RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4200
(388 letters)
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 164 bits (418), Expect = 5e-46
Identities = 86/371 (23%), Positives = 134/371 (36%), Gaps = 83/371 (22%)
Query: 80 TIVLTLEGVDP---EGSKVKYGIYG-------TDWFSLDRDSGELRVAQPLYRE--DGHH 127
L + + +KV Y I G F ++R++G L+V QPL RE +
Sbjct: 16 EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI 75
Query: 128 TSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDG 187
V + I V D + P F F G + E A G+ V++V A D
Sbjct: 76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDA 135
Query: 188 DLAQPRS---IYYDLLTN-----PDEFFLIDSNTGELKTAK-PLDREILGGTNGVISLTV 238
D I Y +++ F ++ +TG + LDRE + +L V
Sbjct: 136 DDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRE----SYPTYTLVV 191
Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL----P 294
+A ++ G+ L + A+ +T+ D+ND+ PVFN Y +PE+ + +
Sbjct: 192 QAADL-QGEGL-----STTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVT 245
Query: 295 DLD---------------------MIVTDSD---------------------LVIA---E 309
D D ++VTD L + E
Sbjct: 246 DDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENE 305
Query: 310 ETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDY 369
E + S+AT+ V V DVN+ P F V E G IT+ TA + D
Sbjct: 306 EPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFM- 363
Query: 370 GTGGIVYELLG 380
I Y +
Sbjct: 364 -DQKITYRIWR 373
Score = 158 bits (402), Expect = 8e-44
Identities = 96/440 (21%), Positives = 152/440 (34%), Gaps = 131/440 (29%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTL------EGVDPEGSKVKYGIY-------GTDRF 54
P FT +V V E PGT V + + V+ + + Y I + F
Sbjct: 105 RPEFTQEVFE-GSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMF 163
Query: 55 SLDRDSGELRVAQ-PLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGE 113
+++RD+G + V LDRE + T L ++ D +G
Sbjct: 164 TVNRDTGVISVLTSGLDRE----SYPTYTLVVQAADLQG--------------------- 198
Query: 114 LRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESA 173
+ L ++ I V D+ + P+F S++ G++ E+
Sbjct: 199 ----EGL--------------------STTAKAVITVKDINDNAPVFNPSTYQGQVPENE 234
Query: 174 PIGSVVLRVEAKDGDLAQ--PRSIYYDLLTNPDEFFLI----DSNTGELKTAKPLDREIL 227
+ + ++ D D Y ++ +PD+ F++ +N G LKTAK LD E
Sbjct: 235 V-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFE-- 291
Query: 228 GGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDI 287
L VR + +P + + A VTV ++DVN+ P+F E V +PED
Sbjct: 292 --AKQQYILHVRVE---NEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDF 345
Query: 288 PDGSLL-------PDLDM-------IVTDSD--LVIAEET-------------------- 311
G + PD M I D+ L I ET
Sbjct: 346 GVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNS 405
Query: 312 -HTAE---------KLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITA 361
+ A + + TL++ + DVNDN P E + IT
Sbjct: 406 TYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQ--FCQRNPQPH---IITI 460
Query: 362 LDSDGGDYGTGGIVYELLGE 381
LD D EL
Sbjct: 461 LDPDLPPNT-SPFTAELTHG 479
Score = 139 bits (353), Expect = 7e-37
Identities = 65/384 (16%), Positives = 106/384 (27%), Gaps = 104/384 (27%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-EG----SKVKYGIYG--TDRFSLDRDS 60
P F V EN ++TL+ D K Y + +F + D
Sbjct: 218 APVFNPSTYQ-GQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDP 275
Query: 61 ----GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRV 116
G L+ A+ LD E +L + + E
Sbjct: 276 TTNDGILKTAKGLDFE----AKQQYILHVRVENEEP------------------------ 307
Query: 117 AQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIG 176
S V + V DV N PIF+ + E+ E +G
Sbjct: 308 ------------------FEGSLVPSTATVTVDVVDV-NEAPIFMPAERRVEVPEDFGVG 348
Query: 177 SVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDRE-ILGGTNGVIS 235
+ A++ D + I Y + + + I+ TG + T +DRE N
Sbjct: 349 QEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYV 408
Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIP------- 288
+ A + DG P AT + + +LDVND+ P+ + P
Sbjct: 409 ALIIATD--DGSP----IATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHIITILD 462
Query: 289 -DG---------SLLPDLDM-----IVTDSDLVIAEETHTAEK---------------LS 318
D L + + + + +
Sbjct: 463 PDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKD 522
Query: 319 SSATLIVQVTDVNDNVPSFELNAY 342
TL V V D V + +
Sbjct: 523 QVTTLDVHVCDCEGTVNNCMKAHH 546
Score = 92.4 bits (230), Expect = 2e-20
Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 30/185 (16%)
Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
E+ G + + + ++Y + P F+I+ TG LK +PL
Sbjct: 8 SCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
DRE L A +G+ + ++ +T+ D ND+ P F ++ +
Sbjct: 67 DRE----AIAKYILYSHAVSS-NGEAV-----EDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 283 IPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATL---IVQVTDVNDNVPSFEL 339
+ E G+ + + + TD+D ++ +T +A + IV + F +
Sbjct: 117 VAEGAVPGTSV--MKVSATDAD----DDVNT-----YNAAIAYTIVSQDPELPHKNMFTV 165
Query: 340 NAYTG 344
N TG
Sbjct: 166 NRDTG 170
Score = 86.2 bits (214), Expect = 2e-18
Identities = 40/287 (13%), Positives = 77/287 (26%), Gaps = 74/287 (25%)
Query: 6 NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG---SKVKYGIYGTDR--FSLDRDS 60
N P F + V E+ G +++ +P+ K+ Y I+ ++ ++
Sbjct: 327 NEAPIFMPAERR-VEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPET 385
Query: 61 GELRVAQPLDRE-YNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQP 119
G + +DRE ST V + D G
Sbjct: 386 GAIFTRAEMDREDAEHVKNSTYVALIIA---------------------TDDGS----PI 420
Query: 120 LYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVV 179
T + + + DV + PI + + + P +
Sbjct: 421 A--------------------TGTGTLLLVLLDVNDNAPIPEPRNM--QFCQRNPQPHI- 457
Query: 180 LRVEAKDGDLAQPRS-IYYDLLTNPDEFFLIDSN--TGELKTAKPLDREILGGTNGVISL 236
+ D DL S +L + I+ N E +P G +
Sbjct: 458 --ITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDL----EIGEYKI 511
Query: 237 TVRAREMVD-GKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
++ D Q + V + D + + + H
Sbjct: 512 HLKLA---DNQNKDQV------TTLDVHVCDCEGTVNNCMKAHHHHH 549
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 159 bits (405), Expect = 3e-45
Identities = 80/417 (19%), Positives = 133/417 (31%), Gaps = 107/417 (25%)
Query: 21 VEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTST 80
V P + + D T
Sbjct: 4 VTRAVRPTKRIEFT----------------------EADGD--------------TE-GK 26
Query: 81 IVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRE--------DGHHTSKTN 132
V LE + + + I + + +G +RV + E D
Sbjct: 27 SVFQLEKETDKET---FKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 83
Query: 133 VDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSF--SGEIMESAPIGSVVLRVEAKDGDLA 190
+T V I V DV + PP FIN + +AP + V ++A+D D
Sbjct: 84 GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD-- 141
Query: 191 QPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVD-GKP 248
+I+Y ++ F +D +G ++T + + L V+A D
Sbjct: 142 TDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQ----LDMEYVLYVKAE---DQNGK 194
Query: 249 LQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDG------------------ 290
+ + + + + ++I+ P F Y IPE+
Sbjct: 195 VDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRY 253
Query: 291 ------------SLLPDLDMIVTDSDL---VIAEETH-----TAE----KLSSSATLIVQ 326
++ P ++ +L + + TA S+S L ++
Sbjct: 254 TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIR 313
Query: 327 VTDVNDNVPSFELNAYTG-NVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEY 382
VTDVNDN P FEL Y NV E GTSI + A+DSD G I Y + ++
Sbjct: 314 VTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAE--IEYLVSDDH 368
Score = 143 bits (363), Expect = 4e-39
Identities = 68/305 (22%), Positives = 101/305 (33%), Gaps = 65/305 (21%)
Query: 8 PPSFTTDVNSPLV-VEENTPPGTIVSTLEGVDP-EGSKVKYGIY---GTDRFSLDRDSGE 62
PP F V+ N PP T V TL+ DP + Y I RF +D SG
Sbjct: 108 PPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGV 167
Query: 63 LRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYR 122
+R + VL ++ D +
Sbjct: 168 VRTRGTDLFQ----LDMEYVLYVKA---------------------EDQNGKVDDRRF-- 200
Query: 123 EDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRV 182
S + + + P F S+ EI E+ S ++ +
Sbjct: 201 ------------------QSTPEERLSIVGGKR-APQFYMPSYEAEIPENQKKDSDIISI 241
Query: 183 EAKDGDLAQPR-SIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAR 241
+AK + R ++ F I +G +K AK LD E L V SL V A
Sbjct: 242 KAKSFADREIRYTLKAQG--QGAGTFNIGPTSGIVKLAKELDFEDL-RQPHVYSLIVTAT 298
Query: 242 EMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH-IPEDIPDGSLLPDLDMIV 300
+ +T+ + DVND+ P F +Y H + EDIP G+ + L +
Sbjct: 299 ---EDSGGFSTSVD----LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSI--LRVKA 349
Query: 301 TDSDL 305
DSD
Sbjct: 350 MDSDS 354
Score = 103 bits (258), Expect = 1e-24
Identities = 38/258 (14%), Positives = 70/258 (27%), Gaps = 63/258 (24%)
Query: 166 SGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLID--------SNTGEL 216
S + + R+E + D + L E F I G +
Sbjct: 1 SRRVTRAVR---PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAV 57
Query: 217 KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNR 276
+ K D E LG + + + + T +V + + DVND PP F
Sbjct: 58 RVKKKWDYEELGPEKTIDFWVIITNMGHNAGI----KYTDNQRVIILVKDVNDEPPYFIN 113
Query: 277 KE--YVVHIPEDIPDGSLL-----PDLD-------------------------MIVTDSD 304
+ + + P + + D D ++ T
Sbjct: 114 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGT 173
Query: 305 L-----------VIAE---ETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETA 350
V AE + S+ + + P F + +Y + E
Sbjct: 174 DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQ 232
Query: 351 QAGTSITTITALDSDGGD 368
+ + I +I A +
Sbjct: 233 KKDSDIISIKAKSFADRE 250
Score = 85.8 bits (213), Expect = 1e-18
Identities = 51/267 (19%), Positives = 89/267 (33%), Gaps = 72/267 (26%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIY----GTDRFSLDRDSGEL 63
P F + EN + + +++ +++Y + G F++ SG +
Sbjct: 216 APQFYMPSYE-AEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIV 274
Query: 64 RVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRE 123
++A+ LD E Y +
Sbjct: 275 KLAKELDFEDLR-----------------QPHVYSL------------------------ 293
Query: 124 DGHHTSKTNVDIRDGH--HTSKTNVDIRVGDVQNTPPIFINSSFSG-EIMESAPIGSVVL 180
V + ++ ++ IRV DV + P F + + E P+G+ +L
Sbjct: 294 --------IVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345
Query: 181 RVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA 240
RV+A D D I Y + D+ F +DS G + K LD + N V A
Sbjct: 346 RVKAMDSDSGSNAEIEYLVS---DDHFAVDS-NGIIVNNKQLDADNN---NAYYEFIVTA 398
Query: 241 REMVD-GKPLQEDQATAFAQVTVTILD 266
+ D G+P + AT V V +
Sbjct: 399 K---DKGEPPKSGVAT----VRVYTKN 418
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 160 bits (407), Expect = 2e-44
Identities = 89/425 (20%), Positives = 134/425 (31%), Gaps = 127/425 (29%)
Query: 21 VEENTPPGTIVSTLEGVDPEGSKVKYGIYG-------TDRFSLDRDSGELRVAQPLDREY 73
E P + ++ +KV Y I G F ++ ++G + V +PLDRE
Sbjct: 17 ENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE- 75
Query: 74 NSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNV 133
VL+ V GS V
Sbjct: 76 ---EYDKYVLSSHAVSENGSPV-------------------------------------- 94
Query: 134 DIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPR 193
+ I V D + P F F G + E G+ V+ V A D D
Sbjct: 95 -------EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 147
Query: 194 S---IYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMV 244
+ Y +L F I+ TG + LDRE +LTV+A ++
Sbjct: 148 LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDRE----KFPEYTLTVQATDL- 202
Query: 245 DGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL----PDLDM-- 298
+G L + + + I D ND+ P+F+ K Y +PE+ + DLDM
Sbjct: 203 EGAGL-----SVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPG 257
Query: 299 -------------------IVTDSD---------------------LVIA---EETHTAE 315
I TD + L I E +
Sbjct: 258 TPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVP 317
Query: 316 KLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIV 375
+S+AT+ V V DVN+ P F +V E G I ++ A D D +
Sbjct: 318 LPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ--IQKLS 374
Query: 376 YELLG 380
Y +
Sbjct: 375 YFIGN 379
Score = 153 bits (389), Expect = 6e-42
Identities = 86/426 (20%), Positives = 133/426 (31%), Gaps = 129/426 (30%)
Query: 21 VEENTPPGTIVSTL------EGVDPEGSKVKYGIYG-------TDRFSLDRDSGELRVA- 66
V E PGT V + + +D + Y I + F+++R++G + +
Sbjct: 123 VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG 182
Query: 67 QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGH 126
LDRE LT++ D EG L
Sbjct: 183 TGLDRE----KFPEYTLTVQATDLEG-------------------------AGL------ 207
Query: 127 HTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKD 186
+ + I++ D + PIF +++ + E+ G V R+ D
Sbjct: 208 --------------SVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTD 252
Query: 187 GDLAQPRS--IYYDLLTNPDEFFLI----DSNTGELKTAKPLDREILGGTNGVISLTVRA 240
D+ + Y + N FF I +SN G L TAK LD E L +
Sbjct: 253 LDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE----LRKQYVLQITV 308
Query: 241 REMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL------- 293
+ +P T+ A VTVT+ DVN+ P F V + ED+ G +
Sbjct: 309 E---NAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 364
Query: 294 PDLDM-------IVTDSD--LVIAEET---HTAEKL------------------------ 317
PD I D L + ++ L
Sbjct: 365 PDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVS 424
Query: 318 --SSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIV 375
+ + TLI+ V DVNDN P +T +T D+D
Sbjct: 425 VGTGTGTLILHVLDVNDNGPVPSPRVFTMCD-----QNPEPQVLTISDADIPPNT-YPYK 478
Query: 376 YELLGE 381
L
Sbjct: 479 VSLSHG 484
Score = 134 bits (340), Expect = 4e-35
Identities = 64/378 (16%), Positives = 107/378 (28%), Gaps = 102/378 (26%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-----EGSKVKYGIYGTDR--FSLDRD- 59
P F + +V EN G V L D + Y I + F++ D
Sbjct: 224 APIFDPKTYT-ALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDP 281
Query: 60 ---SGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRV 116
G L A+ LD E VL + + E
Sbjct: 282 ESNQGILTTAKGLDFE----LRKQYVLQITVENAEP------------------------ 313
Query: 117 AQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIG 176
TS V + V DV N P F+ + ++ E G
Sbjct: 314 ------------------FSVPLPTSTATVTVTVEDV-NEAPFFVPAVSRVDVSEDLSRG 354
Query: 177 SVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISL 236
++ + A+D D Q + + Y + +P + ++ + G + LDRE N ++
Sbjct: 355 EKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTV 414
Query: 237 TVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIP-------- 288
+ + DG T + + +LDVND+ PV + + + + P
Sbjct: 415 IMLVTD--DGVS----VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTISDA 468
Query: 289 DG---------SLLPDLD---MIVTDSDLVIAEETHTAEK----------------LSSS 320
D SL D DS + T +
Sbjct: 469 DIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL 528
Query: 321 ATLIVQVTDVNDNVPSFE 338
+ V +
Sbjct: 529 TVVNATVCSCEGKAIKCQ 546
Score = 93.1 bits (232), Expect = 8e-21
Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 32/195 (16%)
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSN 212
++ E P ++++ + + +YY + P F I+
Sbjct: 6 HDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWE 62
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
TG + +PLDRE L+ A +G P+ ++T+ ++D ND+ P
Sbjct: 63 TGWMLVTRPLDRE----EYDKYVLSSHAVSE-NGSPV-----EEPMEITINVIDQNDNRP 112
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATL---IVQVTD 329
F + + + E + G+ + + + TD D + + + L I++
Sbjct: 113 KFTQDVFRGSVREGVQPGTQV--MAVSATDED----DNIDS-----LNGVLSYSILKQDP 161
Query: 330 VNDNVPSFELNAYTG 344
F +N TG
Sbjct: 162 EEPIPNLFTINRETG 176
Score = 75.8 bits (187), Expect = 4e-15
Identities = 42/275 (15%), Positives = 70/275 (25%), Gaps = 68/275 (24%)
Query: 6 NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG---SKVKYGIYG--TDRFSLDRDS 60
N P F V+ + V E+ G + +L DP+ K+ Y I ++++D+
Sbjct: 333 NEAPFFVPAVSR-VDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 391
Query: 61 GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPL 120
G + LDRE +T + + D G
Sbjct: 392 GIVTGNGNLDRESEYVKNNTYTVIMLV---------------------TDDGV----SVG 426
Query: 121 YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVL 180
T + + V DV + P+ F+ P VL
Sbjct: 427 --------------------TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP---QVL 463
Query: 181 RVEAKDGDLAQPRSIYYDLLTNPDE-FFLIDSNTGELKTAKPLDREILGGTNGVISLTVR 239
+ D L D + + G P + G S+ V
Sbjct: 464 TISDADIPPNTYP-YKVSLSHGSDLTWKAELDSKGTSMLLSPTQQL----KKGDYSIYVL 518
Query: 240 AREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
+ Q V T+
Sbjct: 519 LSDA--QNNPQL------TVVNATVCSCEGKAIKC 545
Score = 59.6 bits (145), Expect = 7e-10
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 317 LSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVY 376
LS I+Q+TD NDN P F+ YT V E G + ++ D D VY
Sbjct: 207 LSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVY 265
Query: 377 ELLGEYG 383
++ G
Sbjct: 266 KIRVNEG 272
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 161 bits (408), Expect = 1e-43
Identities = 86/427 (20%), Positives = 133/427 (31%), Gaps = 127/427 (29%)
Query: 19 LVVEENTPPGTIVSTLEGVDPEGSKVKYGIYG-------TDRFSLDRDSGELRVAQPLDR 71
+ E P + ++ +KV Y I G F ++ ++G + V +PLDR
Sbjct: 164 VSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDR 223
Query: 72 EYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKT 131
E VL+ V GS V
Sbjct: 224 E----EYDKYVLSSHAVSENGSPV------------------------------------ 243
Query: 132 NVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ 191
+ I V D + P F F G + E G+ V+ V A D D
Sbjct: 244 ---------EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNI 294
Query: 192 PRS---IYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRARE 242
+ Y +L F I+ TG + LDRE +LTV+A +
Sbjct: 295 DSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDRE----KFPEYTLTVQATD 350
Query: 243 MVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL------PDL 296
+ +G L + + + I D ND+ P+F+ K Y +PE+ + D+
Sbjct: 351 L-EGAGL-----SVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDM 404
Query: 297 DM-------------------IVTDSD---------------------LVIA---EETHT 313
I TD + L I E +
Sbjct: 405 PGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFS 464
Query: 314 AEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGG 373
+S+AT+ V V DVN+ P F +V E G I ++ A D D
Sbjct: 465 VPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ--IQK 521
Query: 374 IVYELLG 380
+ Y +
Sbjct: 522 LSYFIGN 528
Score = 155 bits (393), Expect = 1e-41
Identities = 75/469 (15%), Positives = 138/469 (29%), Gaps = 123/469 (26%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTL------EGVDPEGSKVKYGIYG-------TDRF 54
P FT DV V E PGT V + + +D + Y I + F
Sbjct: 260 RPKFTQDVFR-GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLF 318
Query: 55 SLDRDSGELRVA-QPLDREYNS----------------TNTSTIVLTLEGV--------- 88
+++R++G + + LDRE + ++ +
Sbjct: 319 TINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 378
Query: 89 ---------DPEGSKV------------------KYGIYGTD--WFSLDRDS----GELR 115
+ G +V Y I + +F++ D G L
Sbjct: 379 KTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILT 438
Query: 116 VAQPLYREDGHHTSKTNVDIRDGH------HTSKTNVDIRVGDVQNTPPIFINSSFSGEI 169
A+ L E + + + TS V + V DV N P F+ + ++
Sbjct: 439 TAKGLDFELRKQYVLQ-ITVENAEPFSVPLPTSTATVTVTVEDV-NEAPFFVPAVSRVDV 496
Query: 170 MESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGG 229
E G ++ + A+D D Q + + Y + +P + ++ + G + LDRE
Sbjct: 497 SEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYV 556
Query: 230 TNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPD 289
N ++ + + DG T + + +LDVND+ PV + + + + P
Sbjct: 557 KNNTYTVIMLVTD--DGVS----VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ 610
Query: 290 G-----------------SLLPDLD---MIVTDSDLVIA---------EETHT------- 313
SL D DS + ++
Sbjct: 611 VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 670
Query: 314 AEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITAL 362
A+ + V + G L +
Sbjct: 671 AQNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVLALLI 719
Score = 127 bits (320), Expect = 4e-32
Identities = 71/441 (16%), Positives = 124/441 (28%), Gaps = 118/441 (26%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-EGSKVKYGIYGTDRFSLDRDSGELRVA 66
P F++ V G + + D Y + G RF + D G + V
Sbjct: 34 KPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDV-GDSRFRVLPD-GTVLVK 91
Query: 67 QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGH 126
+ + T+ D G K
Sbjct: 92 RHVKLH------KDTKFTISTWDARGIKHST----------------------------- 116
Query: 127 HTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIF-------INSSFSGEIMESAPIGSVV 179
+ + + R G + + V T + E P +
Sbjct: 117 NIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRL 176
Query: 180 LRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPLDREILGGTNGVI 234
+++ + + +YY + P F I+ TG + +PLDRE
Sbjct: 177 VQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE----EYDKY 229
Query: 235 SLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLP 294
L+ A +G P+ ++T+ ++D ND+ P F + + + E + G+ +
Sbjct: 230 VLSSHAVSE-NGSPV-----EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQV- 282
Query: 295 DLDMIVTDSD-------------LVIAEETHTAEKL---------------------SSS 320
+ + TD D ++ + L
Sbjct: 283 -MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE 341
Query: 321 ATLIVQVTD------------------VNDNVPSFELNAYTGNVLETAQAGTSITTITAL 362
TL VQ TD NDN P F+ YT V E G + ++
Sbjct: 342 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVT 400
Query: 363 DSDGGDYGTGGIVYELLGEYG 383
D D VY++ G
Sbjct: 401 DLDMPGTPAWQAVYKIRVNEG 421
Score = 103 bits (257), Expect = 7e-24
Identities = 47/313 (15%), Positives = 88/313 (28%), Gaps = 74/313 (23%)
Query: 130 KTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIME-SAPIGSVVLRVEAKDGD 188
+ G V DV P F ++ + + G + +V D
Sbjct: 7 RNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT 66
Query: 189 LAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILG----------GTNGVISLTV 238
+ YD+ D F + + G + + + G ++ V
Sbjct: 67 --TRKHGLYDV---GDSRFRVLPD-GTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAV 120
Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKE-------YVVHIPEDIPDGS 291
++ G+ + +L ++ RK+ V E P
Sbjct: 121 ASKRHRSGEEAHS------RSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPK 174
Query: 292 LL----PDLDM----------------------IVTDS-DLVIA-----EET-------- 311
L + D I ++ +++ EE
Sbjct: 175 RLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSH 234
Query: 312 ---HTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGD 368
+ + + V D NDN P F + + G+V E Q GT + ++A D D
Sbjct: 235 AVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNI 294
Query: 369 YGT-GGIVYELLG 380
G + Y +L
Sbjct: 295 DSLNGVLSYSILK 307
Score = 77.2 bits (190), Expect = 2e-15
Identities = 43/287 (14%), Positives = 72/287 (25%), Gaps = 70/287 (24%)
Query: 6 NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG---SKVKYGIYG--TDRFSLDRDS 60
N P F V+ + V E+ G + +L DP+ K+ Y I ++++D+
Sbjct: 482 NEAPFFVPAVSR-VDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 540
Query: 61 GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPL 120
G + LDRE +T + + L D G
Sbjct: 541 GIVTGNGNLDRESEYVKNNTYTVIM---------------------LVTDDGV----SVG 575
Query: 121 YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVL 180
T + + V DV + P+ F+ P
Sbjct: 576 --------------------TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV---- 611
Query: 181 RVEAKDGDLAQPRS-IYYDLLTNPDE-FFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238
+ D D+ L D + + G P + G S+ V
Sbjct: 612 -LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQL----KKGDYSIYV 666
Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPE 285
+ Q V T+ K
Sbjct: 667 LLSDA--QNNPQL------TVVNATVCSCEGKAIKCQEKLVGGFDLP 705
Score = 53.7 bits (129), Expect = 6e-08
Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 58/182 (31%)
Query: 255 TAFAQVTVTILDVNDSPPVFNRKEYVVHIPED---------------------------- 286
V DV+ P F+ EY+ +
Sbjct: 18 CLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGD 77
Query: 287 -----IPDGSLLP-----------------DLDMIVTDSDLVIAEETHTAEKLSSSATLI 324
+PDG++L D I +++ +A + H + + + S +
Sbjct: 78 SRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSK 137
Query: 325 VQVTDVNDNVPSF-----ELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELL 379
+ V + + V E + G + + S+ + + Y +
Sbjct: 138 LPVLTFPETHTGLKRKKRDWVIPPIKVSEN-ERGPFPKRLVQIKSNKDRFNK--VYYSIT 194
Query: 380 GE 381
G+
Sbjct: 195 GQ 196
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 158 bits (401), Expect = 1e-43
Identities = 94/428 (21%), Positives = 146/428 (34%), Gaps = 122/428 (28%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVD---PEG--SKVKYGIY-------GTDRFS 55
P F V + V E + PGT V T+ +D P ++Y I + F+
Sbjct: 105 RPEFLHQVWN-GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 56 LDRDSGELR-VAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGEL 114
++ ++G++ VA LDRE L ++ D EG+
Sbjct: 164 INNETGDIITVAAGLDRE----KVQQYTLIIQATDMEGNP-------------------- 199
Query: 115 RVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAP 174
++ I V DV + PP F +F GE+ E+
Sbjct: 200 ----------------------TYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV 237
Query: 175 IGSVVLRVEAKDGDL---AQPRSIYYDLLTNPDEFFLI----DSNTGELKTAKPLDREIL 227
+V + D D + Y +P F I +SN G + KP+D E
Sbjct: 238 -DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE-- 294
Query: 228 GGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDI 287
TN + LTV A V + + A V+VT++DVN+ P F ++ E +
Sbjct: 295 --TNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGL 351
Query: 288 PDGSLL-------PDLDM-------IVTDSD--LVIAEET---HTAEKL----------- 317
G++L PD M ++D L I T L
Sbjct: 352 HAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNI 411
Query: 318 ---------------SSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITAL 362
S + TL + + D+NDN P ++ ET + + ITAL
Sbjct: 412 YNATFLASDNGIPPMSGTGTLQIYLLDINDNAP--QVLPQEAETCETPEPNS--INITAL 467
Query: 363 DSDGGDYG 370
D D
Sbjct: 468 DYDIDPNA 475
Score = 157 bits (400), Expect = 2e-43
Identities = 90/376 (23%), Positives = 142/376 (37%), Gaps = 87/376 (23%)
Query: 80 TIVLTLEGVDP---EGSKVKYGIYG-------TDWFSLDRDSGELRVAQPLYRE--DGHH 127
L + + ++Y + G T F ++ SG+L V +PL RE H
Sbjct: 16 PFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH 75
Query: 128 TSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDG 187
VDI + ++ I V D+ + P F++ ++G + E + G+ V+ V A D
Sbjct: 76 LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135
Query: 188 DLAQPRS----IYYDLLTN-----PDEFFLIDSNTGELKTAK-PLDREILGGTNGVISLT 237
D P + + Y +L+ F I++ TG++ T LDRE +L
Sbjct: 136 D--DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE----KVQQYTLI 189
Query: 238 VRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLP--- 294
++A D + + A +T+ DVND+PP F + +PE+ D +
Sbjct: 190 IQAT---DMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTV 246
Query: 295 -DLDM----------------------IVTDSD-----LVIAEE-----------THTAE 315
D D I+TD + + + + T AE
Sbjct: 247 TDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAE 306
Query: 316 -----------KLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDS 364
S+AT+ V V DVN+N P F N E AGT +TT+TA D
Sbjct: 307 NQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDP 365
Query: 365 DGGDYGTGGIVYELLG 380
D I Y L
Sbjct: 366 DRYM--QQNIRYTKLS 379
Score = 134 bits (340), Expect = 4e-35
Identities = 69/355 (19%), Positives = 114/355 (32%), Gaps = 80/355 (22%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-----EGSKVKYGIYGTD---RFSLDRD 59
PP FT V EN IV+ L D Y I G D RF++ D
Sbjct: 220 PPEFTAMTFY-GEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTD 277
Query: 60 S----GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELR 115
G + V +P+D E VLT+ + L
Sbjct: 278 PNSNDGLVTVVKPIDFE----TNRMFVLTVAA---------------------ENQVPLA 312
Query: 116 VAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPI 175
S V + V DV N P F + E
Sbjct: 313 KGIQ------------------HPPQSTATVSVTVIDV-NENPYFAPNPKIIRQEEGLHA 353
Query: 176 GSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVIS 235
G+++ + A+D D ++I Y L++P + ID G++ T LDRE N + +
Sbjct: 354 GTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYN 413
Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPD 295
T A + +G P + + + +LD+ND+ P E S+
Sbjct: 414 ATFLASD--NGIP----PMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPEPNSIN-- 463
Query: 296 LDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETA 350
+ D D+ + + + ++ V ++ +N G+ +
Sbjct: 464 --ITALDYDI---------DPNAGPFAFDLPLSPVTIK-RNWTINRLNGDFAQLN 506
Score = 120 bits (302), Expect = 5e-30
Identities = 54/274 (19%), Positives = 93/274 (33%), Gaps = 77/274 (28%)
Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
+ E++ G + D + S+ Y + P F+I+ +G+L KPL
Sbjct: 8 NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
DRE L A ++ +G + + + ++D+ND+ P F + +
Sbjct: 67 DRE----LIARFHLRAHAVDI-NGNQV-----ENPIDIVINVIDMNDNRPEFLHQVWNGS 116
Query: 283 IPE----------------DIPDGS--------------------------------LLP 294
+PE D P+ +
Sbjct: 117 VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAA 176
Query: 295 DLD--------MIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNV 346
LD +I+ +D+ E + LS++AT ++ VTDVNDN P F + G V
Sbjct: 177 GLDREKVQQYTLIIQATDM----EGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEV 232
Query: 347 LETAQAGTSITTITALDSDGGDYGTGGIVYELLG 380
E + +T D D Y + G
Sbjct: 233 PENR-VDVIVANLTVTDKDQPHTPAWNAAYRISG 265
Score = 88.2 bits (219), Expect = 3e-19
Identities = 38/287 (13%), Positives = 84/287 (29%), Gaps = 70/287 (24%)
Query: 6 NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG---SKVKYGIYG--TDRFSLDRDS 60
N P F + + EE GT+++TL DP+ ++Y + +D +
Sbjct: 333 NENPYFAPNPKI-IRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVN 391
Query: 61 GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPL 120
G++ LDRE + + T D+G P+
Sbjct: 392 GQITTIAVLDRESPNVKNNIYNATFLA---------------------SDNGI----PPM 426
Query: 121 YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVL 180
+ + I + D+ + P + E E+ S+
Sbjct: 427 --------------------SGTGTLQIYLLDINDNAPQVLPQE--AETCETPEPNSIN- 463
Query: 181 RVEAKDGDLAQPRSIYY----DLLTNPDEFFLIDSNTGEL-KTAKPLDREILGGTNGVIS 235
+ A D D+ + + I+ G+ + + G+
Sbjct: 464 -ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFL----EAGIYE 518
Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
+ + + G P + + + + V + + + + + H
Sbjct: 519 VPIIITD--SGNPPKSNISI----LRVKVCQCDSNGDCTDVHHHHHH 559
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 138 bits (349), Expect = 4e-38
Identities = 53/298 (17%), Positives = 100/298 (33%), Gaps = 60/298 (20%)
Query: 88 VDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTN-----VDIRDGH--- 139
++ E K + I + + +G +RV + E+ + ++
Sbjct: 26 LEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIK 85
Query: 140 HTSKTNVDIRVGDVQNTPPIFINSS--FSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
+T V I V DV + PP FIN + +AP + V ++A+D D Y+
Sbjct: 86 YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD-HNIHYF 144
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
+ F +D +G ++T + + L V+A + + + + +
Sbjct: 145 IVRDRTGGRFEVDERSGVVRTRGTDLFQ----LDMEYVLYVKAED--QNGKVDDRRFQST 198
Query: 258 AQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL-----PDLD------MIVTDSDLV 306
+ ++I+ P F Y IPE+ S + +
Sbjct: 199 PEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGA 257
Query: 307 ----IAEET---HTAEKL------------------------SSSATLIVQVTDVNDN 333
I + A++L S+S L ++VTDVNDN
Sbjct: 258 GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDN 315
Score = 127 bits (322), Expect = 3e-34
Identities = 62/269 (23%), Positives = 88/269 (32%), Gaps = 64/269 (23%)
Query: 8 PPSFTTDVNS-PLVVEENTPPGTIVSTLEGVDP-EGSKVKYGIY---GTDRFSLDRDSGE 62
PP F VV+ N PP T V TL+ DP + Y I RF +D SG
Sbjct: 103 PPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGV 162
Query: 63 LRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYR 122
+R + VL ++ D
Sbjct: 163 VRTRGTDLFQ----LDMEYVLYVKAED--------------------------------- 185
Query: 123 EDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRV 182
N + D S + + + P F S+ EI E+ S ++ +
Sbjct: 186 --------QNGKVDDRRFQSTPEERLSIVGGKR-APQFYMPSYEAEIPENQKKDSDIISI 236
Query: 183 EAKDGDLAQPRSIYYDLL--TNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA 240
+AK + I Y L F I +G +K AK LD E L + V SL V A
Sbjct: 237 KAKSFADRE---IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH-VYSLIVTA 292
Query: 241 REMVDGKPLQEDQATAFAQVTVTILDVND 269
E D + +T+ + DVND
Sbjct: 293 TE--DSGGF-----STSVDLTIRVTDVND 314
Score = 114 bits (287), Expect = 3e-29
Identities = 37/252 (14%), Positives = 71/252 (28%), Gaps = 62/252 (24%)
Query: 172 SAPIGSVVLRVEAKDGDLAQPRSIYYDLLT---------NPDEFFLIDSNTGELKTAKPL 222
SA R+E + D + L D ++ G ++ K
Sbjct: 1 SAVRP--TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKW 58
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKE--YV 280
D E LG + + + + T +V + + DVND PP F +
Sbjct: 59 DYEELGPEKTIDFWVIITNMGHNAGI----KYTDNQRVIILVKDVNDEPPYFINRPLPMQ 114
Query: 281 VHIPEDIPDGSLLP-----DLD-------------------------MIVTDSDL----- 305
+ + P + + D D ++ T
Sbjct: 115 AVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 174
Query: 306 ------VIAEETHT---AEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSI 356
V AE+ + + S+ + + P F + +Y + E + + I
Sbjct: 175 MEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDI 233
Query: 357 TTITALDSDGGD 368
+I A +
Sbjct: 234 ISIKAKSFADRE 245
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 134 bits (340), Expect = 6e-38
Identities = 64/266 (24%), Positives = 99/266 (37%), Gaps = 66/266 (24%)
Query: 8 PPSFTTDVNSPLV-VEENTPPGTIVSTLEGVDPEGSKVKYGIYGTD---RFSLDRDSGEL 63
P FT + + E+TP G+ V+ L D + + +G+ G + F+++ D+G +
Sbjct: 5 LPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVV 64
Query: 64 RVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRE 123
+ QPLDRE S +
Sbjct: 65 WLRQPLDRE----TKSEFTVEFS------------------------------------- 83
Query: 124 DGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVE 183
+ D V+I+VGDV + P F N +S I E+ P+G+ + V
Sbjct: 84 -----------VSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVN 132
Query: 184 AKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREM 243
A D DL S+ Y P FF IDS G + + LD E LTV A +
Sbjct: 133 ATDPDLGAGGSVLYSFQ-PPSPFFAIDSARGIVTVIQELDYE----VTQAYQLTVNATDQ 187
Query: 244 VDGKPLQEDQATAFAQVTVTILDVND 269
+PL + A + + I D+ D
Sbjct: 188 DKTRPL-----STLANLAIIITDMQD 208
Score = 119 bits (300), Expect = 4e-32
Identities = 52/221 (23%), Positives = 78/221 (35%), Gaps = 60/221 (27%)
Query: 157 PPIFINSSFSG--EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNT 213
P F N F I E P+GS V ++ A+D D + + + FF ++ +T
Sbjct: 5 LPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDP---LVFGVSGEEASRFFAVEPDT 61
Query: 214 GELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPV 273
G + +PLDRE T ++ D Q +V + + DVND+ P
Sbjct: 62 GVVWLRQPLDRE----TKSEFTVEFSVS---DH------QGVITRKVNIQVGDVNDNAPT 108
Query: 274 FNRKEYVVHIPEDIPDG---------------------SLLPDLDMIVTDSD-------- 304
F+ + Y V IPE+ P G S P DS
Sbjct: 109 FHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQ 168
Query: 305 ------------LVIAEETHTAEKLSSSATLIVQVTDVNDN 333
V A + LS+ A L + +TD+ D
Sbjct: 169 ELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 74.2 bits (183), Expect = 1e-15
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 40/152 (26%)
Query: 268 NDSPPVFNRKEY--VVHIPEDIPDGSLLP-----DLD------MIVTDSDL---VIAEET 311
+ P F + + I ED P GS + D+D + + + +T
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDT 61
Query: 312 ---HTAEKL-------------------SSSATLIVQVTDVNDNVPSFELNAYTGNVLET 349
+ L + + +QV DVNDN P+F Y+ + E
Sbjct: 62 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 121
Query: 350 AQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
GT I + A D D G G+ ++Y
Sbjct: 122 TPVGTPIFIVNATDPDLGAGGS--VLYSFQPP 151
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 135 bits (342), Expect = 6e-37
Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 68/295 (23%)
Query: 20 VVEENTPPGTIVSTLEGVDP-EGS-KVKYGIYGT---DRFSLDRDSGELRVAQPLDREYN 74
V+EE + P I+ D GS K+KY + G F ++ +G++ + LDRE
Sbjct: 9 VLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE-- 66
Query: 75 STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
+ LT + VD E +K PL
Sbjct: 67 --EKAEYTLTAQAVDFETNK------------------------PL-------------- 86
Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS 194
+ I+V D+ + P F+N + + E + +G+ V V A D D +
Sbjct: 87 ------EPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGN 140
Query: 195 ---IYYDLLTNPDEFFLIDSNTGELKTAKP-LDREILGGTNGVISLTVRAREMVDGKPLQ 250
+ Y +L +F I+ T +KTA P +DRE + ++A++M
Sbjct: 141 SAKLVYSILEG-QPYFSIEPETAIIKTALPNMDRE----AKEEYLVVIQAKDMGGHSG-- 193
Query: 251 EDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
+ +TVT+ DVND+PP F + Y +PED+ G+ + + D D+
Sbjct: 194 --GLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI--GRVKANDQDI 244
Score = 129 bits (326), Expect = 1e-34
Identities = 57/257 (22%), Positives = 89/257 (34%), Gaps = 59/257 (22%)
Query: 171 ESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKPLDREILGG 229
E + +++ D D + I Y L F I+ TG++ K LDRE
Sbjct: 12 EFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE---- 66
Query: 230 TNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPD 289
+LT +A + KPL ++ + + D+ND+ P F Y +PE
Sbjct: 67 EKAEYTLTAQAVDFETNKPL-----EPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSIL 121
Query: 290 G------------------------SLLPDLDM----------IVTDSDL---VIAEETH 312
G S+L ++ E
Sbjct: 122 GTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLV 181
Query: 313 TAE---------KLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALD 363
+ LS + TL V +TDVNDN P F + Y +V E GT+I + A D
Sbjct: 182 VIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKAND 241
Query: 364 SDGGDYGTGGIVYELLG 380
D G+ Y+++
Sbjct: 242 QDIGE--NAQSSYDIID 256
Score = 94.7 bits (236), Expect = 4e-22
Identities = 55/273 (20%), Positives = 97/273 (35%), Gaps = 70/273 (25%)
Query: 8 PPSFT-TDVNSPLVVEENTPPGTIVSTLEGVDP------EGSKVKYGIY-GTDRFSLDRD 59
P F ++ V E + GT V+ + D +K+ Y I G FS++ +
Sbjct: 103 APEFLNGPYHAT--VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPE 160
Query: 60 SGELRVAQP-LDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQ 118
+ ++ A P +DRE ++ ++ D + SG L
Sbjct: 161 TAIIKTALPNMDRE----AKEEYLVVIQAKD-----------------MGGHSGGL---- 195
Query: 119 PLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSV 178
+ T + + + DV + PP F S + + E +G+
Sbjct: 196 ----------------------SGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTA 233
Query: 179 VLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLI----DSNTGELKTAKPLDREILGGTNGV 233
+ RV+A D D+ + YD++ + F I + G ++ KPLD E T
Sbjct: 234 IGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFE----TKKS 289
Query: 234 ISLTVRAREMVDGKPLQEDQATAF-AQVTVTIL 265
+L V A + + F TV I+
Sbjct: 290 YTLKVEAANI--HIDPRFSSRGPFKDTATVKIV 320
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 121 bits (304), Expect = 2e-32
Identities = 41/277 (14%), Positives = 71/277 (25%), Gaps = 67/277 (24%)
Query: 21 VEENTPPGTIVSTLEGVDP-----EGSKVKYGIYGT--------DRFSLDRDSGELRVAQ 67
+ + GT + + + ++ +YGT + + D+G L + +
Sbjct: 12 LYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQR 71
Query: 68 PLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHH 127
LD + +R
Sbjct: 72 SLDHS-----------------------------------SWEKLSVRNRGFPLLTVYLK 96
Query: 128 TSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPI----------FINSSFSGEIMESAPIGS 177
+ +R+G + + P F + S I E+ P G+
Sbjct: 97 VFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGT 156
Query: 178 VVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLT 237
L S+ Y LL F ++ E+ T LDRE L
Sbjct: 157 FHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDRE----QREKYELV 212
Query: 238 VRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
G + VT+ D +DS P F
Sbjct: 213 AVCTVH-AGAR----EEVVMVPFPVTVYDEDDSAPEF 244
Score = 108 bits (272), Expect = 9e-28
Identities = 40/243 (16%), Positives = 63/243 (25%), Gaps = 64/243 (26%)
Query: 160 FINSSFSGEIMESAPIGSVVLRVEAKDGD--------LAQPRSIYYDLLTNPDEFFLIDS 211
F ++ ++ G+ +L V A L Q Y + + + I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 212 NTGELKTAKPLDRE----ILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDV 267
+TG L + LD + G LTV + + L+E + V
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 268 NDSPPV----------FNRKEYVVHIPEDIPDGSLL-----PDLD--------------- 297
N S P F I E+ P G+ P
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 298 -----------MIVTDSDL-----------VIAEETHTAEKLSSSATLIVQVTDVNDNVP 335
+ T L + A + V V D +D+ P
Sbjct: 183 GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAP 242
Query: 336 SFE 338
FE
Sbjct: 243 EFE 245
Score = 39.9 bits (93), Expect = 7e-04
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 337 FELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI 384
F +AY + AGT + + AL + + + L G Y
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRT 50
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 113 bits (285), Expect = 7e-30
Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 66/262 (25%)
Query: 20 VVEENTPPGTIVSTLEGVDPEG--SKVKYGIYGTD---RFSLDRDSGELRVAQPLDREYN 74
V+EE T P ++ D + +KY + G F +D SG + + LDRE
Sbjct: 10 VIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDRE-- 67
Query: 75 STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
+ L ++DRD+
Sbjct: 68 --ERAQYTLMA-------------------QAVDRDTNRPL------------------- 87
Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS 194
+ ++V D+ + PP F++ + + E + +G+ V++V A D D +
Sbjct: 88 ------EPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGN 141
Query: 195 ---IYYDLLTNPDEFFLIDSNTGELKTAKP-LDREILGGTNGVISLTVRAREMVDGKPLQ 250
+ Y +L +F +++ TG ++TA P +DRE + ++A++M
Sbjct: 142 SAKLVYSILEG-QPYFSVEAQTGIIRTALPNMDRE----AKEEYHVVIQAKDMGGHMGGL 196
Query: 251 EDQATAFAQVTVTILDVNDSPP 272
VT+T+ D
Sbjct: 197 SGTTK----VTITLTDDYKDDD 214
Score = 100 bits (251), Expect = 5e-25
Identities = 43/226 (19%), Positives = 73/226 (32%), Gaps = 64/226 (28%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGE 215
F+ I E V++ D D + +I Y L F+ID +G
Sbjct: 6 NQFFV-------IEEYTGPDPVLVGRLHSDID-SGDGNIKYILSGEGAGTIFVIDDKSGN 57
Query: 216 LKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFN 275
+ K LDRE +L +A + +PL ++ V + D+ND+PP F
Sbjct: 58 IHATKTLDRE----ERAQYTLMAQAVDRDTNRPL-----EPPSEFIVKVQDINDNPPEFL 108
Query: 276 RKEYVVHIPEDIPDGSLLP-----DLDM------------IVTDSDL-VIAEET---HTA 314
+ Y ++PE G+ + D D I+ + +T TA
Sbjct: 109 HEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTA 168
Query: 315 EK-------------------------LSSSATLIVQVTDVNDNVP 335
LS + + + +TD +
Sbjct: 169 LPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 70.8 bits (174), Expect = 2e-14
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 306 VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
A + T L + IV+V D+NDN P F Y NV E + GTS+ +TA D+D
Sbjct: 76 AQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDAD 135
Query: 366 GGDYGTGG-IVYELL 379
YG +VY +L
Sbjct: 136 DPTYGNSAKLVYSIL 150
Score = 48.4 bits (116), Expect = 8e-07
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP------EGSKVKYGIY-GTDRFSLDRDS 60
PP F ++ V E + GT V + D +K+ Y I G FS++ +
Sbjct: 104 PPEFLHEIYHA-NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQT 162
Query: 61 GELRVAQP-LDREYNSTNTSTIVLTLEGVD 89
G +R A P +DRE + ++ D
Sbjct: 163 GIIRTALPNMDRE----AKEEYHVVIQAKD 188
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 103 bits (258), Expect = 4e-26
Identities = 49/256 (19%), Positives = 96/256 (37%), Gaps = 66/256 (25%)
Query: 20 VVEENTPPGTIVSTLEGVDPEG--SKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYN 74
++EE T D + +KY + G D F ++ ++G+++ + LDRE
Sbjct: 9 LLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDRE-- 66
Query: 75 STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
+L + V+ + P+
Sbjct: 67 --EKPVYILRAQAVNRRTGR------------------------PV-------------- 86
Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS 194
++ I++ D+ + PIF ++ + E A +G+ V++V A D D +
Sbjct: 87 ------EPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140
Query: 195 ---IYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMVDGKPLQ 250
+ Y +L +F ++S TG +KTA +DRE + ++A++M G +
Sbjct: 141 SAKVVYSILQG-QPYFSVESETGIIKTALLNMDRE----NREQYQVVIQAKDM--GGQMG 193
Query: 251 EDQATAFAQVTVTILD 266
T V +T+ D
Sbjct: 194 GLSGT--TTVNITLTD 207
Score = 97.0 bits (242), Expect = 7e-24
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 33/199 (16%)
Query: 156 TPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTG 214
F+ + E + D D S+ Y L + F+I+ NTG
Sbjct: 4 ANQFFL-------LEEYTGSDYQYVGKLHSDQDRGD-GSLKYILSGDGAGDLFIINENTG 55
Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
+++ K LDRE V L +A G+P+ ++ + I D+ND+ P+F
Sbjct: 56 DIQATKRLDRE----EKPVYILRAQAVNRRTGRPV-----EPESEFIIKIHDINDNEPIF 106
Query: 275 NRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNV 334
+ Y +PE G+ + + + TD+D +SA ++ +
Sbjct: 107 TKDVYTATVPEMADVGTFV--VQVTATDAD---------DPTYGNSAKVVYSILQGQ--- 152
Query: 335 PSFELNAYTGNVLETAQAG 353
P F + + TG +++TA
Sbjct: 153 PYFSVESETG-IIKTALLN 170
Score = 70.8 bits (174), Expect = 2e-14
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 306 VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
A T + + I+++ D+NDN P F + YT V E A GT + +TA D+D
Sbjct: 75 AQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDAD 134
Query: 366 GGDYGTGG-IVYELL 379
YG +VY +L
Sbjct: 135 DPTYGNSAKVVYSIL 149
Score = 48.4 bits (116), Expect = 8e-07
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP------EGSKVKYGIY-GTDRFSLDRDS 60
P FT DV + V E GT V + D +KV Y I G FS++ ++
Sbjct: 103 EPIFTKDVYTA-TVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESET 161
Query: 61 GELRVAQ-PLDREYNSTNTSTIVLTLEGVD 89
G ++ A +DRE N + ++ D
Sbjct: 162 GIIKTALLNMDRE----NREQYQVVIQAKD 187
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 102 bits (256), Expect = 8e-26
Identities = 45/260 (17%), Positives = 87/260 (33%), Gaps = 67/260 (25%)
Query: 15 VNSPLVVEEN--TPPGTIVSTLEGVDPEGSKVKYGIYG---TDRFSLDRDSGELRVAQPL 69
+ + + + E +P V L Y I G F + G++ + L
Sbjct: 3 IWNRMHIREEIDSPLPHHVGKLTSSVGNK-NAMYIIEGESANTIFKVQGYDGDIYAFERL 61
Query: 70 DREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTS 129
DRE + LT +D + + L
Sbjct: 62 DRE----KKAEYELTAHIIDRRNN------------------------RSL--------- 84
Query: 130 KTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDL 189
+ I+V D+ + PIF+ F+G + E + +G+ V +V A+D D
Sbjct: 85 -----------EPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADD 133
Query: 190 AQPRS---IYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDG 246
+ Y ++ +E+F +D + LDRE + + V+A++ +
Sbjct: 134 PTVAGHATVTYQII-KGNEYFTVDDSGVIFTARADLDRE----SQSAYEIIVKAKDALGL 188
Query: 247 KPLQEDQATAFAQVTVTILD 266
++ A V + + D
Sbjct: 189 TGE-----SSTATVIIRLTD 203
Score = 91.2 bits (227), Expect = 8e-22
Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 171 ESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKPLDREILGG 229
+P+ V ++ + G+ ++ Y + + + F + G++ + LDRE
Sbjct: 13 IDSPLPHHVGKLTSSVGN----KNAMYIIEGESANTIFKVQGYDGDIYAFERLDRE---- 64
Query: 230 TNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPD 289
LT + + + L ++ + + D+ND+ P+F +K + +PE
Sbjct: 65 KKAEYELTAHIIDRRNNRSL-----EPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRL 119
Query: 290 GSLLPDLDMIVTDSD 304
G+ + + D+D
Sbjct: 120 GTSV--TKVTAEDAD 132
Score = 72.4 bits (178), Expect = 4e-15
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 306 VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
+ L + I++V+D+NDN P F + G+V E ++ GTS+T +TA D+D
Sbjct: 73 AHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDAD 132
Query: 366 GGDYGTGG-IVYELLG 380
+ Y+++
Sbjct: 133 DPTVAGHATVTYQIIK 148
Score = 51.9 bits (125), Expect = 5e-08
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP------EGSKVKYGIY-GTDRFSLDRDS 60
P F + + V E + GT V+ + D + V Y I G + F++D
Sbjct: 101 APIFVQKIFNG-SVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFTVDDSG 159
Query: 61 GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGS 93
LDRE + S + ++ D G
Sbjct: 160 VIFTARADLDRE----SQSAYEIIVKAKDALGL 188
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 97.4 bits (243), Expect = 7e-24
Identities = 57/270 (21%), Positives = 99/270 (36%), Gaps = 75/270 (27%)
Query: 15 VNSPLVVEENTPPGTIVSTLEGVDP---EGSKVKYGIYG-------TDRFSLDRDSGELR 64
V P+ + EN+ G L + + ++Y + G T F ++ SG+L
Sbjct: 3 VIPPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLS 61
Query: 65 VAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRED 124
V +PLDRE + L VD G++V
Sbjct: 62 VTKPLDRE----LIARFHLRAHAVDINGNQV----------------------------- 88
Query: 125 GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEA 184
+ ++ I V D+ + P F++ ++G + E + G+ V+ V A
Sbjct: 89 ----------------ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTA 132
Query: 185 KDGDLAQPR--SIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISL 236
D D + Y +L+ F I++ TG++ T LDRE +L
Sbjct: 133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE----KVQQYTL 188
Query: 237 TVRAREMVDGKPLQEDQATAFAQVTVTILD 266
++A +M +G P T A +T+ D
Sbjct: 189 IIQATDM-EGNPTYGLSNT--ATAVITVTD 215
Score = 93.6 bits (233), Expect = 1e-22
Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 34/201 (16%)
Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
+ E++ G + D + S+ Y + P F+I+ +G+L KPL
Sbjct: 8 NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
DRE L A ++ +G + + + ++D+ND+ P F + +
Sbjct: 67 DRE----LIARFHLRAHAVDI-NGNQV-----ENPIDIVINVIDMNDNRPEFLHQVWNGS 116
Query: 283 IPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAY 342
+PE G+ + + + D+D + L I+ + F +N
Sbjct: 117 VPEGSKPGTYV--MTVTAIDAD----DPNALNGMLRYR---ILSQAPSTPSPNMFTINNE 167
Query: 343 TGNVLETAQAGTSITTITALD 363
TG++ IT LD
Sbjct: 168 TGDI---------ITVAAGLD 179
Score = 68.5 bits (168), Expect = 1e-13
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 305 LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDS 364
L ++ + +++ V D+NDN P F + G+V E ++ GT + T+TA+D+
Sbjct: 76 LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135
Query: 365 DGGDYGTGGIVYELLG 380
D + G + Y +L
Sbjct: 136 DDPNALNGMLRYRILS 151
Score = 43.9 bits (104), Expect = 3e-05
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVD---PEG--SKVKYGI-------YGTDRFS 55
P F V + V E + PGT V T+ +D P ++Y I + F+
Sbjct: 105 RPEFLHQVWNG-SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 56 LDRDSGELR-VAQPLDREYNSTNTSTIVLTLEGVDPEG 92
++ ++G++ VA LDRE L ++ D EG
Sbjct: 164 INNETGDIITVAAGLDRE----KVQQYTLIIQATDMEG 197
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 95.5 bits (238), Expect = 3e-23
Identities = 49/219 (22%), Positives = 78/219 (35%), Gaps = 30/219 (13%)
Query: 163 SSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKP 221
S + P V +V D + + +P F I+ NTG + +
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT 65
Query: 222 LDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVV 281
LDRE T L V + GK L + V ++D ND+ P+F Y+
Sbjct: 66 LDRE----TIATYQLYVETTDA-SGKTL-----EGPVPLEVIVIDQNDNRPIFREGPYIG 115
Query: 282 HIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNA 341
H+ E P G+ + + M D+D + L + I Q T + F ++
Sbjct: 116 HVMEGSPTGTTV--MRMTAFDAD----DPATDNALLRYN---IRQQTPDKPSPNMFYIDP 166
Query: 342 YTGNVL----------ETAQAGTSITTITALDSDGGDYG 370
G+++ ET + I A D G D G
Sbjct: 167 EKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVG 205
Score = 89.4 bits (222), Expect = 6e-21
Identities = 57/271 (21%), Positives = 92/271 (33%), Gaps = 75/271 (27%)
Query: 15 VNSPLVVEEN--TPPGTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRV 65
V SP+++ EN P V + D K+ + G F ++ ++G + V
Sbjct: 4 VVSPILIPENQRQPFPRDVGKVVDSDR-PEGSKFRLTGKGVDQDPKGTFRINENTGSVSV 62
Query: 66 AQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDG 125
+ LDRE +T L +E D G +
Sbjct: 63 TRTLDRE----TIATYQLYVETTDASGKTL------------------------------ 88
Query: 126 HHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAK 185
+++ V D + PIF + G +ME +P G+ V+R+ A
Sbjct: 89 ---------------EGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAF 133
Query: 186 DGDLAQPR--SIYYDLLTN-----PDEFFLIDSNTGELKTAKP---LDREILGGTNGVIS 235
D D + Y++ F ID G++ T LDRE L N
Sbjct: 134 DADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETL--ENPKYE 191
Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
L + A++M + T A T+ I D
Sbjct: 192 LIIEAQDM----AGLDVGLTGTATATIVIDD 218
Score = 72.0 bits (177), Expect = 8e-15
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 305 LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDS 364
L + + + L L V V D NDN P F Y G+V+E + GT++ +TA D+
Sbjct: 76 LYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDA 135
Query: 365 DGGDYGTGGIVYELLGE 381
D + Y + +
Sbjct: 136 DDPATDNALLRYNIRQQ 152
Score = 42.4 bits (100), Expect = 8e-05
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-----EGSKVKYGI-------YGTDRFS 55
P F V E +P GT V + D + + ++Y I + F
Sbjct: 105 RPIFREGPYIG-HVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFY 163
Query: 56 LDRDSGELRVAQP---LDREYNSTNTSTIVLT 84
+D + G++ LDRE +++
Sbjct: 164 IDPEKGDIVTVVSPALLDRETLENPKYELIIE 195
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 95.1 bits (237), Expect = 4e-23
Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 31/208 (14%)
Query: 80 TIVLTLEGVDP---EGSKVKYGIYG-------TDWFSLDRDSGELRVAQPLYRE--DGHH 127
L + + +KV Y I G F ++R++G L+V QPL RE +
Sbjct: 16 EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI 75
Query: 128 TSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDG 187
V + I V D + P F F G + E A G+ V++V A D
Sbjct: 76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDA 135
Query: 188 DLAQPRS---IYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTV 238
D I Y +++ F ++ +TG + LDRE + +L V
Sbjct: 136 DDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRE----SYPTYTLVV 191
Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILD 266
+A ++ G+ L + A+ +T+ D
Sbjct: 192 QAADL-QGEGL-----STTAKAVITVKD 213
Score = 90.9 bits (226), Expect = 2e-21
Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 30/185 (16%)
Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
E+ G + + + ++Y + P F+I+ TG LK +PL
Sbjct: 8 SCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
DRE L A +G+ + ++ +T+ D ND+ P F ++ +
Sbjct: 67 DRE----AIAKYILYSHAVSS-NGEAV-----EDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 283 IPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATL---IVQVTDVNDNVPSFEL 339
+ E G+ + + + TD+D + + +A + IV + F +
Sbjct: 117 VAEGAVPGTSV--MKVSATDAD---------DDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 340 NAYTG 344
N TG
Sbjct: 166 NRDTG 170
Score = 67.7 bits (166), Expect = 2e-13
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 317 LSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGT-GGIV 375
+ +++ VTD NDN P F + G+V E A GTS+ ++A D+D I
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 376 YELLGE 381
Y ++ +
Sbjct: 148 YTIVSQ 153
Score = 44.6 bits (106), Expect = 1e-05
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTL------EGVDPEGSKVKYGI-------YGTDRF 54
P FT +V V E PGT V + + V+ + + Y I + F
Sbjct: 105 RPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMF 163
Query: 55 SLDRDSGELRVA-QPLDREYNST 76
+++RD+G + V LDRE T
Sbjct: 164 TVNRDTGVISVLTSGLDRESYPT 186
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 77.9 bits (193), Expect = 8e-18
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPD--- 204
+ P F S + ++ E++ G+ +L++ A D D+ I Y +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 205 EFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVD-GKPLQEDQATAFAQVTVT 263
+D +G L +DRE + TV AR D G+P + D+AT V +
Sbjct: 62 RLLRLDETSGWLSVLHRIDRE----EVNQLRFTVMAR---DRGQPPKTDKAT----VVLN 110
Query: 264 ILDVNDSPP 272
I D ND+ P
Sbjct: 111 IKDENDNVP 119
Score = 55.9 bits (136), Expect = 5e-10
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 44/118 (37%)
Query: 262 VTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL-----PDLDM---------IVTDSDLVI 307
+ ND+ P F + Y + E+ G+ + DLD+ ++ V
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 308 A-------------------EETHTAE-----------KLSSSATLIVQVTDVNDNVP 335
EE + + AT+++ + D NDNVP
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 54.4 bits (132), Expect = 2e-09
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
+ NDN P FE + Y ++ E + GT I + A D D G G I Y
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQ--IEYVF 53
Score = 46.7 bits (112), Expect = 7e-07
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 21 VEENTPPGTIVSTLEGVDP-EGS--KVKYGIYGTDR-----FSLDRDSGELRVAQPLDRE 72
+ EN+ PGT + L D G +++Y LD SG L V +DRE
Sbjct: 23 LAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDRE 82
Score = 34.4 bits (80), Expect = 0.014
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 80 TIVLTLEGVDP-EGS--KVKYGIYGT-----DWFSLDRDSGELRVAQPLYREDGHHTSKT 131
T +L L D G +++Y LD SG L V + RE+ + +
Sbjct: 31 TPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREE-VNQLRF 89
Query: 132 NVDIRDG---HHTSKTNVDIRVGDV 153
V RD T K V + + D
Sbjct: 90 TVMARDRGQPPKTDKATVVLNIKDE 114
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 76.9 bits (190), Expect = 1e-17
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
+ E++ G + + S+ Y + P F+I+ +G+L KPL
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
DRE L A ++ +G + + + ++D+ND+ P F
Sbjct: 69 DRE----LIARFHLRAHAVDI-NGNQV-----ENPIDIVINVIDMNDNRPEF 110
Score = 45.7 bits (109), Expect = 1e-06
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 15 VNSPLVVEENTPPGTIVSTLEGVDP---EGSKVKYGIYG-------TDRFSLDRDSGELR 64
V P+ + EN+ G L + + ++Y + G T F ++ SG+L
Sbjct: 5 VIPPINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLS 63
Query: 65 VAQPLDRE 72
V +PLDRE
Sbjct: 64 VTKPLDRE 71
Score = 36.5 bits (85), Expect = 0.003
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 317 LSSSATLIVQVTDVNDNVPSF 337
+ + +++ V D+NDN P F
Sbjct: 90 VENPIDIVINVIDMNDNRPEF 110
Score = 34.2 bits (79), Expect = 0.013
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 80 TIVLTLEGVDP---EGSKVKYGIYGTDW-------FSLDRDSGELRVAQPLYREDGHHTS 129
L + + ++Y + G F ++ SG+L V +PL RE
Sbjct: 18 PFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH 77
Query: 130 KTNVDIRDGHH---TSKTNVDIRVGDVQNTPPIF 160
D + + ++ I V D+ + P F
Sbjct: 78 LR-AHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 26.1 bits (58), Expect = 10.0
Identities = 4/31 (12%), Positives = 8/31 (25%), Gaps = 2/31 (6%)
Query: 351 QAGTSITTITALDSDGGDYGTGGIVYELLGE 381
G + + S + Y + G
Sbjct: 15 SRGPFPQELVRIRSGRDK--NLSLRYSVTGP 43
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 73.5 bits (181), Expect = 3e-16
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 22/123 (17%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDS 211
P+ + E + + ++ + D + I Y P F+ +
Sbjct: 15 APVAL------REGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNK 67
Query: 212 NTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSP 271
+TGEL LDRE LT A + G ++ ++ + +LD+ND+
Sbjct: 68 DTGELNVTSILDRE----ETPFFLLTGYALDA-RGNNVE-----KPLELRIKVLDINDNE 117
Query: 272 PVF 274
PVF
Sbjct: 118 PVF 120
Score = 43.9 bits (104), Expect = 7e-06
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 15 VNSPLVVEEN--TPPGTIVSTLEGVDPEG--SKVKYGIYG-------TDRFSLDRDSGEL 63
+ +P+ + E ++ + E K+ Y G F ++D+GEL
Sbjct: 13 ITAPVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGEL 72
Query: 64 RVAQPLDRE 72
V LDRE
Sbjct: 73 NVTSILDRE 81
Score = 36.2 bits (84), Expect = 0.004
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 317 LSSSATLIVQVTDVNDNVPSFE 338
+ L ++V D+NDN P F
Sbjct: 100 VEKPLELRIKVLDINDNEPVFT 121
Score = 35.0 bits (81), Expect = 0.010
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 91 EGSKVKYGIYG-------TDWFSLDRDSGELRVAQPLYRE--DGHHTSKTNVDIRDGHHT 141
G K+ Y G F ++D+GEL V L RE + +D R +
Sbjct: 42 RGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVE 101
Query: 142 SKTNVDIRVGDVQNTPPIF 160
+ I+V D+ + P+F
Sbjct: 102 KPLELRIKVLDINDNEPVF 120
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 69.4 bits (171), Expect = 7e-15
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDE-- 205
+ P+F I E+AP+G+ V+++ A D D+ I Y
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 206 --FFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVT 263
F +++ TG + + LDRE + +TV A DG A A VT+
Sbjct: 62 KRLFALNNTTGLITVQRSLDRE----ETAIHKVTVLAS---DGSST-----PARATVTIN 109
Query: 264 ILDVN 268
+ DVN
Sbjct: 110 VTDVN 114
Score = 54.0 bits (131), Expect = 2e-09
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
+ NDN P F+ ++ E A GTS+ + A D+D G I Y
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAE--IRYIF 53
Score = 49.8 bits (120), Expect = 6e-08
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 262 VTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
+ ND+ PVF + VHIPE+ P G+ + + + TD+D
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSV--IQLHATDAD 42
Score = 45.9 bits (110), Expect = 1e-06
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 21 VEENTPPGTIVSTLEGVDP-EGS--KVKYGIYG------TDRFSLDRDSGELRVAQPLDR 71
+ EN P GT V L D GS +++Y F+L+ +G + V + LDR
Sbjct: 23 IPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR 82
Query: 72 E 72
E
Sbjct: 83 E 83
Score = 34.0 bits (79), Expect = 0.020
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 80 TIVLTLEGVDP-EGS--KVKYGIYG------TDWFSLDRDSGELRVAQPLYREDGHHTSK 130
T V+ L D GS +++Y F+L+ +G + V + L RE+ T+
Sbjct: 31 TSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREE---TAI 87
Query: 131 TNVDI--RD-GHHTSKTNVDIRVGDV 153
V + D ++ V I V DV
Sbjct: 88 HKVTVLASDGSSTPARATVTINVTDV 113
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 60.9 bits (148), Expect = 7e-12
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSN 212
P+ E+ G + + + ++Y + T P F+I+
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
TG LK +PLDRE +L A +G ++ ++ +T+ D
Sbjct: 61 TGWLKVTEPLDRE----RIATYTLFSHAVSS-NGNAVE-----DPMEILITVTD 104
Score = 40.4 bits (95), Expect = 8e-05
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 9 PSFTTDVNSPLVVEENTPP-GTIVSTLEGVDPEGSKVKYGIYGTD-------RFSLDRDS 60
P + + E P + ++ + KV Y I G F ++R++
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERET 61
Query: 61 GELRVAQPLDRE 72
G L+V +PLDRE
Sbjct: 62 GWLKVTEPLDRE 73
Score = 28.9 bits (65), Expect = 1.00
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 93 SKVKYGIYGTD-------WFSLDRDSGELRVAQPLYRE 123
KV Y I G F ++R++G L+V +PL RE
Sbjct: 36 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRE 73
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 56.6 bits (137), Expect = 1e-10
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 17/112 (15%)
Query: 156 TPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTG 214
PI I + P V +V D + + +P F I+ NTG
Sbjct: 5 VSPILI------PENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTG 58
Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
+ + LDRE T L V + GK L + V ++D
Sbjct: 59 SVSVTRTLDRE----TIATYQLYVETTDA-SGKTL-----EGPVPLEVIVID 100
Score = 43.1 bits (102), Expect = 9e-06
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 15 VNSPLVVEENT--PPGTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRV 65
V SP+++ EN P V + D K+ + G F ++ ++G + V
Sbjct: 4 VVSPILIPENQRQPFPRDVGKVVDSDRP-EGSKFRLTGKGVDQDPKGTFRINENTGSVSV 62
Query: 66 AQPLDRE 72
+ LDRE
Sbjct: 63 TRTLDRE 69
Score = 28.5 bits (64), Expect = 1.1
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 105 FSLDRDSGELRVAQPLYRE--DGHHTSKTNVDIRDGHHTSKTNVDIRVGD 152
F ++ ++G + V + L RE + D +++ V D
Sbjct: 51 FRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 56.6 bits (137), Expect = 2e-10
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 168 EIMESA--PIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDR 224
I E+ P +V RV D +Y + P F I+ N+GE+ K LDR
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67
Query: 225 EILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
E L V + +GK + + + ++D
Sbjct: 68 E----AIPSYQLQVETTDE-NGKTI-----EGPVDLEILVID 99
Score = 43.5 bits (103), Expect = 6e-06
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 15 VNSPLVVEENT--PPGTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRV 65
V + + EN P IV + D K +YG F ++ +SGE+ V
Sbjct: 3 VAPSISIPENQRIPFPKIVGRVVVSDRI-PGSKIKLYGKGVDQEPKGIFKINENSGEVSV 61
Query: 66 AQPLDRE 72
+ LDRE
Sbjct: 62 TKALDRE 68
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 56.2 bits (136), Expect = 2e-10
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGEL 216
F+ E + + D D Y F ID TG++
Sbjct: 6 NQFFVLE-------EYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDI 58
Query: 217 KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
+ LDRE +L +A + G+P+ ++ + I D
Sbjct: 59 HAIQRLDRE----ERSQYTLRAQALDRRTGRPM-----EPESEFIIKIQD 99
Score = 47.8 bits (114), Expect = 2e-07
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 20 VVEENTPPGTIVSTLEGVDPEG--SKVKYGIYG---TDRFSLDRDSGELRVAQPLDRE 72
V+EE T + D + +KY + G F++D +G++ Q LDRE
Sbjct: 10 VLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67
Score = 35.1 bits (81), Expect = 0.007
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 72 EYNSTNTSTIVLTLEGVDPEGSKVKYGIYG---TDWFSLDRDSGELRVAQPLYRE 123
EY T+ + +D +KY + G F++D +G++ Q L RE
Sbjct: 13 EYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 55.5 bits (134), Expect = 4e-10
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGEL 216
+F+ E + +++ D D + Y F I+ TG++
Sbjct: 5 NQMFVLE-------EFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDI 57
Query: 217 KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
K LDRE +LT +A + KPL ++ + + D
Sbjct: 58 HAIKRLDRE----EKAEYTLTAQAVDFETNKPL-----EPPSEFIIKVQD 98
Score = 47.4 bits (113), Expect = 2e-07
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 16 NSPLVVEENTPPGTIVSTL--EGVDPEGSKVKYGIYG---TDRFSLDRDSGELRVAQPLD 70
N V+EE + P I+ +DP K+KY + G F ++ +G++ + LD
Sbjct: 5 NQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLD 64
Query: 71 REYNSTNTSTIVLTLEGVDPEGSK 94
RE + LT + VD E +K
Sbjct: 65 RE----EKAEYTLTAQAVDFETNK 84
Score = 35.1 bits (81), Expect = 0.006
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 72 EYNSTNTSTIVLTLEGVDPEGSKVKYGIYG---TDWFSLDRDSGELRVAQPLYRE 123
E++ + +DP K+KY + G F ++ +G++ + L RE
Sbjct: 12 EFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE 66
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 55.3 bits (134), Expect = 9e-10
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 169 IMESAPIGSVVLRVEAKD-----GDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLD 223
++E GS+V + AKD +L R N + ++ +G L + LD
Sbjct: 17 VLEETDRGSLVGNL-AKDLGLSLRELI-TRGAQILSKGN-KQLLQLEQKSGNLLLKEKLD 73
Query: 224 REILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKE 278
RE L G+ L +++ P+Q F Q + + DVND P F E
Sbjct: 74 REELCGSTNPCILHF---QVLLKSPVQ------FIQGEIQLQDVNDHAPEFMEDE 119
Score = 33.0 bits (76), Expect = 0.049
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 21 VEENTPPGTIVSTLE---GVDP-EGSKVKYGIY---GTDRFSLDRDSGELRVAQPLDRE 72
V E T G++V L G+ E I L++ SG L + + LDRE
Sbjct: 17 VLEETDRGSLVGNLAKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDRE 75
Score = 29.9 bits (68), Expect = 0.56
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 325 VQVTDVNDNVPSF 337
+Q+ DVND+ P F
Sbjct: 103 IQLQDVNDHAPEF 115
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 54.4 bits (131), Expect = 9e-10
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 168 EIMESA--PIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKPLDR 224
I E+ P V +V +G + + +P F I+ +G++ +PLDR
Sbjct: 8 LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67
Query: 225 EILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
E L V ++ GK + ++ ++++D
Sbjct: 68 E----AIANYELEVEVTDL-SGKII-----DGPVRLDISVID 99
Score = 39.7 bits (93), Expect = 1e-04
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 15 VNSPLVVEENTPP--GTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRV 65
+ +P+++ EN P V + + K+ + G F ++ SG++ V
Sbjct: 3 LATPILIPENQRPPFPRSVGKVIRSEGT-EGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61
Query: 66 AQPLDREYNSTNTSTIVLTLEGVDPEG 92
+PLDRE + L +E D G
Sbjct: 62 TRPLDRE----AIANYELEVEVTDLSG 84
Score = 27.4 bits (61), Expect = 3.2
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 105 FSLDRDSGELRVAQPLYRE--DGHHTSKTNVDIRDGHHTSKTNVDIRVGD 152
F ++ SG++ V +PL RE + D+ +DI V D
Sbjct: 50 FRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 1e-08
Identities = 47/299 (15%), Positives = 78/299 (26%), Gaps = 117/299 (39%)
Query: 113 ELRVAQPLYRE-----DGHHTSKTNVDIRD----------GHHTSKTNVDIRVGDVQNTP 157
+L ++ D H I D H + IR +N
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR----ENYS 1689
Query: 158 PIFINSSFSG-----EIMESAPIGSVVLRVEAKDGDL-----AQP------RSIYYDL-- 199
+ + G +I + S ++ G L QP ++ + DL
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 200 --LTNPDEFF----LIDSNTGELKTAKPLDREILGGTNGVISL-----TVRAREMVDGKP 248
L D F L GE A L V+S+ V R G
Sbjct: 1750 KGLIPADATFAGHSL-----GEY-AA-------LASLADVMSIESLVEVVFYR----GMT 1792
Query: 249 LQED-QATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVI 307
+Q + ++ +N ++ L +V
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPG-------RVAASFSQE--------ALQYVV------- 1830
Query: 308 AEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQ---AGTSITTITALD 363
E++ +V++ VN NV + Q AG + ALD
Sbjct: 1831 -------ERVGKRTGWLVEI--VNYNVEN-------------QQYVAAG----DLRALD 1863
Score = 43.9 bits (103), Expect = 8e-05
Identities = 53/268 (19%), Positives = 76/268 (28%), Gaps = 88/268 (32%)
Query: 154 QNTPPIFINSSF---SGEIMESAP----------IGSVVLRVEAKDGDLAQPRSIYYDLL 200
+ P + S S E E P V V + L + + L+
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 201 TNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQA------ 254
+ +G P L G N LT+R + G DQ+
Sbjct: 372 NGAKNLVV----SGP-----PQS---LYGLN----LTLRKAKAPSGL----DQSRIPFSE 411
Query: 255 ------TAFAQVTV------------TIL-DVNDSPPVFNRKEYVVHIP-EDIPDG---- 290
F V I D+ + FN K+ + IP D DG
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD--IQIPVYDTFDGSDLR 469
Query: 291 ----SLLPDL-DMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGN 345
S+ + D I+ V E T AT I+ D P + G
Sbjct: 470 VLSGSISERIVDCIIRLP--VKWETT-----TQFKATHIL------DFGPG--GASGLGV 514
Query: 346 VLETAQAGTSITTITALDSDGG---DYG 370
+ + GT + I A D DYG
Sbjct: 515 LTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 43.1 bits (101), Expect = 1e-04
Identities = 49/276 (17%), Positives = 83/276 (30%), Gaps = 122/276 (44%)
Query: 15 VNSP--LVVEENT-PPGTIVSTLEGVD--------PEG---SKVKYG---IYGTDRFSLD 57
VN LVV + PP +L G++ P G S++ + + ++RF
Sbjct: 371 VNGAKNLVV---SGPP----QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--- 420
Query: 58 RDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVA 117
L VA P + I L + + ++ ++++
Sbjct: 421 -----LPVASPFHSHLLVPASDLINKDLVKNN------------VSF-----NAKDIQI- 457
Query: 118 QPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGS 177
P+Y T DG D+R SG I E I
Sbjct: 458 -PVY-----DT-------FDGS-------DLR--------------VLSGSISER--IVD 481
Query: 178 VVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLT 237
++R P + ++ T ++D G P GG +G+ LT
Sbjct: 482 CIIR---------LP--VKWETTTQFKATHILD--FG------P------GGASGLGVLT 516
Query: 238 VRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPV 273
R DG ++ + LD+N
Sbjct: 517 HR---NKDGTGVRV--------IVAGTLDINPDDDY 541
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 44.5 bits (106), Expect = 3e-06
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 19/107 (17%)
Query: 169 IMESAPIGSVVLRVEAKD-----GDLAQPRSIYYDLLTNPDE-FFLIDSNTGELKTAKPL 222
I E A G+ V R+ A+D +L + + + ++ G L +
Sbjct: 9 IPEEAKHGTFVGRI-AQDLGLELTELVPRL---FRVASKDRGDLLEVNLQNGILFVNSRI 64
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVND 269
DRE L G + S+ + E++ +PLQ V V + D+ND
Sbjct: 65 DREELCGRSAECSIHL---EVIVDRPLQ------VFHVEVEVRDIND 102
Score = 32.6 bits (75), Expect = 0.044
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 21 VEENTPPGTIVSTLE---GVDP-EGSKVKYGIY---GTDRFSLDRDSGELRVAQPLDRE 72
+ E GT V + G++ E + + D ++ +G L V +DRE
Sbjct: 9 IPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDRE 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.020
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 310 ETHTAEKLSSSATLIVQVTDVNDNVPSFELNA 341
E +KL +S L +D+ P+ + A
Sbjct: 18 EKQALKKLQASLKLYA-----DDSAPALAIKA 44
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 4.6
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 36/113 (31%)
Query: 22 EENTPPG-TIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVA-QPLD--------R 71
+ PP IVS LE D + K+ L +A +P +
Sbjct: 138 KAKVPPLIRIVSGLELSDTKQKGKKF----------------LVIAYEPFENIAIELPPN 181
Query: 72 EYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRED 124
E + + + +GVD K + W D S V Q +++
Sbjct: 182 EILFSENNDMDNNNDGVDELNKKCTF------W---DAISKLYYV-QFFFKQA 224
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 28.3 bits (64), Expect = 5.1
Identities = 11/97 (11%), Positives = 26/97 (26%), Gaps = 20/97 (20%)
Query: 136 RDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVE-----------A 184
+G D P +S + + A
Sbjct: 372 FEGQM----WYDHTGDRSTYVP-----NSNGDSWSDETGPVDDGWEADGTLTREAQALRA 422
Query: 185 KDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKP 221
D D Q ++ ++ ++ + +++ G LK +
Sbjct: 423 DDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQ 459
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus,
HCMV, herpesviru packaging, DNA binding protein; 2.15A
{Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Length = 279
Score = 27.5 bits (61), Expect = 7.8
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPI 175
GHH + DI T ++ + +I ++ +
Sbjct: 2 GHHHHHHDYDIP-----TTENLYFQGGGTNKISQNTVL 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.134 0.377
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,113,215
Number of extensions: 385969
Number of successful extensions: 977
Number of sequences better than 10.0: 1
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 186
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.6 bits)