RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4200
(388 letters)
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 67.7 bits (164), Expect = 9e-15
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
N P F+ + ++ E G ++ + A+D D Q + + Y + +P + ++ + G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60
Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDV 267
+ LDRE N ++ + + DG T + + +LDV
Sbjct: 61 IVTGNGNLDRESEYVKNNTYTVIMLVTD--DGVS----VGTGTGTLILHVLDV 107
Score = 42.3 bits (98), Expect = 8e-06
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 6 NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG-----SKVKYGIYGTDRFSLDRDS 60
N P F V+ + V E+ G + +L DP+ G ++++D+
Sbjct: 1 NEAPFFVPAVSR-VDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 59
Query: 61 GELRVAQPLDREYNSTNTSTIVLTLEGVD 89
G + LDRE +T + + D
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTD 88
Score = 33.4 bits (75), Expect = 0.010
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 332 DNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGT 371
+ P F +V E G I ++ A D D
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQK 40
Score = 31.9 bits (71), Expect = 0.035
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 269 DSPPVFNRKEYVVHIPEDIPDGSLLP 294
+ P F V + ED+ G +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKII 26
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 56.9 bits (136), Expect = 1e-10
Identities = 14/143 (9%), Positives = 36/143 (25%), Gaps = 18/143 (12%)
Query: 150 VGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLI 209
G++ F +S + + G +L V+ + + + +
Sbjct: 3 SGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYES-----SEPADFK 57
Query: 210 DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVND 269
G + + + A++ E Q V ++
Sbjct: 58 VDEDGTVYAVRSFPLT-----AEQAKFLIYAQDK-------ETQEKWQVAVNLSREPTLT 105
Query: 270 SPPVF-NRKEYVVHIPEDIPDGS 291
P+ + + P + S
Sbjct: 106 EEPMKEPHEIEEIVFPRQLAKHS 128
Score = 41.1 bits (95), Expect = 3e-05
Identities = 3/43 (6%), Positives = 13/43 (30%)
Query: 329 DVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGT 371
++ F + Y+ + + G + + + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQ 47
Score = 40.4 bits (93), Expect = 6e-05
Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 266 DVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIV 325
++ F Y +P+D+ +G L L++ ++ + + ++E
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPL--LNVKFSNCNRKRKVQYESSEPADFKVDEDG 62
Query: 326 QVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
V V + E + + +
Sbjct: 63 TVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREP 102
Score = 29.2 bits (64), Expect = 0.41
Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQ 67
F DV S V+ ++ G + ++ + + + G + +
Sbjct: 10 KTGFPEDVYS-AVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTVYAVR 68
Query: 68 PLDREYN 74
Sbjct: 69 SFPLTAE 75
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 51.5 bits (122), Expect = 6e-09
Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSI--YYDLLTNPDEFFLIDSNTG 214
PIF +++ + E+ G V R+ D D+ + Y + N FF I ++
Sbjct: 5 APIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPE 63
Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDV 267
+ + + L + + +P T+ A VTVT+ DV
Sbjct: 64 SNQGILTTAKGLDFELRKQYVLQITVE---NAEPFSVPLPTSTATVTVTVEDV 113
Score = 35.7 bits (81), Expect = 0.002
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITALDSDG 366
NDN P F+ YT V E G + ++ D D
Sbjct: 2 NDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDM 36
Score = 33.1 bits (74), Expect = 0.016
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLL 293
ND+ P+F+ K Y +PE+ +
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQ 27
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 47.0 bits (110), Expect = 2e-07
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS-------IYYDLLTNPDEFFLI 209
P F++ ++G + E + G+ V+ V A D D + + T F I
Sbjct: 4 RPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTI 63
Query: 210 DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
++ TG++ T +L ++A D + + A +T+ D
Sbjct: 64 NNETGDIITVAAGLDR---EKVQQYTLIIQAT---DMEGNPTYGLSNTATAVITVTD 114
Score = 38.9 bits (89), Expect = 1e-04
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
NDN P F + G+V E ++ GT + T+TA+D+D + G + Y ++ +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQ 51
Score = 34.7 bits (78), Expect = 0.004
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQV 327
ND+ P F + + +PE G+ + + D+D A ++ S A
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVM--TVTAIDADDPNALNGMLRYRIVSQAPSTPSP 58
Query: 328 TDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDG 366
N + ++ + ++ I A D +G
Sbjct: 59 NMFTINNETGDIITVAAGLDREKVQQYTL-IIQATDMEG 96
Score = 26.6 bits (57), Expect = 2.9
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIY------------GTDRFS 55
P F V + V E + PGT V T+ +D + G+ + F+
Sbjct: 4 RPEFLHQVWN-GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFT 62
Query: 56 LDRDSGELRV-AQPLDREYNSTNTSTIVLTLEGVDPEGS 93
++ ++G++ A LDRE T I T +P
Sbjct: 63 INNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYG 101
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 42.0 bits (97), Expect = 1e-05
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 17/118 (14%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEA---KDGDLAQPRSIYYDLLTNPDE-----FFL 208
P F F G + E A G+ V++V A D +I Y +++ E F
Sbjct: 4 RPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFT 63
Query: 209 IDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
++ +TG + + +L V+A ++ G+ L + A+ +T+ D
Sbjct: 64 VNRDTGVISVLTSGLDR---ESYPTYTLVVQAADL-QGEGL-----STTAKAVITVKD 112
Score = 36.6 bits (83), Expect = 8e-04
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQV 327
ND+ P F ++ + + E G+ + + D D+ +S L +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 328 TDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDG 366
+ +G E+ T + A D G
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYP--TYTLVVQAADLQG 97
Score = 35.9 bits (81), Expect = 0.002
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGI 374
NDN P F + G+V E A GTS+ ++A D+D
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAA 44
Score = 26.2 bits (56), Expect = 3.5
Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 8 PPSFTTDVNSPLVVEENTPPGTIV------STLEGVDPEGSKVKYGIYGTD-------RF 54
P FT +V V E PGT V + V+ + + Y I D F
Sbjct: 4 RPEFTQEVFE-GSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMF 62
Query: 55 SLDRDSGELRVAQPL-DREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTD 103
+++RD+G + V DRE T T + + + K I D
Sbjct: 63 TVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 41.2 bits (95), Expect = 2e-05
Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIY---------YDLLTNPDEFF 207
P F F G + E G+ V+ V A D D P+ F
Sbjct: 5 RPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFT 64
Query: 208 LIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
+ LDRE +LTV+A ++ +G L + + + I D
Sbjct: 65 INRETGVISLIGTGLDRE----KFPEYTLTVQATDL-EGAGL-----SVEGKAIIQITD 113
Score = 35.0 bits (79), Expect = 0.003
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITA 361
NDN P F + + G+V E Q GT + ++A
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSA 32
Score = 34.6 bits (78), Expect = 0.004
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLL 293
ND+ P F + + + E + G+ +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQV 27
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 37.9 bits (87), Expect = 3e-04
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYY-----DLLTNPDEFFLIDSNTGELKTAKPL 222
+ E++ G + + S+ Y P F+I+ +G+L KPL
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
DRE+ L A ++ +G + + + ++D
Sbjct: 69 DREL----IARFHLRAHAVDI-NGNQV-----ENPIDIVINVID 102
Score = 32.5 bits (73), Expect = 0.022
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 15 VNSPLVVEENTPPGTI--VSTLEGVDPEGSKVKYGIYGTDR-------FSLDRDSGELRV 65
V P+ + EN+ + + + ++Y + G F ++ SG+L V
Sbjct: 5 VIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 64
Query: 66 AQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTD 103
+PLDRE + + + + I D
Sbjct: 65 TKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 37.1 bits (85), Expect = 4e-04
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 15 VNSPLVVEENTPPGTI--VSTLEGVDPEGSKVKYGIYGTD-------RFSLDRDSGELRV 65
V P+ V EN + ++ +KV Y I G F ++ ++G + V
Sbjct: 3 VIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLV 62
Query: 66 AQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTD 103
+PLDRE + E P ++ I D
Sbjct: 63 TRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 37.1 bits (85), Expect = 4e-04
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
++ E+ G R+ + + +YY + P F I+ TG + +PL
Sbjct: 8 KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
DRE L+ A +G P+ ++T+ ++D
Sbjct: 67 DRE----EYDKYVLSSHAVSE-NGSPV-----EEPMEITINVID 100
Score = 27.4 bits (60), Expect = 1.0
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 74 NSTNTS-TIVLTLEGVDPEGSKVKYGIYGTD-------WFSLDRDSGELRVAQPLYREDG 125
N ++ ++ +KV Y I G F ++ ++G + V +PL RE+
Sbjct: 12 NERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEY 71
Query: 126 HHTSKTNVDIRDG---HHTSKTNVDIRVGD 152
+ + I V D
Sbjct: 72 DKYV-LSSHAVSENGSPVEEPMEITINVID 100
Score = 25.5 bits (55), Expect = 4.7
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 351 QAGTSITTITALDSDGGDYGTGGIVYELLGE 381
+ G + + S+ + + Y + G+
Sbjct: 13 ERGPFPKRLVQIKSNKDRFNK--VYYSITGQ 41
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 37.0 bits (85), Expect = 5e-04
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
E+ G + + + ++Y + T P F+I+ TG LK +PL
Sbjct: 11 SCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPL 69
Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
DRE +L A +G + ++ +T+ D
Sbjct: 70 DRE----RIATYTLFSHAVSS-NGNAV-----EDPMEILITVTD 103
Score = 35.5 bits (81), Expect = 0.002
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 15 VNSPLVVEENTPPGTIVSTLEGVDP---EGSKVKYGIYGTD-------RFSLDRDSGELR 64
V P+ EN G L + + KV Y I G F ++R++G L+
Sbjct: 6 VIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLK 64
Query: 65 VAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTD 103
V +PLDRE +T T + ++ I TD
Sbjct: 65 VTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103
Score = 26.6 bits (58), Expect = 2.2
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 14/86 (16%)
Query: 80 TIVLTLEGVDP---EGSKVKYGIYGTD-------WFSLDRDSGELRVAQPLYREDGHHTS 129
L + + KV Y I G F ++R++G L+V +PL RE +
Sbjct: 19 PFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYT 78
Query: 130 KTNVDIRDGH---HTSKTNVDIRVGD 152
+ + I V D
Sbjct: 79 -LFSHAVSSNGNAVEDPMEILITVTD 103
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 35.4 bits (80), Expect = 0.002
Identities = 8/105 (7%), Positives = 19/105 (18%), Gaps = 36/105 (34%)
Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEK----------- 316
ND+ PV + + + + P + D D+ ++ +
Sbjct: 1 NDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 60
Query: 317 -------------------------LSSSATLIVQVTDVNDNVPS 336
+ V
Sbjct: 61 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIK 105
Score = 32.7 bits (73), Expect = 0.017
Identities = 13/117 (11%), Positives = 25/117 (21%), Gaps = 15/117 (12%)
Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGEL 216
P+ F+ + + P VL + D + + + G
Sbjct: 4 GPVPSPRVFT--MCDQNPEP-QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 60
Query: 217 KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPV 273
P + G S+ V + V T+
Sbjct: 61 MLLSPTQQLK----KGDYSIYVLLSDA--------QNNPQLTVVNATVCSCEGKAIK 105
Score = 25.4 bits (54), Expect = 5.4
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDY 369
NDN P +T + + +T D+D
Sbjct: 1 NDNGPVPSPRVFT--MCDQN---PEPQVLTISDADIPPN 34
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 33.0 bits (75), Expect = 0.066
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 18/96 (18%)
Query: 136 RDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPI-------GSVVL---RVEAK 185
+G D P NS+ E+ P+ G++ + A
Sbjct: 367 FEGQM----WYDHTGDRSTYVP----NSNGDSWSDETGPVDDGWEADGTLTREAQALRAD 418
Query: 186 DGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKP 221
D D Q ++ ++ ++ + +++ G LK +
Sbjct: 419 DDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQ 454
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 30.6 bits (69), Expect = 0.38
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 127 HTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPI-------GSVV 179
+ ++ RDG + D Q P + +SF + + + G V
Sbjct: 375 YRARVANYQRDGPM--------CMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVR 426
Query: 180 LRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKP 221
A D ++ Q R+ Y ++L L ++ G LK A+
Sbjct: 427 RFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQI 468
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.8 bits (62), Expect = 1.6
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 241 REMVDGKPLQEDQATAFA----QVTVTILDVNDSPPVFN 275
E+ + Q++ A Q I + S +N
Sbjct: 42 EEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWN 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.134 0.377
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,435,362
Number of extensions: 67248
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 45
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.1 bits)