Query psy4200
Match_columns 388
No_of_seqs 251 out of 1536
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 19:26:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q55_A EP-cadherin, C-cadherin 100.0 3.4E-57 1.1E-61 471.4 26.6 360 1-384 27-532 (880)
2 3q2v_A Cadherin-1; cell adhesi 100.0 2.3E-55 7.9E-60 438.4 32.4 315 1-383 98-481 (550)
3 3q2w_A Cadherin-2; cell adhesi 100.0 7.2E-55 2.5E-59 435.7 30.9 315 1-380 98-484 (559)
4 1l3w_A EP-cadherin, C-cadherin 100.0 6.9E-56 2.4E-60 441.5 22.8 315 1-383 104-486 (546)
5 1q55_A EP-cadherin, C-cadherin 100.0 3.6E-54 1.2E-58 448.6 22.9 316 1-384 253-636 (880)
6 3q2v_A Cadherin-1; cell adhesi 100.0 2.4E-52 8.1E-57 416.7 34.3 300 19-384 7-377 (550)
7 3q2w_A Cadherin-2; cell adhesi 100.0 2.1E-51 7.3E-56 410.5 34.1 303 19-384 7-383 (559)
8 1l3w_A EP-cadherin, C-cadherin 100.0 5.1E-52 1.7E-56 413.7 29.2 303 15-384 10-383 (546)
9 3ubh_A Neural-cadherin; cell a 100.0 9.9E-50 3.4E-54 385.3 34.7 292 28-381 8-367 (419)
10 3ubh_A Neural-cadherin; cell a 100.0 4.7E-45 1.6E-49 352.5 32.8 243 1-304 101-353 (419)
11 2a62_A Cadherin-8; extracellul 100.0 1.2E-42 4E-47 323.3 22.8 226 19-304 7-243 (322)
12 3mvs_A Cadherin-23, otocadheri 100.0 6.1E-42 2.1E-46 300.0 25.0 205 5-271 2-210 (210)
13 3ubf_A Neural-cadherin; cell a 100.0 1.8E-41 6.2E-46 315.6 26.1 253 16-334 9-316 (316)
14 2x2u_A Proto-oncogene tyrosine 100.0 7.3E-42 2.5E-46 306.2 13.3 208 10-275 2-245 (246)
15 3ubf_A Neural-cadherin; cell a 100.0 8.3E-39 2.9E-43 297.7 25.6 213 1-271 96-316 (316)
16 2a4e_A Cadherin-11; dimer, cal 100.0 6.2E-38 2.1E-42 274.8 24.6 199 16-273 6-215 (215)
17 2a62_A Cadherin-8; extracellul 100.0 2E-38 6.8E-43 294.8 17.2 210 1-265 96-322 (322)
18 3qrb_A Cadherin-1; cell adhesi 100.0 4.3E-35 1.5E-39 257.2 21.5 188 19-266 7-213 (213)
19 2qvi_A Cadherin-2; beta barrel 100.0 8E-35 2.7E-39 255.3 20.6 191 19-266 7-215 (215)
20 3k5r_A Cadherin 13; mouse, str 100.0 1.4E-34 4.8E-39 254.8 20.9 192 19-266 8-218 (218)
21 3ppe_A Vascular endothelial ca 100.0 1.9E-33 6.4E-38 244.5 23.9 187 19-266 7-203 (203)
22 3lnd_A CDH6 protein, cadherin 100.0 4.6E-34 1.6E-38 249.4 15.4 190 19-266 7-207 (207)
23 3mvs_A Cadherin-23, otocadheri 100.0 1.8E-30 6.2E-35 227.1 19.1 162 155-334 3-210 (210)
24 4apx_B Protocadherin-15, otoca 100.0 8.3E-30 2.8E-34 226.6 22.3 195 15-266 21-237 (242)
25 2x2u_A Proto-oncogene tyrosine 100.0 6.5E-32 2.2E-36 241.6 6.2 170 159-338 2-245 (246)
26 2a4e_A Cadherin-11; dimer, cal 100.0 1.7E-28 5.9E-33 214.8 20.7 159 164-336 5-215 (215)
27 2yst_A Protocadherin-7; BH-PCD 99.9 1.4E-27 4.9E-32 189.3 8.2 115 148-272 2-119 (119)
28 2qvi_A Cadherin-2; beta barrel 99.9 3.6E-25 1.2E-29 193.9 17.4 126 166-304 6-136 (215)
29 3ppe_A Vascular endothelial ca 99.9 1.4E-24 4.6E-29 188.6 17.5 125 165-304 5-132 (203)
30 3qrb_A Cadherin-1; cell adhesi 99.9 1.6E-24 5.4E-29 189.8 17.7 124 166-304 6-136 (213)
31 3lnd_A CDH6 protein, cadherin 99.9 7.3E-25 2.5E-29 191.0 11.5 126 166-304 6-134 (207)
32 2ee0_A Protocadherin-9; Ca dom 99.9 3.2E-25 1.1E-29 174.1 7.9 109 148-268 2-114 (114)
33 2yst_A Protocadherin-7; BH-PCD 99.9 6E-25 2.1E-29 174.1 9.4 108 1-158 4-119 (119)
34 3k5r_A Cadherin 13; mouse, str 99.9 1.2E-23 4.1E-28 184.9 17.5 123 166-304 7-136 (218)
35 2ee0_A Protocadherin-9; Ca dom 99.9 3.1E-23 1.1E-27 162.7 9.4 84 1-87 4-96 (114)
36 2yqg_A Desmoglein-2, HDGC; cad 99.9 3.2E-22 1.1E-26 159.0 5.2 113 153-276 5-122 (123)
37 4apx_B Protocadherin-15, otoca 99.8 2.8E-20 9.7E-25 165.1 16.9 134 163-304 20-160 (242)
38 2yqg_A Desmoglein-2, HDGC; cad 99.8 1.8E-20 6.1E-25 148.9 6.2 108 4-162 5-122 (123)
39 1ncg_A N-cadherin; cell adhesi 99.8 9.6E-20 3.3E-24 141.7 8.9 98 164-274 6-110 (110)
40 1ncg_A N-cadherin; cell adhesi 99.8 1.5E-18 5.2E-23 134.9 8.8 95 15-160 6-110 (110)
41 1wyj_A Protocadherin beta 14; 99.8 1.2E-19 3.9E-24 144.2 2.0 109 163-282 11-123 (125)
42 1wyj_A Protocadherin beta 14; 99.7 4.4E-19 1.5E-23 140.9 3.5 102 13-168 10-123 (125)
43 1zvn_A Mn-cadherin; strand dim 99.7 1.5E-16 5.3E-21 120.6 10.2 90 165-266 6-99 (99)
44 1zxk_A Cadherin-8; strand dime 99.7 1.6E-16 5.4E-21 120.4 10.1 91 165-266 5-98 (98)
45 3k6d_A T-cadherin; cell adhesi 99.6 1E-15 3.6E-20 116.3 10.4 88 165-266 5-99 (99)
46 3k6f_A T-cadherin; cell adhesi 99.6 2.7E-15 9.1E-20 114.3 10.9 87 166-266 7-100 (100)
47 3k6i_A T-cadherin; cell adhesi 99.6 4.2E-15 1.4E-19 113.0 12.0 87 166-266 6-99 (99)
48 3k6d_A T-cadherin; cell adhesi 99.6 2.7E-15 9.4E-20 114.0 9.8 66 19-87 7-81 (99)
49 3k6i_A T-cadherin; cell adhesi 99.6 5.8E-15 2E-19 112.2 11.0 66 19-87 7-81 (99)
50 3k6f_A T-cadherin; cell adhesi 99.6 4.1E-15 1.4E-19 113.2 10.0 66 19-87 8-82 (100)
51 2omz_B Epithelial-cadherin; le 99.6 2.5E-15 8.7E-20 115.4 8.2 89 166-267 10-105 (105)
52 2omz_B Epithelial-cadherin; le 99.6 6.7E-15 2.3E-19 113.0 8.3 67 19-87 11-86 (105)
53 1zvn_A Mn-cadherin; strand dim 99.6 2E-14 6.8E-19 109.0 10.2 66 19-87 8-80 (99)
54 1zxk_A Cadherin-8; strand dime 99.5 2E-14 6.9E-19 108.8 9.5 68 16-87 5-79 (98)
55 1wuz_A Pcdha4 protein, CNR-EC1 99.5 4.8E-15 1.6E-19 113.5 1.9 98 163-270 3-103 (103)
56 1wuz_A Pcdha4 protein, CNR-EC1 99.4 4.7E-14 1.6E-18 107.9 0.1 59 15-75 4-70 (103)
57 1op4_A Neural-cadherin; beta s 95.0 0.044 1.5E-06 44.1 6.0 77 6-87 31-108 (159)
58 2yhg_A SDE_182CT, cellulose-bi 83.5 5.1 0.00017 37.7 9.2 77 5-87 330-420 (437)
59 3pdd_A Glycoside hydrolase, fa 82.5 19 0.00066 29.6 14.9 117 231-380 60-180 (190)
60 2yhg_A SDE_182CT, cellulose-bi 79.1 14 0.00049 34.6 10.6 94 152-265 329-437 (437)
61 1op4_A Neural-cadherin; beta s 70.1 15 0.00051 29.3 7.1 79 155-243 31-109 (159)
62 3pe9_A Fibronectin(III)-like m 65.9 29 0.00099 25.1 7.4 72 176-266 17-88 (98)
63 2yrl_A KIAA1837 protein; PKD d 64.0 31 0.0011 25.0 7.4 16 139-154 82-97 (102)
64 3pdd_A Glycoside hydrolase, fa 55.0 85 0.0029 25.6 19.0 29 231-266 152-180 (190)
65 3rb5_A Na/Ca exchange protein; 54.0 97 0.0033 27.4 10.2 55 322-382 111-165 (298)
66 2yrl_A KIAA1837 protein; PKD d 49.6 36 0.0012 24.7 5.6 30 231-268 68-97 (102)
67 2kpn_A Bacillolysin; solution 40.7 61 0.0021 23.6 5.6 41 220-272 51-91 (103)
68 3rb5_A Na/Ca exchange protein; 37.4 2.1E+02 0.0073 25.1 14.8 150 4-201 5-163 (298)
69 3us9_A Sodium/calcium exchange 33.9 2E+02 0.0069 25.2 9.0 55 322-382 129-183 (295)
70 3ead_A Na/Ca exchange protein; 30.6 1.8E+02 0.0061 22.1 9.8 44 155-201 2-45 (137)
71 4a2l_A BT_4663, two-component 26.5 3.2E+02 0.011 27.3 10.3 79 178-276 709-787 (795)
72 3ott_A Two-component system se 24.8 1.8E+02 0.0063 29.0 8.1 77 180-275 676-752 (758)
73 1tw0_A Pathogenesis-related cl 23.5 84 0.0029 24.6 4.2 35 32-66 68-104 (157)
74 4a8u_A Major pollen allergen B 22.6 1.3E+02 0.0043 23.7 5.1 34 20-53 57-90 (159)
75 3gin_A Sodium/calcium exchange 22.5 1.4E+02 0.0049 23.5 5.4 60 319-383 8-67 (160)
76 2kpn_A Bacillolysin; solution 21.7 1.9E+02 0.0065 20.9 5.4 64 4-87 6-69 (103)
No 1
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=100.00 E-value=3.4e-57 Score=471.38 Aligned_cols=360 Identities=23% Similarity=0.303 Sum_probs=233.8
Q ss_pred CCccCCCCCeeccCCCcceEEe-cCCCCCcEEEEEEEECCC-CCeEEEEEecCCcEEEeCCeeEEEEcccCCCcccceee
Q psy4200 1 MEAYGNSPPSFTTDVNSPLVVE-ENTPPGTIVSTLEGVDPE-GSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNT 78 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~~~~~~v~-E~~~~gt~v~~v~a~D~D-~~~i~y~i~~~~~F~Id~~tG~i~~~~~lD~e~~~~~~ 78 (388)
+.|+|||+|.|.+..|. ++|+ |+.++|+.|++|+|+|+| ++.++|++. ...|.|++ +|.|+++++||||.. |.
T Consensus 27 ~~d~ndn~P~F~~~~y~-~~v~~e~~~~Gt~V~~v~a~D~D~n~~i~Y~~~-~~~F~Id~-~G~i~~~~~Ld~e~~--~~ 101 (880)
T 1q55_A 27 NADVSGCKPGFSSAEYI-FSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG-DSRFRVLP-DGTVLVKRHVKLHKD--TK 101 (880)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCCccCCCeEE-EEechhhCCCCCEEEEEEEEeCCCCceEEEEeC-CCCEEECC-CceEEECCccccccc--eE
Confidence 46899999999999999 9999 999999999999999998 577999985 45999998 899999999999987 55
Q ss_pred EEEEEEEEec------------------------------CCCCcccee--------------e----------------
Q psy4200 79 STIVLTLEGV------------------------------DPEGSKVKY--------------G---------------- 98 (388)
Q Consensus 79 ~~l~v~a~D~------------------------------~P~f~~~~~--------------~---------------- 98 (388)
|+|.|+|. .|.|.+..+ .
T Consensus 102 --l~V~A~D~~~~~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~r~~~~~~~~v~En~~~~~~~~v~~v 179 (880)
T 1q55_A 102 --FTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI 179 (880)
T ss_dssp --------------------------------------------------------CCCCCCEEEESSCCSSSCEEEEEC
T ss_pred --EEEEEEcCCCCeEEEEEEEEEecccccccccccccccCcccccccccccceeeccccccceEEeCCCCCCCCeEEEEE
Confidence 55555441 234543211 1
Q ss_pred -------------eecc-------eeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCC---ceeEEEEEEEEeecCC
Q psy4200 99 -------------IYGT-------DWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGH---HTSKTNVDIRVGDVQN 155 (388)
Q Consensus 99 -------------~~g~-------~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~---~~~~~~v~V~V~dvNd 155 (388)
+.|. ..|.+|+.+|.|.+.+++|||... ...|.+.|+|++ +++.+.++|+|.|+||
T Consensus 180 ~~d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~-~y~l~v~A~D~g~~~~~~~~~v~I~V~DvND 258 (880)
T 1q55_A 180 KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYD-KYVLSSHAVSENGSPVEEPMEITINVIDQND 258 (880)
T ss_dssp CCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCC-EEEEEEEEEESSSCBCSCCEEEEEEEECCSC
T ss_pred eeCCCCCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccC-ccEEEEEEEECCCCceeeeEEEEEEEEecCC
Confidence 1111 268899999999999999999874 347889999964 3567899999999999
Q ss_pred CCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCC---CCceEEEEEecC-----CCCceEEeCCeeEEEec-ccCCccc
Q psy4200 156 TPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREI 226 (388)
Q Consensus 156 ~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~-~~LD~E~ 226 (388)
|+|+|.+..|..+|.|++++|+.|+++.|+|+|.+ .|+.++|+|.++ ..++|.|++.+|.|++. ++||||.
T Consensus 259 n~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~ 338 (880)
T 1q55_A 259 NRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK 338 (880)
T ss_dssp CCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTT
T ss_pred CCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHH
Confidence 99999999999999999999999999999999998 689999999863 24799999999999995 7899999
Q ss_pred cCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC--
Q psy4200 227 LGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD-- 304 (388)
Q Consensus 227 ~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D-- 304 (388)
...|.|.|+|+|. |.+ .++++++|.|+|.|+|||+|.|....|.+.|+|+ ++|+.|+ ++.|+|+|
T Consensus 339 ----~~~y~l~V~A~D~--g~~----~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~--~v~A~D~D~~ 405 (880)
T 1q55_A 339 ----FPEYTLTVQATDL--EGA----GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQ--RLSVTDLDMP 405 (880)
T ss_dssp ----CCEEEEEEEEEHH--HHT----SCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEE--EECBCCCSCT
T ss_pred ----cceeEEEEEEEEC--CCC----CccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEE--EEEEECCCCC
Confidence 5689999999983 333 5799999999999999999999999999999999 9999997 89999988
Q ss_pred ------------------------------------------------eEEEEecCC--CceeEEEEEEEEEEEeCCCCC
Q psy4200 305 ------------------------------------------------LVIAEETHT--AEKLSSSATLIVQVTDVNDNV 334 (388)
Q Consensus 305 ------------------------------------------------~v~~~~~~~--~~~~s~~~~v~I~V~dvND~~ 334 (388)
.|.|.|.++ .+.++++++|+|+|+|+|| +
T Consensus 406 ~g~n~~v~Ysi~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~ 484 (880)
T 1q55_A 406 GTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-A 484 (880)
T ss_dssp TSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-C
T ss_pred CCCCceEEEEEecCCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-C
Confidence 122333211 2457899999999999999 9
Q ss_pred CeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200 335 PSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI 384 (388)
Q Consensus 335 P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~ 384 (388)
|+|.++.|.+.|+|+.++|+.|++|.|+|+|.|.+++ ++|+|.++...
T Consensus 485 P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~--v~Ysi~~~~~~ 532 (880)
T 1q55_A 485 PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQK--LSYFIGNDPAR 532 (880)
T ss_dssp CEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCC--EEEEECCCSSC
T ss_pred CEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCc--EEEEECCCCCC
Confidence 9999999999999999999999999999999999987 99999976443
No 2
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=100.00 E-value=2.3e-55 Score=438.41 Aligned_cols=315 Identities=28% Similarity=0.433 Sum_probs=278.2
Q ss_pred CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC------CeEEEEEec-------CCcEEEeCCeeEEEE-c
Q psy4200 1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG------SKVKYGIYG-------TDRFSLDRDSGELRV-A 66 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~------~~i~y~i~~-------~~~F~Id~~tG~i~~-~ 66 (388)
|.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+|. +.++|+|.+ .+.|.|++.+|.|++ .
T Consensus 98 V~DvNDn~P~F~~~~y~-~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~ 176 (550)
T 3q2v_A 98 VTDQNDNRPEFTQEVFE-GSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176 (550)
T ss_dssp EECCSCCCCCBSCSEEE-EEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECS
T ss_pred EEecCCCCCccCCCceE-EEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEcc
Confidence 57999999999999999 99999999999999999999983 589999974 248999999999998 5
Q ss_pred ccCCCcccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEE
Q psy4200 67 QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNV 146 (388)
Q Consensus 67 ~~lD~e~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v 146 (388)
++||||....|. |+|.|.|.+ ..++++.+.+
T Consensus 177 ~~LDrE~~~~y~--l~V~A~D~g-----------------------------------------------~~~~s~t~~v 207 (550)
T 3q2v_A 177 SGLDRESYPTYT--LVVQAADLQ-----------------------------------------------GEGLSTTAKA 207 (550)
T ss_dssp SCCCTTTCSEEE--EEEEEESGG-----------------------------------------------GTSCCCEEEE
T ss_pred CCCCcccCcEEE--EEEEEEcCC-----------------------------------------------CCCeeEEEEE
Confidence 899999999999 888888821 1135778899
Q ss_pred EEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCc--eEEEEEecCCCCceEEe----CCeeEEEecc
Q psy4200 147 DIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPR--SIYYDLLTNPDEFFLID----SNTGELKTAK 220 (388)
Q Consensus 147 ~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~--~v~y~l~~~~~~~F~id----~~tG~i~~~~ 220 (388)
+|.|.|+|||+|+|.+..|..+|.|+ ++|+.|+++.|+|+|.+.++ .++|+|.++..++|.|+ ..+|.|++.+
T Consensus 208 ~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~~~~~~F~i~~d~~~~tG~i~~~~ 286 (550)
T 3q2v_A 208 VITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAK 286 (550)
T ss_dssp EEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESSCSSCCEEEEECTTTCCEEEEESS
T ss_pred EEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEeCCCCcEEEEecCCCccEEEEecc
Confidence 99999999999999999999999999 99999999999999999876 46799998778899998 7899999999
Q ss_pred cCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEE
Q psy4200 221 PLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIV 300 (388)
Q Consensus 221 ~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a 300 (388)
+||||. ...|.|.|+|+| .| +...+.++++++|.|+|.|+|| +|.|....|.+.|+|++++|+.|+ ++.|
T Consensus 287 ~LD~E~----~~~y~l~V~a~D--~~-~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~--~v~A 356 (550)
T 3q2v_A 287 GLDFEA----KQQYILHVRVEN--EE-PFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEIT--SYTA 356 (550)
T ss_dssp CCCTTT----CSEEEEEEEEEE--SS-CCCSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEE--ECCE
T ss_pred cCCccc----cceEEEEEEEEe--CC-CCCCCccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEE--EEeC
Confidence 999999 568999999997 33 2122357899999999999999 999999999999999999999997 8999
Q ss_pred eeCC-------------------------------------------------eEEEEecCCCceeEEEEEEEEEEEeCC
Q psy4200 301 TDSD-------------------------------------------------LVIAEETHTAEKLSSSATLIVQVTDVN 331 (388)
Q Consensus 301 ~D~D-------------------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvN 331 (388)
+|+| .|.|.| .|.|+++++++|+|+|+|+|
T Consensus 357 ~D~D~g~n~~i~y~i~~~~~~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D-~g~p~~s~~~~v~I~V~DvN 435 (550)
T 3q2v_A 357 REPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATD-DGSPIATGTGTLLLVLLDVN 435 (550)
T ss_dssp ECCCCSTTCCCEEEEEECTTCCEEECTTTCEEEECSCCCTTCTTTCCSSEEEEEEEEEC-CSSSCCCEEEEEEEEEECCC
T ss_pred CCCCCCCCCCEEEEEecCCCCcEEEeCCCcEEEECCccCcccccccCCCEEEEEEEEEe-CCCCcceeEEEEEEEEEeCC
Confidence 9999 244555 67788999999999999999
Q ss_pred CCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCce
Q psy4200 332 DNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYG 383 (388)
Q Consensus 332 D~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~ 383 (388)
||+|+|.+ |...|+|+.+.|.+ |.|+|+|.+.|+. +++|+|.++..
T Consensus 436 Dn~P~~~~--~~~~v~e~~~~~~~---v~A~D~D~~~n~~-~~~~~l~~~~~ 481 (550)
T 3q2v_A 436 DNAPIPEP--RNMQFCQRNPQPHI---ITILDPDLPPNTS-PFTAELTHGAS 481 (550)
T ss_dssp CCCCEESC--SSCEEESSSCCCEE---EEEECCSCTTSSS-SCCCEEEECCS
T ss_pred CCCCcCcC--cccceeecCCCcEE---EEEECCCCCCCCC-CEEEEECCCCC
Confidence 99999974 67889999988864 9999999999985 69999996543
No 3
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=100.00 E-value=7.2e-55 Score=435.66 Aligned_cols=315 Identities=26% Similarity=0.418 Sum_probs=275.4
Q ss_pred CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC-----CCeEEEEEecC-------CcEEEeCCeeEEEEcc-
Q psy4200 1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE-----GSKVKYGIYGT-------DRFSLDRDSGELRVAQ- 67 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D-----~~~i~y~i~~~-------~~F~Id~~tG~i~~~~- 67 (388)
|.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+| |+.++|+|.++ +.|.|++.+|.|++.+
T Consensus 98 V~DvNDn~P~F~~~~y~-~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~ 176 (559)
T 3q2w_A 98 VIDMNDNRPEFLHQVWN-GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAA 176 (559)
T ss_dssp EECCCCCCCEESCSEEE-EEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCS
T ss_pred EEeCCCCCCccCCCeeE-EEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEec
Confidence 57999999999999999 9999999999999999999998 47899999742 5799999999999987
Q ss_pred cCCCcccceeeEEEEEEEEec--CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEE
Q psy4200 68 PLDREYNSTNTSTIVLTLEGV--DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTN 145 (388)
Q Consensus 68 ~lD~e~~~~~~~~l~v~a~D~--~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~ 145 (388)
+||||+...|. |+|.|.|. .|. .++++.+.
T Consensus 177 ~LD~E~~~~y~--l~V~A~D~~g~p~----------------------------------------------~~~s~t~~ 208 (559)
T 3q2w_A 177 GLDREKVQQYT--LIIQATDMEGNPT----------------------------------------------YGLSNTAT 208 (559)
T ss_dssp CCCTTTCCEEE--EEEEEEHHHHCTT----------------------------------------------TCCEEEEE
T ss_pred cCCcccCCEEE--EEEEEEECCCCCC----------------------------------------------CCccceEE
Confidence 99999999999 99999882 121 13577889
Q ss_pred EEEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCC--CceEEEEEec-CCCCceEE----eCCeeEEEe
Q psy4200 146 VDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ--PRSIYYDLLT-NPDEFFLI----DSNTGELKT 218 (388)
Q Consensus 146 v~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~--~~~v~y~l~~-~~~~~F~i----d~~tG~i~~ 218 (388)
++|.|.|+|||+|+|.+..|..+|.|+. +|+.++++.|+|+|.+. ++.++|+|.+ +..+.|.| +..+|.|++
T Consensus 209 v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~ 287 (559)
T 3q2w_A 209 AVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTV 287 (559)
T ss_dssp EEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEEEEE
T ss_pred EEEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEEEEe
Confidence 9999999999999999999999999997 89999999999999986 5689999986 45789999 578999999
Q ss_pred cccCCccccCCcccEEEEEEEEEEccCCC--CcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeee
Q psy4200 219 AKPLDREILGGTNGVISLTVRAREMVDGK--PLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDL 296 (388)
Q Consensus 219 ~~~LD~E~~~~~~~~~~l~v~a~D~~~g~--~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l 296 (388)
.++||||. ...|.|.|.|+|. |. .+..++++++++|.|+|.|+|| +|.|....|.+.|.|+.+.|+.|+
T Consensus 288 ~~~LD~E~----~~~y~l~V~A~D~--~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~-- 358 (559)
T 3q2w_A 288 VKPIDFET----NRMFVLTVAAENQ--VPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLT-- 358 (559)
T ss_dssp CSCCCTTT----CSEEEEEEECCBS--SCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEE--
T ss_pred CCCCCCcc----CceEEEEEEEEcC--CccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEE--
Confidence 99999999 6689999999972 21 1112457899999999999999 699999999999999999999997
Q ss_pred EEEEeeCC------------------------------------------------eEEEEecCCCceeEEEEEEEEEEE
Q psy4200 297 DMIVTDSD------------------------------------------------LVIAEETHTAEKLSSSATLIVQVT 328 (388)
Q Consensus 297 ~l~a~D~D------------------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~ 328 (388)
++.|+|+| .|.|.| .|.|+++++++|+|+|+
T Consensus 359 ~v~A~D~D~g~n~~i~Ysi~~~~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D-~g~p~~ss~~~v~I~V~ 437 (559)
T 3q2w_A 359 TLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASD-NGIPPMSGTGTLQIYLL 437 (559)
T ss_dssp ECCEECSCSSSCCCEEEEEEECTTCCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEE-CSSSCCEEEEEEEEEEE
T ss_pred EEEEECCCCCCCCceEEEEccCCccceEecCCceEEEEccccCcccccccCCEEEEEEEEEc-CCCCcceEEEEEEEEEE
Confidence 89999999 355555 67788999999999999
Q ss_pred eCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEc
Q psy4200 329 DVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLG 380 (388)
Q Consensus 329 dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~ 380 (388)
|+|||+|+|.+..| .++|+ .|..+++|.|+|+|.+.|+. +++|+|..
T Consensus 438 DvNDn~P~f~~~~~--~v~e~--~~~~v~~v~A~D~D~~~n~~-~~~ysl~~ 484 (559)
T 3q2w_A 438 DINDNAPQVLPQEA--ETCET--PEPNSINITALDYDIDPNAG-PFAFDLPL 484 (559)
T ss_dssp CCSCCCCEESCTTC--CCCSC--CCTTCEEECEECSCCTTSSS-SCEEECCS
T ss_pred EccCCCCcccCCce--EEeec--CCCcEEEEEEEcCCCCCCCC-CEEEEEcC
Confidence 99999999986654 57888 45557899999999999872 49999984
No 4
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=100.00 E-value=6.9e-56 Score=441.52 Aligned_cols=315 Identities=25% Similarity=0.342 Sum_probs=276.5
Q ss_pred CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC------CeEEEEEecC-------CcEEEeCCeeEEEEc-
Q psy4200 1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG------SKVKYGIYGT-------DRFSLDRDSGELRVA- 66 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~------~~i~y~i~~~-------~~F~Id~~tG~i~~~- 66 (388)
|.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+|. +.++|+|.++ +.|.|++.||.|++.
T Consensus 104 V~DvNDn~P~F~~~~y~-~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~ 182 (546)
T 1l3w_A 104 VIDQNDNRPKFTQDVFR-GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG 182 (546)
T ss_dssp EECCSCCCCEESSSCEE-EEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECS
T ss_pred EEecccCcCEecCceeE-EEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEec
Confidence 57999999999999999 99999999999999999999983 6899999852 489999999999995
Q ss_pred ccCCCcccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEE
Q psy4200 67 QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNV 146 (388)
Q Consensus 67 ~~lD~e~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v 146 (388)
++||||....|. |+|.|+|.+ ..++++.+.+
T Consensus 183 ~~LD~E~~~~y~--l~V~A~D~g-----------------------------------------------~~~~s~~~~v 213 (546)
T 1l3w_A 183 TGLDREKFPEYT--LTVQATDLE-----------------------------------------------GAGLSVEGKA 213 (546)
T ss_dssp CCCCTTTCCEEE--EEEEEEHHH-----------------------------------------------HTSCEEECCE
T ss_pred cCCCcccCceEE--EEEEEEECC-----------------------------------------------CCCcceEEEE
Confidence 789999999999 888888821 0135677899
Q ss_pred EEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCC--CCCCceEEEEEecCCCCceEEe--C--CeeEEEecc
Q psy4200 147 DIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD--LAQPRSIYYDLLTNPDEFFLID--S--NTGELKTAK 220 (388)
Q Consensus 147 ~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D--~~~~~~v~y~l~~~~~~~F~id--~--~tG~i~~~~ 220 (388)
+|.|.|+|||+|+|.+..|..+|.|+ ++|+.|+++.|+|+| .+.|+.++|+|.++..++|.|+ + .+|.|++.+
T Consensus 214 ~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~~~~~~F~I~~d~~~~~G~i~~~~ 292 (546)
T 1l3w_A 214 IIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAK 292 (546)
T ss_dssp EEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESS
T ss_pred EEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEeCCCceEEEEecCCCCeEEEEECc
Confidence 99999999999999999999999999 999999999999999 6788999999987567899995 3 689999999
Q ss_pred cCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEE
Q psy4200 221 PLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIV 300 (388)
Q Consensus 221 ~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a 300 (388)
+||||. ...|.|.|+|+| .|.. ..+.++++++|.|+|.|+|| +|.|....|.+.|+|+.++|+.|+ ++.|
T Consensus 293 ~LD~E~----~~~y~l~V~a~D--~~~~-~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~--~v~A 362 (546)
T 1l3w_A 293 GLDFEL----RKQYVLQITVEN--AEPF-SVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKII--SLVA 362 (546)
T ss_dssp CCCCSS----CCCEEEEECCEE--SSCC-SSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEE--ECCE
T ss_pred cCCccc----ccEEEEEEEEEE--CCCC-CCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEE--EEEE
Confidence 999999 557999999997 3321 12346889999999999999 999999999999999999999997 9999
Q ss_pred eeCC------------------------------------------------eEEEEecCCCceeEEEEEEEEEEEeCCC
Q psy4200 301 TDSD------------------------------------------------LVIAEETHTAEKLSSSATLIVQVTDVND 332 (388)
Q Consensus 301 ~D~D------------------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND 332 (388)
+|+| .|.|.| .|.|+++++++|+|+|+|+||
T Consensus 363 ~D~D~g~n~~i~ysi~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D-~g~p~~s~~~~v~I~V~DvND 441 (546)
T 1l3w_A 363 QDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTD-DGVSVGTGTGTLILHVLDVND 441 (546)
T ss_dssp ECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEE-CSSSCCCCCEEEECCBCCCCC
T ss_pred ECCCCCCCceEEEEECCCCCCcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEEEE-CCCCCcEeEEEEEEEEEECCC
Confidence 9999 244555 567789999999999999999
Q ss_pred CCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCce
Q psy4200 333 NVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYG 383 (388)
Q Consensus 333 ~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~ 383 (388)
|+|+|.+ +..+|+|+.++|+ + |.|+|+|.+.|+. +++|+|.++..
T Consensus 442 n~P~f~~--~~~~v~e~~~~g~-v--v~A~D~D~~~n~~-~~~y~l~~~~~ 486 (546)
T 1l3w_A 442 NGPVPSP--RVFTMCDQNPEPQ-V--LTISDADIPPNTY-PYKVSLSHGSD 486 (546)
T ss_dssp SCCCBSC--CCEEECSSSCCCE-E--EEBCCSSCTTTTC-CCCCBCCSCSS
T ss_pred CcCCccC--ceEEEecCCCCCe-E--EEEEeCCCCCCCc-cEEEEECCCCC
Confidence 9999984 3688999999998 3 9999999999874 48999986543
No 5
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=100.00 E-value=3.6e-54 Score=448.58 Aligned_cols=316 Identities=25% Similarity=0.352 Sum_probs=277.6
Q ss_pred CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC------CeEEEEEecC-------CcEEEeCCeeEEEEc-
Q psy4200 1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG------SKVKYGIYGT-------DRFSLDRDSGELRVA- 66 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~------~~i~y~i~~~-------~~F~Id~~tG~i~~~- 66 (388)
|.|+|||+|+|.+..|. ++|+|++++|+.|++++|+|+|. +.++|+|.++ +.|.|++.||.|++.
T Consensus 253 V~DvNDn~P~F~~~~y~-~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~ 331 (880)
T 1q55_A 253 VIDQNDNRPKFTQDVFR-GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG 331 (880)
T ss_dssp EECCSCCCCEESSSCEE-EEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECS
T ss_pred EEecCCCCCCccCCcEE-EEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEec
Confidence 57999999999999999 99999999999999999999983 6899999853 489999999999996
Q ss_pred ccCCCcccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEE
Q psy4200 67 QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNV 146 (388)
Q Consensus 67 ~~lD~e~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v 146 (388)
++||||....|. |+|.|+|.+ ..++++.+.+
T Consensus 332 ~~LDrE~~~~y~--l~V~A~D~g-----------------------------------------------~~~~s~~~~v 362 (880)
T 1q55_A 332 TGLDREKFPEYT--LTVQATDLE-----------------------------------------------GAGLSVEGKA 362 (880)
T ss_dssp CCCCTTTCCEEE--EEEEEEHHH-----------------------------------------------HTSCEEECCE
T ss_pred ccCCHHHcceeE--EEEEEEECC-----------------------------------------------CCCccceeEE
Confidence 789999999999 888888821 0135777899
Q ss_pred EEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCC--CCCCceEEEEEecCCCCceEEe--C--CeeEEEecc
Q psy4200 147 DIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD--LAQPRSIYYDLLTNPDEFFLID--S--NTGELKTAK 220 (388)
Q Consensus 147 ~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D--~~~~~~v~y~l~~~~~~~F~id--~--~tG~i~~~~ 220 (388)
+|+|.|+|||+|+|.+..|..+|.|+ ++|+.|+++.|+|+| .+.|+.++|+|.++..++|.|+ + .+|.|++.+
T Consensus 363 ~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~~~~~~F~I~~d~~~~~G~i~~~~ 441 (880)
T 1q55_A 363 IIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAK 441 (880)
T ss_dssp EEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESS
T ss_pred EEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCceEEEEEecCCCceEEEEecCCCceEEEeccc
Confidence 99999999999999999999999999 999999999999999 6778999999987667899995 3 679999999
Q ss_pred cCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEE
Q psy4200 221 PLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIV 300 (388)
Q Consensus 221 ~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a 300 (388)
+||||. ...|.|.|+|+| .|. ...+.++++++|.|+|.|+|| +|.|....|.+.|+|+.++|+.|+ ++.|
T Consensus 442 ~LD~E~----~~~y~l~V~A~D--~~~-~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~--~v~A 511 (880)
T 1q55_A 442 GLDFEL----RKQYVLQITVEN--AEP-FSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKII--SLVA 511 (880)
T ss_dssp CCCCSS----CCCEEEEECCEE--SSC-CSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEE--ECCE
T ss_pred CCCccc----CCcEEEEEEEEE--CCC-CCCCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEE--EEEE
Confidence 999999 557999999997 332 112347889999999999999 999999999999999999999997 9999
Q ss_pred eeCC------------------------------------------------eEEEEecCCCceeEEEEEEEEEEEeCCC
Q psy4200 301 TDSD------------------------------------------------LVIAEETHTAEKLSSSATLIVQVTDVND 332 (388)
Q Consensus 301 ~D~D------------------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND 332 (388)
+|+| .|.|.| .|.|+++++++|+|+|+|+||
T Consensus 512 ~D~D~g~n~~v~Ysi~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D-~g~p~~sst~tv~I~V~DvND 590 (880)
T 1q55_A 512 QDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTD-DGVSVGTGTGTLILHVLDVND 590 (880)
T ss_dssp ECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEE-CSSSCCCCCEEEECCBCCCCC
T ss_pred EeCCCCCCCcEEEEECCCCCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEE-CCCCCcEeEEEEEEEEEeCCC
Confidence 9999 345555 567889999999999999999
Q ss_pred CCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200 333 NVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI 384 (388)
Q Consensus 333 ~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~ 384 (388)
|+|+|.+. ...|+|+.++|+ + |.|+|+|.+.|+. +++|+|.++...
T Consensus 591 n~P~f~~~--~~~v~E~~~~g~-v--v~A~D~D~~~n~~-~~~ysl~~~~~~ 636 (880)
T 1q55_A 591 NGPVPSPR--VFTMCDQNPEPQ-V--LTISDADIPPNTY-PYKVSLSHGSDL 636 (880)
T ss_dssp SCCCBSCC--CEEECSSSCCCE-E--EEBCCSSCTTTTC-CCCCBCCSCSSS
T ss_pred CCCCccCc--ceEEecCCCCCe-E--EEEecCCCCCCCc-eEEEEECCCCCC
Confidence 99999854 688999999998 3 9999999999974 589999865443
No 6
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=100.00 E-value=2.4e-52 Score=416.70 Aligned_cols=300 Identities=28% Similarity=0.393 Sum_probs=263.9
Q ss_pred eEEecCCC--CCcEEEEEEEECCC-CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200 19 LVVEENTP--PGTIVSTLEGVDPE-GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV 88 (388)
Q Consensus 19 ~~v~E~~~--~gt~v~~v~a~D~D-~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~ 88 (388)
++|+||.+ .++.|+++.| |.| ++.|+|+|.+. ++|.|++.+|.|+++++||||+...|. |+|.|.|.
T Consensus 7 ~~v~En~~~~~~~~v~~v~a-d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~--l~v~a~d~ 83 (550)
T 3q2v_A 7 ISCPENEKGEFPKNLVQIKS-NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI--LYSHAVSS 83 (550)
T ss_dssp EEEETTCCSSSSEEEEECEE-GGGGTSCEEEEEESBTTTBSSCSSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred EEEeCCCCCCcCeEEEEEec-CCCCCceEEEEEECCCCCCCCCceEEEeCCceEEEECCccCcccCCeeE--EEEEEEeC
Confidence 89999984 6789999999 666 78999999862 389999999999999999999999999 88888882
Q ss_pred CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200 89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE 168 (388)
Q Consensus 89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~ 168 (388)
. ...+...+.++|.|.|+|||+|.|.+..|.++
T Consensus 84 ~-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~ 116 (550)
T 3q2v_A 84 N-----------------------------------------------GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116 (550)
T ss_dssp T-----------------------------------------------SCBCSCCEEEEEEEECCSCCCCCBSCSEEEEE
T ss_pred C-----------------------------------------------CCcccceEEEEEEEEecCCCCCccCCCceEEE
Confidence 1 00134567899999999999999999999999
Q ss_pred EecCCCCCcEEEEEEEeeCCCC---CCceEEEEEecC-----CCCceEEeCCeeEEEe-cccCCccccCCcccEEEEEEE
Q psy4200 169 IMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLTN-----PDEFFLIDSNTGELKT-AKPLDREILGGTNGVISLTVR 239 (388)
Q Consensus 169 v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~~-----~~~~F~id~~tG~i~~-~~~LD~E~~~~~~~~~~l~v~ 239 (388)
|.|++++|+.++++.|+|+|.+ .|+.++|+|.++ ..++|.|++.+|.|++ .++||||. ...|.|.|+
T Consensus 117 V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~----~~~y~l~V~ 192 (550)
T 3q2v_A 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES----YPTYTLVVQ 192 (550)
T ss_dssp EETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTT----CSEEEEEEE
T ss_pred EeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCccc----CcEEEEEEE
Confidence 9999999999999999999998 689999999852 3569999999999998 57999999 568999999
Q ss_pred EEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC---------------
Q psy4200 240 AREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD--------------- 304 (388)
Q Consensus 240 a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D--------------- 304 (388)
|+| .|.+ .++++++|.|+|.|+|||+|.|....|.+.|+|+ +.|+.|+ ++.|+|+|
T Consensus 193 A~D--~g~~----~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~--~v~a~D~D~~~n~~~~~~ysi~~ 263 (550)
T 3q2v_A 193 AAD--LQGE----GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIA--TLKVTDDDAPNTPAWKAVYTVVN 263 (550)
T ss_dssp EES--GGGT----SCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCE--EECEECCSCTTSTTTCEEEEESS
T ss_pred EEc--CCCC----CeeEEEEEEEEecccCCCCCEEecceeEEEEecC-CCCCEEE--EEEEEECCCCCCCcEEEEEEEEe
Confidence 997 3333 5789999999999999999999999999999999 9999997 89999998
Q ss_pred -----------------------------------eEEEEecCC--CceeEEEEEEEEEEEeCCCCCCeeeccceEEEEe
Q psy4200 305 -----------------------------------LVIAEETHT--AEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVL 347 (388)
Q Consensus 305 -----------------------------------~v~~~~~~~--~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~~v~ 347 (388)
.|.|.+.++ .+.++++++|+|+|+|+|| +|.|.+..|.+.|+
T Consensus 264 ~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~ 342 (550)
T 3q2v_A 264 DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVP 342 (550)
T ss_dssp CSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEE
T ss_pred CCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCC-CCeEcCcceEEEEe
Confidence 244444321 3457899999999999999 99999999999999
Q ss_pred cCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200 348 ETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI 384 (388)
Q Consensus 348 e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~ 384 (388)
|++++|+.|+++.|+|+|.|.+++ ++|+|.++...
T Consensus 343 E~~~~gt~v~~v~A~D~D~g~n~~--i~y~i~~~~~~ 377 (550)
T 3q2v_A 343 EDFGVGQEITSYTAREPDTFMDQK--ITYRIWRDTAN 377 (550)
T ss_dssp TTCCSSCEEEECCEECCCCSTTCC--CEEEEEECTTC
T ss_pred cCCCCCCEEEEEeCCCCCCCCCCC--EEEEEecCCCC
Confidence 999999999999999999999987 99999866443
No 7
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=100.00 E-value=2.1e-51 Score=410.54 Aligned_cols=303 Identities=29% Similarity=0.431 Sum_probs=260.2
Q ss_pred eEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200 19 LVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV 88 (388)
Q Consensus 19 ~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~ 88 (388)
++|+||.+ |+....+.+.+.| |+.|+|+|.+. ++|.|++.||.|++.++||||+...|. |+|.|.|.
T Consensus 7 ~~v~En~~-g~~~~~i~~~~~D~~~n~~i~Ysi~~~~~~~~~~~~F~id~~tG~l~~~~~LDrE~~~~y~--l~v~a~D~ 83 (559)
T 3q2w_A 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH--LRAHAVDI 83 (559)
T ss_dssp EEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred EEeeCCCC-CCCCeEEEEEeeCCCCCcEEEEEEECCCCCCCCCceEEEeCCceEEEECCccCCCCCceEE--EEEEEEEC
Confidence 89999997 7666666666554 68999999863 479999999999999999999999999 88888882
Q ss_pred CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200 89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE 168 (388)
Q Consensus 89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~ 168 (388)
+ ...+++.+.++|.|.|+|||+|+|.+..|.++
T Consensus 84 g-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~ 116 (559)
T 3q2w_A 84 N-----------------------------------------------GNQVENPIDIVINVIDMNDNRPEFLHQVWNGS 116 (559)
T ss_dssp T-----------------------------------------------SCEEEEEEEEEEEEECCCCCCCEESCSEEEEE
T ss_pred C-----------------------------------------------CCccceeEEEEEEEEeCCCCCCccCCCeeEEE
Confidence 1 00145677899999999999999999999999
Q ss_pred EecCCCCCcEEEEEEEeeCCCC--CCceEEEEEecC-C----CCceEEeCCeeEEEecc-cCCccccCCcccEEEEEEEE
Q psy4200 169 IMESAPIGSVVLRVEAKDGDLA--QPRSIYYDLLTN-P----DEFFLIDSNTGELKTAK-PLDREILGGTNGVISLTVRA 240 (388)
Q Consensus 169 v~E~~~~g~~v~~v~A~D~D~~--~~~~v~y~l~~~-~----~~~F~id~~tG~i~~~~-~LD~E~~~~~~~~~~l~v~a 240 (388)
|.|++++|+.++++.|+|+|.+ .|+.++|+|.++ + .++|.|++.+|.|.+.+ +||||. ...|.|.|+|
T Consensus 117 V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~l~V~A 192 (559)
T 3q2w_A 117 VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK----VQQYTLIIQA 192 (559)
T ss_dssp EETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTT----CCEEEEEEEE
T ss_pred EeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCccc----CCEEEEEEEE
Confidence 9999999999999999999987 588999999752 2 26899999999999987 999999 5689999999
Q ss_pred EEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC----------------
Q psy4200 241 REMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD---------------- 304 (388)
Q Consensus 241 ~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D---------------- 304 (388)
+|. .|.+ .+.++++++|.|+|.|+|||+|.|....|.+.|+|+. +|+.++ ++.|+|+|
T Consensus 193 ~D~-~g~p--~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~--~v~a~D~D~~~~~n~~~~y~i~~g 266 (559)
T 3q2w_A 193 TDM-EGNP--TYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVA--NLTVTDKDQPHTPAWNAAYRISGG 266 (559)
T ss_dssp EHH-HHCT--TTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEE--EEEEECCSCTTSTTTSBCCEEEES
T ss_pred EEC-CCCC--CCCccceEEEEEEEEeCCCCCCccccccceeEecCCC-CCcEEE--EEEEEcCCCCCCCceeEEEEEecC
Confidence 974 1211 1247899999999999999999999999999999997 899997 89999998
Q ss_pred -----------------------------------eEEEEecC----C-CceeEEEEEEEEEEEeCCCCCCeeeccceEE
Q psy4200 305 -----------------------------------LVIAEETH----T-AEKLSSSATLIVQVTDVNDNVPSFELNAYTG 344 (388)
Q Consensus 305 -----------------------------------~v~~~~~~----~-~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~ 344 (388)
.|.|.+.. | .++++++++|+|+|+|+|| +|.|.+..|.+
T Consensus 267 ~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~ 345 (559)
T 3q2w_A 267 DPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKII 345 (559)
T ss_dssp CTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEE
T ss_pred CCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEE
Confidence 23344321 1 2568899999999999999 69999999999
Q ss_pred EEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200 345 NVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI 384 (388)
Q Consensus 345 ~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~ 384 (388)
.|+|+.++|+.|++|.|+|+|.+.|++ ++|+|.++...
T Consensus 346 ~v~En~~~g~~v~~v~A~D~D~g~n~~--i~Ysi~~~~~~ 383 (559)
T 3q2w_A 346 RQEEGLHAGTMLTTLTAQDPDRYMQQN--IRYTKLSDPAN 383 (559)
T ss_dssp EEESCCCTTCEEEECCEECSCSSSCCC--EEEEEEECTTC
T ss_pred EEeCCCCCCCEEEEEEEECCCCCCCCc--eEEEEccCCcc
Confidence 999999999999999999999999987 99999965443
No 8
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=100.00 E-value=5.1e-52 Score=413.65 Aligned_cols=303 Identities=26% Similarity=0.356 Sum_probs=261.6
Q ss_pred CCcceEEecCCC--CCcEEEEEEEECCC-CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEE
Q psy4200 15 VNSPLVVEENTP--PGTIVSTLEGVDPE-GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLT 84 (388)
Q Consensus 15 ~~~~~~v~E~~~--~gt~v~~v~a~D~D-~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~ 84 (388)
.|. ++|+||++ .+..|+++.+ |.| ++.|+|+|.++ ++|.|++.+|.|+++++||||+...|. |+|.
T Consensus 10 ~~~-~~v~En~~g~~~~~v~~~~~-d~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~--l~v~ 85 (546)
T 1l3w_A 10 IPP-IKVSENERGPFPKRLVQIKS-NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYV--LSSH 85 (546)
T ss_dssp CCC-EEEESSCCSSSCEEEEECCC-SGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEE
T ss_pred cce-eEecCCCCCCCCcEEEEEEc-CCCCCceEEEEEECCCCCCCCCceEEEeCCccEEEECCcCCcccCceEE--EEEE
Confidence 466 89999997 2345777775 555 79999999863 379999999999999999999999999 9988
Q ss_pred EEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCc
Q psy4200 85 LEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSS 164 (388)
Q Consensus 85 a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~ 164 (388)
|.|.+ ...+++.+.++|.|.|+|||+|.|.+..
T Consensus 86 A~D~~-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~ 118 (546)
T 1l3w_A 86 AVSEN-----------------------------------------------GSPVEEPMEITINVIDQNDNRPKFTQDV 118 (546)
T ss_dssp EEESS-----------------------------------------------SCBCSCCEEEEEEEECCSCCCCEESSSC
T ss_pred EEeCC-----------------------------------------------CCcccceEEEEEEEEecccCcCEecCce
Confidence 88821 0013456789999999999999999999
Q ss_pred ceEEEecCCCCCcEEEEEEEeeCCCC---CCceEEEEEecC-----CCCceEEeCCeeEEEec-ccCCccccCCcccEEE
Q psy4200 165 FSGEIMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVIS 235 (388)
Q Consensus 165 ~~~~v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~ 235 (388)
|.++|.|++++|+.|+++.|+|+|.+ .|+.++|+|.++ ..++|.|++.+|.|++. ++||||. ...|.
T Consensus 119 y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~ 194 (546)
T 1l3w_A 119 FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK----FPEYT 194 (546)
T ss_dssp EEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTT----CCEEE
T ss_pred eEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCccc----CceEE
Confidence 99999999999999999999999998 689999999863 24799999999999995 7999999 56899
Q ss_pred EEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC-----------
Q psy4200 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD----------- 304 (388)
Q Consensus 236 l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D----------- 304 (388)
|.|+|+| .|.+ .+++++.+.|+|.|+|||+|.|....|.+.|+|+ ++|+.|+ ++.|+|+|
T Consensus 195 l~V~A~D--~g~~----~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~--~v~A~D~D~~~g~n~~v~y 265 (546)
T 1l3w_A 195 LTVQATD--LEGA----GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQ--RLSVTDLDMPGTPAWQAVY 265 (546)
T ss_dssp EEEEEEH--HHHT----SCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEE--EECBCCCSCTTSTTSCEEC
T ss_pred EEEEEEE--CCCC----CcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEE--EEEEEeCCCCCCCCcEEEE
Confidence 9999997 3433 5789999999999999999999999999999999 9999997 89999988
Q ss_pred ---------------------------------------eEEEEecCC--CceeEEEEEEEEEEEeCCCCCCeeeccceE
Q psy4200 305 ---------------------------------------LVIAEETHT--AEKLSSSATLIVQVTDVNDNVPSFELNAYT 343 (388)
Q Consensus 305 ---------------------------------------~v~~~~~~~--~~~~s~~~~v~I~V~dvND~~P~f~~~~y~ 343 (388)
.|.|.|.++ .+.++++++|+|+|+|+|| +|.|.++.|.
T Consensus 266 ~i~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~ 344 (546)
T 1l3w_A 266 KIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSR 344 (546)
T ss_dssp CBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEEC
T ss_pred EEEeCCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCC-CCcEecceEE
Confidence 122333221 2457899999999999999 9999999999
Q ss_pred EEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200 344 GNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI 384 (388)
Q Consensus 344 ~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~ 384 (388)
+.|+|+.++|+.|++|.|+|+|.|.+++ ++|+|.++...
T Consensus 345 ~~V~En~~~g~~v~~v~A~D~D~g~n~~--i~ysi~~~~~~ 383 (546)
T 1l3w_A 345 VDVSEDLSRGEKIISLVAQDPDKQQIQK--LSYFIGNDPAR 383 (546)
T ss_dssp CCBCTTCCSSEEEEECCEECCCTTCCCC--EEEEECCCSSC
T ss_pred EEEeCCCCCCCEEEEEEEECCCCCCCce--EEEEECCCCCC
Confidence 9999999999999999999999999987 99999976443
No 9
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=9.9e-50 Score=385.25 Aligned_cols=292 Identities=26% Similarity=0.362 Sum_probs=250.3
Q ss_pred CcEEEEEEEECCC---CCeEEEEEecC---CcEEEeC--------CeeEEEEcccCCCccc---ceeeEEEEEEEEecC-
Q psy4200 28 GTIVSTLEGVDPE---GSKVKYGIYGT---DRFSLDR--------DSGELRVAQPLDREYN---STNTSTIVLTLEGVD- 89 (388)
Q Consensus 28 gt~v~~v~a~D~D---~~~i~y~i~~~---~~F~Id~--------~tG~i~~~~~lD~e~~---~~~~~~l~v~a~D~~- 89 (388)
..++.+|+|+|+| |+.++|+|.+. ..|+|++ .+|.|+++++||||+. ..|. +.|.|+|.+
T Consensus 8 ~~Pv~~v~AtD~D~g~n~~v~Ysi~~~~~~~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~~~~~~~~~--~~V~a~d~g~ 85 (419)
T 3ubh_A 8 VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTID--FWVIITNMGH 85 (419)
T ss_dssp EEEEEEEEEEGGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECTTSEEEESSCCCGGGSCTTCEEE--EEEEEEC--C
T ss_pred ccceEEEEEEcccCCCCceEEEEEecCCCCceEEEcCCCccEEECCCcEEEECCccCccccCccceEE--EEEEEEeCCC
Confidence 3578999999998 79999999863 4688886 7999999999999998 5778 888887721
Q ss_pred CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCc--ceE
Q psy4200 90 PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSS--FSG 167 (388)
Q Consensus 90 P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~--~~~ 167 (388)
|. ..++++.+.|+|.|.|+|||+|.|.+.. |..
T Consensus 86 ~~---------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~ 120 (419)
T 3ubh_A 86 NA---------------------------------------------GIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120 (419)
T ss_dssp CS---------------------------------------------SSCCEEEEEEEEEEECCCCSCCEECCSSSSCEE
T ss_pred CC---------------------------------------------CCCCcceEEEEEEEEECCCCCCcccCCCCcEEE
Confidence 00 0035667899999999999999999877 789
Q ss_pred EEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCC
Q psy4200 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDG 246 (388)
Q Consensus 168 ~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g 246 (388)
.|.|++++|+.|+++.|+|+|.|.| ++|+|.. +..++|.|++.+|.|++.+.||+|. ...|.|.|+|+|. |
T Consensus 121 ~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~~~~~~~F~I~~~tG~i~~~~~ld~e~----~~~y~l~V~A~D~--g 192 (419)
T 3ubh_A 121 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL----DMEYVLYVKAEDQ--N 192 (419)
T ss_dssp EECTTCCTTCEEEECCEECSSTTCC--EEEEEEEESSSSCEEECTTTCEEEECSSSCCCB----TCEEEEEEEEEEE--E
T ss_pred EEeCCCCCCCEEEEEEEECCCCCce--eEEEEEeCCCCCeEEEeCCceEEEEeccccccc----ccEEEEEEEEEEC--C
Confidence 9999999999999999999999875 8999985 4568999999999999999999998 5579999999983 3
Q ss_pred CCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC----------------------
Q psy4200 247 KPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD---------------------- 304 (388)
Q Consensus 247 ~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D---------------------- 304 (388)
.+...+.+++++.+.|.|.| |||+|.|.+..|.+.|+||.++|+.|+ ++.|+|+|
T Consensus 193 ~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~dn~~i~Ysi~~~~~~~~~F~I~~ 269 (419)
T 3ubh_A 193 GKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDII--SIKAKSFADREIRYTLKAQGQGAGTFNIGP 269 (419)
T ss_dssp EEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEE--ECCEECSSCCCCEEEEEESSSCCSSEEECT
T ss_pred CCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEE--EEEEecCCCCceEEEEecCCCCCCcEEEEC
Confidence 32122346788899999999 999999999999999999999999997 89999987
Q ss_pred ------------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCCCeeeccceEE-EEecCCCCCcEEEEE
Q psy4200 305 ------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTG-NVLETAQAGTSITTI 359 (388)
Q Consensus 305 ------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~-~v~e~~~~g~~v~~v 359 (388)
.|.|.++ .++++++++|+|+|+|+|||+|+|.++.|.. .|+|+.++|+.|++|
T Consensus 270 ~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd--~~~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v 347 (419)
T 3ubh_A 270 TSGIVKLAKELDFEDLRQPHVYSLIVTATED--SGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRV 347 (419)
T ss_dssp TTCEEEECSCCCTTCTTSCSEEEEEEEEECT--TTSCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEEEC
T ss_pred CCCEEEECcccCccccccccEEEEEEEEEeC--CCCcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEEEE
Confidence 2334432 3568899999999999999999999999987 799999999999999
Q ss_pred EEEcCCCCCCCceeEEEEEEcC
Q psy4200 360 TALDSDGGDYGTGGIVYELLGE 381 (388)
Q Consensus 360 ~a~D~D~~~~~~~~i~ysi~~~ 381 (388)
.|+|+|.|.|+. ++|+|.++
T Consensus 348 ~A~D~D~g~n~~--v~Y~i~~~ 367 (419)
T 3ubh_A 348 KAMDSDSGSNAE--IEYLVSDD 367 (419)
T ss_dssp CEECSSCGGGGC--EEEEESCT
T ss_pred EEEeCCCCCCCE--EEEEEcCC
Confidence 999999999987 99999864
No 10
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=4.7e-45 Score=352.55 Aligned_cols=243 Identities=29% Similarity=0.391 Sum_probs=212.9
Q ss_pred CCccCCCCCeeccCC--CcceEEecCCCCCcEEEEEEEECCC-CCeEEEEEec---CCcEEEeCCeeEEEEcccCCCccc
Q psy4200 1 MEAYGNSPPSFTTDV--NSPLVVEENTPPGTIVSTLEGVDPE-GSKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYN 74 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~--~~~~~v~E~~~~gt~v~~v~a~D~D-~~~i~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~ 74 (388)
|.|+|||+|+|.+.. |. +.|+|++++|+.|+++.|+|+| +..++|+|.. .+.|.|++.+|.|++.+.||+|..
T Consensus 101 V~DvNDn~P~F~~~~~~~~-~~v~E~~~~gt~v~~v~A~D~D~g~n~~y~i~~~~~~~~F~I~~~tG~i~~~~~ld~e~~ 179 (419)
T 3ubh_A 101 VKDVNDEPPYFINRPLPMQ-AVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 179 (419)
T ss_dssp EECCCCSCCEECCSSSSCE-EEECTTCCTTCEEEECCEECSSTTCCEEEEEEEESSSSCEEECTTTCEEEECSSSCCCBT
T ss_pred EEECCCCCCcccCCCCcEE-EEEeCCCCCCCEEEEEEEECCCCCceeEEEEEeCCCCCeEEEeCCceEEEEecccccccc
Confidence 579999999999887 67 8999999999999999999999 5569999984 358999999999999999999999
Q ss_pred ceeeEEEEEEEEecC-CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeec
Q psy4200 75 STNTSTIVLTLEGVD-PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDV 153 (388)
Q Consensus 75 ~~~~~~l~v~a~D~~-P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dv 153 (388)
..|. |+|.|.|.+ |. ....+++.+.++|.|.|
T Consensus 180 ~~y~--l~V~A~D~g~~~--------------------------------------------~~~~~~~t~~v~I~V~d- 212 (419)
T 3ubh_A 180 MEYV--LYVKAEDQNGKV--------------------------------------------DDRRFQSTPEERLSIVG- 212 (419)
T ss_dssp CEEE--EEEEEEEEEEEC----------------------------------------------CCEEECCCEEEEEEE-
T ss_pred cEEE--EEEEEEECCCCc--------------------------------------------cCcccccceEEEEEEEC-
Confidence 9999 999999821 10 00123556678999999
Q ss_pred CCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec--CCCCceEEeCCeeEEEecccCCccccCCcc
Q psy4200 154 QNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT--NPDEFFLIDSNTGELKTAKPLDREILGGTN 231 (388)
Q Consensus 154 Nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~--~~~~~F~id~~tG~i~~~~~LD~E~~~~~~ 231 (388)
|||+|.|.+..|.++|.|+.++|+.|+++.|+|+| ++.++|+|.. +..++|.|++.+|.|++.++||||.... .
T Consensus 213 ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~-~ 288 (419)
T 3ubh_A 213 GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQ-P 288 (419)
T ss_dssp SCCCCEESSSCEEEEEETTCCTTCEEEECCEECSS---CCCCEEEEEESSSCCSSEEECTTTCEEEECSCCCTTCTTS-C
T ss_pred CCCCCceecCeeEEEecCCCCCCcEEEEEEEecCC---CCceEEEEecCCCCCCcEEEECCCCEEEECcccCcccccc-c
Confidence 99999999999999999999999999999999987 5689999973 5578999999999999999999998531 2
Q ss_pred cEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEE-EEeCCCCCCCeeeeeEEEEeeCC
Q psy4200 232 GVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVV-HIPEDIPDGSLLPDLDMIVTDSD 304 (388)
Q Consensus 232 ~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~-~v~E~~~~g~~v~~l~l~a~D~D 304 (388)
..|.|.|+|+| ++. .+++++.|.|+|.|+|||+|.|....|.. .|.|+.++|+.|+ ++.|+|+|
T Consensus 289 ~~y~l~V~a~d--d~~-----~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~--~v~A~D~D 353 (419)
T 3ubh_A 289 HVYSLIVTATE--DSG-----GFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL--RVKAMDSD 353 (419)
T ss_dssp SEEEEEEEEEC--TTT-----SCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEE--ECCEECSS
T ss_pred cEEEEEEEEEe--CCC-----CcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEE--EEEEEeCC
Confidence 37999999996 433 36889999999999999999999999987 7999999999997 89999999
No 11
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=100.00 E-value=1.2e-42 Score=323.30 Aligned_cols=226 Identities=27% Similarity=0.459 Sum_probs=200.8
Q ss_pred eEEecC--CCCCcEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecCCC
Q psy4200 19 LVVEEN--TPPGTIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPE 91 (388)
Q Consensus 19 ~~v~E~--~~~gt~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~P~ 91 (388)
++|+|+ .+.|+.|+++. +|+| ++.++|+|.++ ..|.|++.+|.|++.++||||+...|. |+|.|.|...
T Consensus 7 ~~v~E~~~~~~~~~v~~va-~D~D~g~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~~~- 82 (322)
T 2a62_A 7 MFVLEEFSGPEPILVGRLH-TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYT--LTAQAVDFET- 82 (322)
T ss_dssp EECCCSCCCSSCEECCCCC-CCCCCSSCCCEEEEEETTBTTTEEEETTTTEEEECSCCCTTTCSBCC--EEEEEECTTT-
T ss_pred eeeccccCCCCCEEEEEEE-EcCCCCCCEEEEEEECCCCCCcEEEeCCcCEEEEeccCCcccccEEE--EEEEEEECCC-
Confidence 889999 89999999985 8888 47999999864 489999999999999999999999999 8888887210
Q ss_pred CccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEEec
Q psy4200 92 GSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIME 171 (388)
Q Consensus 92 f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E 171 (388)
...++..+.++|.|.|+|||+|.|.+..|..+|+|
T Consensus 83 ---------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E 117 (322)
T 2a62_A 83 ---------------------------------------------NKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPE 117 (322)
T ss_dssp ---------------------------------------------CSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECS
T ss_pred ---------------------------------------------CCcccceEEEEEEEEecCCCCCccCCCceEEEEeC
Confidence 00145667899999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeeCCC---CCCceEEEEEecCCCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEEEEccCCC
Q psy4200 172 SAPIGSVVLRVEAKDGDL---AQPRSIYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMVDGK 247 (388)
Q Consensus 172 ~~~~g~~v~~v~A~D~D~---~~~~~v~y~l~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a~D~~~g~ 247 (388)
+.++|+.|+++.|+|+|. |.|+.++|+|.++ ..+|.|++.+|.|++. ++||||. ...|.|.|+|+| .|.
T Consensus 118 ~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~-~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~l~V~a~D--~g~ 190 (322)
T 2a62_A 118 MSILGTSVTNVTATDADDPVYGNSAKLVYSILEG-QPYFSIEPETAIIKTALPNMDREA----KEEYLVVIQAKD--MGG 190 (322)
T ss_dssp SCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEEC-TTTEEECTTTCCEEECSSCCCGGG----CSEEEEEEEEEE--SCS
T ss_pred CCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccC-CCCEEEecCCCEEEecccCCCccc----CCeEEEEEEEEE--CCC
Confidence 999999999999999996 7788999999864 4789999999999998 8999999 568999999998 454
Q ss_pred CcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200 248 PLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304 (388)
Q Consensus 248 ~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D 304 (388)
|. +.++++++|.|+|.|+|||+|.|.+..|.+.|+|+.+.|+.|+ ++.|+|+|
T Consensus 191 p~--~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~D 243 (322)
T 2a62_A 191 HS--GGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIG--RVKANDQD 243 (322)
T ss_dssp SS--SCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEE--EEECCCSS
T ss_pred CC--CCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCcEEE--EEEEEeCC
Confidence 31 1368899999999999999999999999999999999999997 99999999
No 12
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=100.00 E-value=6.1e-42 Score=300.00 Aligned_cols=205 Identities=32% Similarity=0.527 Sum_probs=185.9
Q ss_pred CCCCCeeccCCCcc-eEEecCCCCCcEEEEEEEECCCCCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEE
Q psy4200 5 GNSPPSFTTDVNSP-LVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTST 80 (388)
Q Consensus 5 nd~~P~F~~~~~~~-~~v~E~~~~gt~v~~v~a~D~D~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~ 80 (388)
.|++|.|.+..|.. ++|+|++++|+.|+++.|+|+|++.++|+|.++ ++|.|++.+|.|+++++||||....|.
T Consensus 2 vn~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~-- 79 (210)
T 3mvs_A 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFT-- 79 (210)
T ss_dssp CCCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCCCCEEEEESHHHHHHEEECTTTCEEEESSCCCTTTCCEEE--
T ss_pred CCCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCCcEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcccceEE--
Confidence 58999999998872 589999999999999999999999999999863 479999999999999999999999999
Q ss_pred EEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCee
Q psy4200 81 IVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIF 160 (388)
Q Consensus 81 l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f 160 (388)
|+|.|.| ++....+.++|.|.|+|||+|.|
T Consensus 80 l~v~a~D--------------------------------------------------~~~~~~~~v~I~V~DvNDn~P~f 109 (210)
T 3mvs_A 80 VEFSVSD--------------------------------------------------HQGVITRKVNIQVGDVNDNAPTF 109 (210)
T ss_dssp EEEEEEC--------------------------------------------------SSCEEEEEEEEEEECCCCCCCEE
T ss_pred EEEEEEe--------------------------------------------------CCCCEEEEEEEEEEeCCCCCCcC
Confidence 7777766 44456679999999999999999
Q ss_pred eCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEE
Q psy4200 161 INSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA 240 (388)
Q Consensus 161 ~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a 240 (388)
.+..|.+.|.|+.++|+.|+++.|+|+|.|.|+.++|+|.. ..++|.|++.+|.|++.++||||. ...|.|.|+|
T Consensus 110 ~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~-~~~~F~Id~~tG~i~~~~~LD~E~----~~~y~l~V~a 184 (210)
T 3mvs_A 110 HNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP-PSPFFAIDSARGIVTVIQELDYEV----TQAYQLTVNA 184 (210)
T ss_dssp CSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEESS-CCSSEEECTTTCEEEECSCCCTTT----CSEEEEEEEE
T ss_pred CCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEeC-CCCCEEEeCCcEEEEECCcCCCcc----cceEEEEEEE
Confidence 99999999999999999999999999999999999999985 457999999999999999999999 5689999999
Q ss_pred EEccCCCCcCCCCceEEEEEEEEEcccCCCC
Q psy4200 241 REMVDGKPLQEDQATAFAQVTVTILDVNDSP 271 (388)
Q Consensus 241 ~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~ 271 (388)
+| .|.+ +++++++.+.|+|.|+||+|
T Consensus 185 ~D--~g~~---~~~s~~~~v~I~V~DvND~~ 210 (210)
T 3mvs_A 185 TD--QDKT---RPLSTLANLAIIITDMQDMD 210 (210)
T ss_dssp EE--CCSS---SCCEEEEEEEEEEECCCCCC
T ss_pred EE--CCCC---CCCEEEEEEEEEEEccCCCC
Confidence 98 4432 36899999999999999986
No 13
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=100.00 E-value=1.8e-41 Score=315.62 Aligned_cols=253 Identities=24% Similarity=0.321 Sum_probs=200.2
Q ss_pred CcceEEecCCCCCcEEEEEEEECCCCCeEEEEEec-CCcEEEeCCeeEEEEcccCCCcccc-----eeeEEEEEEEEecC
Q psy4200 16 NSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYG-TDRFSLDRDSGELRVAQPLDREYNS-----TNTSTIVLTLEGVD 89 (388)
Q Consensus 16 ~~~~~v~E~~~~gt~v~~v~a~D~D~~~i~y~i~~-~~~F~Id~~tG~i~~~~~lD~e~~~-----~~~~~l~v~a~D~~ 89 (388)
+. ++.+|+.+.|+.++++.+.|+ .++|+|.+ ..+|.|++ +|.|+++++||||... .|. |+|.+.|..
T Consensus 9 ~~-atd~D~g~ng~v~y~l~~~~~---~~~f~i~~~~~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~--l~v~a~d~~ 81 (316)
T 3ubf_A 9 IE-FTEADGDTEGKSVFQLEKETD---KETFKIRDDNPWVTVET-NGAVRVKKKWDYEELGPEKTIDFW--VIITNMGHN 81 (316)
T ss_dssp EE-EESGGGCSTTCEEEECCCSST---TCEEEESSCCSSEEECT-TSEEEESSCCCGGGSCTTCEEEEE--EEEEC----
T ss_pred EE-EEecCCCCCceEEEEEEcCCC---cceEEEeCCCCeEEECC-CeEEEECCccChhhcccccceEEE--EEEEEcCCC
Confidence 44 677777888888877766443 56888875 45899999 9999999999999853 344 444444411
Q ss_pred CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCc--ceE
Q psy4200 90 PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSS--FSG 167 (388)
Q Consensus 90 P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~--~~~ 167 (388)
. ...+++.+.++|.|.|+|||+|.|.+.. |.+
T Consensus 82 ~----------------------------------------------~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~ 115 (316)
T 3ubf_A 82 A----------------------------------------------GIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 115 (316)
T ss_dssp -------------------------------------------------CCCEEEEEEEEEECTTCCCCEECCSSSSEEE
T ss_pred C----------------------------------------------CCcccceEEEEEEEEECCCCCCccCCCCCCEEE
Confidence 0 0024678899999999999999999876 899
Q ss_pred EEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCC
Q psy4200 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDG 246 (388)
Q Consensus 168 ~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g 246 (388)
.|.|++++|+.|+++.|+|+|.+.| ++|+|.. +..++|.|++.+|.|++.++||||. ...|.|.|+|+| .|
T Consensus 116 ~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~----~~~y~l~V~A~D--~g 187 (316)
T 3ubf_A 116 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL----DMEYVLYVKAED--QN 187 (316)
T ss_dssp EECTTCCTTCEEEECCEECSSTTCC--EEEEEEEEESSSCEEECTTTCEEEECSSCCCCT----TCEEEEEEEEEE--SC
T ss_pred EEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEeCCCCCEEEEECCccEEEECCcCCccc----CcEEEEEEEEEe--CC
Confidence 9999999999999999999999976 9999985 4678999999999999999999998 568999999998 44
Q ss_pred CCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC----------------------
Q psy4200 247 KPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD---------------------- 304 (388)
Q Consensus 247 ~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D---------------------- 304 (388)
++...+.+++++.+.|.|.| |||+|.|.+..|.+.|+|+.++|+.|+ ++.|+|+|
T Consensus 188 ~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~Dn~~i~Y~i~~~~~~~~~F~Id~ 264 (316)
T 3ubf_A 188 GKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDII--SIKAKSFADREIRYTLKAQGQGAGTFNIGP 264 (316)
T ss_dssp C-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEE--ECCEECTTCCCEEEEEEEESSCTTTEEECT
T ss_pred CCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEE--EEEEEeCCCCEEEEEEEcCCCCCCeEEEEC
Confidence 32122356788899999999 999999999999999999999999996 89999988
Q ss_pred ------------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCC
Q psy4200 305 ------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNV 334 (388)
Q Consensus 305 ------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~ 334 (388)
.|.|.++. ++++++++|+|+|+|+||||
T Consensus 265 ~tG~i~~~~~LD~E~~~~~~~y~l~V~A~dd~--g~~~~~~~v~I~V~DvNDn~ 316 (316)
T 3ubf_A 265 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDS--GGFSTSVDLTIRVTDVNDNA 316 (316)
T ss_dssp TTCEEEECSCCCSSCTTSCSEEEEEEEEEESS--SSCEEEEEEEEEEECC----
T ss_pred CeEEEEECCcCCccccCCCceEEEEEEEEECC--CCCEEEEEEEEEEEecCCCC
Confidence 24455433 35889999999999999985
No 14
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-42 Score=306.18 Aligned_cols=208 Identities=19% Similarity=0.176 Sum_probs=180.1
Q ss_pred eeccCCCcceEEecCCCCCcEEEEEEEECCCC-CeEEEEEe------------cCCcEEEeCCeeEEEEcccCCCcccce
Q psy4200 10 SFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG-SKVKYGIY------------GTDRFSLDRDSGELRVAQPLDREYNST 76 (388)
Q Consensus 10 ~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~-~~i~y~i~------------~~~~F~Id~~tG~i~~~~~lD~e~~~~ 76 (388)
.|.+..|. ++|+|++++|+.|++|.|+|+|. ..+.|+|. ..++|.|++.||.|+++++||||....
T Consensus 2 ~F~~~~Y~-~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~ 80 (246)
T 2x2u_A 2 YFSRDAYW-EKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEK 80 (246)
T ss_dssp EESCSEEE-EEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHHHHH
T ss_pred CccCCceE-EEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhHhhh
Confidence 58999999 99999999999999999999994 34555554 247899999999999999999999999
Q ss_pred e------------eEEEEEEEEecC-CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeE
Q psy4200 77 N------------TSTIVLTLEGVD-PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSK 143 (388)
Q Consensus 77 ~------------~~~l~v~a~D~~-P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~ 143 (388)
| . |+|.|.|.+ | .+.+++.
T Consensus 81 y~~~~~G~p~~~~~--l~V~a~D~g~~----------------------------------------------~~~~~~~ 112 (246)
T 2x2u_A 81 LSVRNRGFPLLTVY--LKVFLSPTSLR----------------------------------------------EGECQWP 112 (246)
T ss_dssp HHHTSTTSCCCEEE--EEEECC-----------------------------------------------------CCCTT
T ss_pred hccccCCCcccceE--EEEEEEcCCCC----------------------------------------------CCcccce
Confidence 8 6 777776621 1 0124556
Q ss_pred EEEEEEEeecCCCCCe----------eeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCe
Q psy4200 144 TNVDIRVGDVQNTPPI----------FINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNT 213 (388)
Q Consensus 144 ~~v~V~V~dvNd~~P~----------f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~t 213 (388)
+.|.|.|.|+|||+|+ |.+..|.++|.|+.++|+.|+++.|+|+|.|.|+.++|+|.++...+|.|++.+
T Consensus 113 ~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~t 192 (246)
T 2x2u_A 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDS 192 (246)
T ss_dssp TEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCTTSSEECCTTC
T ss_pred EEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCCCCCEEEECCc
Confidence 7899999999999999 999999999999999999999999999999999999999997657899999999
Q ss_pred eEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccC
Q psy4200 214 GELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFN 275 (388)
Q Consensus 214 G~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~ 275 (388)
|.|++.++||||. ...|.|.|.|+|. +|.| +++++++|.|+|.|+|||+|.|.
T Consensus 193 G~i~~~~~LDrE~----~~~y~l~V~A~d~-dg~p----~~ss~~~v~I~V~DvNDn~P~F~ 245 (246)
T 2x2u_A 193 LEVSTRWALDREQ----REKYELVAVCTVH-AGAR----EEVVMVPFPVTVYDEDDSAPEFE 245 (246)
T ss_dssp CEEEESSCBCTTT----CSEEEEEEEEEEC----C----CEEEEEEEEEEEECSSCCSCCCC
T ss_pred CEEEeCCccCccc----cceEEEEEEEEec-CCCC----cceEEEEEEEEEEEeCCCCCccC
Confidence 9999999999999 5689999999985 4444 68999999999999999999995
No 15
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=100.00 E-value=8.3e-39 Score=297.66 Aligned_cols=213 Identities=28% Similarity=0.353 Sum_probs=179.8
Q ss_pred CCccCCCCCeeccCC--CcceEEecCCCCCcEEEEEEEECCC-CCeEEEEEec---CCcEEEeCCeeEEEEcccCCCccc
Q psy4200 1 MEAYGNSPPSFTTDV--NSPLVVEENTPPGTIVSTLEGVDPE-GSKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYN 74 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~--~~~~~v~E~~~~gt~v~~v~a~D~D-~~~i~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~ 74 (388)
|.|+|||+|+|.+.. |. +.|+|++++|+.|+++.|+|+| +..++|+|.+ .++|.|++.+|.|+++++||||..
T Consensus 96 V~DvNDn~P~F~~~~~~y~-~~v~En~~~gt~v~~v~A~D~D~g~ni~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~ 174 (316)
T 3ubf_A 96 VKDVNDEPPYFINRPLPMQ-AVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 174 (316)
T ss_dssp EECTTCCCCEECCSSSSEE-EEECTTCCTTCEEEECCEECSSTTCCEEEEEEEEESSSCEEECTTTCEEEECSSCCCCTT
T ss_pred EEECCCCCCccCCCCCCEE-EEEeCCCCCCCEEEEEEEECCCCCCceEEEEEeCCCCCEEEEECCccEEEECCcCCcccC
Confidence 579999999999987 78 9999999999999999999999 4559999984 469999999999999999999999
Q ss_pred ceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecC
Q psy4200 75 STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQ 154 (388)
Q Consensus 75 ~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvN 154 (388)
..|. |+|.|.|.+... ....+++.+.++|.|.| |
T Consensus 175 ~~y~--l~V~A~D~g~~~-------------------------------------------~~~~~~~~~~v~I~V~d-n 208 (316)
T 3ubf_A 175 MEYV--LYVKAEDQNGKV-------------------------------------------DDRRFQSTPEERLSIVG-G 208 (316)
T ss_dssp CEEE--EEEEEEESCC--------------------------------------------------CBCCCEEEEEEE-S
T ss_pred cEEE--EEEEEEeCCCCC-------------------------------------------CCccccceEEEEEEEEc-C
Confidence 9999 999999832000 00123456688999999 9
Q ss_pred CCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEe--cCCCCceEEeCCeeEEEecccCCccccCCccc
Q psy4200 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL--TNPDEFFLIDSNTGELKTAKPLDREILGGTNG 232 (388)
Q Consensus 155 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~--~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~ 232 (388)
||+|+|.+..|.++|.|+.++|+.|+++.|+|+| ++.++|+|. ++..++|.|++.+|.|++.++||||.... ..
T Consensus 209 Dn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~-~~ 284 (316)
T 3ubf_A 209 KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQ-PH 284 (316)
T ss_dssp CCCCEESSSSEEEEEETTCCTTCEEEECCEECTT---CCCEEEEEEEESSCTTTEEECTTTCEEEECSCCCSSCTTS-CS
T ss_pred CCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCC---CCEEEEEEEcCCCCCCeEEEECCeEEEEECCcCCccccCC-Cc
Confidence 9999999999999999999999999999999998 568999996 35678999999999999999999998420 15
Q ss_pred EEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCC
Q psy4200 233 VISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSP 271 (388)
Q Consensus 233 ~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~ 271 (388)
.|.|.|+|+| +++ .++++++|.|+|.|+||||
T Consensus 285 ~y~l~V~A~d--d~g-----~~~~~~~v~I~V~DvNDn~ 316 (316)
T 3ubf_A 285 VYSLIVTATE--DSG-----GFSTSVDLTIRVTDVNDNA 316 (316)
T ss_dssp EEEEEEEEEE--SSS-----SCEEEEEEEEEEECC----
T ss_pred eEEEEEEEEE--CCC-----CCEEEEEEEEEEEecCCCC
Confidence 8999999996 443 3689999999999999986
No 16
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=100.00 E-value=6.2e-38 Score=274.78 Aligned_cols=199 Identities=24% Similarity=0.435 Sum_probs=167.3
Q ss_pred CcceEEecCC--CCCcEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200 16 NSPLVVEENT--PPGTIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV 88 (388)
Q Consensus 16 ~~~~~v~E~~--~~gt~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~ 88 (388)
|. +.|.|+. |.|+.|+++ |+|+| ++.++|+|.++ ..|.|++.+|.|+++++||||....|. |+|.|.|.
T Consensus 6 ~~-~~v~En~~~p~~~~v~~v-a~D~D~gn~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~ 81 (215)
T 2a4e_A 6 NQ-FFVIEEYTGPDPVLVGRL-HSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYT--LMAQAVDR 81 (215)
T ss_dssp CE-EEEETTCCSSSCEEEEEC-CCTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred ee-EEEeccCCCCCCEEEEEE-EECCCCCCCeEEEEEECCCCCCeEEEECCceEEEECCccCCccCCEEE--EEEEEEEC
Confidence 45 8999994 689999988 89998 47999999864 489999999999999999999999999 99888882
Q ss_pred CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200 89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE 168 (388)
Q Consensus 89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~ 168 (388)
.- ...+++.+.++|.|.|+|||+|.|.+..|..+
T Consensus 82 ~~----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~ 115 (215)
T 2a4e_A 82 DT----------------------------------------------NRPLEPPSEFIVKVQDINDNPPEFLHEIYHAN 115 (215)
T ss_dssp TT----------------------------------------------CCEEEEEEEEEEEEECCCCCCCEESSSSEEEE
T ss_pred CC----------------------------------------------CCcccccEEEEEEEeeCCCCCCCccCCceEEE
Confidence 10 00145677899999999999999999999999
Q ss_pred EecCCCCCcEEEEEEEeeCCC---CCCceEEEEEecCCCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEEEEcc
Q psy4200 169 IMESAPIGSVVLRVEAKDGDL---AQPRSIYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMV 244 (388)
Q Consensus 169 v~E~~~~g~~v~~v~A~D~D~---~~~~~v~y~l~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a~D~~ 244 (388)
|.|+.++|+.|+++.|+|+|. |.|+.++|+|.++ ..+|.|++.+|.|+++ ++||||. ...|.|.|+|+|
T Consensus 116 v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~-~~~F~Id~~tG~I~~~~~~LD~E~----~~~y~l~V~A~D-- 188 (215)
T 2a4e_A 116 VPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRTALPNMDREA----KEEYHVVIQAKD-- 188 (215)
T ss_dssp EETTCCTTCEEEECCEECSSCTTTCSSSCCEEEEEES-TTTEEECTTTCEEEECSSCCCSSS----CSEEEEEEEEET--
T ss_pred EECCCCCCCEEEEEEEEECCCCCCCCceEEEEEEeCC-CCcEEEeCCccEEEEcccCCCccc----CCEEEEEEEEEE--
Confidence 999999999999999999997 7889999999864 4699999999999998 9999998 568999999997
Q ss_pred CCCCcCCCCceEEEEEEEEEcccCCCCCc
Q psy4200 245 DGKPLQEDQATAFAQVTVTILDVNDSPPV 273 (388)
Q Consensus 245 ~g~~~~~~~~~~~~~v~I~V~dvNd~~P~ 273 (388)
.|.+ .+.++++++|.|+|.|+|||+|.
T Consensus 189 ~g~~--~~~~s~~~~v~I~V~DvNDn~P~ 215 (215)
T 2a4e_A 189 MGGH--MGGLSGTTKVTITLTDDYKDDDK 215 (215)
T ss_dssp TTTC--TTCCEEEEEEEEEEEC-------
T ss_pred CCCC--CCCceeEEEEEEEEEECCCCCCC
Confidence 4432 12478999999999999999995
No 17
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=100.00 E-value=2e-38 Score=294.83 Aligned_cols=210 Identities=23% Similarity=0.383 Sum_probs=183.2
Q ss_pred CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC------CCeEEEEEec-CCcEEEeCCeeEEEEc-ccCCCc
Q psy4200 1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE------GSKVKYGIYG-TDRFSLDRDSGELRVA-QPLDRE 72 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D------~~~i~y~i~~-~~~F~Id~~tG~i~~~-~~lD~e 72 (388)
|.|+|||+|.|.+..|. ++|+|++++|+.|+++.|+|+| |+.++|+|.+ ...|.|++.+|.|+++ ++||||
T Consensus 96 V~DvNDn~P~F~~~~y~-~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~~~F~Id~~tG~i~~~~~~LD~E 174 (322)
T 2a62_A 96 VQDINDNAPEFLNGPYH-ATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDRE 174 (322)
T ss_dssp CCCCSCSCBCCSSSEEE-EEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEECTTTEEECTTTCCEEECSSCCCGG
T ss_pred EEecCCCCCccCCCceE-EEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccCCCCEEEecCCCEEEecccCCCcc
Confidence 68999999999999999 9999999999999999999988 3689999985 4689999999999998 899999
Q ss_pred ccceeeEEEEEEEEecC-CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEe
Q psy4200 73 YNSTNTSTIVLTLEGVD-PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVG 151 (388)
Q Consensus 73 ~~~~~~~~l~v~a~D~~-P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~ 151 (388)
....|. |+|.|.|.+ |. +++++.+.++|.|.
T Consensus 175 ~~~~y~--l~V~a~D~g~p~----------------------------------------------~~~s~~~~v~I~V~ 206 (322)
T 2a62_A 175 AKEEYL--VVIQAKDMGGHS----------------------------------------------GGLSGTTTLTVTLT 206 (322)
T ss_dssp GCSEEE--EEEEEEESCSSS----------------------------------------------SCCBCCEEEEEEEC
T ss_pred cCCeEE--EEEEEEECCCCC----------------------------------------------CCceeEEEEEEEEE
Confidence 999999 999999831 10 13567889999999
Q ss_pred ecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-CCCCceEEe----CCeeEEEecccCCccc
Q psy4200 152 DVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLID----SNTGELKTAKPLDREI 226 (388)
Q Consensus 152 dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id----~~tG~i~~~~~LD~E~ 226 (388)
|+|||+|.|.+..|.++|.|+.++|+.|+++.|+|+|.+.|+.++|+|.. +..++|.|+ +.+|.|+++++||||.
T Consensus 207 DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F~I~~d~~~~tG~i~~~~~LD~E~ 286 (322)
T 2a62_A 207 DVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFET 286 (322)
T ss_dssp CCCCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSBCCBCCTTTSEEEEEBCSCCCCSS
T ss_pred ecCCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcEEEeccCCCceEEEEECCcCCccc
Confidence 99999999999999999999999999999999999999999999999975 456899998 4689999999999999
Q ss_pred cCCcccEEEEEEEEEEccCCCCcC---CCCceEEEEEEEEEc
Q psy4200 227 LGGTNGVISLTVRAREMVDGKPLQ---EDQATAFAQVTVTIL 265 (388)
Q Consensus 227 ~~~~~~~~~l~v~a~D~~~g~~~~---~~~~~~~~~v~I~V~ 265 (388)
...|.|.|+|+| .|.|.. ...++++++|.|.|.
T Consensus 287 ----~~~y~l~V~A~D--~g~pp~~~~~~~~s~~~~V~I~V~ 322 (322)
T 2a62_A 287 ----KKSYTLKVEAAN--IHIDPRFSSRGPFKDTATVKIVVE 322 (322)
T ss_dssp ----CCEEEEEEEEEC--CCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred ----CCeEEEEEEEEE--CCCCCccccCCCcccEEEEEEEEC
Confidence 568999999998 454421 123567888888874
No 18
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=100.00 E-value=4.3e-35 Score=257.18 Aligned_cols=188 Identities=26% Similarity=0.383 Sum_probs=166.2
Q ss_pred eEEecCCC--CCcEEEEEEEECCC-CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200 19 LVVEENTP--PGTIVSTLEGVDPE-GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV 88 (388)
Q Consensus 19 ~~v~E~~~--~gt~v~~v~a~D~D-~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~ 88 (388)
++|+||.+ .|+.|+++.| |.| ++.++|+|.+. ++|.|++.||.|++.++||||....|. |+|.|.|.
T Consensus 7 ~~V~En~~~~~~~~v~~v~a-D~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~ 83 (213)
T 3qrb_A 7 ISCPENEKGEFPKNLVQIKS-NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI--LYSHAVSS 83 (213)
T ss_dssp EEEETTCCSSSSEEEEECCC-GGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred EEEeCCCCCCCCcEEEEEEE-CCCCCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEE--EEEEEEeC
Confidence 89999998 7888999999 776 79999999862 379999999999999999999999999 99998882
Q ss_pred CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200 89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE 168 (388)
Q Consensus 89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~ 168 (388)
+ ...+++.+.++|.|.|+|||+|.|.+..|.++
T Consensus 84 ~-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~ 116 (213)
T 3qrb_A 84 N-----------------------------------------------GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116 (213)
T ss_dssp T-----------------------------------------------SCBCSCCEEEEEEEECCSCCCCEESCSEEEEE
T ss_pred C-----------------------------------------------CCcccceEEEEEEEEEccCCCCccCCCceEEE
Confidence 1 01145668999999999999999999999999
Q ss_pred EecCCCCCcEEEEEEEeeCCCC---CCceEEEEEecC-----CCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEE
Q psy4200 169 IMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVR 239 (388)
Q Consensus 169 v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~ 239 (388)
|.|+.++|+.|+++.|+|+|.+ .|+.++|+|.++ ..++|.|++.+|.|++. ++||||. ...|.|.|+
T Consensus 117 v~En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~l~V~ 192 (213)
T 3qrb_A 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES----YPTYTLVVQ 192 (213)
T ss_dssp EETTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTT----CCEEEEEEE
T ss_pred EECCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCcc----CceEEEEEE
Confidence 9999999999999999999999 789999999852 34799999999999997 7999999 568999999
Q ss_pred EEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 240 AREMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 240 a~D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
|+| .|.+ .++++++|.|+|.|
T Consensus 193 A~D--~g~~----~~s~t~~v~I~V~D 213 (213)
T 3qrb_A 193 AAD--LQGE----GLSTTAKAVITVKD 213 (213)
T ss_dssp EET--GGGT----SCEEEEEEEEEEEC
T ss_pred EEe--CCCC----CceEEEEEEEEEEC
Confidence 997 4443 68999999999986
No 19
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=100.00 E-value=8e-35 Score=255.34 Aligned_cols=191 Identities=24% Similarity=0.384 Sum_probs=166.0
Q ss_pred eEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200 19 LVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV 88 (388)
Q Consensus 19 ~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~ 88 (388)
++|+||++ |+.++++.|.|.| |+.++|+|.++ +.|.|++.+|.|+++++||||....|. |+|.|.|.
T Consensus 7 ~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~ 83 (215)
T 2qvi_A 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH--LRAHAVDI 83 (215)
T ss_dssp EEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred EEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEE--EEEEEEEC
Confidence 89999999 8888888888776 68999999863 479999999999999999999999999 99999882
Q ss_pred CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200 89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE 168 (388)
Q Consensus 89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~ 168 (388)
+ ...+++.+.++|.|.|+|||+|.|.+..|.++
T Consensus 84 g-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~ 116 (215)
T 2qvi_A 84 N-----------------------------------------------GNQVENPIDIVINVIDMNDNRPEFLHQVWNGS 116 (215)
T ss_dssp T-----------------------------------------------TCCCEEEEEEEEEEECCCCCCCBCSSSEEEEE
T ss_pred C-----------------------------------------------CCceeeeEEEEEEEeECCCCCCcccCceeEEE
Confidence 1 01245678999999999999999999999999
Q ss_pred EecCCCCCcEEEEEEEeeCCC--CCCceEEEEEecC-----CCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEE
Q psy4200 169 IMESAPIGSVVLRVEAKDGDL--AQPRSIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRA 240 (388)
Q Consensus 169 v~E~~~~g~~v~~v~A~D~D~--~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a 240 (388)
|.|+.++|+.|+++.|+|+|. +.|+.++|+|.++ ..+.|.|++.+|.|++. ++||||. ...|.|.|+|
T Consensus 117 v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~l~V~a 192 (215)
T 2qvi_A 117 VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK----VQQYTLIIQA 192 (215)
T ss_dssp ECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTT----CSEEEEEEEC
T ss_pred EeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCccc----CCeEEEEEEE
Confidence 999999999999999999998 6899999999864 35799999999999995 7999999 5689999999
Q ss_pred EEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 241 REMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 241 ~D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
+| .|.+. ..+++++++|.|+|.|
T Consensus 193 ~D--~g~~p-~~~ls~t~~v~I~V~D 215 (215)
T 2qvi_A 193 TD--MEGNP-TYGLSNTATAVITVTD 215 (215)
T ss_dssp CT--TTTCT-TTSCCCEEEEEEEECC
T ss_pred EE--CCCCC-CCCcceEEEEEEEEEC
Confidence 97 34320 0147889999999986
No 20
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=100.00 E-value=1.4e-34 Score=254.81 Aligned_cols=192 Identities=25% Similarity=0.401 Sum_probs=166.0
Q ss_pred eEEecCCCCC--cEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecC
Q psy4200 19 LVVEENTPPG--TIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVD 89 (388)
Q Consensus 19 ~~v~E~~~~g--t~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~ 89 (388)
++|+||.++| +.|+++.|.|+|. .++|+|.+. +.|.|++.+|.|+++++||||+...|. |+|.|.|..
T Consensus 8 ~~V~En~~~g~~~~v~~v~a~D~d~-~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~g 84 (218)
T 3k5r_A 8 ILIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQ--LYVETTDAS 84 (218)
T ss_dssp EEEETTCCSSCCEEEEECBCTTCCT-TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEECSS
T ss_pred EEEecCCCCCCCEEEEEEEecCCCc-eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEE--EEEEEEECC
Confidence 8999999998 8899999999887 899999742 589999999999999999999999999 888888721
Q ss_pred CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEE
Q psy4200 90 PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEI 169 (388)
Q Consensus 90 P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v 169 (388)
...+++.+.++|.|.|+|||+|.|.+..|.+.|
T Consensus 85 -----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v 117 (218)
T 3k5r_A 85 -----------------------------------------------GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHV 117 (218)
T ss_dssp -----------------------------------------------SCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEE
T ss_pred -----------------------------------------------CCceeeeEEEEEEEEeCCCCCCcccCCceEEEE
Confidence 001457789999999999999999999999999
Q ss_pred ecCCCCCcEEEEEEEeeCCC--CCCceEEEEEecCC-----CCceEEeCCeeEEEec---ccCCccccCCcccEEEEEEE
Q psy4200 170 MESAPIGSVVLRVEAKDGDL--AQPRSIYYDLLTNP-----DEFFLIDSNTGELKTA---KPLDREILGGTNGVISLTVR 239 (388)
Q Consensus 170 ~E~~~~g~~v~~v~A~D~D~--~~~~~v~y~l~~~~-----~~~F~id~~tG~i~~~---~~LD~E~~~~~~~~~~l~v~ 239 (388)
.|+.++|+.|+++.|+|+|. +.|+.++|+|.+.. .++|.|++.+|.|++. ++||||... ...|.|.|+
T Consensus 118 ~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~--~~~y~l~V~ 195 (218)
T 3k5r_A 118 MEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE--NPKYELIIE 195 (218)
T ss_dssp ETTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCS--CSEEEEEEE
T ss_pred ECCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccC--CCeEEEEEE
Confidence 99999999999999999999 67899999998632 2689999999999987 699999843 237999999
Q ss_pred EEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 240 AREMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 240 a~D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
|+| .|+ ..+.++++++|.|+|.|
T Consensus 196 a~D--~gg--~~p~~sst~~v~I~V~D 218 (218)
T 3k5r_A 196 AQD--MAG--LDVGLTGTATATIVIDD 218 (218)
T ss_dssp EEE--CSS--TTTTCEEEEEEEEEEEC
T ss_pred EEE--CCC--CCCCeeEEEEEEEEEEC
Confidence 998 441 12368999999999986
No 21
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=100.00 E-value=1.9e-33 Score=244.53 Aligned_cols=187 Identities=24% Similarity=0.418 Sum_probs=163.8
Q ss_pred eEEecCCCCC--cEEEEEEEECCCCCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecC-CCC
Q psy4200 19 LVVEENTPPG--TIVSTLEGVDPEGSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVD-PEG 92 (388)
Q Consensus 19 ~~v~E~~~~g--t~v~~v~a~D~D~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~-P~f 92 (388)
++|+||.+.| +.|+++. .|+|.+.-+|+|.++ ++|.|++.||.|+++++||||....|. |+|.|.|.+ |
T Consensus 7 ~~V~En~~~~~~~~v~~v~-~D~D~g~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~g~~-- 81 (203)
T 3ppe_A 7 MHIREEIDSPLPHHVGKLT-SSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYE--LTAHIIDRRNN-- 81 (203)
T ss_dssp EEEETTCCSSSCEEEEECC-BCCCCTTEEEEEEETTBTTTEEEETTTTEEEESSCCCTTTCCEEE--EEEEEEETTTT--
T ss_pred EEEEccCCCCCCEEEEEEE-ecCCCCCcEEEEecCCCCCeEEEECCcCEEEECccccccccceEE--EEEEEEECCCC--
Confidence 8999999988 8889988 899854449999964 489999999999999999999999999 999998831 1
Q ss_pred ccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEEecC
Q psy4200 93 SKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMES 172 (388)
Q Consensus 93 ~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E~ 172 (388)
..+++.+.++|.|.|+|||+|.|.+..|.++|.|+
T Consensus 82 ---------------------------------------------~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~ 116 (203)
T 3ppe_A 82 ---------------------------------------------RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEM 116 (203)
T ss_dssp ---------------------------------------------EECSCCEEEEEEEECCCCCCCEESCSEEEEEEETT
T ss_pred ---------------------------------------------CcccceEEEEEEEcCCCCCCCCccCCccEEEEecc
Confidence 01456678999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeeCC---CCCCceEEEEEecCCCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEEEEccCCCC
Q psy4200 173 APIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMVDGKP 248 (388)
Q Consensus 173 ~~~g~~v~~v~A~D~D---~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a~D~~~g~~ 248 (388)
.++|+.|+++.|+|+| .|.|+.++|+|.++ ..+|.|+ .+|.|+++ ++||||. ...|.|.|+|+|. .|.|
T Consensus 117 ~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~-~~~F~I~-~tG~i~~~~~~LD~E~----~~~y~l~V~A~D~-~G~p 189 (203)
T 3ppe_A 117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG-NEYFTVD-DSGVIFTARADLDRES----QSAYEIIVKAKDA-LGLT 189 (203)
T ss_dssp CCTTCEEEECCEECCSCTTSSSTTCEEEEEEES-TTTEEEC-TTSEEEESCSCCCTTT----CSEEEEEEEEEET-TCCC
T ss_pred CCCCcEEEEEEEEcCCCcCCCCceEEEEEEeCC-CCcEEEe-CCeEEEECCcCCCccc----CCEEEEEEEEEeC-CCCC
Confidence 9999999999999999 47789999999864 4699999 99999998 9999999 5689999999983 2443
Q ss_pred cCCCCceEEEEEEEEEcc
Q psy4200 249 LQEDQATAFAQVTVTILD 266 (388)
Q Consensus 249 ~~~~~~~~~~~v~I~V~d 266 (388)
.++++++|.|+|.|
T Consensus 190 ----~~s~t~~v~I~V~D 203 (203)
T 3ppe_A 190 ----GESSTATVIIRLTD 203 (203)
T ss_dssp ----CSSSEEEEEEEEEC
T ss_pred ----CCeEEEEEEEEEEC
Confidence 57899999999986
No 22
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=100.00 E-value=4.6e-34 Score=249.40 Aligned_cols=190 Identities=23% Similarity=0.417 Sum_probs=159.0
Q ss_pred eEEecCCCCC--cEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecCCC
Q psy4200 19 LVVEENTPPG--TIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPE 91 (388)
Q Consensus 19 ~~v~E~~~~g--t~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~P~ 91 (388)
++|+||.+.| +.|+++ |+|+| ++.++|+|.++ ++|.|++.+|.|+++++||||....|. |+|.|.|...
T Consensus 7 ~~v~En~~~~~~~~v~~~-a~D~D~g~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~~~- 82 (207)
T 3lnd_A 7 FFLLEEYTGSDYQYVGKL-HSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYI--LRAQAVNRRT- 82 (207)
T ss_dssp EEEESCBCSSSCEEEEEC-CCTTCCSSTTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGGCCEEE--C----CBSSS-
T ss_pred cEEEeecCCCCCEEEEEE-EeCCCCCCceEEEEEECCCCCCeEEEECCceEEEECCCcCcccCCEEE--EEEEEEECCC-
Confidence 8899999855 588888 89999 57899999864 489999999999999999999999999 8888887210
Q ss_pred CccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEEec
Q psy4200 92 GSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIME 171 (388)
Q Consensus 92 f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E 171 (388)
...+++.+.++|.|.|+|||+|.|.+..|.+.|.|
T Consensus 83 ---------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E 117 (207)
T 3lnd_A 83 ---------------------------------------------GRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPE 117 (207)
T ss_dssp ---------------------------------------------CCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEES
T ss_pred ---------------------------------------------CCccccEEEEEEEECccCCCCCccCCCceEEEEeC
Confidence 01245567899999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeeCCC---CCCceEEEEEecCCCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEEEEccCCC
Q psy4200 172 SAPIGSVVLRVEAKDGDL---AQPRSIYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMVDGK 247 (388)
Q Consensus 172 ~~~~g~~v~~v~A~D~D~---~~~~~v~y~l~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a~D~~~g~ 247 (388)
+.++|+.|+++.|+|+|. |.|+.++|+|.++ ..+|.|++.+|.|++. ++||||. ...|.|.|+|+| .|.
T Consensus 118 ~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~-~~~F~Id~~tG~i~~~~~~lD~E~----~~~y~l~V~A~D--~g~ 190 (207)
T 3lnd_A 118 MADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-QPYFSVESETGIIKTALLNMDREN----REQYQVVIQAKD--MGG 190 (207)
T ss_dssp SCCTTCEEEECCEECSSCTTSSSTTCCEEEEEES-GGGEEECTTTCEEEECCSSCCC------CCEEEEEEEEES--GGG
T ss_pred CCCCCCEEEEEEEEeCCCCCCCCCcEEEEEEcCC-CCCEEEcCCCcEEEECcccCCccc----CCEEEEEEEEEE--CCC
Confidence 999999999999999998 7888999999864 4699999999999998 9999999 568999999997 333
Q ss_pred CcCCCCceEEEEEEEEEcc
Q psy4200 248 PLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 248 ~~~~~~~~~~~~v~I~V~d 266 (388)
+ .+.++++++|.|+|.|
T Consensus 191 ~--~~~~s~t~~v~I~V~D 207 (207)
T 3lnd_A 191 Q--MGGLSGTTTVNITLTD 207 (207)
T ss_dssp C--TTCBEEEEEEEEEEEC
T ss_pred C--CCCcEeEEEEEEEEeC
Confidence 2 1257999999999986
No 23
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=99.97 E-value=1.8e-30 Score=227.12 Aligned_cols=162 Identities=30% Similarity=0.478 Sum_probs=144.4
Q ss_pred CCCCeeeCCcce--EEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcc
Q psy4200 155 NTPPIFINSSFS--GEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTN 231 (388)
Q Consensus 155 d~~P~f~~~~~~--~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~ 231 (388)
|++|.|.+..|. ++|+|++++|+.|+++.|+|+|.+ .++|+|.+ +..++|.|++.+|.|++.++||||. .
T Consensus 3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~---~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~----~ 75 (210)
T 3mvs_A 3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---PLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRET----K 75 (210)
T ss_dssp CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCC---CCEEEEESHHHHHHEEECTTTCEEEESSCCCTTT----C
T ss_pred CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCC---cEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcc----c
Confidence 589999999997 699999999999999999999954 68999986 3457899999999999999999999 5
Q ss_pred cEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC-------
Q psy4200 232 GVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD------- 304 (388)
Q Consensus 232 ~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D------- 304 (388)
..|.|.|.|+| +. ...++.+.|+|.|+|||+|.|....|.+.|+|+.++|+.|+ ++.|+|+|
T Consensus 76 ~~y~l~v~a~D---~~------~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~--~v~A~D~D~g~n~~v 144 (210)
T 3mvs_A 76 SEFTVEFSVSD---HQ------GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF--IVNATDPDLGAGGSV 144 (210)
T ss_dssp CEEEEEEEEEC---SS------CEEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEE--ECCEECCSSGGGGCE
T ss_pred ceEEEEEEEEe---CC------CCEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEE--EEEEEeCCCCCCceE
Confidence 68999999996 32 24678999999999999999999999999999999999997 89999999
Q ss_pred ------------------------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCC
Q psy4200 305 ------------------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNV 334 (388)
Q Consensus 305 ------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~ 334 (388)
.|.|.|.++.++++++++|+|+|+|+|||+
T Consensus 145 ~Y~i~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~DvND~~ 210 (210)
T 3mvs_A 145 LYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD 210 (210)
T ss_dssp EEEESSCCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred EEEEeCCCCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEEEccCCCC
Confidence 466777544678999999999999999975
No 24
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.97 E-value=8.3e-30 Score=226.58 Aligned_cols=195 Identities=20% Similarity=0.244 Sum_probs=159.4
Q ss_pred CCcceEEecCCCCCcEEEEEEEECCC----CCeEEEEEecC--CcEEEeCCeeEEEEc---ccCCCcccceeeEEEEEEE
Q psy4200 15 VNSPLVVEENTPPGTIVSTLEGVDPE----GSKVKYGIYGT--DRFSLDRDSGELRVA---QPLDREYNSTNTSTIVLTL 85 (388)
Q Consensus 15 ~~~~~~v~E~~~~gt~v~~v~a~D~D----~~~i~y~i~~~--~~F~Id~~tG~i~~~---~~lD~e~~~~~~~~l~v~a 85 (388)
.+. ++|+|++++|+.|..+.+.|.+ ++.++|+|.+. .+|.|++.+|.+++. +.||||....|. +.+.+
T Consensus 21 ~~~-vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~--~~~~~ 97 (242)
T 4apx_B 21 ATI-VAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIH--SIVVQ 97 (242)
T ss_dssp SEE-EEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTEEEECCTTSCCCCSTTTCCC--EEEEE
T ss_pred eEE-EEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCCCceEEECCCCCEEEEEecCCceeccCCCceE--EEEEE
Confidence 355 8999999999999876655433 57899999864 479999999999985 679999988877 44433
Q ss_pred EecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCC--CceeEEEEEEEEeecCCCCCeeeCC
Q psy4200 86 EGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDG--HHTSKTNVDIRVGDVQNTPPIFINS 163 (388)
Q Consensus 86 ~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~--~~~~~~~v~V~V~dvNd~~P~f~~~ 163 (388)
.+ +.++ +....+.|+|.|.|+|||+|+|.+.
T Consensus 98 v~-----------------------------------------------~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~ 130 (242)
T 4apx_B 98 VQ-----------------------------------------------CVNKKVGTVIYHEVRIVVRDRNDNSPTFKHE 130 (242)
T ss_dssp EE-----------------------------------------------EEETTTCCEEEEEEEEEEECCCCCCCEESSS
T ss_pred EE-----------------------------------------------eECCCCCeEEEEEEEEEEEeCCCCCCcccce
Confidence 32 2232 3455678999999999999999999
Q ss_pred cceEEEecCCCCCcEEEE-----EEEeeCCCCCCceEEEEEecCCC-----CceEEeC-CeeEEEecccCCccccCCccc
Q psy4200 164 SFSGEIMESAPIGSVVLR-----VEAKDGDLAQPRSIYYDLLTNPD-----EFFLIDS-NTGELKTAKPLDREILGGTNG 232 (388)
Q Consensus 164 ~~~~~v~E~~~~g~~v~~-----v~A~D~D~~~~~~v~y~l~~~~~-----~~F~id~-~tG~i~~~~~LD~E~~~~~~~ 232 (388)
.|.++|.|+.++|+.|++ +.|+|+|.|.|+.++|+|..+.. ..|.|++ .+|.|+++++||||. ..
T Consensus 131 ~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~----~~ 206 (242)
T 4apx_B 131 SYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYED----KT 206 (242)
T ss_dssp CEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTT----CC
T ss_pred eeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhh----CC
Confidence 999999999999999976 77999999999999999986422 4699985 599999999999999 56
Q ss_pred EEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 233 VISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 233 ~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
.|.|.|+|+| .|.+.. .++++.+.|+|+|+.
T Consensus 207 ~y~l~V~A~D--~G~~~~-~~~~~~~~vtVnVe~ 237 (242)
T 4apx_B 207 RYYVIIQAND--RAQNLN-ERRTTTTTLTVDLEH 237 (242)
T ss_dssp EEEEEEEEEE--CCSSGG-GCCEEEEEEEEEEEC
T ss_pred EEEEEEEEEE--CCcCch-hcccCCceEEEEEee
Confidence 8999999998 565522 246788899998875
No 25
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.5e-32 Score=241.61 Aligned_cols=170 Identities=18% Similarity=0.181 Sum_probs=142.0
Q ss_pred eeeCCcceEEEecCCCCCcEEEEEEEeeCCCCC--CceEE------EEEecCCCCceEEeCCeeEEEecccCCccccCCc
Q psy4200 159 IFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ--PRSIY------YDLLTNPDEFFLIDSNTGELKTAKPLDREILGGT 230 (388)
Q Consensus 159 ~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~--~~~v~------y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~ 230 (388)
.|.+..|.++|+|++++|+.|+++.|+|+|.+. +..+. |++......+|.|++.+|.|+++++||||.
T Consensus 2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~---- 77 (246)
T 2x2u_A 2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSS---- 77 (246)
T ss_dssp EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHH----
T ss_pred CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhH----
Confidence 588899999999999999999999999999864 44454 555544568999999999999999999999
Q ss_pred ccEE------------EEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCc----------cCCCcEEEEEeCCCC
Q psy4200 231 NGVI------------SLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPV----------FNRKEYVVHIPEDIP 288 (388)
Q Consensus 231 ~~~~------------~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~----------f~~~~~~~~v~E~~~ 288 (388)
...| .|.|.|+| .|.+. ..+++++.|.|+|.|+|||+|. |.+..|.+.|+|+.+
T Consensus 78 ~~~y~~~~~G~p~~~~~l~V~a~D--~g~~~--~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~ 153 (246)
T 2x2u_A 78 WEKLSVRNRGFPLLTVYLKVFLSP--TSLRE--GECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRP 153 (246)
T ss_dssp HHHHHHTSTTSCCCEEEEEEECC-----------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSC
T ss_pred hhhhccccCCCcccceEEEEEEEc--CCCCC--CcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCC
Confidence 4468 99999997 44321 1357788999999999999999 999999999999999
Q ss_pred CCCeeeeeEEEEeeCC--------------------------------------------eEEEEecCCCceeEEEEEEE
Q psy4200 289 DGSLLPDLDMIVTDSD--------------------------------------------LVIAEETHTAEKLSSSATLI 324 (388)
Q Consensus 289 ~g~~v~~l~l~a~D~D--------------------------------------------~v~~~~~~~~~~~s~~~~v~ 324 (388)
+|+.|+ ++.|+|+| .|.|.+.++.|+++++++|+
T Consensus 154 ~Gt~v~--~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~~ss~~~v~ 231 (246)
T 2x2u_A 154 PGTFHQ--FRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFP 231 (246)
T ss_dssp CCEEEE--CSCHHHHHHCTTSCEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CCEEEEEEEE
T ss_pred CCcEEE--EEEEEcCCCCCCcEEEEEEccCCCCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCCcceEEEEEE
Confidence 999997 88999988 46666644558899999999
Q ss_pred EEEEeCCCCCCeee
Q psy4200 325 VQVTDVNDNVPSFE 338 (388)
Q Consensus 325 I~V~dvND~~P~f~ 338 (388)
|+|+|+|||+|+|.
T Consensus 232 I~V~DvNDn~P~F~ 245 (246)
T 2x2u_A 232 VTVYDEDDSAPEFE 245 (246)
T ss_dssp EEEECSSCCSCCCC
T ss_pred EEEEEeCCCCCccC
Confidence 99999999999996
No 26
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=99.96 E-value=1.7e-28 Score=214.75 Aligned_cols=159 Identities=24% Similarity=0.338 Sum_probs=130.3
Q ss_pred cceEEEecCC--CCCcEEEEEEEeeCCCCCCceEEEEEecCC-CCceEEeCCeeEEEecccCCccccCCcccEEEEEEEE
Q psy4200 164 SFSGEIMESA--PIGSVVLRVEAKDGDLAQPRSIYYDLLTNP-DEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA 240 (388)
Q Consensus 164 ~~~~~v~E~~--~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~-~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a 240 (388)
.+.+.|.|+. +.|+.|+++ |+|+|.| ++.++|+|.++. ..+|.|++.+|.|++.++||||. ...|.|.|.|
T Consensus 5 ~~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~a 78 (215)
T 2a4e_A 5 WNQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE----RAQYTLMAQA 78 (215)
T ss_dssp CCEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTT----CSEEEEEEEE
T ss_pred EeeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCCCCCeEEEECCceEEEECCccCCcc----CCEEEEEEEE
Confidence 4678999994 578888888 8999998 789999998643 46999999999999999999999 5689999999
Q ss_pred EEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC----------------
Q psy4200 241 REMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD---------------- 304 (388)
Q Consensus 241 ~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D---------------- 304 (388)
+| .|.+ +++++.+.+.|+|.|+|||+|.|.+..|.+.|+|+.+.|+.|+ ++.|+|+|
T Consensus 79 ~D--~~~~---~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~--~v~A~D~D~~~~G~n~~i~Y~i~~ 151 (215)
T 2a4e_A 79 VD--RDTN---RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVI--QVTASDADDPTYGNSAKLVYSILE 151 (215)
T ss_dssp EE--TTTC---CEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEE--ECCEECSSCTTTCSSSCCEEEEEE
T ss_pred EE--CCCC---CcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEE--EEEEEECCCCCCCCceEEEEEEeC
Confidence 98 3321 2468889999999999999999999999999999999999997 89999987
Q ss_pred -------------------------------eEEEEecCCCc--eeEEEEEEEEEEEeCCCCCCe
Q psy4200 305 -------------------------------LVIAEETHTAE--KLSSSATLIVQVTDVNDNVPS 336 (388)
Q Consensus 305 -------------------------------~v~~~~~~~~~--~~s~~~~v~I~V~dvND~~P~ 336 (388)
.|.|.| .|.+ +++++++|+|+|+|+|||+|+
T Consensus 152 ~~~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D-~g~~~~~~s~~~~v~I~V~DvNDn~P~ 215 (215)
T 2a4e_A 152 GQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD-MGGHMGGLSGTTKVTITLTDDYKDDDK 215 (215)
T ss_dssp STTTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEET-TTTCTTCCEEEEEEEEEEEC-------
T ss_pred CCCcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEE-CCCCCCCceeEEEEEEEEEECCCCCCC
Confidence 344444 3433 689999999999999999995
No 27
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=189.29 Aligned_cols=115 Identities=27% Similarity=0.394 Sum_probs=105.7
Q ss_pred EEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCC---CCceEEeCCeeEEEecccCCc
Q psy4200 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNP---DEFFLIDSNTGELKTAKPLDR 224 (388)
Q Consensus 148 V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~---~~~F~id~~tG~i~~~~~LD~ 224 (388)
++|.|+|||+|+|.+..|.++|.|+.++|+.|+++.|+|+|.|.|+.++|+|.+.. ..+|.|++.+|.|+++++|||
T Consensus 2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~ 81 (119)
T 2yst_A 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR 81 (119)
T ss_dssp CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCT
T ss_pred CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCc
Confidence 46899999999999999999999999999999999999999999999999998643 368999999999999999999
Q ss_pred cccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCC
Q psy4200 225 EILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272 (388)
Q Consensus 225 E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P 272 (388)
|. ...|.|.|+|+| .|.+ .+++++.|.|+|.|+|||+|
T Consensus 82 E~----~~~y~l~V~A~D--~g~p----~~s~~~~v~I~V~DvNDn~P 119 (119)
T 2yst_A 82 EE----VNQLRFTVMARD--RGQP----PKTDKATVVLNIKDENDNVP 119 (119)
T ss_dssp TT----CSEEEEEEEECC--SBTT----BCCEEEEEEEEEECSTTCCC
T ss_pred cc----CCEEEEEEEEEE--CCCC----CcEEEEEEEEEEEeccCCCC
Confidence 99 568999999997 4544 57899999999999999998
No 28
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=99.93 E-value=3.6e-25 Score=193.86 Aligned_cols=126 Identities=23% Similarity=0.380 Sum_probs=114.9
Q ss_pred eEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecC-----CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEE
Q psy4200 166 SGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTN-----PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA 240 (388)
Q Consensus 166 ~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a 240 (388)
.++|+|+++ |+.++++.|.|.|.+.|+.++|+|.+. +.++|.|++.+|.|++.++||||. ...|.|.|.|
T Consensus 6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~a 80 (215)
T 2qvi_A 6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREL----IARFHLRAHA 80 (215)
T ss_dssp CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTT----CSEEEEEEEE
T ss_pred cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCccc----CCeEEEEEEE
Confidence 568999998 888899999999998899999999863 357999999999999999999999 5589999999
Q ss_pred EEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200 241 REMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304 (388)
Q Consensus 241 ~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D 304 (388)
+| .|.+ .+++++.|.|+|.|+|||+|.|....|.+.|+|+.++|+.|+ ++.|+|+|
T Consensus 81 ~D--~g~~----~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~D 136 (215)
T 2qvi_A 81 VD--INGN----QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVM--TVTAIDAD 136 (215)
T ss_dssp EE--TTTC----CCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEE--ECCCBCSS
T ss_pred EE--CCCC----ceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEE--EEEEEeCC
Confidence 98 4543 578899999999999999999999999999999999999997 89999998
No 29
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=99.92 E-value=1.4e-24 Score=188.59 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=110.8
Q ss_pred ceEEEecCCCCC--cEEEEEEEeeCCCCCCceEEEEEecC-CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEE
Q psy4200 165 FSGEIMESAPIG--SVVLRVEAKDGDLAQPRSIYYDLLTN-PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAR 241 (388)
Q Consensus 165 ~~~~v~E~~~~g--~~v~~v~A~D~D~~~~~~v~y~l~~~-~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~ 241 (388)
..++|.||.+.| ..++++. +|+|.+.+ +|+|.++ ..++|.|++.+|.|++.++||||. ...|.|.|.|+
T Consensus 5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~a~ 76 (203)
T 3ppe_A 5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGESANTIFKVQGYDGDIYAFERLDREK----KAEYELTAHII 76 (203)
T ss_dssp SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETTBTTTEEEETTTTEEEESSCCCTTT----CCEEEEEEEEE
T ss_pred ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCCCCCeEEEECCcCEEEECccccccc----cceEEEEEEEE
Confidence 457899999888 8888888 99998875 9999863 456999999999999999999999 56899999999
Q ss_pred EccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200 242 EMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304 (388)
Q Consensus 242 D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D 304 (388)
| .|.+ +.+++++.+.|+|.|+|||+|.|....|.+.|+|+.++|+.|+ ++.|+|+|
T Consensus 77 D--~g~~---~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~--~v~A~D~D 132 (203)
T 3ppe_A 77 D--RRNN---RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVT--KVTAEDAD 132 (203)
T ss_dssp E--TTTT---EECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEE--ECCEECCS
T ss_pred E--CCCC---CcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEE--EEEEEcCC
Confidence 8 4432 2367788999999999999999999999999999999999997 89999998
No 30
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=99.92 E-value=1.6e-24 Score=189.83 Aligned_cols=124 Identities=23% Similarity=0.365 Sum_probs=110.3
Q ss_pred eEEEecCCC--CCcEEEEEEEeeCCCCCCceEEEEEecC-----CCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200 166 SGEIMESAP--IGSVVLRVEAKDGDLAQPRSIYYDLLTN-----PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238 (388)
Q Consensus 166 ~~~v~E~~~--~g~~v~~v~A~D~D~~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v 238 (388)
.++|.|+.+ .|+.|+++.| |+|. ++.++|+|.+. +.++|.|++.+|.|++.++||||. ...|.|.|
T Consensus 6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v 78 (213)
T 3qrb_A 6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREA----IAKYILYS 78 (213)
T ss_dssp EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CSEEEEEE
T ss_pred CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCccc----CceEEEEE
Confidence 678999988 6788999999 7775 67999999862 345999999999999999999999 55899999
Q ss_pred EEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304 (388)
Q Consensus 239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D 304 (388)
.|+| .|.+ .+++++.+.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+ ++.|+|+|
T Consensus 79 ~a~D--~~~~----~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~D 136 (213)
T 3qrb_A 79 HAVS--SNGE----AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVM--KVSATDAD 136 (213)
T ss_dssp EEEE--TTSC----BCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEE--ECCEECCS
T ss_pred EEEe--CCCC----cccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEE--EEEEEeCC
Confidence 9998 4543 467789999999999999999999999999999999999997 99999998
No 31
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=99.92 E-value=7.3e-25 Score=191.04 Aligned_cols=126 Identities=26% Similarity=0.407 Sum_probs=105.8
Q ss_pred eEEEecCCCCC--cEEEEEEEeeCCCCCCceEEEEEecC-CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEE
Q psy4200 166 SGEIMESAPIG--SVVLRVEAKDGDLAQPRSIYYDLLTN-PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRARE 242 (388)
Q Consensus 166 ~~~v~E~~~~g--~~v~~v~A~D~D~~~~~~v~y~l~~~-~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D 242 (388)
.++|.|+.+.+ +.++++ |+|+|.| ++.++|+|.++ ...+|.|++.+|.|++.++||||. ...|.|.|.|+|
T Consensus 6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~a~D 79 (207)
T 3lnd_A 6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE----KPVYILRAQAVN 79 (207)
T ss_dssp CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGG----CCEEEC----CB
T ss_pred ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCCCCCeEEEECCceEEEECCCcCccc----CCEEEEEEEEEE
Confidence 45899998855 478888 9999998 67899999864 346899999999999999999999 568999999997
Q ss_pred ccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200 243 MVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304 (388)
Q Consensus 243 ~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D 304 (388)
.|.. +.+++++.+.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+ ++.|+|+|
T Consensus 80 --~~~~---~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~--~v~A~D~D 134 (207)
T 3lnd_A 80 --RRTG---RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVV--QVTATDAD 134 (207)
T ss_dssp --SSSC---CCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEE--ECCEECSS
T ss_pred --CCCC---CccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEE--EEEEEeCC
Confidence 3321 2467888999999999999999999999999999999999997 99999988
No 32
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=3.2e-25 Score=174.10 Aligned_cols=109 Identities=28% Similarity=0.441 Sum_probs=99.0
Q ss_pred EEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec----CCCCceEEeCCeeEEEecccCC
Q psy4200 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT----NPDEFFLIDSNTGELKTAKPLD 223 (388)
Q Consensus 148 V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~----~~~~~F~id~~tG~i~~~~~LD 223 (388)
|+|.|+|||+|.|.+..|.++|+|+.++|+.|+++.|+|+|.|.|+.++|+|.+ ....+|.|++.+|.|+++++||
T Consensus 2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD 81 (114)
T 2ee0_A 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLD 81 (114)
T ss_dssp CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCC
T ss_pred CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCC
Confidence 568999999999999999999999999999999999999999999999999975 2357999999999999999999
Q ss_pred ccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccC
Q psy4200 224 REILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268 (388)
Q Consensus 224 ~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvN 268 (388)
||. ...|.|.|+|+| .|.+ +++++|.|+|.|+|
T Consensus 82 ~E~----~~~y~l~V~A~D--~g~~------~~~~~v~I~V~DvN 114 (114)
T 2ee0_A 82 REE----TAIHKVTVLASD--GSST------PARATVTINVTDVN 114 (114)
T ss_dssp TTT----CSEEEEEEEEES--SSSS------CEEEEEEEEEECCC
T ss_pred ccc----CcEEEEEEEEEE--CCCC------ceEEEEEEEEEECC
Confidence 999 568999999997 4443 37889999999997
No 33
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=6e-25 Score=174.14 Aligned_cols=108 Identities=23% Similarity=0.332 Sum_probs=96.6
Q ss_pred CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-----CcEEEeCCeeEEEEcccCCCc
Q psy4200 1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-----DRFSLDRDSGELRVAQPLDRE 72 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-----~~F~Id~~tG~i~~~~~lD~e 72 (388)
|.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+| |+.|+|+|.++ .+|.|++.||.|+++++||||
T Consensus 4 V~DvNDn~P~F~~~~y~-~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~E 82 (119)
T 2yst_A 4 GSSGNDNSPRFEKSVYE-ADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDRE 82 (119)
T ss_dssp CCCSCCCCCCCSSSEEE-EEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCTT
T ss_pred EecCCCCCCCcCCCcEE-EEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCcc
Confidence 68999999999999999 9999999999999999999998 58999999864 379999999999999999999
Q ss_pred ccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEee
Q psy4200 73 YNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGD 152 (388)
Q Consensus 73 ~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~d 152 (388)
....|. |+|.|.|.+ ...+++.+.|+|.|.|
T Consensus 83 ~~~~y~--l~V~A~D~g-----------------------------------------------~p~~s~~~~v~I~V~D 113 (119)
T 2yst_A 83 EVNQLR--FTVMARDRG-----------------------------------------------QPPKTDKATVVLNIKD 113 (119)
T ss_dssp TCSEEE--EEEEECCSB-----------------------------------------------TTBCCEEEEEEEEEEC
T ss_pred cCCEEE--EEEEEEECC-----------------------------------------------CCCcEEEEEEEEEEEe
Confidence 999999 888887721 0124678899999999
Q ss_pred cCCCCC
Q psy4200 153 VQNTPP 158 (388)
Q Consensus 153 vNd~~P 158 (388)
+|||+|
T Consensus 114 vNDn~P 119 (119)
T 2yst_A 114 ENDNVP 119 (119)
T ss_dssp STTCCC
T ss_pred ccCCCC
Confidence 999998
No 34
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=99.91 E-value=1.2e-23 Score=184.88 Aligned_cols=123 Identities=26% Similarity=0.358 Sum_probs=110.8
Q ss_pred eEEEecCCCCC--cEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200 166 SGEIMESAPIG--SVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238 (388)
Q Consensus 166 ~~~v~E~~~~g--~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v 238 (388)
.++|.|+.+.| +.++++.|+|+|. .++|+|.+ ++.++|.|++.+|.|++.++||||. ...|.|.|
T Consensus 7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v 78 (218)
T 3k5r_A 7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRET----IATYQLYV 78 (218)
T ss_dssp CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CSEEEEEE
T ss_pred cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCccc----CCEEEEEE
Confidence 57899999988 8899999998875 68999974 3458999999999999999999999 56899999
Q ss_pred EEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304 (388)
Q Consensus 239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D 304 (388)
.|+| .|.+ .+++++.|.|+|.|+|||+|.|....|.+.|+|++++|+.|+ ++.|+|+|
T Consensus 79 ~a~D--~g~~----~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~--~v~A~D~D 136 (218)
T 3k5r_A 79 ETTD--ASGK----TLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVM--RMTAFDAD 136 (218)
T ss_dssp EEEC--SSSC----EEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEE--ECCCSCSS
T ss_pred EEEE--CCCC----ceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEE--EEEEEeCC
Confidence 9997 4443 578999999999999999999999999999999999999997 99999999
No 35
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=162.72 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=78.2
Q ss_pred CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEec------CCcEEEeCCeeEEEEcccCCC
Q psy4200 1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYG------TDRFSLDRDSGELRVAQPLDR 71 (388)
Q Consensus 1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~------~~~F~Id~~tG~i~~~~~lD~ 71 (388)
|.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+| |+.|+|+|.+ ..+|.|++.||.|+++++|||
T Consensus 4 V~DvNDn~P~F~~~~y~-~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD~ 82 (114)
T 2ee0_A 4 GSSGNDNRPVFKEGQVE-VHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR 82 (114)
T ss_dssp CCCCCCCCCCCSCSEEE-EEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCCT
T ss_pred EeeCCCCCCCcCCCcEE-EEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCCc
Confidence 68999999999999999 9999999999999999999998 5899999975 247999999999999999999
Q ss_pred cccceeeEEEEEEEEe
Q psy4200 72 EYNSTNTSTIVLTLEG 87 (388)
Q Consensus 72 e~~~~~~~~l~v~a~D 87 (388)
|....|. |+|.|.|
T Consensus 83 E~~~~y~--l~V~A~D 96 (114)
T 2ee0_A 83 EETAIHK--VTVLASD 96 (114)
T ss_dssp TTCSEEE--EEEEEES
T ss_pred ccCcEEE--EEEEEEE
Confidence 9999999 8888877
No 36
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.2e-22 Score=159.01 Aligned_cols=113 Identities=22% Similarity=0.300 Sum_probs=101.4
Q ss_pred cCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecC-----CCCceEEeCCeeEEEecccCCcccc
Q psy4200 153 VQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTN-----PDEFFLIDSNTGELKTAKPLDREIL 227 (388)
Q Consensus 153 vNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~~~LD~E~~ 227 (388)
.+.+.|.|....|.+.+.|++++|+.|+++. +|+|.+.|+.++|+|.+. ..++|.|++.+|.|+++++||||.
T Consensus 5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~- 82 (123)
T 2yqg_A 5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREE- 82 (123)
T ss_dssp SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTT-
T ss_pred ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCccc-
Confidence 3578999999999988899999999999999 699999999999999863 357999999999999999999999
Q ss_pred CCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCC
Q psy4200 228 GGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNR 276 (388)
Q Consensus 228 ~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~ 276 (388)
...|.|.|.|+| .|.+ .+++++.|.|+|.|+|||+|.|.+
T Consensus 83 ---~~~y~l~V~A~D--~g~p----~~~~~~~v~I~V~DvNDn~P~F~~ 122 (123)
T 2yqg_A 83 ---TPFFLLTGYALD--ARGN----NVEKPLELRIKVLDINDNEPVFTQ 122 (123)
T ss_dssp ---BSEEEEEEEEEC--TTCC----EEEEEECCEEEEECTTCCCCCCCC
T ss_pred ---CceEEEEEEEEE--CCCC----ceEEEEEEEEEEEEcCCCCCEeCC
Confidence 568999999997 4543 678899999999999999999975
No 37
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.85 E-value=2.8e-20 Score=165.13 Aligned_cols=134 Identities=23% Similarity=0.245 Sum_probs=105.7
Q ss_pred CcceEEEecCCCCCcEEEEEEE-eeCCCCCCceEEEEEecCCCCceEEeCCeeEEEec---ccCCccccCCcccEEEEEE
Q psy4200 163 SSFSGEIMESAPIGSVVLRVEA-KDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTA---KPLDREILGGTNGVISLTV 238 (388)
Q Consensus 163 ~~~~~~v~E~~~~g~~v~~v~A-~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~---~~LD~E~~~~~~~~~~l~v 238 (388)
+.+..+|.|++++|+.+..+.+ .|.|.+.++.++|+|.++...+|.|++.+|.+.+. +.||||.... -..+.+.+
T Consensus 20 P~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~-~~~~~~~v 98 (242)
T 4apx_B 20 PATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMN-IHSIVVQV 98 (242)
T ss_dssp SSEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTEEEECCTTSCCCCSTTTC-CCEEEEEE
T ss_pred CeEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCCCceEEECCCCCEEEEEecCCceeccCCCc-eEEEEEEE
Confidence 3567899999999999876544 55556778899999997777899999999999874 6799998542 12344445
Q ss_pred EEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeee---EEEEeeCC
Q psy4200 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDL---DMIVTDSD 304 (388)
Q Consensus 239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l---~l~a~D~D 304 (388)
.|.+ +.. .....+.|.|.|.|+|||+|.|.+..|.+.|+|+.++|+.|.++ .+.|+|+|
T Consensus 99 ~~~~---~~~----~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D 160 (242)
T 4apx_B 99 QCVN---KKV----GTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDID 160 (242)
T ss_dssp EEEE---TTT----CCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCS
T ss_pred EeEC---CCC----CeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCC
Confidence 5553 222 35677889999999999999999999999999999999998411 26799999
No 38
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-20 Score=148.87 Aligned_cols=108 Identities=21% Similarity=0.311 Sum_probs=93.4
Q ss_pred cCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcc
Q psy4200 4 YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREY 73 (388)
Q Consensus 4 ~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~ 73 (388)
.+.+.|.|....|. +.+.|++++|+.|++|. +|+| |+.|+|+|.+. +.|.|++.||.|+++++||||.
T Consensus 5 ~~r~~p~f~~~~~~-v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~ 82 (123)
T 2yqg_A 5 SSGQKRAWITAPVA-LREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREE 82 (123)
T ss_dssp SSCSCCSSCCCCEE-EESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTT
T ss_pred ccccCCccCCCCEE-EEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCccc
Confidence 46889999999988 88888999999999999 5887 68999999863 5899999999999999999999
Q ss_pred cceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeec
Q psy4200 74 NSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDV 153 (388)
Q Consensus 74 ~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dv 153 (388)
...|. |+|.|.|.. ...+++.+.|.|.|.|+
T Consensus 83 ~~~y~--l~V~A~D~g-----------------------------------------------~p~~~~~~~v~I~V~Dv 113 (123)
T 2yqg_A 83 TPFFL--LTGYALDAR-----------------------------------------------GNNVEKPLELRIKVLDI 113 (123)
T ss_dssp BSEEE--EEEEEECTT-----------------------------------------------CCEEEEEECCEEEEECT
T ss_pred CceEE--EEEEEEECC-----------------------------------------------CCceEEEEEEEEEEEEc
Confidence 99999 888887721 00146678999999999
Q ss_pred CCCCCeeeC
Q psy4200 154 QNTPPIFIN 162 (388)
Q Consensus 154 Nd~~P~f~~ 162 (388)
|||+|+|.+
T Consensus 114 NDn~P~F~~ 122 (123)
T 2yqg_A 114 NDNEPVFTQ 122 (123)
T ss_dssp TCCCCCCCC
T ss_pred CCCCCEeCC
Confidence 999999975
No 39
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.80 E-value=9.6e-20 Score=141.73 Aligned_cols=98 Identities=23% Similarity=0.366 Sum_probs=76.1
Q ss_pred cceEEEecCCCCCcE--EEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEE
Q psy4200 164 SFSGEIMESAPIGSV--VLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISL 236 (388)
Q Consensus 164 ~~~~~v~E~~~~g~~--v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l 236 (388)
.|.++|+|+.++|+. |+++ |.|.+.|+.++|+|.+ +..++|.|++.+|.|++.++||||. ...|.|
T Consensus 6 ~~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l 78 (110)
T 1ncg_A 6 IPPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREL----IARFHL 78 (110)
T ss_dssp CCCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEE
T ss_pred eeeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCccc----CCeEEE
Confidence 468899999999995 4554 6787888999999985 2457999999999999999999999 568999
Q ss_pred EEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCcc
Q psy4200 237 TVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274 (388)
Q Consensus 237 ~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f 274 (388)
.|.|+| .|.+ .+++++.|.|+|.|+|||+|.|
T Consensus 79 ~V~A~D--~g~p----~~~~~~~v~I~V~DvNDn~P~F 110 (110)
T 1ncg_A 79 RAHAVD--INGN----QVENPIDIVINVIDMNDNRPEF 110 (110)
T ss_dssp EEEEEC--TTSC----BCSCCEEEEEEEC---------
T ss_pred EEEEEE--CCCC----ceeeEEEEEEEEEECCCCCCCC
Confidence 999997 4543 5788999999999999999998
No 40
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.76 E-value=1.5e-18 Score=134.92 Aligned_cols=95 Identities=20% Similarity=0.339 Sum_probs=69.7
Q ss_pred CCcceEEecCCCCCcE--EEEEEEECCC-CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEE
Q psy4200 15 VNSPLVVEENTPPGTI--VSTLEGVDPE-GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLT 84 (388)
Q Consensus 15 ~~~~~~v~E~~~~gt~--v~~v~a~D~D-~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~ 84 (388)
.|. ++|+||+++|+. |+++ +.|.+ |+.|+|+|.++ +.|.|++.||.|+++++||||+...|. |+|.
T Consensus 6 ~~~-~~v~En~~~gt~~~v~~v-d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~ 81 (110)
T 1ncg_A 6 IPP-INLPENSRGPFPQELVRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH--LRAH 81 (110)
T ss_dssp CCC-EEECSSCCCCSSEEEEEC-CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEE
T ss_pred eee-EEEeCCCCCCCcEEEEEE-eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEE--EEEE
Confidence 356 999999999994 6666 34443 79999999852 479999999999999999999999999 8888
Q ss_pred EEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCee
Q psy4200 85 LEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIF 160 (388)
Q Consensus 85 a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f 160 (388)
|.|.+ ...+++.+.+.|.|.|+|||+|+|
T Consensus 82 A~D~g-----------------------------------------------~p~~~~~~~v~I~V~DvNDn~P~F 110 (110)
T 1ncg_A 82 AVDIN-----------------------------------------------GNQVENPIDIVINVIDMNDNRPEF 110 (110)
T ss_dssp EECTT-----------------------------------------------SCBCSCCEEEEEEEC---------
T ss_pred EEECC-----------------------------------------------CCceeeEEEEEEEEEECCCCCCCC
Confidence 88721 012466789999999999999998
No 41
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.2e-19 Score=144.25 Aligned_cols=109 Identities=27% Similarity=0.376 Sum_probs=90.7
Q ss_pred CcceEEEecCCCCCcEEEEEEEeeCCCCCCceE---EEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200 163 SSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSI---YYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238 (388)
Q Consensus 163 ~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v---~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v 238 (388)
..|..+|+|+.++|+.|+++ |+|+|.+. +.+ +|+|.+ +..++|.||+.||.|++.++||||........|.|.+
T Consensus 11 ~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v 88 (125)
T 1wyj_A 11 ATITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHF 88 (125)
T ss_dssp CCCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCC
T ss_pred ceEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEEE
Confidence 56778999999999999999 99998764 344 899975 4567999999999999999999999632225799999
Q ss_pred EEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEE
Q psy4200 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282 (388)
Q Consensus 239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~ 282 (388)
.|.+ +.| ...+.|.|.|.|+|||+|.|.+..|.++
T Consensus 89 ~a~~---~~p------~~~~~V~I~V~DvNDN~P~F~~~~y~vs 123 (125)
T 1wyj_A 89 QVLL---KSP------VQFIQGEIQLQDVNDHAPEFMEDESGPS 123 (125)
T ss_dssp EEEE---TTT------TEEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred EEEE---CCC------CeEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence 9995 333 2478999999999999999999888754
No 42
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=4.4e-19 Score=140.87 Aligned_cols=102 Identities=22% Similarity=0.284 Sum_probs=85.3
Q ss_pred cCCCcceEEecCCCCCcEEEEEEEECCCC--CeE---EEEEec---CCcEEEeCCeeEEEEcccCCCccc----ceeeEE
Q psy4200 13 TDVNSPLVVEENTPPGTIVSTLEGVDPEG--SKV---KYGIYG---TDRFSLDRDSGELRVAQPLDREYN----STNTST 80 (388)
Q Consensus 13 ~~~~~~~~v~E~~~~gt~v~~v~a~D~D~--~~i---~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~----~~~~~~ 80 (388)
...+. ++|+|++++|+.|++| |+|.|. +.+ +|+|.+ .++|.||+.||.|+++++||||+. ..|.
T Consensus 10 ~~~~~-~~V~E~~~~Gt~V~~v-a~D~d~~~~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~-- 85 (125)
T 1wyj_A 10 SATIT-YSVLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCI-- 85 (125)
T ss_dssp CCCCC-EEECSSCCTTCEEEES-TTTTTCCHHHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCC--
T ss_pred CceEE-EEEECCCCCCCEEEEE-EecCCCCCCceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEE--
Confidence 34677 8999999999999999 999884 345 899975 358999999999999999999999 8888
Q ss_pred EEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCee
Q psy4200 81 IVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIF 160 (388)
Q Consensus 81 l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f 160 (388)
|.+.|.+.+| ...+.|.|.|.|+|||+|+|
T Consensus 86 l~v~a~~~~p--------------------------------------------------~~~~~V~I~V~DvNDN~P~F 115 (125)
T 1wyj_A 86 LHFQVLLKSP--------------------------------------------------VQFIQGEIQLQDVNDHAPEF 115 (125)
T ss_dssp BCCEEEETTT--------------------------------------------------TEEECCCEEECCCCCCCCCC
T ss_pred EEEEEEECCC--------------------------------------------------CeEEEEEEEEEEccCCCCcC
Confidence 7777766322 23568899999999999999
Q ss_pred eCCcceEE
Q psy4200 161 INSSFSGE 168 (388)
Q Consensus 161 ~~~~~~~~ 168 (388)
.+..|.++
T Consensus 116 ~~~~y~vs 123 (125)
T 1wyj_A 116 MEDESGPS 123 (125)
T ss_dssp CCCCCCCC
T ss_pred CCcEEEEe
Confidence 99888654
No 43
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.68 E-value=1.5e-16 Score=120.64 Aligned_cols=90 Identities=23% Similarity=0.222 Sum_probs=78.7
Q ss_pred ceEEEecCCC--CCcEEEEEEEeeCCCCCCceEEEEEecC-CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEE
Q psy4200 165 FSGEIMESAP--IGSVVLRVEAKDGDLAQPRSIYYDLLTN-PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAR 241 (388)
Q Consensus 165 ~~~~v~E~~~--~g~~v~~v~A~D~D~~~~~~v~y~l~~~-~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~ 241 (388)
+.++|+||.+ .|+.|+++. +|+|.| |+.++|+|.+. ..+.|.|++.+|.|++.++||||. ...|.|.|.|+
T Consensus 6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~V~A~ 79 (99)
T 1zvn_A 6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREE----RSQYTLRAQAL 79 (99)
T ss_dssp CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTT----CSEEEEEEEEE
T ss_pred cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCcc----CCeEEEEEEEE
Confidence 5678999976 689999999 999999 99999999873 346899999999999999999999 56899999999
Q ss_pred EccCC-CCcCCCCceEEEEEEEEEcc
Q psy4200 242 EMVDG-KPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 242 D~~~g-~~~~~~~~~~~~~v~I~V~d 266 (388)
| .| .+ ++++.+.|.|+|.|
T Consensus 80 D--~G~~p----~l~~~~~v~I~V~D 99 (99)
T 1zvn_A 80 D--RRTGR----PMEPESEFIIKIQD 99 (99)
T ss_dssp E--TTTCC----BSSCCEEEEEEEEC
T ss_pred E--CCCCC----CcceeEEEEEEEeC
Confidence 8 55 23 57888999999986
No 44
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.68 E-value=1.6e-16 Score=120.42 Aligned_cols=91 Identities=23% Similarity=0.255 Sum_probs=77.2
Q ss_pred ceEEEecCCC--CCcEEEEEEEeeCCCCCCceEEEEEecC-CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEE
Q psy4200 165 FSGEIMESAP--IGSVVLRVEAKDGDLAQPRSIYYDLLTN-PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAR 241 (388)
Q Consensus 165 ~~~~v~E~~~--~g~~v~~v~A~D~D~~~~~~v~y~l~~~-~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~ 241 (388)
+.++|.||.+ .|+.|+++. +|+|.| |+.++|+|.++ ..+.|.||+.+|.|++.++||||. ...|.|.|.|+
T Consensus 5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~A~ 78 (98)
T 1zxk_A 5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE----KAEYTLTAQAV 78 (98)
T ss_dssp CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTT----CSEEEEEEEEE
T ss_pred ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcC----CCeEEEEEEEE
Confidence 5678999984 899999997 999999 99999999874 446899999999999999999999 56899999999
Q ss_pred EccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 242 EMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 242 D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
| .|.+ +++++++.|.|.|.|
T Consensus 79 D--~g~~---~~l~~~~~v~I~V~D 98 (98)
T 1zxk_A 79 D--FETN---KPLEPPSEFIIKVQD 98 (98)
T ss_dssp E--TTTC---CBSSCCEEEEEEECC
T ss_pred E--CCCC---CCcceeEEEEEEEEC
Confidence 8 5542 257888999999986
No 45
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.64 E-value=1e-15 Score=116.32 Aligned_cols=88 Identities=26% Similarity=0.314 Sum_probs=77.2
Q ss_pred ceEEEecCCCC--CcEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEE
Q psy4200 165 FSGEIMESAPI--GSVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLT 237 (388)
Q Consensus 165 ~~~~v~E~~~~--g~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~ 237 (388)
..++|+||.++ |+.|++|.|+|+|. .++|+|.+ ++.+.|.|++.+|.|++.++||||. ...|.|.
T Consensus 5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~ 76 (99)
T 3k6d_A 5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREA----IPSYQLQ 76 (99)
T ss_dssp CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEEE
T ss_pred CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCccc----CceEEEE
Confidence 45789999999 99999999999997 68999974 2357999999999999999999999 6689999
Q ss_pred EEEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 238 VRAREMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 238 v~a~D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
|.|+| .|.+ .+++.+.|.|+|.|
T Consensus 77 V~A~D--~g~~----~l~~~~~v~I~V~D 99 (99)
T 3k6d_A 77 VETTD--ENGK----TIEGPVDLEILVID 99 (99)
T ss_dssp EEEEC--TTCC----EEEEEEEEEEEEEC
T ss_pred EEEEE--CCCC----ceeeEEEEEEEEEC
Confidence 99997 4543 67889999999986
No 46
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.62 E-value=2.7e-15 Score=114.27 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=76.4
Q ss_pred eEEEecCCCC--CcEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200 166 SGEIMESAPI--GSVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238 (388)
Q Consensus 166 ~~~v~E~~~~--g~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v 238 (388)
.++|.||.+. |+.|++|.|+|+|. .++|+|.+ ++.+.|.||+.+|.|++.++||||. ...|.|.|
T Consensus 7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~V 78 (100)
T 3k6f_A 7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRET----IATYQLYV 78 (100)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CSEEEEEE
T ss_pred cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcC----CCEEEEEE
Confidence 5689999998 89999999999997 58999975 2347999999999999999999999 56899999
Q ss_pred EEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 239 RAREMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
.|+| .|.+ .+++.++|.|+|.|
T Consensus 79 ~A~D--~g~p----~l~~~~~v~I~V~D 100 (100)
T 3k6f_A 79 ETTD--ASGK----TLEGPVPLEVIVID 100 (100)
T ss_dssp EEEC--TTCC----EEEEEEEEEEEEEC
T ss_pred EEEE--CCCC----cccceEEEEEEEEC
Confidence 9997 4544 67889999999986
No 47
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.62 E-value=4.2e-15 Score=113.01 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=76.4
Q ss_pred eEEEecCCCCC--cEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200 166 SGEIMESAPIG--SVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238 (388)
Q Consensus 166 ~~~v~E~~~~g--~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v 238 (388)
.++|.||.+.| +.|++|.|+|+|. .++|+|.+ ++.+.|.||+.+|.|++.++||||. ...|.|.|
T Consensus 6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v 77 (99)
T 3k6i_A 6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREA----IANYELEV 77 (99)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEEEE
T ss_pred cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCcc----CCEEEEEE
Confidence 46899999987 8999999999997 79999985 2347999999999999999999999 56899999
Q ss_pred EEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 239 RAREMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
.|+| .|.+ .+++.+++.|.|.|
T Consensus 78 ~A~D--~g~~----~l~~~~~v~I~V~D 99 (99)
T 3k6i_A 78 EVTD--LSGK----IIDGPVRLDISVID 99 (99)
T ss_dssp EEEE--TTSC----EEEEEEEEEEEEEC
T ss_pred EEEE--CCCC----ceeeeEEEEEEEEC
Confidence 9998 5554 67899999999986
No 48
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.61 E-value=2.7e-15 Score=113.98 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=61.7
Q ss_pred eEEecCCCC--CcEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200 19 LVVEENTPP--GTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG 87 (388)
Q Consensus 19 ~~v~E~~~~--gt~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D 87 (388)
++|+||.++ |+.|++|.|+|+|. .++|+|.+. +.|.||+.||.|++.++||||+...|. |+|.|.|
T Consensus 7 ~~V~En~~~~~g~~v~~v~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~A~D 81 (99)
T 3k6d_A 7 ISIPENQRIPFPKIVGRVVVSDRIP-GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQ--LQVETTD 81 (99)
T ss_dssp EEEETTCCSCSSEEEEECBCSSCCT-TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEEEEC
T ss_pred EEEeCCCCCCCCcEEEEEEEECCCC-cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEE--EEEEEEE
Confidence 899999999 99999999999998 899999852 589999999999999999999999999 8888887
No 49
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.60 E-value=5.8e-15 Score=112.24 Aligned_cols=66 Identities=23% Similarity=0.413 Sum_probs=61.7
Q ss_pred eEEecCCCCC--cEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200 19 LVVEENTPPG--TIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG 87 (388)
Q Consensus 19 ~~v~E~~~~g--t~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D 87 (388)
++|+||.+.| +.|++|.|+|+|. .|+|+|.+. +.|.||+.||.|++.++||||+...|. |+|.|.|
T Consensus 7 ~~v~EN~~~g~~~~v~~V~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~A~D 81 (99)
T 3k6i_A 7 ILIPENQRPPFPRSVGKVIRSEGTE-GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYE--LEVEVTD 81 (99)
T ss_dssp EEEETTCCSSSCEEEEECEETTCCS-SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEEEEE
T ss_pred EEEeCCCCCCCCeEEEEEEEEcCCC-eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEE--EEEEEEE
Confidence 8999999997 8999999999999 999999852 489999999999999999999999999 9988888
No 50
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.60 E-value=4.1e-15 Score=113.21 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=61.3
Q ss_pred eEEecCCCC--CcEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200 19 LVVEENTPP--GTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG 87 (388)
Q Consensus 19 ~~v~E~~~~--gt~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D 87 (388)
++|+||.+. |+.|++|.|+|+|. .|+|+|.+. +.|.||+.||.|++.++||||+...|. |+|.|.|
T Consensus 8 ~~V~EN~~~~~g~~v~~V~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~A~D 82 (100)
T 3k6f_A 8 ILIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQ--LYVETTD 82 (100)
T ss_dssp EEEETTCCSSSCEEEEECEETTCCT-TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEC
T ss_pred EEEeCCCCCCCCcEEEEEEEEcCCC-CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEE--EEEEEEE
Confidence 899999998 89999999999998 899999852 489999999999999999999999999 8888887
No 51
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.59 E-value=2.5e-15 Score=115.43 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=75.1
Q ss_pred eEEEecCCC--CCcEEEEEEEeeCCCCCCceEEEEEecCC-----CCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200 166 SGEIMESAP--IGSVVLRVEAKDGDLAQPRSIYYDLLTNP-----DEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238 (388)
Q Consensus 166 ~~~v~E~~~--~g~~v~~v~A~D~D~~~~~~v~y~l~~~~-----~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v 238 (388)
.++|+||.+ .|+.|+++.| |.+.|+.++|+|.+.. .++|.||+.+|.|++.++||||. ...|.|.|
T Consensus 10 ~~~V~En~~~~~~~~v~~v~A---d~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~----~~~y~l~V 82 (105)
T 2omz_B 10 PISCPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRER----IATYTLFS 82 (105)
T ss_dssp CCCEESSCCSSSSEEEEECEE---GGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEEEE
T ss_pred CEEEeCCCCCCCCcEEEEEEC---CCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCC----CCeEEEEE
Confidence 468999998 5889999999 3356899999998632 36899999999999999999999 56899999
Q ss_pred EEEEccCCCCcCCCCceEEEEEEEEEccc
Q psy4200 239 RAREMVDGKPLQEDQATAFAQVTVTILDV 267 (388)
Q Consensus 239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dv 267 (388)
.|+| .|.+ .+++++.|.|.|.|+
T Consensus 83 ~A~D--~g~p----~~~~~~~v~I~V~Dv 105 (105)
T 2omz_B 83 HAVS--SNGN----AVEDPMEILITVTDQ 105 (105)
T ss_dssp EEEC--TTSC----BSSCCEEEEEEEEC-
T ss_pred EEEE--CCCC----ceeeEEEEEEEEEeC
Confidence 9997 5554 678889999999985
No 52
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.56 E-value=6.7e-15 Score=113.05 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=60.4
Q ss_pred eEEecCCC--CCcEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200 19 LVVEENTP--PGTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG 87 (388)
Q Consensus 19 ~~v~E~~~--~gt~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D 87 (388)
++|+||++ .|+.|+++.|.|..|+.|+|+|.++ +.|.||+.||.|++.++||||+...|. |+|.|.|
T Consensus 11 ~~V~En~~~~~~~~v~~v~Ad~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~--l~V~A~D 86 (105)
T 2omz_B 11 ISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYT--LFSHAVS 86 (105)
T ss_dssp CCEESSCCSSSSEEEEECEEGGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEEEEC
T ss_pred EEEeCCCCCCCCcEEEEEECCCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEE--EEEEEEE
Confidence 78999999 5889999999655589999999863 379999999999999999999999999 8888888
No 53
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.56 E-value=2e-14 Score=108.96 Aligned_cols=66 Identities=27% Similarity=0.354 Sum_probs=61.2
Q ss_pred eEEecCCC--CCcEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200 19 LVVEENTP--PGTIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG 87 (388)
Q Consensus 19 ~~v~E~~~--~gt~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D 87 (388)
++|+||.+ .|+.|++|. +|+| |+.|+|+|.++ +.|.||+.+|.|++.++||||+...|. |+|.|+|
T Consensus 8 ~~v~En~~~~~g~~v~~v~-~D~D~gNg~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~A~D 80 (99)
T 1zvn_A 8 FFVLEEYTGTDPLYVGKLH-SDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYT--LRAQALD 80 (99)
T ss_dssp EEEEGGGCSSSCEEEEECC-BTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEE
T ss_pred EEEECCCCCCCCcEEEEEE-ECCCCCCCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEE--EEEEEEE
Confidence 89999976 689999999 9999 79999999874 369999999999999999999999999 9999998
No 54
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.55 E-value=2e-14 Score=108.77 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=60.4
Q ss_pred CcceEEecCCC--CCcEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200 16 NSPLVVEENTP--PGTIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG 87 (388)
Q Consensus 16 ~~~~~v~E~~~--~gt~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D 87 (388)
+. ++|+||.+ .|+.|+++. +|+| |+.|+|+|.+. +.|.||+.||.|++.++||||+...|. |+|.|.|
T Consensus 5 ~~-~~v~En~~~p~~~~v~~v~-~D~D~gN~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~A~D 79 (98)
T 1zxk_A 5 NQ-MFVLEEFSGPEPILVGRLH-TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYT--LTAQAVD 79 (98)
T ss_dssp CE-EEECGGGCSSSCEEEEECC-BCCCCC--CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEE
T ss_pred ce-EEEECCCCCCCCeEEEEEE-ECCCCCCCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEE--EEEEEEE
Confidence 44 89999995 899999997 9998 58999999864 379999999999999999999999999 9999998
No 55
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.49 E-value=4.8e-15 Score=113.47 Aligned_cols=98 Identities=24% Similarity=0.333 Sum_probs=75.7
Q ss_pred CcceEEEecCCCCCcEEEEEEEeeCCCCCC--ceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEE
Q psy4200 163 SSFSGEIMESAPIGSVVLRVEAKDGDLAQP--RSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVR 239 (388)
Q Consensus 163 ~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~--~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~ 239 (388)
..+..+|+|+.++|+.|+++ |.|+|.+.+ +.++|+|.+ +...+|.|++.||.|++.++||||........|.+.+.
T Consensus 3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~ 81 (103)
T 1wuz_A 3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLE 81 (103)
T ss_dssp CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEE
T ss_pred eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEE
Confidence 45678999999999999999 999886532 357899975 45689999999999999999999986422233455555
Q ss_pred EEEccCCCCcCCCCceEEEEEEEEEcccCCC
Q psy4200 240 AREMVDGKPLQEDQATAFAQVTVTILDVNDS 270 (388)
Q Consensus 240 a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~ 270 (388)
+.. +.| . ..+.+.|+|.|+|||
T Consensus 82 v~~---~~p-----~-~~~~v~I~V~DiNDN 103 (103)
T 1wuz_A 82 VIV---DRP-----L-QVFHVEVEVRDINDN 103 (103)
T ss_dssp EEE---TTT-----T-EEEEEEEEEECCSCC
T ss_pred EEE---CCC-----C-EEEEEEEEEEEcCCC
Confidence 542 222 2 378999999999997
No 56
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.37 E-value=4.7e-14 Score=107.87 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=51.3
Q ss_pred CCcceEEecCCCCCcEEEEEEEECCCC-----CeEEEEEec---CCcEEEeCCeeEEEEcccCCCcccc
Q psy4200 15 VNSPLVVEENTPPGTIVSTLEGVDPEG-----SKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYNS 75 (388)
Q Consensus 15 ~~~~~~v~E~~~~gt~v~~v~a~D~D~-----~~i~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~~ 75 (388)
.+. ++|+|++++|+.|++| |.|.|. ..++|+|.+ ..+|.||+.||.|+++++||||+.+
T Consensus 4 ~~~-~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~ 70 (103)
T 1wuz_A 4 QIH-YSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELC 70 (103)
T ss_dssp EEE-EEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHC
T ss_pred eEE-EEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCcccccc
Confidence 356 8999999999999999 998873 368999975 3589999999999999999999863
No 57
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=94.98 E-value=0.044 Score=44.05 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=62.3
Q ss_pred CCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC-CeEEEEEecCCcEEEeCCeeEEEEcccCCCcccceeeEEEEEE
Q psy4200 6 NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG-SKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLT 84 (388)
Q Consensus 6 d~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~-~~i~y~i~~~~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~ 84 (388)
-+-|-|.+..|. ..++-+...|..|++|.-.|..+ ..+.|....+..|.|++ .|.|++.+++-.-. .... +.|.
T Consensus 31 ~C~pGF~~~~~~-~~vp~~l~~g~~lgkV~F~dC~g~~~~~~~ssDp~dFkV~~-DGtVya~r~v~L~~-~~~~--F~V~ 105 (159)
T 1op4_A 31 LCKTGFPEDVYS-AVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDE-DGTVYAVRSFPLTA-EQAK--FLIY 105 (159)
T ss_dssp CCCCBCCSCEEE-ECCCCSSCSSCCEEECCCBCCSSCCCEEEECCCSSEEEEET-TTEEEEESCCSCSS-SCEE--EEEE
T ss_pred cccCCcCcceeE-EeccccccCCceeceeecccCCCCCceeEEcCCCCCeEEeC-CCcEEEecceeecC-CCcE--EEEE
Confidence 467999999996 99999999999999999999875 56778765555899998 79999999864322 2235 8899
Q ss_pred EEe
Q psy4200 85 LEG 87 (388)
Q Consensus 85 a~D 87 (388)
|.|
T Consensus 106 a~D 108 (159)
T 1op4_A 106 AQD 108 (159)
T ss_dssp EEE
T ss_pred EEc
Confidence 998
No 58
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=83.49 E-value=5.1 Score=37.68 Aligned_cols=77 Identities=25% Similarity=0.389 Sum_probs=41.6
Q ss_pred CCCCCeeccCCC---cceEEecCCCCCcEEEEEEE---ECCCCCeEEEEEe--cCC-----cEEEe-CCeeEEEEcccCC
Q psy4200 5 GNSPPSFTTDVN---SPLVVEENTPPGTIVSTLEG---VDPEGSKVKYGIY--GTD-----RFSLD-RDSGELRVAQPLD 70 (388)
Q Consensus 5 nd~~P~F~~~~~---~~~~v~E~~~~gt~v~~v~a---~D~D~~~i~y~i~--~~~-----~F~Id-~~tG~i~~~~~lD 70 (388)
.|++|+-.-..- .+ +.-....|..| ++.| +|+||+.++|+.. .+. ...|. ..+..+++.-+-+
T Consensus 330 aNhaPVa~iag~~g~~p--~~~~v~aG~tV-tLdAs~SsDPDGD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~ 406 (437)
T 2yhg_A 330 ANHHPVPVVNNDANEAV--MYLNASAGSTV-SLDASGSSDPDGDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN 406 (437)
T ss_dssp SCCCCBCCBTTBCCSSC--EEEEECTTCEE-EEECTTCBCTTCCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT
T ss_pred CCCCCEEEecCCCcccc--cceEecCCCEE-EEEeeeeeCCCCCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCC
Confidence 467887763221 10 11223445554 4555 4999999999997 222 44553 3344555554433
Q ss_pred CcccceeeEEEEEEEEe
Q psy4200 71 REYNSTNTSTIVLTLEG 87 (388)
Q Consensus 71 ~e~~~~~~~~l~v~a~D 87 (388)
+....+. |+++|+|
T Consensus 407 -~~~~tl~--f~LtVTD 420 (437)
T 2yhg_A 407 -AGGKDIH--ILLTLRD 420 (437)
T ss_dssp -CTTCEEE--EEEEEEE
T ss_pred -CCCcEEE--EEEEEEe
Confidence 2344555 6666666
No 59
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=82.46 E-value=19 Score=29.56 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=63.9
Q ss_pred ccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCC---CCCeeeeeEEEEeeCC-eE
Q psy4200 231 NGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIP---DGSLLPDLDMIVTDSD-LV 306 (388)
Q Consensus 231 ~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~---~g~~v~~l~l~a~D~D-~v 306 (388)
.+.|.|+++|+|. .|. .+....+.|.|.+ ..+|.. .+.-+.+.. .|..+. |+..|+|.| .+
T Consensus 60 ~G~htlta~A~D~-aGn------~s~s~~v~vtV~~--~~~Ptv-----~itsP~~g~~~~~~~~vt-l~~~AsD~~g~V 124 (190)
T 3pdd_A 60 VGAYNLKAVAVLS-DGR------RIESPVTPVLVKV--IVKPTV-----KLTAPKSNVVAYGNEFLK-ITATASDSDGKI 124 (190)
T ss_dssp SEEEEEEEEEEET-TSC------EEECCCEEEEEEC--CCCCEE-----EEEECCTTCCCBTTSEEE-EEEEEECSSSCE
T ss_pred CccEEEEEEEEEC-CCC------EeeecceeEEecc--CCCCce-----eecCCCCCcEEecCCeEE-EEEEEECCCCcE
Confidence 4579999999985 343 2233456777765 467764 234444432 355553 566677665 11
Q ss_pred EEEecCCCceeEEEEEEEEEEEeCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEc
Q psy4200 307 IAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLG 380 (388)
Q Consensus 307 ~~~~~~~~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~ 380 (388)
-..+---+..+-.+ + . ...|.+...- ..|..-++++|+|.........++++.+..
T Consensus 125 ~~Ve~~~dg~~v~t--------~--t------~~~y~~~~~~--~~G~~tl~a~A~D~aGn~s~s~~vtvtv~~ 180 (190)
T 3pdd_A 125 SRVDFLVDGEVIGS--------D--R------EAPYEYEWKA--VEGNHEISVIAYDDDDAASTPDSVKIFVKQ 180 (190)
T ss_dssp EEEEEEETTEEEEE--------E--C------SSSEEEEEEC--CSEEEEEEEEEEETTCCBCCCEEEEEEEBC
T ss_pred EEEEEEECCEEEec--------c--c------CCCEEEEEec--CCeeEEEEEEEEECCCCEEecceEEEEECC
Confidence 11110000111110 1 1 1345555554 789999999999998655443446666653
No 60
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=79.10 E-value=14 Score=34.61 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=55.5
Q ss_pred ecCCCCCeee-CCcc-----eEEEecCCCCCcEEEEEEE---eeCCCCCCceEEEEEec--CC---CCceEEe-CCeeEE
Q psy4200 152 DVQNTPPIFI-NSSF-----SGEIMESAPIGSVVLRVEA---KDGDLAQPRSIYYDLLT--NP---DEFFLID-SNTGEL 216 (388)
Q Consensus 152 dvNd~~P~f~-~~~~-----~~~v~E~~~~g~~v~~v~A---~D~D~~~~~~v~y~l~~--~~---~~~F~id-~~tG~i 216 (388)
..| ++|+.. ...- ..++. .|..| ++.| +|+|.. .++|+-.. ++ .....|. ..+..+
T Consensus 329 ~aN-haPVa~iag~~g~~p~~~~v~----aG~tV-tLdAs~SsDPDGD---~LtY~W~q~~g~g~~~~~vtls~~~~~~~ 399 (437)
T 2yhg_A 329 AAN-HHPVPVVNNDANEAVMYLNAS----AGSTV-SLDASGSSDPDGD---SLNYSWSHYGEADSYSGSVSISNSSSASA 399 (437)
T ss_dssp GSC-CCCBCCBTTBCCSSCEEEEEC----TTCEE-EEECTTCBCTTCC---CEEEEEEECTTTSSCCSCCCEETTTSSEE
T ss_pred cCC-CCCEEEecCCCcccccceEec----CCCEE-EEEeeeeeCCCCC---eEEEEEEEeCCCCccccceEeecCCCceE
Confidence 456 788876 2221 33333 34333 3444 488833 68887764 22 1245563 455566
Q ss_pred EecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEc
Q psy4200 217 KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTIL 265 (388)
Q Consensus 217 ~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~ 265 (388)
+...|-+- . ...|.|.++++| ++.| .+++...|.|+|.
T Consensus 400 sft~P~~~-~----~~tl~f~LtVTD--~~~p----~lTs~~rViVtV~ 437 (437)
T 2yhg_A 400 NVQIPSNA-G----GKDIHILLTLRD--NGSP----NLYAYRRVVINVQ 437 (437)
T ss_dssp EEECCTTC-T----TCEEEEEEEEEE--CSSS----CCEEEEEEEEEEC
T ss_pred EEEeCCCC-C----CcEEEEEEEEEe--CCCC----CccEEeEEEEEeC
Confidence 66655441 1 457999999998 5544 5788888888873
No 61
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=70.09 E-value=15 Score=29.31 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEE
Q psy4200 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVI 234 (388)
Q Consensus 155 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~ 234 (388)
.+-|-|.+..|...++-+...|..+++|.-.|-.. +..+.|... ....|.|+. .|.|.+++++..-. ..-
T Consensus 31 ~C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--~~~~~~~ss--Dp~dFkV~~-DGtVya~r~v~L~~-----~~~ 100 (159)
T 1op4_A 31 LCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESS--EPADFKVDE-DGTVYAVRSFPLTA-----EQA 100 (159)
T ss_dssp CCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECC--CSSEEEEET-TTEEEEESCCSCSS-----SCE
T ss_pred cccCCcCcceeEEeccccccCCceeceeecccCCC--CCceeEEcC--CCCCeEEeC-CCcEEEecceeecC-----CCc
Confidence 47899999999777777888899999988877653 346777764 223799975 79999998864322 124
Q ss_pred EEEEEEEEc
Q psy4200 235 SLTVRAREM 243 (388)
Q Consensus 235 ~l~v~a~D~ 243 (388)
.|.|.|.|.
T Consensus 101 ~F~V~a~D~ 109 (159)
T 1op4_A 101 KFLIYAQDK 109 (159)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEEcC
Confidence 888999973
No 62
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=65.94 E-value=29 Score=25.08 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=37.4
Q ss_pred CcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCce
Q psy4200 176 GSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQAT 255 (388)
Q Consensus 176 g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~ 255 (388)
+.......|.|.|.+. .++.|.+.+ .....+. ..+..+.-... .+.|.|.++|+|. .|. ..
T Consensus 17 ~~v~i~a~A~D~dg~V-~kVef~vdg---~~vg~dt-------~apy~~~w~~~-~G~htl~a~AtD~-~G~------~~ 77 (98)
T 3pe9_A 17 EFLKITATASDSDGKI-SRVDFLVDG---EVIGSDR-------EAPYEYEWKAV-EGNHEISVIAYDD-DDA------AS 77 (98)
T ss_dssp SEEEEEEEECCSSSCE-EEEEEEETT---EEEEEEC-------SSSEEEEEECC-SEEEEEEEEEEET-TCC------BC
T ss_pred CEEEEEEEEEeCCCCE-EEEEEEECC---EEecccc-------cCCEEEEEEcC-CccEEEEEEEEEC-CCC------EE
Confidence 4456777888877532 467777743 1111111 11111110001 3579999999995 343 23
Q ss_pred EEEEEEEEEcc
Q psy4200 256 AFAQVTVTILD 266 (388)
Q Consensus 256 ~~~~v~I~V~d 266 (388)
....+.|.|..
T Consensus 78 tS~~v~vtV~~ 88 (98)
T 3pe9_A 78 TPDSVKIFVKQ 88 (98)
T ss_dssp CCEEEEEEEEC
T ss_pred eeeEEEEEECc
Confidence 34566666653
No 63
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.00 E-value=31 Score=25.01 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.1
Q ss_pred CceeEEEEEEEEeecC
Q psy4200 139 HHTSKTNVDIRVGDVQ 154 (388)
Q Consensus 139 ~~~~~~~v~V~V~dvN 154 (388)
+.++...+.|.|...+
T Consensus 82 G~s~s~~v~VtV~~~~ 97 (102)
T 2yrl_A 82 NLQSQSSVNVIVKEES 97 (102)
T ss_dssp CCEEEEEEEEEEECCS
T ss_pred CCEEEeEEEEEEcCCC
Confidence 5677889999998776
No 64
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=55.01 E-value=85 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=19.8
Q ss_pred ccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200 231 NGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266 (388)
Q Consensus 231 ~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~d 266 (388)
.+.|.|+++|+|. .|. .+....+.|+|.+
T Consensus 152 ~G~~tl~a~A~D~-aGn------~s~s~~vtvtv~~ 180 (190)
T 3pdd_A 152 EGNHEISVIAYDD-DDA------ASTPDSVKIFVKQ 180 (190)
T ss_dssp SEEEEEEEEEEET-TCC------BCCCEEEEEEEBC
T ss_pred CeeEEEEEEEEEC-CCC------EEecceEEEEECC
Confidence 5689999999995 343 2345566776664
No 65
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=54.04 E-value=97 Score=27.37 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=32.3
Q ss_pred EEEEEEEeCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCc
Q psy4200 322 TLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEY 382 (388)
Q Consensus 322 ~v~I~V~dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~ 382 (388)
..+|+|.| ||++|.|.-..-..+|.|+. |....+|.-.-.- .+.-.+.|+..++.
T Consensus 111 ~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~Rs~~~---~g~vtV~~~T~dGT 165 (298)
T 3rb5_A 111 IATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMRYSGA---RGTVIVPYWTENDT 165 (298)
T ss_dssp EEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEEESCC---CSCEEEEEEEEEC-
T ss_pred eEEEEEec-cccccccccccccEEeecCC--ceEEEEEEEEecC---CCCEEEEEEecCCc
Confidence 44555666 67788876554456788875 5665555544332 23334777766543
No 66
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.56 E-value=36 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=23.3
Q ss_pred ccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccC
Q psy4200 231 NGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268 (388)
Q Consensus 231 ~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvN 268 (388)
.+.|.|++.++|. . ..+++..+.|.|...+
T Consensus 68 ~G~y~f~LTVtD~--~------G~s~s~~v~VtV~~~~ 97 (102)
T 2yrl_A 68 VGTYVFTLTVKDE--R------NLQSQSSVNVIVKEES 97 (102)
T ss_dssp SSEEEEEEEEEBT--T------CCEEEEEEEEEEECCS
T ss_pred CeEEEEEEEEEeC--C------CCEEEeEEEEEEcCCC
Confidence 4579999999972 2 2478889999998765
No 67
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=40.65 E-value=61 Score=23.60 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=27.7
Q ss_pred ccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCC
Q psy4200 220 KPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272 (388)
Q Consensus 220 ~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P 272 (388)
+..|... .+.|.+...++|. +| ..++++.+|.|.+..+..|
T Consensus 51 g~Vdt~k----~G~Y~VtY~VtDs-~G-------n~~t~trtVtV~~~~e~~~ 91 (103)
T 2kpn_A 51 GEVDTTK----AGTYVLTYTVTDS-KG-------HEVTAKQTVTVKVREEVKN 91 (103)
T ss_dssp SCCCSSS----CEEEEEEEEEECT-TS-------CEEEEEEEEEEECSSCCCC
T ss_pred CcccCCC----ceEEEEEEEEEcC-CC-------CEEEEEEEEEEeCCCcccC
Confidence 4455544 5789999999974 33 3567778888877554443
No 68
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=37.37 E-value=2.1e+02 Score=25.10 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=73.3
Q ss_pred cCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECC-C-CCeEEEEEecC-----CcEEEeCCeeEEEEcccCCCcccce
Q psy4200 4 YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-E-GSKVKYGIYGT-----DRFSLDRDSGELRVAQPLDREYNST 76 (388)
Q Consensus 4 ~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~-D-~~~i~y~i~~~-----~~F~Id~~tG~i~~~~~lD~e~~~~ 76 (388)
.+|.++.|....-. +.|.|+. |+.-.+|.-... . ...+.|...++ .-|. +.+|.|....- |. .
T Consensus 5 ddd~~g~i~F~~~~-y~V~E~~--g~v~vtV~R~g~~~~~vtV~y~T~~GTA~ag~Dy~--~~~gtl~F~~G---et--~ 74 (298)
T 3rb5_A 5 EADDPIRMYFEPGH-YTVMENC--GEFEVRVVRRGDISTYASVEYETQDGTASAGTDFV--GRKGLLSFPPG---VD--E 74 (298)
T ss_dssp ------CEEESSSE-EEEETTS--CCEECCEEECSCCSSCEEEEEEEEESSSCBTTTBC--CCEEEEEECTT---CC--E
T ss_pred CCCCceEEEEeCCE-EEEecCc--eEEEEEEEEECCCCccEEEEEEeeCCccCCCCCcc--ccceEEEECCC---ce--E
Confidence 35677888887777 8899997 666555554432 2 25577876532 1232 23566665432 11 1
Q ss_pred eeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeC-CC-ceeEEEEEEEEeecC
Q psy4200 77 NTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRD-GH-HTSKTNVDIRVGDVQ 154 (388)
Q Consensus 77 ~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d-~~-~~~~~~v~V~V~dvN 154 (388)
.. +.|.+.|.. ..|. .-++.+.+..-. +. +......+|+|.| |
T Consensus 75 kt--i~V~I~dD~-------------------------------~~E~-dEtF~v~Ls~p~~~a~lg~~~~atvtI~d-d 119 (298)
T 3rb5_A 75 QR--FRIEVIDDD-------------------------------VFEE-DECFYIRLFNPSEGVKLAVPMIATVMILD-D 119 (298)
T ss_dssp EC--CEECBCCCS-------------------------------SCCC-CEEEEEEEECCCTTCCBCSCSEEEEEEEC-C
T ss_pred EE--EEEEEeCCC-------------------------------CccC-cEEEEEEEeCCCCCcEECCCceEEEEEec-c
Confidence 12 444443310 0000 001122222211 11 2233356677776 5
Q ss_pred CCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec
Q psy4200 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT 201 (388)
Q Consensus 155 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~ 201 (388)
|.+|.|.-..-..+|.|+. |.....|.-+..-.+ ...+.|....
T Consensus 120 D~~g~~~f~~~~~~V~E~~--g~~~~~V~Rs~~~~g-~vtV~~~T~d 163 (298)
T 3rb5_A 120 DHAGIFAFTDSVFEITESV--GRFELKVMRYSGARG-TVIVPYWTEN 163 (298)
T ss_dssp CCCCEEECSCSEEEECTTC--CCEEEEEEEESCCCS-CEEEEEEEEE
T ss_pred ccccccccccccEEeecCC--ceEEEEEEEEecCCC-CEEEEEEecC
Confidence 7789887655567899985 655566655433222 2356776553
No 69
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A
Probab=33.91 E-value=2e+02 Score=25.22 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=30.4
Q ss_pred EEEEEEEeCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCc
Q psy4200 322 TLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEY 382 (388)
Q Consensus 322 ~v~I~V~dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~ 382 (388)
..+|+|+| ||++|.|.-..-...|.|+. |+...+|.-+-. ..+.-.+.|+..++.
T Consensus 129 ~atVtI~D-dD~agv~sf~~~~~~V~E~~--G~~~v~V~Rs~~---~~g~VtV~y~T~~GT 183 (295)
T 3us9_A 129 TATVTIFD-DDHAGIFTFEEPVTHVSESI--GIMEVKVLRTSG---ARGNVIVPYKTIEGT 183 (295)
T ss_dssp EEEEEEEC-CCCCCEEEESCSEEEEESCS--SEEEEEEEEESC---CCSCEEEEEEEECCS
T ss_pred eeEEEEcc-cccccccccCCCeEEEecCC--CeEEEEEEEEcC---CCccEEEEEEecCCC
Confidence 44555666 57788765444456778874 555545544322 223333677766543
No 70
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=30.55 E-value=1.8e+02 Score=22.10 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec
Q psy4200 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT 201 (388)
Q Consensus 155 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~ 201 (388)
|+++.+.-..-..+|.|+. |+....|.-.. +......+.|....
T Consensus 2 d~~~~i~F~~~~y~V~E~~--g~~~v~V~R~g-~~~~~v~V~y~t~~ 45 (137)
T 3ead_A 2 DDPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQD 45 (137)
T ss_dssp ---CEEEESSCEEEEEGGG--CEEEEEEEEES-CCSSCEEEEEEEEC
T ss_pred CCCEEEEEcCCEEEEECCC--eEEEEEEEEEC-CCCceEEEEEEeEC
Confidence 4455554445556888874 55545554443 33334578888764
No 71
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=26.47 E-value=3.2e+02 Score=27.33 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=44.5
Q ss_pred EEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEE
Q psy4200 178 VVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257 (388)
Q Consensus 178 ~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~ 257 (388)
.-..+.|.+-..+.+-+..|+|.+-...|-... .... +.|..++ .+.|+|.|+|++. +|.. ....
T Consensus 709 ~~i~fs~l~y~~~~~~~y~YrL~G~d~~W~~~~-~~~~------~~ytnL~--pG~Y~f~V~a~n~-~g~w-----~~~~ 773 (795)
T 4a2l_A 709 FSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLT-DSRT------VSYSNLP--QGTYQFLVKAANS-DGKW-----NPIP 773 (795)
T ss_dssp EEEEEEECCTTTTTCCEEEEEEETTCSSCEEES-SCCE------EEEECCC--SEEEEEEEEEECT-TSCB-----CSSC
T ss_pred EEEEEEEccCCCccccEEEEEEeCCCCCccCCC-CcCe------EEecccC--CCeEEEEEEEECC-CCcc-----CCCc
Confidence 334556655555555678899986445565552 1222 3333444 5689999999974 3432 1224
Q ss_pred EEEEEEEcccCCCCCccCC
Q psy4200 258 AQVTVTILDVNDSPPVFNR 276 (388)
Q Consensus 258 ~~v~I~V~dvNd~~P~f~~ 276 (388)
+.+.|.|. ||.+..
T Consensus 774 ~~l~i~I~-----Ppww~t 787 (795)
T 4a2l_A 774 TALEIIVL-----PIWYKT 787 (795)
T ss_dssp EEEEEEEC-----CCC---
T ss_pred eEEEEEEE-----CCcccC
Confidence 56777774 666643
No 72
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=24.78 E-value=1.8e+02 Score=28.95 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=43.9
Q ss_pred EEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEE
Q psy4200 180 LRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQ 259 (388)
Q Consensus 180 ~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~ 259 (388)
..+.|.+--.+...+..|+|.+-...|.........+ .|-.++ .+.|+|.|+|++. +|.+ ....+.
T Consensus 676 i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~------~ytnL~--pG~Y~f~V~a~~~-~g~w-----~~~~~~ 741 (758)
T 3ott_A 676 FELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRI------TYSNLS--YGNYQLIISKLER-DGQP-----SNRPHI 741 (758)
T ss_dssp EEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEE------EECSCC--SEEEEEEEEEBCT-TSCB-----CSSCEE
T ss_pred EEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceE------EecCCC--CccEEEEEEEeCC-CCCc-----cCccEE
Confidence 4455555444445577888876444555443222233 233333 5679999999974 4443 123456
Q ss_pred EEEEEcccCCCCCccC
Q psy4200 260 VTVTILDVNDSPPVFN 275 (388)
Q Consensus 260 v~I~V~dvNd~~P~f~ 275 (388)
+.|+|. ||+..
T Consensus 742 l~I~I~-----Pp~~~ 752 (758)
T 3ott_A 742 LNIRIL-----PPWLE 752 (758)
T ss_dssp EEEEEC-----CGGGG
T ss_pred EEEEEC-----Ccchh
Confidence 777775 66654
No 73
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*
Probab=23.51 E-value=84 Score=24.60 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEECCCCCeEEEEEecCCcEE--EeCCeeEEEEc
Q psy4200 32 STLEGVDPEGSKVKYGIYGTDRFS--LDRDSGELRVA 66 (388)
Q Consensus 32 ~~v~a~D~D~~~i~y~i~~~~~F~--Id~~tG~i~~~ 66 (388)
-++.+.|.++..++|++.+++.+. +...++.+++.
T Consensus 68 Erl~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~ 104 (157)
T 1tw0_A 68 QKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVV 104 (157)
T ss_dssp EEEEEEETTTTEEEEEEEECTTSCTTEEEEEEEEEEE
T ss_pred EEEEEEeccCCEEEEEEEecCCCccceEEEEEEEEEE
Confidence 355666777788888887765432 33334444443
No 74
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A
Probab=22.62 E-value=1.3e+02 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=23.6
Q ss_pred EEecCCCCCcEEEEEEEECCCCCeEEEEEecCCc
Q psy4200 20 VVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDR 53 (388)
Q Consensus 20 ~v~E~~~~gt~v~~v~a~D~D~~~i~y~i~~~~~ 53 (388)
++.+..+.+...-++.+.|.++..++|++.+++.
T Consensus 57 ~~~~g~~~~~~kErl~~iD~~~~~~~y~iiegd~ 90 (159)
T 4a8u_A 57 SFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGP 90 (159)
T ss_dssp ECCTTSSCSEEEEEEEEEETTTTEEEEEEEEETT
T ss_pred EEecCCCccEEEEEEEEEccccCEEEEEEeeCCC
Confidence 3444444455666788888888999999986543
No 75
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A
Probab=22.51 E-value=1.4e+02 Score=23.48 Aligned_cols=60 Identities=22% Similarity=0.081 Sum_probs=26.8
Q ss_pred EEEEEEEEEEeCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCce
Q psy4200 319 SSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYG 383 (388)
Q Consensus 319 ~~~~v~I~V~dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~ 383 (388)
.++.+.+.|.| ||..+.|.-..-..+|.|+. |+.-.+|.-.-.+.+.. ..+.|+..++.+
T Consensus 8 ~~~~~~~~i~d-dd~~g~i~F~~~~y~V~E~~--G~v~vtV~R~~G~~~~~--v~V~y~T~dGTA 67 (160)
T 3gin_A 8 HSAALEVLFQG-PGPVSKIFFEQGTYQCLENC--GTVALTIIRRGGDLTNT--VFVDFRTEDGTA 67 (160)
T ss_dssp --------------CEEEEEESCSEEEEETTS--SEEEEEEEEESSCTTSC--EEEEEEEEESSS
T ss_pred ccceEEEEEec-CCCccEEEEeCCEEEEEcCc--EEEEEEEEEccCCCCcE--EEEEEEEECCcc
Confidence 45567777777 34466665555556788875 55545554443443222 348898876543
No 76
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=21.70 E-value=1.9e+02 Score=20.91 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=35.6
Q ss_pred cCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCCCeEEEEEecCCcEEEeCCeeEEEEcccCCCcccceeeEEEEE
Q psy4200 4 YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVL 83 (388)
Q Consensus 4 ~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~i~y~i~~~~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v 83 (388)
..|.+|+|.-.. . +.|......... ..++|.|..++.|+ ..|.+....|..+...|. ++.
T Consensus 6 ~~~~~P~It~~~-d-~tI~~Gd~fd~~-~gvtA~D~~DGDlT---------------~~I~V~g~Vdt~k~G~Y~--VtY 65 (103)
T 2kpn_A 6 TSDLEPKLTVPV-G-ATIHVGDSFVPM-AEVLAIDKEDGDLT---------------SKIKVDGEVDTTKAGTYV--LTY 65 (103)
T ss_dssp CCCCCCEEECCS-E-EEEETTCCCCHH-HHCEEECSSSCBCG---------------GGCEEESCCCSSSCEEEE--EEE
T ss_pred cCCCCCEEEeCC-C-EEEECCCCcccc-cCcEEEcCCCCCcc---------------eeEEEeCcccCCCceEEE--EEE
Confidence 457788887643 2 455544332211 13578876554432 122333456766777888 777
Q ss_pred EEEe
Q psy4200 84 TLEG 87 (388)
Q Consensus 84 ~a~D 87 (388)
++.|
T Consensus 66 ~VtD 69 (103)
T 2kpn_A 66 TVTD 69 (103)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7777
Done!