BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4205
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L4A|D Chain D, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 87
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 80 DRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRIN 139
D+NG+GP +GY+ +ITNDARE++ME NM +V++MIGNLRNMAIDMG+E+ +QNRQ+DRI
Sbjct: 5 DQNGMGPSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQ 64
Query: 140 RKVKSASFKEDEGTWKG 156
+K +S + DE K
Sbjct: 65 QKAESNESRIDEANKKA 81
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 57/64 (89%)
Query: 226 DRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRIN 285
D+NG+GP +GY+ +ITNDARE++ME NM +V++MIGNLRNMAIDMG+E+ +QNRQ+DRI
Sbjct: 5 DQNGMGPSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQ 64
Query: 286 RKVK 289
+K +
Sbjct: 65 QKAE 68
>pdb|1SFC|D Chain D, Neuronal Synaptic Fusion Complex
pdb|1SFC|H Chain H, Neuronal Synaptic Fusion Complex
pdb|1SFC|L Chain L, Neuronal Synaptic Fusion Complex
Length = 87
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 58/80 (72%)
Query: 77 VMDDRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQID 136
V+D+R + G+I ++TNDARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQID
Sbjct: 1 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID 60
Query: 137 RINRKVKSASFKEDEGTWKG 156
RI K S + DE +
Sbjct: 61 RIMEKADSNKTRIDEANQRA 80
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 53/66 (80%)
Query: 223 VMDDRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQID 282
V+D+R + G+I ++TNDARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQID
Sbjct: 1 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID 60
Query: 283 RINRKV 288
RI K
Sbjct: 61 RIMEKA 66
>pdb|3RK2|D Chain D, Truncated Snare Complex
pdb|3RK2|H Chain H, Truncated Snare Complex
pdb|3RK3|D Chain D, Truncated Snare Complex With Complexin
pdb|3RL0|D Chain D, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|H Chain H, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|L Chain L, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|P Chain P, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|T Chain T, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|X Chain X, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|BB Chain b, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|FF Chain f, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K S + DE +
Sbjct: 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 39/45 (86%)
Query: 244 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K
Sbjct: 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 47
>pdb|3HD7|D Chain D, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|H Chain H, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|D Chain D, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|H Chain H, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 68
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K S + DE +
Sbjct: 5 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 63
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 39/45 (86%)
Query: 244 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K
Sbjct: 5 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 49
>pdb|1N7S|D Chain D, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 66
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K S + DE +
Sbjct: 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 39/45 (86%)
Query: 244 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K
Sbjct: 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 47
>pdb|1KIL|D Chain D, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 43/55 (78%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEG 152
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K S + DE
Sbjct: 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEA 57
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 39/45 (86%)
Query: 244 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K
Sbjct: 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 47
>pdb|1URQ|D Chain D, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 69
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156
+RENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K S + DE +
Sbjct: 6 SRENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 64
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 244 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
+RENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K
Sbjct: 6 SRENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 50
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEG 152
EM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K S + DE
Sbjct: 451 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEA 501
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 248 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRK 287
EM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K
Sbjct: 451 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEK 490
>pdb|1XTG|B Chain B, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH
Synaptosomal-Associated Protein 25
Length = 59
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156
M+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K S + DE +
Sbjct: 1 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 54
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 249 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
M+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K
Sbjct: 1 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 40
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 35/41 (85%)
Query: 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRK 141
+EMEEN+ QV +++GNL++MA+++G+E++ QNRQI RI K
Sbjct: 433 DEMEENLTQVGSILGNLKDMALNIGNEIDAQNRQIKRITDK 473
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 35/41 (85%)
Query: 247 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRK 287
+EMEEN+ QV +++GNL++MA+++G+E++ QNRQI RI K
Sbjct: 433 DEMEENLTQVGSILGNLKDMALNIGNEIDAQNRQIKRITDK 473
>pdb|1L4A|C Chain C, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 83
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 28/31 (90%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39
Q +QLDRIEEG+DQIN DMK+AEKNL GMEK
Sbjct: 53 QGEQLDRIEEGLDQINQDMKDAEKNLEGMEK 83
>pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
Length = 82
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 26/29 (89%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGM 37
Q +QL+RIEEGMDQIN DMKEAEKNLT +
Sbjct: 53 QGEQLERIEEGMDQINKDMKEAEKNLTDL 81
>pdb|1URQ|C Chain C, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
pdb|3HD7|C Chain C, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|G Chain G, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|C Chain C, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|G Chain G, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 80
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39
Q +QLDR+EEGM+ IN DMKEAEKNL + K
Sbjct: 50 QGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 80
>pdb|1N7S|C Chain C, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 79
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39
Q +QLDR+EEGM+ IN DMKEAEKNL + K
Sbjct: 49 QGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79
>pdb|3RK2|C Chain C, Truncated Snare Complex
pdb|3RK2|G Chain G, Truncated Snare Complex
pdb|3RK3|C Chain C, Truncated Snare Complex With Complexin
pdb|3RL0|C Chain C, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|G Chain G, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|K Chain K, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|O Chain O, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|S Chain S, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|W Chain W, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|AA Chain a, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|EE Chain e, Truncated Snare Complex With Complexin (P1)
Length = 81
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 23/26 (88%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNL 34
Q +QLDR+EEGM+ IN DMKEAEKNL
Sbjct: 51 QGEQLDRVEEGMNHINQDMKEAEKNL 76
>pdb|1KIL|C Chain C, Three-Dimensional Structure Of The ComplexinSNARE
COMPLEX
Length = 74
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGM 37
Q +QLDR+EEGM+ IN DMKEAEKNL +
Sbjct: 45 QGEQLDRVEEGMNHINQDMKEAEKNLKDL 73
>pdb|1SFC|C Chain C, Neuronal Synaptic Fusion Complex
pdb|1SFC|G Chain G, Neuronal Synaptic Fusion Complex
pdb|1SFC|K Chain K, Neuronal Synaptic Fusion Complex
Length = 83
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGM 37
Q +QLDR+EEGM+ IN DMKEAEKNL +
Sbjct: 53 QGEQLDRVEEGMNHINQDMKEAEKNLKDL 81
>pdb|1NHL|A Chain A, Snap-23n Structure
Length = 54
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGM 37
Q++QL+RIEEG+DQIN D +E EK LT +
Sbjct: 26 QKEQLNRIEEGLDQINKDXRETEKTLTEL 54
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 68 KVVNNQPQRVMDDRNGLGPQAGYIGKITND 97
K V P ++ + LG +AG+IGKI +D
Sbjct: 41 KYVGGSPANIVIGSSKLGLKAGFIGKIADD 70
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 214 KVVNNQPQRVMDDRNGLGPQAGYIGKITND 243
K V P ++ + LG +AG+IGKI +D
Sbjct: 41 KYVGGSPANIVIGSSKLGLKAGFIGKIADD 70
>pdb|2NWF|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 21 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 80
Query: 292 YRCRYV 297
C ++
Sbjct: 81 GVCTHL 86
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 90 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQID 136
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D
Sbjct: 21 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLD 71
>pdb|2NUM|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 21 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 80
Query: 292 YRCRYV 297
C ++
Sbjct: 81 GVCTHL 86
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 90 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQID 136
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D
Sbjct: 21 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLD 71
>pdb|2NVG|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 21 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 80
Query: 292 YRCRYV 297
C ++
Sbjct: 81 GVCTHL 86
>pdb|2NUK|A Chain A, Soluble Domain Of The Rieske Iron-Sulfur Protein From
Rhodobacter Sphaeroides
Length = 141
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 21 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 80
Query: 292 YRCRYV 297
C ++
Sbjct: 81 GVCTHL 86
>pdb|2NVE|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 21 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 80
Query: 292 YRCRYV 297
C ++
Sbjct: 81 GVCTHL 86
>pdb|2NVF|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 21 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 80
Query: 292 YRCRYV 297
C ++
Sbjct: 81 GVCTHL 86
>pdb|2QJK|C Chain C, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|F Chain F, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|I Chain I, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|L Chain L, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|O Chain O, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|R Chain R, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
Length = 179
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 59 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 118
Query: 292 YRCRYV 297
C ++
Sbjct: 119 GVCTHL 124
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 90 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQID 136
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D
Sbjct: 59 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLD 109
>pdb|2FYN|C Chain C, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|F Chain F, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|I Chain I, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|L Chain L, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|O Chain O, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|R Chain R, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|F Chain F, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|I Chain I, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|L Chain L, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|O Chain O, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|R Chain R, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 187
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 67 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 126
Query: 292 YRCRYV 297
C ++
Sbjct: 127 GVCTHL 132
>pdb|2QJP|C Chain C, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|F Chain F, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|I Chain I, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|L Chain L, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 179
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 236 YIGKITNDARENEMEENMG---QVNTMI-GNLRNMAIDMGSELENQNRQIDRINRKVKFR 291
++GK R E + +G Q+ ++ N RN ID G+E +QNR +D +
Sbjct: 59 FLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 118
Query: 292 YRCRYV 297
C ++
Sbjct: 119 GVCTHL 124
>pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|B Chain B, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|C Chain C, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|D Chain D, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|E Chain E, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|F Chain F, Fragment Of Fusion Protein From Newcastle Disease Virus
Length = 481
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 110 VNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKE 149
++T +GN+ N + +LE N ++D++N K+ S S +E
Sbjct: 432 ISTELGNVNNSISNALDKLEESNSKLDKVNVKLTSTSSRE 471
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,517,828
Number of Sequences: 62578
Number of extensions: 417493
Number of successful extensions: 1049
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 123
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)