57
+ PP F +N PL VV+ N PP T V TL+ DP+ + Y I RF +D
Sbjct: 106 DEPPYF---INRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVD 162
Query: 58 RDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVA 117
SG +R GTD F LD +
Sbjct: 163 ERSGVVRTR----------------------------------GTDLFQLD-------ME 181
Query: 118 QPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGS 177
LY + K VD R T + + I G P F S+ EI E+ S
Sbjct: 182 YVLYVKAEDQNGK--VDDRRFQSTPEERLSIVGG---KRAPQFYMPSYEAEIPENQKKDS 236
Query: 178 VVLRVEAKDGDLAQPRSIYYDLLTNPDEF--FLIDSNTGELKTAKPLDREILGGTNGVIS 235
++ ++AK R I Y L F I +G +K AK LD E L + V S
Sbjct: 237 DIISIKAKS---FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH-VYS 292
Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH-IPEDIPDGSLLP 294
L V A E G D +T+ + DVND+ P F +Y H + EDIP G+ +
Sbjct: 293 LIVTATEDSGGFSTSVD-------LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345
Query: 295 DLDMIVTDS 303
+ + +DS
Sbjct: 346 RVKAMDSDS 354
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 306 VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTG-NVLETAQAGTSITTITALDS 364
+I T + S+S L ++VTDVNDN P FEL Y NV E GTSI + A+DS
Sbjct: 293 LIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDS 352
Query: 365 DGG 367
D G
Sbjct: 353 DSG 355
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 140 HTSKTNVDIRVGDVQNTPPIFINSSFSGE--IMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
+T V I V DV + PP FIN + + +AP + V ++A+D D +I+Y
Sbjct: 91 YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHY 148
Query: 198 DLLTNPD-EFFLIDSNTGELKT 218
++ + F +D +G ++T
Sbjct: 149 FIVRDRTGGRFEVDERSGVVRT 170
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 88 VDPEGSKVKYGIYGTDW---FSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSK- 143
+DP K+KY + G F ++ +G++ + L RE+ + T + T+K
Sbjct: 28 LDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAV--DFETNKP 85
Query: 144 ----TNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIY 196
+ I+V D+ + P F+N + + E + +G+ V V A D D +
Sbjct: 86 LEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLV 145
Query: 197 YDLLTNPDEFFLIDSNTGELKTAKP-LDREILGGTNGVISLTVRAREMVDGKPLQEDQAT 255
Y +L +F I+ T +KTA P +DRE + ++A++M +
Sbjct: 146 YSILEG-QPYFSIEPETAIIKTALPNMDRE----AKEEYLVVIQAKDMGG----HSGGLS 196
Query: 256 AFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL 293
+TVT+ DVND+PP F + Y +PED+ G+ +
Sbjct: 197 GTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI 234
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 308 AEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGG 367
A + T + L + I++V D+NDN P F Y V E + GTS+T +TA D+D
Sbjct: 77 AVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDP 136
Query: 368 DYG-TGGIVYELL 379
YG + +VY +L
Sbjct: 137 VYGNSAKLVYSIL 149
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 57/209 (27%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F I+ TG++ K LDRE +LT +A + KPL+ ++ + + D
Sbjct: 48 FQINDITGDIHAIKRLDRE----EKAEYTLTAQAVDFETNKPLEPP-----SEFIIKVQD 98
Query: 267 VNDSPPVFNRKEYVVHIPE-----------------------------DIPDG------- 290
+ND+ P F Y +PE I +G
Sbjct: 99 INDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIE 158
Query: 291 -------SLLPDLDMIVTDSDLVIAEET----HTAEKLSSSATLIVQVTDVNDNVPSFEL 339
+ LP++D + LV+ + H+ LS + TL V +TDVNDN P F
Sbjct: 159 PETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSG-GLSGTTTLTVTLTDVNDNPPKFAQ 217
Query: 340 NAYTGNVLETAQAGTSITTITALDSDGGD 368
+ Y +V E GT+I + A D D G+
Sbjct: 218 SLYHFSVPEDVVLGTAIGRVKANDQDIGE 246
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 313 TAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYG-T 371
T L + IV+V D+NDN P F Y NV E + GTS+ +TA D+D YG +
Sbjct: 83 TNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNS 142
Query: 372 GGIVYELL 379
+VY +L
Sbjct: 143 AKLVYSIL 150
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 105 FSLDRDSGELRVAQPLYRED-GHHTSKTNVDIRDGHHTSK--TNVDIRVGDVQNTPPIFI 161
F +D SG + + L RE+ +T RD + + + ++V D+ + PP F+
Sbjct: 49 FVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFL 108
Query: 162 NSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEFFLIDSNTGELKT 218
+ + + E + +G+ V++V A D D + Y +L +F +++ TG ++T
Sbjct: 109 HEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRT 167
Query: 219 AKP-LDRE 225
A P +DRE
Sbjct: 168 ALPNMDRE 175
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 206 FFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTIL 265
F+ID +G + K LDRE +L +A + +PL+ ++ V +
Sbjct: 48 IFVIDDKSGNIHATKTLDRE----ERAQYTLMAQAVDRDTNRPLEPP-----SEFIVKVQ 98
Query: 266 DVNDSPPVFNRKEYVVHIPE 285
D+ND+PP F + Y ++PE
Sbjct: 99 DINDNPPEFLHEIYHANVPE 118
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 312 HTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYG- 370
T + + I+++ D+NDN P F + YT V E A GT + +TA D+D YG
Sbjct: 81 RTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140
Query: 371 TGGIVYELL 379
+ +VY +L
Sbjct: 141 SAKVVYSIL 149
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 205 EFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTI 264
+ F+I+ NTG+++ K LDRE V L +A G+P++ + ++ + I
Sbjct: 46 DLFIINENTGDIQATKRLDRE----EKPVYILRAQAVNRRTGRPVEPE-----SEFIIKI 96
Query: 265 LDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
D+ND+ P+F + Y +PE G+ + + + TD+D
Sbjct: 97 HDINDNEPIFTKDVYTATVPEMADVGTFV--VQVTATDAD 134
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 103 DWFSLDRDSGELRVAQPLYREDG--HHTSKTNVDIRDGHHTS-KTNVDIRVGDVQNTPPI 159
D F ++ ++G+++ + L RE+ + V+ R G ++ I++ D+ + PI
Sbjct: 46 DLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPI 105
Query: 160 FINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEFFLIDSNTGEL 216
F ++ + E A +G+ V++V A D D + Y +L +F ++S TG +
Sbjct: 106 FTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-QPYFSVESETGII 164
Query: 217 KTA-KPLDRE 225
KTA +DRE
Sbjct: 165 KTALLNMDRE 174
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
+++ V D+NDN P F + G+V E ++ GT + T+TA+D+D + G + Y +L +
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ 152
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F+I+ +G+L KPLDRE++ +RA VD + +Q + +
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIA------RFHLRA-HAVD---INGNQVENPIDIVI 96
Query: 263 TILDVNDSPPVFNRKEYVVHIPE 285
++D+ND+ P F + + +PE
Sbjct: 97 NVIDMNDNRPEFLHQVWNGSVPE 119
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 91 EGSKVKYGIYGTDW-----FSLDRDSGELRVAQPLYRED--GHHTSKTNVDIRDGHHTSK 143
EG+K + G D F ++ SG++ V +PL RE + D+
Sbjct: 31 EGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGP 90
Query: 144 TNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS----IYYDL 199
+DI V D + P+F + G +ME +P G+ V+R+ A D D P + + Y++
Sbjct: 91 VRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDAD--DPSTDNALLRYNI 148
Query: 200 L----TNPD-EFFLIDSNTGELKTAKP---LDREILGGTNGVISLTVRAREM 243
L T P F ID G++ T LDRE + L + A++M
Sbjct: 149 LKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPK--YELVIEAKDM 198
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 179 VLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238
V+R E +G A+ R + +P F I+ +G++ +PLDRE + + +T
Sbjct: 24 VIRSEGTEG--AKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTD 81
Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDM 298
+ +++DG P++ D ++++D ND+ P+F YV H+ E P G+ + + M
Sbjct: 82 LSGKIIDG-PVRLD---------ISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTV--MRM 129
Query: 299 IVTDSD 304
D+D
Sbjct: 130 TAFDAD 135
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
L + V D NDN P F+ Y G+V+E + GT++ +TA D+D + Y +L +
Sbjct: 93 LDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQ 151
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
+++ V D+NDN P F + G+V E ++ GT + T+TA+D+D + G + Y +L +
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ 152
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-----N 202
I V DV + PP F +F GE+ E+ + +V + D D QP + ++ +
Sbjct: 211 ITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKD--QPHTPAWNAAYRISGGD 267
Query: 203 PDEFFLI----DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFA 258
P F I +SN G + KP+D E TN + LTV A V + + A
Sbjct: 268 PTGRFAILTDPNSNDGLVTVVKPIDFE----TNRMFVLTVAAENQVPLAKGIQHPPQSTA 323
Query: 259 QVTVTILDVNDSP-----PVFNRKEYVVH 282
V+VT++DVN++P P R+E +H
Sbjct: 324 TVSVTVIDVNENPYFAPNPKIIRQEEGLH 352
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 53/225 (23%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILG---------GTNG-----VISLTVRAREMVDGKP 248
P F+I+ +G+L KPLDRE++ NG I + + +M D +P
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 249 ----------LQEDQATAFAQVTVTILDVND--------------------SPPVF---N 275
+ E +TVT +D +D SP +F N
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINN 166
Query: 276 RKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVP 335
++ + + D + +I+ +D+ E + LS++AT ++ VTDVNDN P
Sbjct: 167 ETGDIITVAAGL-DREKVQQYTLIIQATDM----EGNPTYGLSNTATAVITVTDVNDNPP 221
Query: 336 SFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLG 380
F + G V E + + +T D D Y + G
Sbjct: 222 EFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISG 265
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 176 GSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVIS 235
G+++ + A+D D ++I Y L++P + ID G++ T LDRE N + +
Sbjct: 354 GTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYN 413
Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVND-SPPVFNRKEYVVHIPE 285
T A + +G P T + + +LD+ND +P V ++ PE
Sbjct: 414 ATFLASD--NGIPPMSGTGT----LQIYLLDINDNAPQVLPQEAETCETPE 458
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 89 DPEGSKVKYGIYGTDW-------FSLDRDSGELRVAQPLYRED-------GHHTSKTNVD 134
D EG KV Y I G F ++R++G L+V +PL RE H S
Sbjct: 29 DKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNA 87
Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQ 191
+ D + I V D + P F F G +ME A G+ V+ V A D D
Sbjct: 88 VEDPME-----ILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTY 142
Query: 192 PRSIYYDLLTN----PDE-FFLIDSNTGELKTAKP-LDRE 225
+I Y +L+ PD+ F I+ NTG + LDRE
Sbjct: 143 NAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRE 182
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGT--GGIVYELLG 380
+++ VTD NDN P F + G+V+E A GTS+ +TA D+D D T I Y +L
Sbjct: 94 ILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDAD-DDVNTYNAAIAYTILS 152
Query: 381 E 381
+
Sbjct: 153 Q 153
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 201 TNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQV 260
T P F+I+ TG LK +PLDRE + T + S V + P++ +
Sbjct: 45 TPPVGVFIIERETGWLKVTEPLDRERIA-TYTLFSHAVSSNGNAVEDPME---------I 94
Query: 261 TVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
+T+ D ND+ P F ++ + + E G+ + +++ TD+D
Sbjct: 95 LITVTDQNDNKPEFTQEVFKGSVMEGALPGTSV--MEVTATDAD 136
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 52 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 106
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEF-----FLI 209
P F F G + E A G+ V++V A D D +I Y +++ E F +
Sbjct: 107 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 166
Query: 210 DSNTGELKT-AKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268
+ +TG + LDRE + +L V+A + LQ + + A+ +T+ D+N
Sbjct: 167 NRDTGVISVLTSGLDRE----SYPTYTLVVQAAD------LQGEGLSTTAKAVITVKDIN 216
Query: 269 DS 270
D+
Sbjct: 217 DN 218
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 87 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 137
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + + + ED ++ +T+ D
Sbjct: 52 FIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVITVTD 101
Query: 267 VNDSPPVFNRKEY 279
ND+ P F ++ +
Sbjct: 102 QNDNRPEFTQEVF 114
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 317 LSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
L + I++V+D+NDN P F + G+V E ++ GTS+T +TA D+D
Sbjct: 84 LEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDAD 132
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPD 204
I+V D+ + PIF+ F+G + E + +G+ V +V A+D D +A ++ Y ++ +
Sbjct: 92 IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG-N 150
Query: 205 EFFLIDSNTGELKTAKP-LDRE 225
E+F +D ++G + TA+ LDRE
Sbjct: 151 EYFTVD-DSGVIFTARADLDRE 171
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 105 FSLDRDSGELRVAQPLYRE--DGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFIN 162
F ++ ++G + V +PL RE D + S V + I V D + P F
Sbjct: 57 FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ 116
Query: 163 SSFSGEIMESAPIGSVVLRVEAKDGD-----LAQPRSIYYDLLTNPDE----FFLIDSNT 213
F G + E G+ V+ V A D D L S Y L +P+E F I+ T
Sbjct: 117 DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLS-YSILKQDPEEPIPNLFTINRET 175
Query: 214 GELK-TAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
G + LDRE +LTV+A ++ +G L + + + I D ND+ P
Sbjct: 176 GVISLIGTGLDREKFPE----YTLTVQATDL-EGAGL-----SVEGKAIIQITDANDNAP 225
Query: 273 VFNRKEYVVHIPED 286
+F+ K Y +PE+
Sbjct: 226 IFDPKTYTALVPEN 239
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGG-DYGTGGIVYELLGE 381
+ + V D NDN P F + + G+V E Q GT + ++A D D D G + Y +L +
Sbjct: 100 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 159
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 61/226 (26%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F I+ TG + +PLDRE V+S + +G P++E ++T+
Sbjct: 53 PQGVFRIEWETGWMLVTRPLDREEYDKY--VLSSHAVSE---NGSPVEEPM-----EITI 102
Query: 263 TILDVNDSPPVFNRKEYVVHIPEDIPDGSL------------------------------ 292
++D ND+ P F + + + E + G+
Sbjct: 103 NVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE 162
Query: 293 --LPDLDMIVTDSDLV-----------IAEETHTAEK-------LSSSATLIVQVTDVND 332
+P+L I ++ ++ E T T + LS I+Q+TD ND
Sbjct: 163 EPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAND 222
Query: 333 NVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
N P F+ YT V E + G + ++ D D VY++
Sbjct: 223 NAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKI 267
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 23/166 (13%)
Query: 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDL--AQPRSIYYDLLTNPDE 205
I++ D + PIF +++ + E+ IG V R+ D D+ Y + N
Sbjct: 215 IQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG 273
Query: 206 FFLI----DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVT 261
FF I +SN G L TAK LD E+ V+ +TV + +P T+ A VT
Sbjct: 274 FFNITTDPESNQGILTTAKGLDFELR--KQYVLQITVE-----NAEPFSVPLPTSTATVT 326
Query: 262 VTILDVNDSP---PVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
VT+ DVN++P P +R V + ED+ G + + ++ D D
Sbjct: 327 VTVEDVNEAPFFVPAVSR----VDVSEDLSRGEKI--ISLVAQDPD 366
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
N P F+ + ++ E G ++ + A+D D Q + + Y + +P + ++ + G
Sbjct: 333 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 392
Query: 215 ELKTAKPLDRE---ILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSP 271
+ LDRE + T VI L DG + T + + +LDVND+
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTD-----DGVSV----GTGTGTLILHVLDVNDNG 443
Query: 272 PV 273
PV
Sbjct: 444 PV 445
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
+++ V D+NDN P F + G+V E ++ GT + T+TA+D+D + G + Y ++ +
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQ 152
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F+I+ +G+L KPLDRE++ +RA VD + +Q + +
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIA------RFHLRA-HAVD---INGNQVENPIDIVI 96
Query: 263 TILDVNDSPPVFNRKEYVVHIPE 285
++D+ND+ P F + + +PE
Sbjct: 97 NVIDMNDNRPEFLHQVWNGSVPE 119
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 90 PEGSKVKYGIYGTDW-----FSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTS-- 142
PEGSK + G D F ++ ++G + V + L RE T + V+ D +
Sbjct: 31 PEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRE-TIATYQLYVETTDASGKTLE 89
Query: 143 -KTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD--LAQPRSIYYDL 199
+++ V D + PIF + G +ME +P G+ V+R+ A D D + Y++
Sbjct: 90 GPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNI 149
Query: 200 LTN-PDE----FFLIDSNTGELKTA---KPLDREILGGTNGVISLTVRAREM 243
PD+ F ID G++ T LDRE L N L + A++M
Sbjct: 150 RQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETL--ENPKYELIIEAQDM 199
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 313 TAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
+ + L L V V D NDN P F Y G+V+E + GT++ +TA D+D
Sbjct: 84 SGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD 136
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 202 NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGK-PLQEDQATAFAQV 260
+P F I+ NTG + + LDRE + + T + + ++G PL+
Sbjct: 46 DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLE---------- 95
Query: 261 TVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
V ++D ND+ P+F Y+ H+ E P G+ + + M D+D
Sbjct: 96 -VIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV--MRMTAFDAD 136
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 21/193 (10%)
Query: 105 FSLDRDSGELRVAQPLYRE--DGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFIN 162
F ++ ++G + V +PL RE D + S V + I V D + P F
Sbjct: 206 FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ 265
Query: 163 SSFSGEIMESAPIGSVVLRVEAKDGD--LAQPRSI--YYDLLTNPDE----FFLIDSNTG 214
F G + E G+ V+ V A D D + + Y L +P+E F I+ TG
Sbjct: 266 DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETG 325
Query: 215 ELK-TAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPV 273
+ LDRE +LTV+A ++ +G L + + + I D ND+ P+
Sbjct: 326 VISLIGTGLDREKFPE----YTLTVQATDL-EGAGL-----SVEGKAIIQITDANDNAPI 375
Query: 274 FNRKEYVVHIPED 286
F+ K Y +PE+
Sbjct: 376 FDPKTYTALVPEN 388
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGG-DYGTGGIVYELLGE 381
+ + V D NDN P F + + G+V E Q GT + ++A D D D G + Y +L +
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 308
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 61/226 (26%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F I+ TG + +PLDRE V+S + +G P++E ++T+
Sbjct: 202 PQGVFRIEWETGWMLVTRPLDREEYDKY--VLSSHAVSE---NGSPVEEPM-----EITI 251
Query: 263 TILDVNDSPPVFNRKEYVVHIPEDIPDGSL------------------------------ 292
++D ND+ P F + + + E + G+
Sbjct: 252 NVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE 311
Query: 293 --LPDLDMIVTDSDLV-----------IAEETHTAEK-------LSSSATLIVQVTDVND 332
+P+L I ++ ++ E T T + LS I+Q+TD ND
Sbjct: 312 EPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAND 371
Query: 333 NVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
N P F+ YT V E + G + ++ D D VY++
Sbjct: 372 NAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKI 416
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
N P F+ + ++ E G ++ + A+D D Q + + Y + +P + ++ + G
Sbjct: 482 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 541
Query: 215 ELKTAKPLDRE---ILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSP 271
+ LDRE + T VI L DG + T + + +LDVND+
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTD-----DGVSV----GTGTGTLILHVLDVNDNG 592
Query: 272 PV 273
PV
Sbjct: 593 PV 594
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 23/166 (13%)
Query: 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDL--AQPRSIYYDLLTNPDE 205
I++ D + PIF +++ + E+ IG V R+ D D+ Y + N
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG 422
Query: 206 FFLI----DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVT 261
FF I +SN G L TAK LD E+ V+ +TV + +P T+ A VT
Sbjct: 423 FFNITTDPESNQGILTTAKGLDFELR--KQYVLQITVE-----NAEPFSVPLPTSTATVT 475
Query: 262 VTILDVNDSP---PVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
VT+ DVN++P P +R V + ED+ G + + ++ D D
Sbjct: 476 VTVEDVNEAPFFVPAVSR----VDVSEDLSRGEKI--ISLVAQDPD 515
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 105 FSLDRDSGELRVAQPLYRED-GHHTSKTNVDIRDGHHTSK-TNVDIRVGDVQNTPPIFIN 162
F ++R++G L+V QPL RE + ++ D +G + I V D + P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 163 SSFSGEIMESAPIGSVVLRVEAKDGD 188
F G + E A G+ V++V A D D
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 310 ETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
++ E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 81 DSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + + +G+ +++ ++ +T+ D
Sbjct: 51 FIIERETGWLKVTQPLDREAIAK-----YILYSHADSSNGEAVEDPM-----EIVITVTD 100
Query: 267 VNDSPPVFNRKEY 279
ND+ P F ++ +
Sbjct: 101 QNDNRPEFTQEVF 113
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 311 THTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
+ E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 84 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 107
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
P F F G + E A G+ V++V A D D
Sbjct: 108 PEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + S V + P+ ++ +T+ D
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYI-LYSHAVSSNGEAVEDPM---------EIVITVTD 102
Query: 267 VNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
ND+ P F ++ + + E G+ + + + TD+D
Sbjct: 103 QNDNRPEFTQEVFEGSVAEGAVPGTSV--MKVSATDAD 138
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 105
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
P F F G + E A G+ V++V A D D
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 86 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + + + ED ++ +T+ D
Sbjct: 51 FIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVITVTD 100
Query: 267 VNDSPPVFNRKEY 279
ND+ P F ++ +
Sbjct: 101 QNDNRPEFTQEVF 113
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 50 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 104
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
P F F G + E A G+ V++V A D D
Sbjct: 105 PEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 135
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 85 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 135
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F+I+ TG LK +PLDRE + + + + ED ++ +
Sbjct: 46 PVGVFIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVI 95
Query: 263 TILDVNDSPPVFNRKEY 279
T+ D ND+ P F ++ +
Sbjct: 96 TVTDQNDNRPEFTQEVF 112
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 105
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEF-----FLI 209
P F F G + E A G+ V++V A D D +I Y +++ E F +
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 210 DSNTGELKT-AKPLDRE 225
+ +TG + LDRE
Sbjct: 166 NRDTGVISVLTSGLDRE 182
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
+++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F+I+ TG LK +PLDRE + + + + ED ++ +
Sbjct: 47 PVGVFIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVI 96
Query: 263 TILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
T+ D ND+ P F ++ + + E G+ + + + TD+D
Sbjct: 97 TVTDQNDNRPEFTQEVFEGSVAEGAVPGTSV--MKVSATDAD 136
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 105
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
P F F G + E A G+ V++V A D D
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 86 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + + + ED ++ +T+ D
Sbjct: 51 FIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVITVTD 100
Query: 267 VNDSPPVFNRKEY 279
ND+ P F ++ +
Sbjct: 101 QNDNRPEFTQEVF 113
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E ++ +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 86 EAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPME-----IVITVTDQNDNR 105
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
P F F G + E A G+ V++V A D D
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F+I+ TG LK +PLDRE + + S V + P+ ++ +
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYI-LYSHAVSSNGEAVADPM---------EIVI 96
Query: 263 TILDVNDSPPVFNRKEY 279
T+ D ND+ P F ++ +
Sbjct: 97 TVTDQNDNRPEFTQEVF 113
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 107
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
P F F G + E A G+ V++V A D D
Sbjct: 108 PEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 88 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F+I+ TG LK +PLDRE + + + + ED ++ +
Sbjct: 49 PVGVFIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVI 98
Query: 263 TILDVNDSPPVFNRKEY 279
T+ D ND+ P F ++ +
Sbjct: 99 TVTDQNDNRPEFTQEVF 115
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 93 SKVKYGIYGTDW-------FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDG 138
+KV Y I G F ++R++G L+V QPL RE H S + D
Sbjct: 32 TKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDP 91
Query: 139 HHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
+ I V D + P F F G + E A G+ V++V A D D
Sbjct: 92 ME-----IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 86 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + + + ED ++ +T+ D
Sbjct: 51 FIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVITVTD 100
Query: 267 VNDSPPVFNRKEY 279
ND+ P F ++ +
Sbjct: 101 QNDNRPEFTQEVF 113
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 93 SKVKYGIYGTDW-------FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDG 138
+KV Y I G F ++R++G L+V QPL RE H S + D
Sbjct: 32 TKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDP 91
Query: 139 HHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
+ I V D + P F F G + E A G+ V++V A D D
Sbjct: 92 ME-----IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 86 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F+I+ TG LK +PLDRE + + + + ED ++ +
Sbjct: 47 PVGVFIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVI 96
Query: 263 TILDVNDSPPVFNRKEY 279
T+ D ND+ P F ++ +
Sbjct: 97 TVTDQNDNRPEFTQEVF 113
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
F ++R++G L+V QPL RE H S + D + I V D +
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 105
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD 188
P F F G + E A G+ V++V A D D
Sbjct: 106 PEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
E + +++ VTD NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 86 EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
F+I+ TG LK +PLDRE + + + + ED ++ +T+ D
Sbjct: 51 FIIERETGWLKVTQPLDRE------AIAKYILYSHAVSSNGEAVEDP----MEIVITVTD 100
Query: 267 VNDSPPVFNRKEY 279
ND+ P F ++ +
Sbjct: 101 QNDNRPEFTQEVF 113
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 6 NSPPSFTTDV-NSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDR---FSLDRDSG 61
N P FT ++ L++ E+TP G+ V+ L D + + +G+ G + F+++ D+G
Sbjct: 4 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTG 63
Query: 62 ELRVAQPLDREYNSTNT 78
+ + QPLDRE S T
Sbjct: 64 VVWLRQPLDRETKSEFT 80
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
N P F N F ++ E P+GS V ++ A+D D ++ FF ++ +
Sbjct: 4 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVSGEEASRFFAVEPD 61
Query: 213 TGELKTAKPLDRE 225
TG + +PLDRE
Sbjct: 62 TGVVWLRQPLDRE 74
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY----DLLTNPDEFFLIDSNT 213
P+F I E+AP+G+ V+++ A D D+ I Y + F +++ T
Sbjct: 12 PVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTT 71
Query: 214 GELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268
G + + LDRE + +TV A DG A A VT+ + DVN
Sbjct: 72 GLITVQRSLDRE----ETAIHKVTVLAS---DGS-----STPARATVTINVTDVN 114
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
ND+ PVF + VHIPE+ P G+ + + + TD+D+
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSV--IQLHATDADI 43
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 21 VEENTPPGTIVSTLEGVDPE---GSKVKYGIYG------TDR-FSLDRDSGELRVAQPLD 70
+ EN P GT V L D + ++++Y I+G T R F+L+ +G + V + LD
Sbjct: 23 IPENAPVGTSVIQLHATDADIGSNAEIRY-IFGAQVAPATKRLFALNNTTGLITVQRSLD 81
Query: 71 REYNSTNTSTIV 82
RE + + T++
Sbjct: 82 REETAIHKVTVL 93
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 101/275 (36%), Gaps = 70/275 (25%)
Query: 6 NSPPSFTTDVNSPL----VVEENTPPGTIVSTLEGVDPE-GSKVKYGIYGTD---RFSLD 57
+ PP F +N PL VV+ N PP T V TL+ DP+ + Y I RF +D
Sbjct: 101 DEPPYF---INRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVD 157
Query: 58 RDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVA 117
SG +R GTD F LD +
Sbjct: 158 ERSGVVRTR----------------------------------GTDLFQLD-------ME 176
Query: 118 QPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGS 177
LY + K VD R T + + I G P F S+ EI E+ S
Sbjct: 177 YVLYVKAEDQNGK--VDDRRFQSTPEERLSIVGG---KRAPQFYMPSYEAEIPENQKKDS 231
Query: 178 VVLRVEAKDGDLAQPRSIYYDLLTNPDEF--FLIDSNTGELKTAKPLDREILGGTNGVIS 235
++ ++AK R I Y L F I +G +K AK LD E L + V S
Sbjct: 232 DIISIKAKS---FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH-VYS 287
Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDS 270
L V A E G D +T+ + DVND+
Sbjct: 288 LIVTATEDSGGFSTSVD-------LTIRVTDVNDN 315
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 139 HHTSKTNVDIRVGDVQNTPPIFINSSFSGE--IMESAPIGSVVLRVEAKDGDLAQPRSIY 196
+T V I V DV + PP FIN + + +AP + V ++A+D D +I+
Sbjct: 85 KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIH 142
Query: 197 YDLLTNPD-EFFLIDSNTGELKT 218
Y ++ + F +D +G ++T
Sbjct: 143 YFIVRDRTGGRFEVDERSGVVRT 165
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 203 PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTV 262
P F+I+ +G+L KPLDRE++ +RA VD + +Q + +
Sbjct: 49 PTGIFIINPISGQLSVTKPLDRELIA------RFHLRA-HAVD---INGNQVENPIDIVI 98
Query: 263 TILDVNDSPPVF 274
++D+ND+ P F
Sbjct: 99 NVIDMNDNRPEF 110
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 PGTIVSTLEGVDPEGSKVKYGIYGTDR-------FSLDRDSGELRVAQPLDREYNSTNT 78
P +V D EG KV Y I G F ++R++G L+V +PLDRE +T T
Sbjct: 19 PKNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYT 76
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 201 TNPDEFFLIDSNTGELKTAKPLDRE 225
T P F+I+ TG LK +PLDRE
Sbjct: 46 TPPVGVFIIERETGWLKVTEPLDRE 70
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 PGTIVSTLEGVDPEGSKVKYGIYGTDR-------FSLDRDSGELRVAQPLDREYNSTNT 78
P +V D EG KV Y I G F ++R++G L+V +PLDRE +T T
Sbjct: 19 PKNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYT 76
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 201 TNPDEFFLIDSNTGELKTAKPLDRE 225
T P F+I+ TG LK +PLDRE
Sbjct: 46 TPPVGVFIIERETGWLKVTEPLDRE 70
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 PGTIVSTLEGVDPEGSKVKYGIYGTDR-------FSLDRDSGELRVAQPLDREYNSTNT 78
P +V D EG KV Y I G F ++R++G L+V +PLDRE +T T
Sbjct: 22 PKNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYT 79
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 201 TNPDEFFLIDSNTGELKTAKPLDRE 225
T P F+I+ TG LK +PLDRE
Sbjct: 49 TPPVGVFIIERETGWLKVTEPLDRE 73
>pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
pdb|2GV9|B Chain B, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
Length = 1193
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 25 TPPGTIVSTLEGVDPEGSKVKYGIYGTDRF 54
TP GT++ TL G+ PEG +V +YGT ++
Sbjct: 134 TPTGTVI-TLLGLTPEGHRVAVHVYGTRQY 162
Score = 32.0 bits (71), Expect = 0.65, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 63 LRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGT-DWFSLDRD 110
+R AQ R ++ + V+TL G+ PEG +V +YGT +F ++++
Sbjct: 120 MRAAQFHARFMDAITPTGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKE 168
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVY 376
NDN P FE + Y ++ E + GT I + A D D G G V+
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVF 53
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 PGTIVSTLEGVDPEGSKVKYGIYGTDR-------FSLDRDSGELRVAQPLDREYNSTNT 78
P +V D EG KV Y I G F ++R++G L+V +PLDRE +T T
Sbjct: 22 PKNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYT 79
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 201 TNPDEFFLIDSNTGELKTAKPLDRE 225
T P F+I+ TG LK +PLDRE
Sbjct: 49 TPPVGVFIIERETGWLKVTEPLDRE 73
>pdb|2OMW|B Chain B, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 105
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 27 PGTIVSTLEGVDPEGSKVKYGI--YGTDR-----FSLDRDSGELRVAQPLDRE 72
P +V D E +KV Y I G D+ F ++R++G L+V QPLDRE
Sbjct: 22 PKNLVQIKSNRDKE-TKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 73
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 20/79 (25%)
Query: 203 PDEFFLIDSNTGELKTAKPLDRE-----ILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
P F+ + +TGEL LDRE +L G +L R + KPL+
Sbjct: 59 PFGIFVFNKDTGELNVTSILDREETPFFLLTG----YALDARGNNVE--KPLE------- 105
Query: 258 AQVTVTILDVNDSPPVFNR 276
+ + +LD+ND+ PVF +
Sbjct: 106 --LRIKVLDINDNEPVFTQ 122
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 14/67 (20%)
Query: 17 SPLVVEENTPP------GTIVSTLEGVDPEGSKVKYGIYGTDR-----FSLDRDSGELRV 65
+P+++ EN P G ++ + EG EG+K + G D+ F ++ SG++ V
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRS-EGT--EGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61
Query: 66 AQPLDRE 72
+PLDRE
Sbjct: 62 TRPLDRE 68
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGG----DYGTGGIVYELLG 380
+ V D NDN P+F+ +Y V E GT+I T D G D G G +
Sbjct: 115 IVVRDRNDNSPTFKHESYYATVNELTPVGTTI--FTGFSGDNGATDIDDGPNGQI----- 167
Query: 381 EYGIMY 386
EY I Y
Sbjct: 168 EYVIQY 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,623,086
Number of Sequences: 62578
Number of extensions: 566753
Number of successful extensions: 1239
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 189
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)