Query psy4205
Match_columns 315
No_of_seqs 265 out of 420
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:31:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3065|consensus 100.0 8.4E-35 1.8E-39 274.3 9.8 156 2-157 98-270 (273)
2 KOG3065|consensus 99.8 4.3E-21 9.4E-26 181.5 10.0 150 116-292 90-259 (273)
3 PF00835 SNAP-25: SNAP-25 fami 99.4 5.9E-14 1.3E-18 106.0 0.4 51 194-244 2-61 (61)
4 PF05739 SNARE: SNARE domain; 98.8 1.7E-08 3.6E-13 74.6 6.8 54 102-155 1-54 (63)
5 cd00193 t_SNARE Soluble NSF (N 98.6 1.3E-07 2.9E-12 67.9 6.3 55 101-155 2-56 (60)
6 smart00397 t_SNARE Helical reg 98.5 6.7E-07 1.5E-11 65.1 7.2 59 97-155 4-62 (66)
7 PF00835 SNAP-25: SNAP-25 fami 98.4 8.1E-08 1.7E-12 72.7 0.9 52 47-98 1-61 (61)
8 PF05739 SNARE: SNARE domain; 98.2 4E-06 8.7E-11 61.8 5.4 45 248-292 1-45 (63)
9 cd00193 t_SNARE Soluble NSF (N 97.9 1.7E-05 3.6E-10 56.9 4.7 46 247-292 2-47 (60)
10 KOG3202|consensus 97.9 2.2E-05 4.8E-10 73.7 6.5 55 101-155 148-202 (235)
11 smart00397 t_SNARE Helical reg 97.8 4.1E-05 8.8E-10 55.7 5.4 51 242-292 3-53 (66)
12 KOG3385|consensus 97.1 0.00085 1.8E-08 57.0 4.9 60 96-155 27-86 (118)
13 KOG3385|consensus 97.0 0.00089 1.9E-08 56.9 4.1 50 241-290 26-75 (118)
14 KOG3202|consensus 96.7 0.0023 5E-08 60.3 4.9 47 246-292 147-193 (235)
15 PF12352 V-SNARE_C: Snare regi 96.5 0.0026 5.7E-08 47.6 3.4 37 2-38 27-63 (66)
16 KOG1666|consensus 92.6 0.1 2.2E-06 48.8 3.0 36 3-38 155-190 (220)
17 PF12352 V-SNARE_C: Snare regi 89.4 1.5 3.2E-05 32.6 6.2 50 105-154 8-57 (66)
18 PF09753 Use1: Membrane fusion 85.9 2.5 5.5E-05 39.5 6.9 59 101-159 163-221 (251)
19 PRK00846 hypothetical protein; 80.3 10 0.00022 30.3 7.2 58 99-156 7-64 (77)
20 PF04102 SlyX: SlyX; InterPro 79.0 11 0.00024 28.9 6.9 52 103-154 2-53 (69)
21 COG5325 t-SNARE complex subuni 78.7 3.5 7.6E-05 40.1 4.9 74 102-184 192-265 (283)
22 PRK04325 hypothetical protein; 77.1 22 0.00047 27.8 8.2 53 102-154 6-58 (74)
23 PF03908 Sec20: Sec20; InterP 74.5 3.7 8.1E-05 32.8 3.3 39 2-40 27-65 (92)
24 KOG0810|consensus 73.9 8.7 0.00019 37.6 6.3 51 105-155 206-256 (297)
25 PRK04406 hypothetical protein; 69.3 27 0.00059 27.4 7.0 53 102-154 8-60 (75)
26 PRK00736 hypothetical protein; 67.5 29 0.00062 26.7 6.7 50 104-153 4-53 (68)
27 PRK02793 phi X174 lysis protei 66.4 34 0.00074 26.6 7.0 53 102-154 5-57 (72)
28 PRK02119 hypothetical protein; 63.5 42 0.00091 26.2 7.0 52 102-153 6-57 (73)
29 PRK00295 hypothetical protein; 60.1 77 0.0017 24.3 7.9 51 103-153 3-53 (68)
30 KOG0809|consensus 56.2 18 0.0004 35.6 4.7 81 97-186 210-290 (305)
31 COG5325 t-SNARE complex subuni 55.8 9.1 0.0002 37.3 2.5 32 7-38 219-250 (283)
32 PF05377 FlaC_arch: Flagella a 52.5 53 0.0012 24.7 5.6 41 247-287 3-43 (55)
33 KOG0811|consensus 49.0 60 0.0013 31.5 6.9 53 103-155 178-230 (269)
34 PF04728 LPP: Lipoprotein leuc 48.4 89 0.0019 23.6 6.3 39 102-140 14-52 (56)
35 PF10046 BLOC1_2: Biogenesis o 41.9 98 0.0021 25.2 6.2 45 101-149 38-82 (99)
36 PF05565 Sipho_Gp157: Siphovir 40.2 1.4E+02 0.003 26.4 7.4 56 97-152 32-87 (162)
37 PRK00846 hypothetical protein; 37.8 78 0.0017 25.3 4.9 42 247-288 16-57 (77)
38 PF04102 SlyX: SlyX; InterPro 36.4 1.7E+02 0.0037 22.3 6.4 50 243-292 3-52 (69)
39 PRK09973 putative outer membra 35.2 1.4E+02 0.0031 24.3 6.1 37 103-139 36-72 (85)
40 PF05377 FlaC_arch: Flagella a 34.3 1.7E+02 0.0038 22.0 5.9 39 101-139 3-41 (55)
41 KOG2678|consensus 32.7 1.4E+02 0.0031 28.6 6.5 52 108-159 158-209 (244)
42 PF06120 Phage_HK97_TLTM: Tail 32.7 95 0.0021 30.6 5.6 52 103-154 53-109 (301)
43 PF04728 LPP: Lipoprotein leuc 31.9 1.9E+02 0.0042 21.9 5.8 39 248-286 14-52 (56)
44 PF09753 Use1: Membrane fusion 30.1 1.2E+02 0.0025 28.4 5.6 40 252-291 168-207 (251)
45 KOG0810|consensus 28.9 1.2E+02 0.0026 29.8 5.5 39 252-290 207-245 (297)
46 PRK15344 type III secretion sy 28.3 68 0.0015 25.4 3.0 25 255-279 2-26 (71)
47 PRK06945 flgK flagellar hook-a 28.3 6.6E+02 0.014 27.2 11.4 63 105-174 139-201 (651)
48 PF08651 DASH_Duo1: DASH compl 27.2 78 0.0017 25.1 3.3 37 5-41 2-38 (78)
49 PF05531 NPV_P10: Nucleopolyhe 26.8 1.6E+02 0.0035 23.4 5.0 47 103-149 16-65 (75)
50 PRK04325 hypothetical protein; 25.6 2.3E+02 0.005 22.1 5.6 44 245-288 10-53 (74)
51 PRK11281 hypothetical protein; 24.8 5E+02 0.011 30.2 10.1 55 101-155 124-178 (1113)
52 PF05565 Sipho_Gp157: Siphovir 24.6 1.8E+02 0.0038 25.7 5.4 50 242-291 31-80 (162)
53 PF06103 DUF948: Bacterial pro 23.6 3.6E+02 0.0077 21.0 6.5 29 121-149 46-74 (90)
54 PF01519 DUF16: Protein of unk 23.5 4E+02 0.0087 22.5 6.9 43 109-151 57-99 (102)
55 PF10392 COG5: Golgi transport 23.2 1.5E+02 0.0032 25.2 4.5 48 245-292 73-120 (132)
56 PRK10803 tol-pal system protei 23.1 2.1E+02 0.0046 27.2 6.0 35 121-155 56-90 (263)
57 PRK14011 prefoldin subunit alp 23.0 5.2E+02 0.011 22.7 10.5 50 232-281 77-132 (144)
58 PF08653 DASH_Dam1: DASH compl 22.9 85 0.0018 23.8 2.6 26 2-27 13-38 (58)
59 PRK05683 flgK flagellar hook-a 22.6 1E+03 0.022 26.0 11.8 62 105-174 138-199 (676)
60 KOG0812|consensus 22.5 79 0.0017 31.3 3.0 30 5-34 249-278 (311)
61 PRK15344 type III secretion sy 21.5 1.2E+02 0.0025 24.1 3.2 25 109-133 2-26 (71)
62 PF01452 Rota_NSP4: Rotavirus 21.2 3.3E+02 0.0072 24.8 6.4 52 88-143 83-135 (173)
63 PHA03332 membrane glycoprotein 20.7 2.8E+02 0.006 32.3 6.9 53 97-152 940-1005(1328)
64 KOG2546|consensus 20.6 98 0.0021 32.3 3.3 43 3-45 75-122 (483)
65 PRK08026 flagellin; Validated 20.2 1.9E+02 0.0042 30.7 5.5 48 103-150 78-138 (529)
No 1
>KOG3065|consensus
Probab=100.00 E-value=8.4e-35 Score=274.29 Aligned_cols=156 Identities=32% Similarity=0.493 Sum_probs=129.7
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccccccCCCCCCCccc---ccccccC---CCCCCccCCCCc
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGMEKCCGICVLPCNKSASFKE---DEGTWKG---NDDGKVVNNQPQ 75 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLks~cGlf~~pw~~~k~~e~---~k~~~~~---~e~~~v~ssqP~ 75 (315)
+|++|++|||||+|||++||+|+.||+++||||++|++|||+++|||++++.++. +..+|+. .....+.+.+|.
T Consensus 98 Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g~~~~p~~~~~~~~p~e~~~~~~~~~~~~~~e~~~~~~~~ 177 (273)
T KOG3065|consen 98 TLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFGLLVKPFKKKRVREPTETSLKQRSISKRRMDETLIRAKPG 177 (273)
T ss_pred HHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhcccCCccccCCCCCcchhcccccCcchhhhhHHHHhhhcc
Confidence 6899999999999999999999999999999999999999999999999887665 3344432 222234444443
Q ss_pred --cccCCCC----CCCCCCCCC-----cccCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4205 76 --RVMDDRN----GLGPQAGYI-----GKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKS 144 (315)
Q Consensus 76 --r~~~~~~----~~~~sg~yi-----krit~d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~ 144 (315)
+....+. ..+.+++|+ +.++++++++|||+||++|+.+|++||+||++||+|||+||++||||++|||+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~ 257 (273)
T KOG3065|consen 178 ELRSAAERSPSEKRTGLQGARSSLKARAYQTEPAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDR 257 (273)
T ss_pred cccccccccccccCcCCcccchhhhhhhhccCChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHh
Confidence 2211111 124566777 77889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCC
Q psy4205 145 ASFKEDEGTWKGN 157 (315)
Q Consensus 145 ~d~rI~~aNkr~~ 157 (315)
++.+|+.+|+|++
T Consensus 258 ~d~~v~~~n~R~~ 270 (273)
T KOG3065|consen 258 LDLRVDKANKRAK 270 (273)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999999964
No 2
>KOG3065|consensus
Probab=99.84 E-value=4.3e-21 Score=181.46 Aligned_cols=150 Identities=27% Similarity=0.386 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hhhcccCCCCCccccCCccccccccccceechhhhhhhccc-cc
Q psy4205 116 NLRNMAIDMGSELENQNRQIDRINRKVKSASFKE--DEGTWKGNDDGKVVNNQPQRVMDDRNEVVTYYNFRFLLTLS-HP 192 (315)
Q Consensus 116 rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI--~~aNkr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~p 192 (315)
.-+..|+..-.++..|-++|++|+..+|..+.-+ ..-|-.++.+ ||++| +|
T Consensus 90 e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~--------------------------~~g~~~~p 143 (273)
T KOG3065|consen 90 ESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG--------------------------LFGLLVKP 143 (273)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH--------------------------HhcccCCc
Confidence 4456677888899999999999999999875433 3334444444 78888 88
Q ss_pred CccCCccccccc---Cccc---CCCCCCccccCCc--ccccCCCC----CCCCCcch-----hcccchhHHHHHHHhHHH
Q psy4205 193 FVPRSASFKEDE---GTWK---GNDDGKVVNNQPQ--RVMDDRNG----LGPQAGYI-----GKITNDARENEMEENMGQ 255 (315)
Q Consensus 193 ~~~~~~~~e~~~---~~w~---~~~~~~vvs~qP~--~~~~~~~~----~~~sg~yi-----~~~t~d~~edEmd~nL~~ 255 (315)
|++.+.++... .+|+ ...+..+++.+|. ++...+.. .+.+|+|+ +..+++++|||||+||++
T Consensus 144 -~~~~~~~~p~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~edeiD~NL~q 222 (273)
T KOG3065|consen 144 -FKKKRVREPTETSLKQRSISKRRMDETLIRAKPGELRSAAERSPSEKRTGLQGARSSLKARAYQTEPAAEDEIDENLDQ 222 (273)
T ss_pred -cccCCCCCcchhcccccCcchhhhhHHHHhhhcccccccccccccccCcCCcccchhhhhhhhccCChhhhHHHhhHHH
Confidence 77777776665 4554 4455668888886 44444322 25889999 999999999999999999
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 256 VNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 256 ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
|+.+||+||+||+|||+|||+||++||||++|||..+
T Consensus 223 is~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d 259 (273)
T KOG3065|consen 223 LSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLD 259 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhh
Confidence 9999999999999999999999999999999998765
No 3
>PF00835 SNAP-25: SNAP-25 family; InterPro: IPR000928 SNAP-25 (synaptosome-associated protein 25 kDa) proteins are components of SNARE complexes, which are proposed to account for the specificity of membrane fusion and to directly execute fusion by forming a tight complex (the SNARE or core complex) that brings the synaptic vesicle and plasma membranes together. The SNAREs constitute a large family of proteins that are characterised by 60-residue sequences known as SNARE motifs (IPR000727 from INTERPRO), which have a high propensity to form coiled coils and often precede carboxy-terminal transmembrane regions. The synaptic core complex is formed by four SNARE motifs (two from SNAP25 and one each from synaptobrevin and syntaxin 1) that are unstructured in isolation but form a parallel four-helix bundle on assembly. The crystal structure of the core complex revealed that the helix bundle is highly twisted and contains several salt bridges on the surface, as well as layers of interior hydrophobic residues. However, a polar layer in the centre of the complex is formed by three glutamines (two from SNAP25 and one from syntaxin 1) and one arginine (from synaptobrevin) []. Members of the SNAP-25 family contain a cluster of cysteine residues that can be palmitoylated for membrane attachment [].; PDB: 3RL0_H 3RK2_D 3RK3_D 1KIL_D 1SFC_L 3HD7_H 3IPD_H 1L4A_D.
Probab=99.39 E-value=5.9e-14 Score=106.00 Aligned_cols=51 Identities=59% Similarity=0.996 Sum_probs=7.6
Q ss_pred ccC--Cccccccc---CcccCCCC-CCccccCC-cccccCCCCC--CCCCcchhcccchh
Q psy4205 194 VPR--SASFKEDE---GTWKGNDD-GKVVNNQP-QRVMDDRNGL--GPQAGYIGKITNDA 244 (315)
Q Consensus 194 ~~~--~~~~e~~~---~~w~~~~~-~~vvs~qP-~~~~~~~~~~--~~sg~yi~~~t~d~ 244 (315)
|.| +++||+.+ .||+.+++ |+||++|| +++.++++++ ++||+||+||||||
T Consensus 2 ~~R~~~k~fe~~~~yk~tw~~n~d~g~Vvs~qP~~~v~~~~~~~s~~~sg~YI~RiTnDA 61 (61)
T PF00835_consen 2 CNRLAIKNFEKQKAYKQTWGPNDDDGKVVSSQPRSRVMDDRNQVSAGPSGGYITRITNDA 61 (61)
T ss_dssp -------------------------------------------------SSSS--SS-SH
T ss_pred CcccccccccccchhhhccCCCcccCccccCCCCCccccCCCcccccCCCCcceeccCCC
Confidence 788 99998655 79999999 89999999 8888878888 79999999999997
No 4
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=98.79 E-value=1.7e-08 Score=74.61 Aligned_cols=54 Identities=33% Similarity=0.516 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
|.|+.|+.|+..+.+||.|+.+||.||+.||..||+|.+.++....+|+.++++
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~ 54 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKK 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999886
No 5
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=98.59 E-value=1.3e-07 Score=67.90 Aligned_cols=55 Identities=29% Similarity=0.553 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.+.++.|..|+..+..|+.|+.+|+.||+.|++.||+|.+.++....+++.++++
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999876
No 6
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.47 E-value=6.7e-07 Score=65.15 Aligned_cols=59 Identities=36% Similarity=0.592 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 97 DARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 97 d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.....+.++.|..|+..+..|++|+.+|+.||+.|++.||+|.+.++..+.++..++++
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999875
No 7
>PF00835 SNAP-25: SNAP-25 family; InterPro: IPR000928 SNAP-25 (synaptosome-associated protein 25 kDa) proteins are components of SNARE complexes, which are proposed to account for the specificity of membrane fusion and to directly execute fusion by forming a tight complex (the SNARE or core complex) that brings the synaptic vesicle and plasma membranes together. The SNAREs constitute a large family of proteins that are characterised by 60-residue sequences known as SNARE motifs (IPR000727 from INTERPRO), which have a high propensity to form coiled coils and often precede carboxy-terminal transmembrane regions. The synaptic core complex is formed by four SNARE motifs (two from SNAP25 and one each from synaptobrevin and syntaxin 1) that are unstructured in isolation but form a parallel four-helix bundle on assembly. The crystal structure of the core complex revealed that the helix bundle is highly twisted and contains several salt bridges on the surface, as well as layers of interior hydrophobic residues. However, a polar layer in the centre of the complex is formed by three glutamines (two from SNAP25 and one from syntaxin 1) and one arginine (from synaptobrevin) []. Members of the SNAP-25 family contain a cluster of cysteine residues that can be palmitoylated for membrane attachment [].; PDB: 3RL0_H 3RK2_D 3RK3_D 1KIL_D 1SFC_L 3HD7_H 3IPD_H 1L4A_D.
Probab=98.40 E-value=8.1e-08 Score=72.73 Aligned_cols=52 Identities=62% Similarity=1.092 Sum_probs=7.4
Q ss_pred CCCC--CCCccc---ccccccCCCC-CCccCCCC-ccccCCCCCC--CCCCCCCcccCchH
Q psy4205 47 PCNK--SASFKE---DEGTWKGNDD-GKVVNNQP-QRVMDDRNGL--GPQAGYIGKITNDA 98 (315)
Q Consensus 47 pw~~--~k~~e~---~k~~~~~~e~-~~v~ssqP-~r~~~~~~~~--~~sg~yikrit~d~ 98 (315)
||++ .++|++ |+.+|+.+++ ++|+++|| .++.+.++.+ .++|+||+|||||+
T Consensus 1 P~~R~~~k~fe~~~~yk~tw~~n~d~g~Vvs~qP~~~v~~~~~~~s~~~sg~YI~RiTnDA 61 (61)
T PF00835_consen 1 PCNRLAIKNFEKQKAYKQTWGPNDDDGKVVSSQPRSRVMDDRNQVSAGPSGGYITRITNDA 61 (61)
T ss_dssp --------------------------------------------------SSSS--SS-SH
T ss_pred CCcccccccccccchhhhccCCCcccCccccCCCCCccccCCCcccccCCCCcceeccCCC
Confidence 6888 888875 8999998877 78999999 6665545555 68999999999986
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=98.16 E-value=4e-06 Score=61.84 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=41.6
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 248 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 248 Emd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
|.++.|+.|+..+.+|+.|+.+||.||+.||..||+|...++...
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999987654
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=97.92 E-value=1.7e-05 Score=56.95 Aligned_cols=46 Identities=33% Similarity=0.585 Sum_probs=42.2
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 247 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 247 dEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
.|.++.|..|+..+..|+.|+.+||.||+.|+..||+|...++...
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~ 47 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNAD 47 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999987654
No 10
>KOG3202|consensus
Probab=97.91 E-value=2.2e-05 Score=73.66 Aligned_cols=55 Identities=25% Similarity=0.465 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.|.|+.|+.|++.+++||+||..||+|++.|+..||.+...+|..+.|+...-++
T Consensus 148 ~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~ 202 (235)
T KOG3202|consen 148 QEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKR 202 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999888776
No 11
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.83 E-value=4.1e-05 Score=55.66 Aligned_cols=51 Identities=39% Similarity=0.609 Sum_probs=46.7
Q ss_pred chhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 242 NDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 242 ~d~~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
...+..|-++.|..++..+..|+.|+.+||.||+.|+..|++|...++...
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~ 53 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDAD 53 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456788899999999999999999999999999999999999999987654
No 12
>KOG3385|consensus
Probab=97.08 E-value=0.00085 Score=56.98 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 96 NDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 96 ~d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.+..|.|=|+.++.|.+=++.||.++++||.||+.||+.||.+.++.|....-+.++=.|
T Consensus 27 ~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r 86 (118)
T KOG3385|consen 27 LASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGR 86 (118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHH
Confidence 344557778999999999999999999999999999999999999999988777665544
No 13
>KOG3385|consensus
Probab=96.97 E-value=0.00089 Score=56.86 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=45.0
Q ss_pred cchhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccc
Q psy4205 241 TNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKF 290 (315)
Q Consensus 241 t~d~~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~ 290 (315)
..+..|.|=|+.++.|.+=++.||.++++||.||+.||+.||.+.++-|+
T Consensus 26 ~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfds 75 (118)
T KOG3385|consen 26 HLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDS 75 (118)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhh
Confidence 45666788889999999999999999999999999999999999988664
No 14
>KOG3202|consensus
Probab=96.68 E-value=0.0023 Score=60.29 Aligned_cols=47 Identities=28% Similarity=0.495 Sum_probs=41.8
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 246 ENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 246 edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
=.|=|+-|+.|+..+++||+||..||+|++.||..||.+..-+|...
T Consensus 147 ~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~ 193 (235)
T KOG3202|consen 147 LQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTE 193 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999888776554
No 15
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=96.54 E-value=0.0026 Score=47.60 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=35.0
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGME 38 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLk 38 (315)
++.+|..|+|+|.+++..+++|+..+..|.+.|..|.
T Consensus 27 ~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 27 TLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4689999999999999999999999999999999886
No 16
>KOG1666|consensus
Probab=92.57 E-value=0.1 Score=48.80 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=34.6
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Q psy4205 3 YSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGME 38 (315)
Q Consensus 3 l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLk 38 (315)
|..||.|+|||.|++.+|-++|.+|..|-|-|++|.
T Consensus 155 L~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~ 190 (220)
T KOG1666|consen 155 LEDLHGQREQLERARERLRETDANLGKSRKILTTMT 190 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 578999999999999999999999999999999997
No 17
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=89.37 E-value=1.5 Score=32.64 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 105 ENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 105 ~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
+.|..--.++.....+|.+.-.++..|+++|.++..|++..+..+..+|+
T Consensus 8 ~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~ 57 (66)
T PF12352_consen 8 DSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNS 57 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666677778888999999999999999999999999999999988775
No 18
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=85.86 E-value=2.5 Score=39.54 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCC
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKGNDD 159 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~~~~ 159 (315)
.+.|+=-++|.++...||.-|..|++-|..-++.|++....+|.+-..++.++.|-..+
T Consensus 163 ~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 163 NLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677899999999999999999999999999999999999999999999985444
No 19
>PRK00846 hypothetical protein; Provisional
Probab=80.31 E-value=10 Score=30.27 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy4205 99 RENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156 (315)
Q Consensus 99 ~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~ 156 (315)
+..++++-|++|..-|.-....--.++..|-+|...|+++...+..+..|++...-.+
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5567889999999989888999999999999999999999999999999998876443
No 20
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.03 E-value=11 Score=28.90 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
+++-|.+|..-|.-+-..--.++..|-+|.+.|+++...+..+..|+.....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666666666666666677777888888888888888888888777653
No 21
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=78.70 E-value=3.5 Score=40.09 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCCCccccCCccccccccccceech
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNEVVTYY 181 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (315)
|-++++..|..++-.|..+=.|||+=+-.|-.++|||...++...+.++.||+.= +-+.--|+++..|+-+
T Consensus 192 er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL---------~kA~~hqrrt~k~~~~ 262 (283)
T COG5325 192 ERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKEL---------EKAPAHQRRTKKCRFY 262 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHH---------HHhHHHHhhhccchhh
Confidence 4589999999999999999999999999999999999999999999999999861 1122336677777655
Q ss_pred hhh
Q psy4205 182 NFR 184 (315)
Q Consensus 182 ~~~ 184 (315)
-+=
T Consensus 263 ~Ll 265 (283)
T COG5325 263 LLL 265 (283)
T ss_pred HHH
Confidence 433
No 22
>PRK04325 hypothetical protein; Provisional
Probab=77.13 E-value=22 Score=27.83 Aligned_cols=53 Identities=9% Similarity=0.214 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
.|++-|.+|..-|.-+...--.++..|-.|.++|+++...+..+..|++...-
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36666788888888888888888999999999999999999999888887653
No 23
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=74.52 E-value=3.7 Score=32.80 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=36.5
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGMEKC 40 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLks~ 40 (315)
++.+|.+|.++|..++...+.++.-|..|.|.|+.|++-
T Consensus 27 t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~ 65 (92)
T PF03908_consen 27 TLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERR 65 (92)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999863
No 24
>KOG0810|consensus
Probab=73.88 E-value=8.7 Score=37.62 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 105 ENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 105 ~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
+++-.|...|..|+.|=+||...+++|-+.||+|...|.....-+..++..
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~ 256 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDH 256 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999988888776654
No 25
>PRK04406 hypothetical protein; Provisional
Probab=69.31 E-value=27 Score=27.44 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
.+++-|.+|..-|.-+-..--.++..|-+|.++|+++...+..+..|+....-
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57888888888888888888899999999999999999999999888877653
No 26
>PRK00736 hypothetical protein; Provisional
Probab=67.51 E-value=29 Score=26.71 Aligned_cols=50 Identities=10% Similarity=0.218 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy4205 104 EENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153 (315)
Q Consensus 104 D~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aN 153 (315)
++-|.+|..-|.-+-..--.++..|-+|.++|+++...+..+..|+....
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666666666666677788889999999999999988888887754
No 27
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.40 E-value=34 Score=26.59 Aligned_cols=53 Identities=4% Similarity=0.117 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
++++-|.+|..-|.-+-..--.++..|-+|.++|+++...+..+..|++...-
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36677778888777888888888889999999999999999888888877643
No 28
>PRK02119 hypothetical protein; Provisional
Probab=63.50 E-value=42 Score=26.19 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aN 153 (315)
.+++-|.+|..-|.-+-..--.++..|-+|.++|+++...+..+..|++...
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677778888877778888888888999999999999999998888887754
No 29
>PRK00295 hypothetical protein; Provisional
Probab=60.06 E-value=77 Score=24.35 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aN 153 (315)
+++-|.+|..-|.-+...--.++..|-+|.++|+++...+..+..|++...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666666677788888888888888888888888887765
No 30
>KOG0809|consensus
Probab=56.16 E-value=18 Score=35.58 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCCCccccCCcccccccccc
Q psy4205 97 DARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNE 176 (315)
Q Consensus 97 d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~~~~~~~~~~~~~~~~~~~~~ 176 (315)
++.-.|=|....+|..++..|..+=.||+.=|=.|--.||||...++....++.+|++.=. -+.--|+.+.
T Consensus 210 ~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~---------KAe~yQk~~~ 280 (305)
T KOG0809|consen 210 EEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELH---------KAERYQKRNK 280 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHH---------HHHHHHhcCC
Confidence 3334455778999999999999999999999999999999999999999999999998611 1334566677
Q ss_pred ceechhhhhh
Q psy4205 177 VVTYYNFRFL 186 (315)
Q Consensus 177 ~~~~~~~~~~ 186 (315)
.|.+.-+=|+
T Consensus 281 k~~~i~~L~l 290 (305)
T KOG0809|consen 281 KMKVILMLTL 290 (305)
T ss_pred ceEehHHHHH
Confidence 7776654443
No 31
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=55.81 E-value=9.1 Score=37.32 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Q psy4205 7 EGQEKQLDRIEEGMDQINADMKEAEKNLTGME 38 (315)
Q Consensus 7 ~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLk 38 (315)
.+||++.+||+.++++++-+|+-|.|.|..--
T Consensus 219 ~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~ 250 (283)
T COG5325 219 GEQGELVDRIDFNIENTSDNLKNANKELEKAP 250 (283)
T ss_pred HHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhH
Confidence 58999999999999999999999999987554
No 32
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.53 E-value=53 Score=24.73 Aligned_cols=41 Identities=10% Similarity=0.319 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhc
Q psy4205 247 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRK 287 (315)
Q Consensus 247 dEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k 287 (315)
+|||..|..+++.++.++.--.+++.+|+.=++-+.++..=
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999888877766543
No 33
>KOG0811|consensus
Probab=48.98 E-value=60 Score=31.48 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
=++.+.+|...+..|..|=.+||.=+..|-..+|.|.+.++....-+..+|+.
T Consensus 178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~ 230 (269)
T KOG0811|consen 178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTEN 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 35778888999999999999999999999999999999999999999888875
No 34
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.41 E-value=89 Score=23.63 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINR 140 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~ 140 (315)
++..-.++|++-+.-|+.=+.+--.|..+.|..||.+..
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 456777888888888888888888899999998888753
No 35
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.94 E-value=98 Score=25.16 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKE 149 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI 149 (315)
.+|.+....|+.-+..|+.. ..+++.+-++||.|...|..+..-+
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k----~~~l~~~l~~Id~Ie~~V~~LE~~v 82 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQK----YEELQPYLQQIDQIEEQVTELEQTV 82 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777764 4678888889999988888776543
No 36
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=40.19 E-value=1.4e+02 Score=26.36 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy4205 97 DARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEG 152 (315)
Q Consensus 97 d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~a 152 (315)
+..+.++++-++.+...+.+|...+-.+-.|+.+-...-..+..+++.+...+..+
T Consensus 32 e~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 32 ESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999987777554
No 37
>PRK00846 hypothetical protein; Provisional
Probab=37.83 E-value=78 Score=25.25 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcc
Q psy4205 247 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288 (315)
Q Consensus 247 dEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~ 288 (315)
+++|.-|.-....|..|+..-.....+|+..-.+|..+.++.
T Consensus 16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 16 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555544445555555555555444443
No 38
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.38 E-value=1.7e+02 Score=22.29 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=39.7
Q ss_pred hhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 243 DARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 243 d~~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
++|=.++|.-|.-.-..|..|...-.....+|++..++|..+..+...+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34557888889999999999999999999999999999999998887665
No 39
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.18 E-value=1.4e+02 Score=24.28 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRIN 139 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~ 139 (315)
+...-++++.-+..++.-|..--.|-++-|..||.+.
T Consensus 36 L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 36 LNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3444445555555555555555555555555555543
No 40
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.30 E-value=1.7e+02 Score=22.00 Aligned_cols=39 Identities=10% Similarity=0.355 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRIN 139 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~ 139 (315)
+|++..|..++..++.+|.---++..+|+.=++-+.++-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888887766666666666555554443
No 41
>KOG2678|consensus
Probab=32.72 E-value=1.4e+02 Score=28.55 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=46.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCC
Q psy4205 108 GQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKGNDD 159 (315)
Q Consensus 108 d~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~~~~ 159 (315)
..|....+-||.+|++-++-|+.=|..+.+...-+|.|-..+..++.|=..|
T Consensus 158 esll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y 209 (244)
T KOG2678|consen 158 ESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKY 209 (244)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 3488888999999999999999999999999999999999999988874433
No 42
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=32.70 E-value=95 Score=30.65 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 103 MEENMGQVNTMIG-----NLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 103 mD~NLd~ls~~L~-----rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
+-++|++|..-+. .|+...-.+...|+.|++.|+.+..+++.+...|...+.
T Consensus 53 fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 53 FADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555333 566677789999999999999999999999888865543
No 43
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.90 E-value=1.9e+02 Score=21.86 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhh
Q psy4205 248 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINR 286 (315)
Q Consensus 248 Emd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~ 286 (315)
++..-.++|++-+.-|+.=+.+--.|..+.|..||.|-.
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 345566777777777777777888899999999998753
No 44
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=30.13 E-value=1.2e+02 Score=28.43 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhccccc
Q psy4205 252 NMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFR 291 (315)
Q Consensus 252 nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~ 291 (315)
=-++|.++..+||.-|..|++-|..-++-|++....++.-
T Consensus 168 L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n 207 (251)
T PF09753_consen 168 LTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRN 207 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888999999999999999999999998887643
No 45
>KOG0810|consensus
Probab=28.93 E-value=1.2e+02 Score=29.83 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccc
Q psy4205 252 NMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKF 290 (315)
Q Consensus 252 nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~ 290 (315)
++-.|-..|..|..|=+||...+++|-..||+|..-|..
T Consensus 207 ~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~ 245 (297)
T KOG0810|consen 207 EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVEN 245 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 677888899999999999999999999999999987643
No 46
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=28.28 E-value=68 Score=25.36 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=21.3
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHhH
Q psy4205 255 QVNTMIGNLRNMAIDMGSELENQNR 279 (315)
Q Consensus 255 ~ls~~lg~Lk~mA~dmg~Eid~QN~ 279 (315)
+++.+++.|+.+|.++|+++..+=.
T Consensus 2 ~i~~~~~~L~~~~~~~~q~vq~~m~ 26 (71)
T PRK15344 2 DIAQLVDMLSHMAHQAGQAINDKMN 26 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999987643
No 47
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.28 E-value=6.6e+02 Score=27.25 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCCCccccCCcccccccc
Q psy4205 105 ENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDR 174 (315)
Q Consensus 105 ~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~~~~~~~~~~~~~~~~~~~ 174 (315)
.-.+.+..+-.+|..+-.+.+.||+.+=.+|..|-..+..++.+|..+..- -+..|.+.++.+
T Consensus 139 ~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~~~~-------~g~~~ndLlDqR 201 (651)
T PRK06945 139 TLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKAESS-------QGQPPNDLLDQR 201 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CCCCcchhHHHH
Confidence 333445555567888888899999999999999999999999999765311 134588887777
No 48
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=27.23 E-value=78 Score=25.10 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHhhccccccc
Q psy4205 5 SQEGQEKQLDRIEEGMDQINADMKEAEKNLTGMEKCC 41 (315)
Q Consensus 5 eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLks~c 41 (315)
.|.+.-+||++|-..+..++..|+.|..+++.+...|
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~ 38 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETV 38 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999999999999998666
No 49
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.76 E-value=1.6e+02 Score=23.44 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy4205 103 MEENMGQVNTMIGNLRNMAID---MGSELENQNRQIDRINRKVKSASFKE 149 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~d---Mg~EId~QN~~LDrI~~Kvd~~d~rI 149 (315)
+++-.+.+...+..|+.---+ +..-||.|..+|+.|+.++.....-+
T Consensus 16 vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 16 VDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555543333 78889999999999999998866543
No 50
>PRK04325 hypothetical protein; Provisional
Probab=25.62 E-value=2.3e+02 Score=22.07 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=27.0
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcc
Q psy4205 245 RENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288 (315)
Q Consensus 245 ~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~ 288 (315)
|=.++|.-|.-....|..|...-.....+|+...++|..+..+.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666665544
No 51
>PRK11281 hypothetical protein; Provisional
Probab=24.78 E-value=5e+02 Score=30.21 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.+++..|.++...|.....---+.++++-+++.+.+|......++..|+...+++
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~ 178 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNL 178 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4478888888888888888888889999999999999999988888898888865
No 52
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=24.60 E-value=1.8e+02 Score=25.72 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=42.6
Q ss_pred chhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhccccc
Q psy4205 242 NDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFR 291 (315)
Q Consensus 242 ~d~~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~ 291 (315)
=+..++++++-++.+..++.+|...+-.+-.|+.+-...-..+..+++..
T Consensus 31 Le~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~L 80 (162)
T PF05565_consen 31 LESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRL 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999988877777776543
No 53
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.56 E-value=3.6e+02 Score=21.00 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy4205 121 AIDMGSELENQNRQIDRINRKVKSASFKE 149 (315)
Q Consensus 121 A~dMg~EId~QN~~LDrI~~Kvd~~d~rI 149 (315)
...+..=+..+|..+++++.|.+..+.-+
T Consensus 46 ~~e~~~ll~~~n~l~~dv~~k~~~v~~~~ 74 (90)
T PF06103_consen 46 TKEINDLLHNTNELLEDVNEKLEKVDPVF 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444555666666666655555433
No 54
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=23.51 E-value=4e+02 Score=22.49 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=25.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy4205 109 QVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDE 151 (315)
Q Consensus 109 ~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~ 151 (315)
.++..+..+=.--..+..|++.|.+.|+.|..-....+.|+..
T Consensus 57 kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 57 KLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334333343444455566667778887777777777766653
No 55
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=23.16 E-value=1.5e+02 Score=25.19 Aligned_cols=48 Identities=10% Similarity=0.216 Sum_probs=38.1
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 245 RENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 245 ~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
.-++|...+..|...+.+|+.--++==.+|..+..+|.+++.-++-.-
T Consensus 73 ~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR 120 (132)
T PF10392_consen 73 VLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLR 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788888888888888888888889999999999887665443
No 56
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.13 E-value=2.1e+02 Score=27.19 Aligned_cols=35 Identities=9% Similarity=0.296 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 121 AIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 121 A~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
-++|...|+.....|++|...++.+...|...-+|
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444445555555555555555444444444444
No 57
>PRK14011 prefoldin subunit alpha; Provisional
Probab=23.04 E-value=5.2e+02 Score=22.70 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCcchhcccchhHH------HHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhh
Q psy4205 232 PQAGYIGKITNDARE------NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQI 281 (315)
Q Consensus 232 ~sg~yi~~~t~d~~e------dEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~l 281 (315)
++|=|+-....+|.+ .+++.++..+...|..+......+..+++..=.++
T Consensus 77 GtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~ 132 (144)
T PRK14011 77 GSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAI 132 (144)
T ss_pred cCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888887776 78889999999999999999999988888775554
No 58
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.94 E-value=85 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.1
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHH
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADM 27 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DL 27 (315)
++.+|+.+=++|.+||+.|++-|.-.
T Consensus 13 ~~~~L~~n~~~L~~ihesL~~FNESF 38 (58)
T PF08653_consen 13 SMETLDKNMEQLNQIHESLSDFNESF 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999998877644
No 59
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.59 E-value=1e+03 Score=25.99 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCCCccccCCcccccccc
Q psy4205 105 ENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDR 174 (315)
Q Consensus 105 ~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~~~~~~~~~~~~~~~~~~~ 174 (315)
.--+.+..+-.+|..|-.+++.||+.+=.+|..+..++..++.+|..+-.. |..|.+.++.+
T Consensus 138 ~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~--------G~~~NdLlDqR 199 (676)
T PRK05683 138 GLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQASAS--------GATPNDLLDAR 199 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCCchHhHHHH
Confidence 333444555557788888899999999999999999999999999765322 35688888777
No 60
>KOG0812|consensus
Probab=22.51 E-value=79 Score=31.29 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHhh
Q psy4205 5 SQEGQEKQLDRIEEGMDQINADMKEAEKNL 34 (315)
Q Consensus 5 eL~eQGEQL~Rte~~LD~In~DLk~aEK~L 34 (315)
+.-+|||-+.||+.++|++.-+..-|...|
T Consensus 249 mVseQ~E~i~RID~nv~ds~lnI~gA~~el 278 (311)
T KOG0812|consen 249 MVSEQEETIQRIDDNVDDSDLNIEGAHSEL 278 (311)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHH
No 61
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=21.49 E-value=1.2e+02 Score=24.08 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=21.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4205 109 QVNTMIGNLRNMAIDMGSELENQNR 133 (315)
Q Consensus 109 ~ls~~L~rLK~mA~dMg~EId~QN~ 133 (315)
++++.++.|+++|.++|.++..+=.
T Consensus 2 ~i~~~~~~L~~~~~~~~q~vq~~m~ 26 (71)
T PRK15344 2 DIAQLVDMLSHMAHQAGQAINDKMN 26 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788899999999999999977543
No 62
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=21.25 E-value=3.3e+02 Score=24.81 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCCCccc-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4205 88 AGYIGKI-TNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVK 143 (315)
Q Consensus 88 g~yikri-t~d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd 143 (315)
.+|..++ +.|+.|.+||.-+-+|-. +|+..-.---.||+ |-+.|.||.++.-
T Consensus 83 aGykeqittkDeie~qmdrivkemrr---QlemidkLTtREiE-QVeLLkrI~d~Li 135 (173)
T PF01452_consen 83 AGYKEQITTKDEIEKQMDRIVKEMRR---QLEMIDKLTTREIE-QVELLKRIYDMLI 135 (173)
T ss_dssp ------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hcccccCCcHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHH-HHHHHHHHHHHhc
Confidence 3455454 467778878877777776 44444444456775 8899999998753
No 63
>PHA03332 membrane glycoprotein; Provisional
Probab=20.67 E-value=2.8e+02 Score=32.29 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHH------HHHHHHhhhhhhhhhhhhh
Q psy4205 97 DARENEMEENMGQVNTMIGNLRNMAID-------MGSELENQNR------QIDRINRKVKSASFKEDEG 152 (315)
Q Consensus 97 d~~e~EmD~NLd~ls~~L~rLK~mA~d-------Mg~EId~QN~------~LDrI~~Kvd~~d~rI~~a 152 (315)
+..++|++.++.++.. +++.+|.. .+.+|++|+. ||..+...+.....|+..+
T Consensus 940 s~Led~VN~r~~~v~~---~intLA~ql~~~~~~~N~~ie~~~aaalyYQQlnsltnqv~~saskL~~q 1005 (1328)
T PHA03332 940 SDLEDQVNLRFLAVAT---NFNTLATQLKELGTTTNERIEEVMAAALYYQQLNSLTNQVTQSASKLGYQ 1005 (1328)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 64
>KOG2546|consensus
Probab=20.57 E-value=98 Score=32.26 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=38.3
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHH-----HHHHHhhccccccccccc
Q psy4205 3 YSSQEGQEKQLDRIEEGMDQINADM-----KEAEKNLTGMEKCCGICV 45 (315)
Q Consensus 3 l~eL~eQGEQL~Rte~~LD~In~DL-----k~aEK~L~sLks~cGlf~ 45 (315)
|.+|+.|.-||.+.|..++.|-++. +.|-+.|+.|...+|++.
T Consensus 75 l~mL~lQ~~~L~~mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r 122 (483)
T KOG2546|consen 75 LRMLDLQAPQLRYMESQVNHISQTVDIHKEKVARREIGNLTTNKGLSR 122 (483)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhheecchhhhhhhccceeecccccc
Confidence 5789999999999999999999876 578889999999988875
No 65
>PRK08026 flagellin; Validated
Probab=20.20 E-value=1.9e+02 Score=30.66 Aligned_cols=48 Identities=15% Similarity=0.356 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4205 103 MEENMGQVNTMIGNLRNMAID-------------MGSELENQNRQIDRINRKVKSASFKED 150 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~d-------------Mg~EId~QN~~LDrI~~Kvd~~d~rI~ 150 (315)
.|..|++|++.|.|+|.+++- +..||..--++|++|.+.+.-+..+|-
T Consensus 78 AE~aL~~i~d~LqRmrELaVqAaNGT~S~~DR~aiq~Ei~qL~~eI~~ia~~T~fNG~~ll 138 (529)
T PRK08026 78 TEGALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVL 138 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEec
Confidence 589999999999999999984 567999999999999988766655554
Done!