RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4200
(388 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers.
Length = 98
Score = 85.4 bits (212), Expect = 1e-20
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 11/107 (10%)
Query: 164 SFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPL 222
S+ + E+AP G+VVL V A D D + + Y +++ N D F ID +TGE+ TAKPL
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVND 269
DRE +LTV A + G P ++ A VT+T+LDVND
Sbjct: 61 DRE----EQSSYTLTVTATDG--GGP----PLSSTATVTITVLDVND 97
Score = 53.1 bits (128), Expect = 5e-09
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 21 VEENTPPGTIVSTLEGVDP---EGSKVKYGIYGTD---RFSLDRDSGELRVAQPLDREYN 74
V EN PPGT+V T+ DP E +V Y I + FS+D +GE+ A+PLDRE
Sbjct: 6 VPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDRE-- 63
Query: 75 STNTSTIVLTLEGVDPEG 92
S+ LT+ D G
Sbjct: 64 --EQSSYTLTVTATDGGG 79
Score = 39.2 bits (92), Expect = 4e-04
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 80 TIVLTLEGVDP---EGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYREDGHHTSKTNV 133
T+VLT+ DP E +V Y I + FS+D +GE+ A+PL RE+ + T V
Sbjct: 14 TVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDREEQSSYTLT-V 72
Query: 134 DIRDGH---HTSKTNVDIRVGDV 153
DG +S V I V DV
Sbjct: 73 TATDGGGPPLSSTATVTITVLDV 95
Score = 36.1 bits (84), Expect = 0.004
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 342 YTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
Y +V E A GT + T++A D D G+ G + Y ++
Sbjct: 2 YEVSVPENAPPGTVVLTVSATDPDSGENGE--VTYSIVSG 39
Score = 30.7 bits (70), Expect = 0.28
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 317 LSSSATLIVQVTDVNDN 333
LSS+AT+ + V DVNDN
Sbjct: 82 LSSTATVTITVLDVNDN 98
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 70.0 bits (172), Expect = 3e-15
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Query: 165 FSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKPLD 223
+S + E+AP+G+ VL V A D DL I+Y +L P +F ID +TG+L T KPLD
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60
Query: 224 REILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTIL 265
RE + G LTV A + G PL ++ VT+T+L
Sbjct: 61 RE----SIGEYELTVLATDS-GGPPL-----SSTTTVTITVL 92
Score = 47.3 bits (113), Expect = 4e-07
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 21 VEENTPPGTIVSTLEGVDPEG---SKVKYGIYGTDR---FSLDRDSGELRVAQPLDREYN 74
V EN P GT V T+ D + ++ Y I G F +D D+G+L +PLDRE
Sbjct: 5 VPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRESI 64
Query: 75 STNTSTIVLTLEGVDP 90
T++ T G P
Sbjct: 65 GEYELTVLATDSGGPP 80
Score = 33.8 bits (78), Expect = 0.023
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 342 YTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLG 380
Y+ +V E A GT + T+TA D+D G G I Y +LG
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGP--NGRIFYSILG 37
Score = 31.9 bits (73), Expect = 0.095
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 78 TSTIVLTLEGVDPEG---SKVKYGIYGT---DWFSLDRDSGELRVAQPLYRE 123
T VLT+ D + ++ Y I G WF +D D+G+L +PL RE
Sbjct: 11 VGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRE 62
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 63.9 bits (156), Expect = 4e-13
Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 184 AKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRARE 242
A D D + + Y +L+ N D F ID TGE+ T KPLDRE +LTV A +
Sbjct: 2 ATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDRE----EQPEYTLTVEATD 57
Query: 243 MVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
G PL ++ A VT+T+LDVND+ P
Sbjct: 58 G-GGPPL-----SSTATVTITVLDVNDNAP 81
Score = 34.6 bits (80), Expect = 0.010
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 89 DPEGSKVKYGI---YGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGH---HTS 142
E KV Y I FS+D ++GE+ +PL RE+ + T V+ DG +S
Sbjct: 7 SGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLT-VEATDGGGPPLSS 65
Query: 143 KTNVDIRVGDVQNTPP 158
V I V DV + P
Sbjct: 66 TATVTITVLDVNDNAP 81
Score = 34.2 bits (79), Expect = 0.012
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 38 DPEGSKVKYGI---YGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVD 89
E KV Y I FS+D ++GE+ +PLDRE LT+E D
Sbjct: 7 SGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDRE----EQPEYTLTVEATD 57
Score = 31.6 bits (72), Expect = 0.13
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 317 LSSSATLIVQVTDVNDNVP 335
LSS+AT+ + V DVNDN P
Sbjct: 63 LSSTATVTITVLDVNDNAP 81
>gnl|CDD|203892 pfam08266, Cadherin_2, Cadherin-like. This cadherin domain is
usually the most N-terminal copy of the domain.
Length = 84
Score = 30.9 bits (71), Expect = 0.18
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 20 VVEENTPPGTIVSTLE---GVDP-EGSKVKYGI---YGTDRFSLDRDSGELRVAQPLDRE 72
V EE T PG+ V L G++ E + I F L+ ++G+L V + +DRE
Sbjct: 7 VPEE-TEPGSFVGNLAKDLGLNVQELAARGARIVSGGNKQYFQLNPETGDLLVNERIDRE 65
Score = 27.1 bits (61), Expect = 4.7
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 28/78 (35%)
Query: 169 IMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDE---------------FFLIDSNT 213
+ E GS V G+LA+ DL N E +F ++ T
Sbjct: 7 VPEETEPGSFV-------GNLAK------DLGLNVQELAARGARIVSGGNKQYFQLNPET 53
Query: 214 GELKTAKPLDREILGGTN 231
G+L + +DRE L G++
Sbjct: 54 GDLLVNERIDREELCGSS 71
>gnl|CDD|216227 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.
Members of this family belong to glycosyl transferase
family 20. OtsA (Trehalose-6-phosphate synthase) is
homologous to regions in the subunits of yeast
trehalose-6-phosphate synthase/phosphate complex.
Length = 470
Score = 29.6 bits (67), Expect = 2.9
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 4 YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGEL 63
P + + G +VS L G+ V G G +D D +
Sbjct: 7 SNRLPVTAKREEEGKWEFSIKMSSGGLVSALNGLSEATEGVWVGWPGV---PVDEDEPKD 63
Query: 64 RVAQPLDREYNST 76
RV+Q L ++
Sbjct: 64 RVSQLLKEKFTCV 76
>gnl|CDD|185375 PRK15478, cbiH, cobalt-precorrin-3B C(17)-methyltransferase;
Provisional.
Length = 241
Score = 28.3 bits (63), Expect = 6.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 347 LETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI 384
+E AQAG ++ I++ D G YG G+V EL+ + +
Sbjct: 64 IELAQAGHNVALISS--GDAGIYGMAGLVLELVSKQKL 99
>gnl|CDD|234102 TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase,
methanol/ethanol family. This protein family has a
phylogenetic distribution very similar to that coenzyme
PQQ biosynthesis enzymes, as shown by partial
phylogenetic profiling. Genes in this family often are
found adjacent to the PQQ biosynthesis genes themselves.
An unusual, strained disulfide bond between adjacent Cys
residues contributes to PQQ-binding, as does a Trp
residue that is part of a PQQ enzyme repeat (see
pfam01011). Characterized members include the
dehydrogenase subunit of a membrane-anchored, three
subunit alcohol (ethanol) dehydrogenase of Gluconobacter
suboxydans, a homodimeric ethanol dehydrogenase in
Pseudomonas aeruginosa, and the large subunit of an
alpha2/beta2 heterotetrameric methanol dehydrogenase in
Methylobacterium extorquens.
Length = 526
Score = 28.4 bits (64), Expect = 6.9
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 20/97 (20%)
Query: 199 LLTNPDE---FFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQAT 255
LL + D F+++D G+L +A+P ++ T GV + G+P++ +A
Sbjct: 317 LLAHADRNGFFYVLDRTNGKLLSAEPFVDKVNWAT-GVD--------LKTGRPIEVPEAR 367
Query: 256 AFAQVTVTILDV--------NDSPPVFNRKEYVVHIP 284
+ ++V N P ++ K + ++P
Sbjct: 368 STGAKKGKPVEVCPGFLGGKNWQPMAYSPKTGLFYVP 404
>gnl|CDD|227908 COG5621, COG5621, Predicted secreted hydrolase [General function
prediction only].
Length = 354
Score = 28.3 bits (63), Expect = 7.4
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 42 SKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYG 101
S +Y + GT S+D ++ E+ LD E+ S + + E G
Sbjct: 199 SLPRYEVSGT--VSVDGETFEVTGLAWLDHEWGS----------QPLASEQV-------G 239
Query: 102 TDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRV 150
DWFSL SGE + L + DG + S N DG + D+++
Sbjct: 240 WDWFSLHLASGEKLMLFRLRQADGRYVS-GNWISADGKVSPLEPTDVQL 287
>gnl|CDD|179953 PRK05174, PRK05174, 3-hydroxydecanoyl-(acyl carrier protein)
dehydratase; Validated.
Length = 172
Score = 27.5 bits (62), Expect = 8.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 359 ITALDSDGGDYGTGGIVYEL 378
IT + GG++G G IV EL
Sbjct: 40 ITEISETGGEFGKGYIVAEL 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.134 0.377
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,003,135
Number of extensions: 1960826
Number of successful extensions: 1146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 35
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (26.9 bits)