Query psy4205
Match_columns 315
No_of_seqs 265 out of 420
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:31:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l4a_D S-SNAP25 fusion protein 99.8 2.4E-19 8E-24 142.4 7.5 74 83-156 8-81 (87)
2 1sfc_D Protein (SNAP-25B), pro 99.8 1E-18 3.4E-23 138.5 8.2 74 83-156 7-80 (87)
3 1l4a_D S-SNAP25 fusion protein 99.8 4.6E-19 1.6E-23 140.8 5.6 67 227-293 6-72 (87)
4 1sfc_D Protein (SNAP-25B), pro 99.8 7.5E-19 2.6E-23 139.2 5.9 68 226-293 4-71 (87)
5 3b5n_D Protein transport prote 99.7 3.8E-18 1.3E-22 128.6 7.3 60 96-155 1-60 (64)
6 3b5n_D Protein transport prote 99.6 1.3E-16 4.5E-21 120.2 5.2 53 242-294 1-53 (64)
7 1n7s_D SNAP-25A; neuronal snar 99.6 3.7E-15 1.3E-19 111.9 6.9 61 96-156 1-61 (66)
8 1n7s_D SNAP-25A; neuronal snar 99.3 6.5E-13 2.2E-17 99.6 5.2 52 242-293 1-52 (66)
9 1gl2_D Syntaxin 8, vesicle tra 99.3 2E-12 6.9E-17 96.6 5.6 56 101-156 5-60 (65)
10 2nps_D Syntaxin-6; vesicle fus 99.2 1.4E-11 4.8E-16 96.2 4.6 55 101-155 15-69 (82)
11 1l4a_C S-SNAP25 fusion protein 99.1 4.3E-11 1.5E-15 94.4 2.2 38 2-39 46-83 (83)
12 3b5n_C Protein transport prote 99.0 1.3E-10 4.3E-15 89.1 3.3 39 2-40 31-69 (70)
13 1nhl_A Synaptosomal-associated 99.0 2.2E-10 7.5E-15 83.3 4.0 36 2-37 19-54 (54)
14 1gl2_D Syntaxin 8, vesicle tra 98.9 1.1E-09 3.8E-14 81.7 4.2 46 247-292 5-50 (65)
15 1n7s_C SNAP-25A; neuronal snar 98.8 1.5E-09 5E-14 84.7 3.6 38 2-39 42-79 (79)
16 2nps_D Syntaxin-6; vesicle fus 98.7 6.8E-09 2.3E-13 80.9 3.2 46 247-292 15-60 (82)
17 1gl2_C VTI1B, vesicle transpor 98.0 4E-06 1.4E-10 62.8 4.2 37 2-38 28-64 (65)
18 2nps_C Vesicle transport throu 97.3 0.00019 6.6E-09 55.8 4.0 37 3-39 39-75 (81)
19 3hd7_B Syntaxin-1A; membrane p 95.0 0.059 2E-06 43.6 6.9 54 102-155 18-71 (109)
20 2nps_B Syntaxin 13, vesicle-as 91.9 0.46 1.6E-05 35.3 6.6 52 104-155 5-56 (71)
21 1jth_B Syntaxin 1A; coiled-coi 91.2 0.73 2.5E-05 34.7 7.1 53 103-155 8-60 (77)
22 1gl2_B Syntaxin 7; membrane pr 90.9 0.71 2.4E-05 33.9 6.6 51 105-155 9-59 (65)
23 3b5n_B Protein SSO1; snare com 90.5 0.98 3.4E-05 33.4 7.1 53 103-155 8-60 (69)
24 1n7s_B Syntaxin 1A; neuronal s 89.4 1.3 4.6E-05 32.5 7.1 53 103-155 10-62 (68)
25 1sfc_B Protein (syntaxin 1A), 88.9 1.1 3.9E-05 34.2 6.6 53 103-155 19-71 (83)
26 2nps_B Syntaxin 13, vesicle-as 86.3 0.78 2.7E-05 34.1 4.2 32 6-37 29-60 (71)
27 1gl2_B Syntaxin 7; membrane pr 85.8 0.88 3E-05 33.3 4.2 31 6-36 32-62 (65)
28 1n7s_B Syntaxin 1A; neuronal s 84.4 1 3.6E-05 33.1 4.0 30 6-35 35-64 (68)
29 3b5n_B Protein SSO1; snare com 84.2 1.1 3.9E-05 33.1 4.2 31 6-36 33-63 (69)
30 1jth_B Syntaxin 1A; coiled-coi 83.2 1.3 4.3E-05 33.4 4.2 33 6-38 33-65 (77)
31 1sfc_B Protein (syntaxin 1A), 79.9 1.9 6.6E-05 32.9 4.2 31 6-36 44-74 (83)
32 3hd7_B Syntaxin-1A; membrane p 77.4 2.9 9.8E-05 33.6 4.7 45 248-292 18-62 (109)
33 1nhl_A Synaptosomal-associated 76.9 5 0.00017 28.4 5.3 42 113-154 8-49 (54)
34 3efg_A Protein SLYX homolog; x 70.4 12 0.00041 28.6 6.4 55 101-155 10-64 (78)
35 1n7s_C SNAP-25A; neuronal snar 61.9 23 0.00078 26.9 6.5 39 116-154 34-72 (79)
36 1gl2_C VTI1B, vesicle transpor 58.4 27 0.00094 25.3 6.2 49 106-154 10-58 (65)
37 1l4a_C S-SNAP25 fusion protein 57.9 24 0.00083 27.2 6.0 51 105-155 24-77 (83)
38 1dn1_B Syntaxin 1A, syntaxin b 49.7 10 0.00036 34.5 3.2 52 104-155 199-250 (267)
39 3c98_B Syntaxin-1A; protein co 45.4 17 0.00057 31.5 3.7 53 102-154 209-261 (279)
40 2nps_C Vesicle transport throu 42.8 62 0.0021 24.5 6.2 50 105-154 19-68 (81)
41 3b5n_C Protein transport prote 38.6 53 0.0018 24.5 5.1 40 116-155 23-62 (70)
42 2xhe_B Syntaxin1; exocytosis, 37.2 6.9 0.00024 35.6 -0.1 52 104-155 216-267 (279)
43 3c98_B Syntaxin-1A; protein co 24.7 74 0.0025 27.3 4.4 47 247-293 208-254 (279)
44 1m1j_C Fibrinogen gamma chain; 23.3 4.5E+02 0.015 25.5 10.1 99 11-150 38-136 (409)
45 3p8c_F ABL interactor 2; actin 23.0 2.9E+02 0.0099 23.7 7.7 51 103-153 52-102 (159)
No 1
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.78 E-value=2.4e-19 Score=142.44 Aligned_cols=74 Identities=58% Similarity=0.940 Sum_probs=69.7
Q ss_pred CCCCCCCCCcccCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy4205 83 GLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156 (315)
Q Consensus 83 ~~~~sg~yikrit~d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~ 156 (315)
+.+++|+|+++++++++++|+|++|++||.+|++||+||++||+||++||+.||+|.+++|.++.||+.+|+|.
T Consensus 8 ~~~~~~~~i~~~~~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 8 GMGPSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp ---CCSSSSCCSSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred CCCCCchHHhccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999984
No 2
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.76 E-value=1e-18 Score=138.49 Aligned_cols=74 Identities=51% Similarity=0.800 Sum_probs=67.9
Q ss_pred CCCCCCCCCcccCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy4205 83 GLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156 (315)
Q Consensus 83 ~~~~sg~yikrit~d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~ 156 (315)
..+++|+|++++++|+++.|+|++|++|+..|++||+||++||+||+.||+.||+|.+++|.++.||+.+|+|.
T Consensus 7 ~~~~s~~yi~~~~~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl 80 (87)
T 1sfc_D 7 QMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 80 (87)
T ss_dssp -----CCCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999984
No 3
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.76 E-value=4.6e-19 Score=140.78 Aligned_cols=67 Identities=60% Similarity=0.993 Sum_probs=60.1
Q ss_pred CCCCCCCCcchhcccchhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhccccccc
Q psy4205 227 RNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRYR 293 (315)
Q Consensus 227 ~~~~~~sg~yi~~~t~d~~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~~ 293 (315)
+++++++|+||+++++|++|+|+|++|++|+++|++||+||++||+||++||+.||+|..|+|.+..
T Consensus 6 ~~~~~~~~~~i~~~~~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~ 72 (87)
T 1l4a_D 6 QNGMGPSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNES 72 (87)
T ss_dssp -----CCSSSSCCSSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccCCCCCchHHhccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999999999999999999999988754
No 4
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.75 E-value=7.5e-19 Score=139.21 Aligned_cols=68 Identities=53% Similarity=0.840 Sum_probs=58.2
Q ss_pred CCCCCCCCCcchhcccchhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhccccccc
Q psy4205 226 DRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRYR 293 (315)
Q Consensus 226 ~~~~~~~sg~yi~~~t~d~~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~~ 293 (315)
+++++++||+||+++|+|++|+|+|++|++|+++|++||+||++||+||+.||+.||+|..++|.+..
T Consensus 4 ~~~~~~~s~~yi~~~~~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~ 71 (87)
T 1sfc_D 4 EREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 71 (87)
T ss_dssp --------CCCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999987654
No 5
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.8e-18 Score=128.61 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 96 NDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 96 ~d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
+|++|+|||+||++|++++++||+||++||+||+.||++||+|..|||.++.||+.+|+|
T Consensus 1 ~d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~R 60 (64)
T 3b5n_D 1 GSEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNR 60 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999987
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.3e-16 Score=120.21 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=50.5
Q ss_pred chhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccccc
Q psy4205 242 NDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRYRC 294 (315)
Q Consensus 242 ~d~~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~~~ 294 (315)
+|+||+|||+||++|++++++||+||++||+|||.||++|++|..||+.+.+-
T Consensus 1 ~d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~r 53 (64)
T 3b5n_D 1 GSEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDIN 53 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999987653
No 7
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.57 E-value=3.7e-15 Score=111.87 Aligned_cols=61 Identities=54% Similarity=0.801 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy4205 96 NDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156 (315)
Q Consensus 96 ~d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~ 156 (315)
+|++|.|+|++|++|++.|++||+||++||+||+.||+.||+|.+++|.++.||+.+|+|.
T Consensus 1 ~d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl 61 (66)
T 1n7s_D 1 GSARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61 (66)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999984
No 8
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.35 E-value=6.5e-13 Score=99.60 Aligned_cols=52 Identities=58% Similarity=0.847 Sum_probs=49.3
Q ss_pred chhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhccccccc
Q psy4205 242 NDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRYR 293 (315)
Q Consensus 242 ~d~~edEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~~ 293 (315)
||++|.|+|++|++|++.|++||+||++||+||+.||+.||+|..+++.+..
T Consensus 1 ~d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~ 52 (66)
T 1n7s_D 1 GSARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 52 (66)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6899999999999999999999999999999999999999999999987643
No 9
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.31 E-value=2e-12 Score=96.64 Aligned_cols=56 Identities=21% Similarity=0.379 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr~ 156 (315)
.|+|++|+.|++.+++||+||.+||+||+.||+.||+|.+++|.+..||+.+|+|.
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl 60 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999984
No 10
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=96.19 Aligned_cols=55 Identities=27% Similarity=0.383 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.|+|++|+.|+..|++||+||++||+||+.||+.||+|.+++|.+..||..+|+|
T Consensus 15 ~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r 69 (82)
T 2nps_D 15 RMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKK 69 (82)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999998
No 11
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.05 E-value=4.3e-11 Score=94.43 Aligned_cols=38 Identities=66% Similarity=0.909 Sum_probs=34.1
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhccccc
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLks 39 (315)
+|.+|++|||||+|||++||+||+||++|||+|++|+|
T Consensus 46 Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~~ 83 (83)
T 1l4a_C 46 TLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGMEK 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 57899999999999999999999999999999999985
No 12
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.01 E-value=1.3e-10 Score=89.06 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=37.2
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGMEKC 40 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLks~ 40 (315)
+|++|++|||||+|||++||.|++||+.|||+|++|+++
T Consensus 31 Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 31 TLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 588999999999999999999999999999999999964
No 13
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.00 E-value=2.2e-10 Score=83.29 Aligned_cols=36 Identities=53% Similarity=0.805 Sum_probs=34.4
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGM 37 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sL 37 (315)
+|.+|++|||||+||+++||+||+||++|+|+|++|
T Consensus 19 Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 19 TITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 478999999999999999999999999999999986
No 14
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.88 E-value=1.1e-09 Score=81.68 Aligned_cols=46 Identities=24% Similarity=0.448 Sum_probs=41.2
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 247 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 247 dEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
.|.|++|+.|++.+++||+||.+||+||+.||+.||+|..++|.+.
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~ 50 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTD 50 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999998754
No 15
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=98.84 E-value=1.5e-09 Score=84.70 Aligned_cols=38 Identities=55% Similarity=0.781 Sum_probs=36.1
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhccccc
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLks 39 (315)
+|.+|++|||||.|||++||+||++|++|+|+|++|+|
T Consensus 42 Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 42 TLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 47899999999999999999999999999999999974
No 16
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=98.69 E-value=6.8e-09 Score=80.95 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=41.1
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 247 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 247 dEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
.|.|++|+.|++.|++||+||++||+||+.||+.||+|..++|...
T Consensus 15 ~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~ 60 (82)
T 2nps_D 15 RMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQ 60 (82)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999999999999998754
No 17
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=98.02 E-value=4e-06 Score=62.77 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=33.6
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Q psy4205 2 SYSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGME 38 (315)
Q Consensus 2 ~l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLk 38 (315)
.|.+|++|+|||.|++..|++|+.+|..|.|+|++|.
T Consensus 28 ~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 28 IIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 3789999999999999999999999999999999985
No 18
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=97.28 E-value=0.00019 Score=55.81 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=35.2
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhccccc
Q psy4205 3 YSSQEGQEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39 (315)
Q Consensus 3 l~eL~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLks 39 (315)
|.+|++|+|+|.+++..+++++.++..|.|+|++|.+
T Consensus 39 l~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~r 75 (81)
T 2nps_C 39 LENLSHDRERIQRARERLRETDANLGKSSRILTGMLR 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999873
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=95.00 E-value=0.059 Score=43.61 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
|-++.+.+|...+..|+.|-.+|+..+..|...||+|...++.....+..+++.
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~e 71 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 71 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999886
No 20
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=91.91 E-value=0.46 Score=35.33 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 104 EENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 104 D~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
++.+..|...+..|..|=.+|+.-+..|...||+|...++.....+..++..
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~e 56 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQ 56 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888889999999999999999999999999999999999888764
No 21
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=91.17 E-value=0.73 Score=34.71 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
=.+.+.+|...+..|..|=.+|+.-+..|...||+|...++.....+..++..
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~ 60 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888899999999999999999999999999999999999999888764
No 22
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=90.91 E-value=0.71 Score=33.86 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 105 ENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 105 ~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
+.+..|...+..|..|=.+|+.-+..|...||+|...++.....+..+++.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~e 59 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQ 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888889999999999999999999999999999999999888763
No 23
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=90.46 E-value=0.98 Score=33.40 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
-++.+..|...+..|..|=.+|+.-+..|...||+|...++.....+..++..
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~ 60 (69)
T 3b5n_B 8 RHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGH 60 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888999999999999999999999999999999999999888764
No 24
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=89.42 E-value=1.3 Score=32.50 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
-++.+..|...+..|..|=.+|+.=+..|...||+|...++.....+..++..
T Consensus 10 R~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~ 62 (68)
T 1n7s_B 10 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 62 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999999999999999999999888763
No 25
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=88.92 E-value=1.1 Score=34.22 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
=.+.+..|...+..|..|=.+|+.-+..|...||+|...++.....+..++..
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~e 71 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999888764
No 26
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=86.28 E-value=0.78 Score=34.08 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Q psy4205 6 QEGQEKQLDRIEEGMDQINADMKEAEKNLTGM 37 (315)
Q Consensus 6 L~eQGEQL~Rte~~LD~In~DLk~aEK~L~sL 37 (315)
.++|||.|++||.+++....++..|.+.|..=
T Consensus 29 V~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 60 (71)
T 2nps_B 29 IHDQGDLIDSIEANVESSEVHVERASDQLQRA 60 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998888543
No 27
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=85.81 E-value=0.88 Score=33.34 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Q psy4205 6 QEGQEKQLDRIEEGMDQINADMKEAEKNLTG 36 (315)
Q Consensus 6 L~eQGEQL~Rte~~LD~In~DLk~aEK~L~s 36 (315)
.++|||.|+||+.+++....++..|.+.|..
T Consensus 32 V~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 32 IHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999988853
No 28
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=84.39 E-value=1 Score=33.12 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHhhc
Q psy4205 6 QEGQEKQLDRIEEGMDQINADMKEAEKNLT 35 (315)
Q Consensus 6 L~eQGEQL~Rte~~LD~In~DLk~aEK~L~ 35 (315)
.++|||.|+||+.++.....++..|.+.|.
T Consensus 35 V~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 64 (68)
T 1n7s_B 35 VESQGEMIDRIEYNVEHAVDYVERAVSDTK 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999998875
No 29
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=84.21 E-value=1.1 Score=33.07 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Q psy4205 6 QEGQEKQLDRIEEGMDQINADMKEAEKNLTG 36 (315)
Q Consensus 6 L~eQGEQL~Rte~~LD~In~DLk~aEK~L~s 36 (315)
.++|||.|+||+.+++....++..|.+.|..
T Consensus 33 V~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (69)
T 3b5n_B 33 VIEQQENVDVIDKNVEDAQLDVEQGVGHTDK 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999988753
No 30
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=83.24 E-value=1.3 Score=33.37 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Q psy4205 6 QEGQEKQLDRIEEGMDQINADMKEAEKNLTGME 38 (315)
Q Consensus 6 L~eQGEQL~Rte~~LD~In~DLk~aEK~L~sLk 38 (315)
.++|||.|+|||.+++....++..|.+.|..=.
T Consensus 33 V~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (77)
T 1jth_B 33 VESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999988885433
No 31
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=79.94 E-value=1.9 Score=32.92 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Q psy4205 6 QEGQEKQLDRIEEGMDQINADMKEAEKNLTG 36 (315)
Q Consensus 6 L~eQGEQL~Rte~~LD~In~DLk~aEK~L~s 36 (315)
.++|||.|+|||.+++....++..|.+.|..
T Consensus 44 V~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 74 (83)
T 1sfc_B 44 VESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999988854
No 32
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=77.38 E-value=2.9 Score=33.57 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=38.7
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhcccccc
Q psy4205 248 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRY 292 (315)
Q Consensus 248 Emd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~ 292 (315)
|=++.+.++..-+..|..|-.||+..+..|-..||+|...++...
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~ 62 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334567888999999999999999999999999999998876544
No 33
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=76.88 E-value=5 Score=28.40 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 113 MIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 113 ~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
.+..-+..|...-.++..|-++|+|++..++..+.-++.+-+
T Consensus 8 l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k 49 (54)
T 1nhl_A 8 LAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEK 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHH
Confidence 344567788888999999999999999999998887776643
No 34
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=70.36 E-value=12 Score=28.56 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 101 ~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.++++-|.+|..-|.-+-..--.++..|-+|..+||++...+..+..|++...-.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4577788888888888888888889999999999999999999998888765543
No 35
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=61.91 E-value=23 Score=26.89 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 116 NLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 116 rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
.-+..|...-.+|..|.++|+|++..++..+.-++.+-+
T Consensus 34 Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k 72 (79)
T 1n7s_C 34 ESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEK 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHH
Confidence 445566677889999999999999999999887776654
No 36
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=58.38 E-value=27 Score=25.34 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 106 NMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 106 NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
-|.+--.++-.-..+|...-.+|-.|-++|.+..++++..|.-+..+.+
T Consensus 10 ~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k 58 (65)
T 1gl2_C 10 SIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRK 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHH
Confidence 3444445556677888899999999999999999999999998887764
No 37
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=57.87 E-value=24 Score=27.22 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 105 ENMGQVNTMI---GNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 105 ~NLd~ls~~L---~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
+-|+-.-.+| ..-+..|+.--.+|..|-++|+||+..+|..+.-++.|-+.
T Consensus 24 esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~ 77 (83)
T 1l4a_C 24 DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKN 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 34455777888999999999999999999988777766654
No 38
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=49.73 E-value=10 Score=34.50 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 104 EENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 104 D~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.+.+-.|...+..|..|=.+|+.-+..|...||+|...++.....+..++..
T Consensus 199 ~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~ 250 (267)
T 1dn1_B 199 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 250 (267)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999888888765
No 39
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=45.37 E-value=17 Score=31.53 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 102 EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
+..+.|.+|...+..|..|-.+|..-++.|...+++|...++.....+..++.
T Consensus 209 ~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~ 261 (279)
T 3c98_B 209 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 261 (279)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999887766665554
No 40
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=42.80 E-value=62 Score=24.46 Aligned_cols=50 Identities=8% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy4205 105 ENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTW 154 (315)
Q Consensus 105 ~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNk 154 (315)
+-|.+--.++-.=..+|...-.+|..|-++|.+..++++..|.-+..+.+
T Consensus 19 ~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k 68 (81)
T 2nps_C 19 RRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSR 68 (81)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHH
Confidence 34445555555667788889999999999999999999999998887764
No 41
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=38.65 E-value=53 Score=24.46 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 116 NLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 116 rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
.-...|+.--.+|..|-++|.|++..+|..+.-++.|.+.
T Consensus 23 e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~ 62 (70)
T 3b5n_C 23 DAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEK 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777788899999999999999999987777666554
No 42
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=37.18 E-value=6.9 Score=35.59 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q psy4205 104 EENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWK 155 (315)
Q Consensus 104 D~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aNkr 155 (315)
++.+..|...+..|..|=.+|+.=|..|...||+|...|+.....|..++..
T Consensus 216 ~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~ 267 (279)
T 2xhe_B 216 HKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQ 267 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999888875
No 43
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=24.68 E-value=74 Score=27.30 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=40.5
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHhHhhHhhhhccccccc
Q psy4205 247 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKFRYR 293 (315)
Q Consensus 247 dEmd~nL~~ls~~lg~Lk~mA~dmg~Eid~QN~~ldri~~k~d~~~~ 293 (315)
.+..+.|.++...+..|..|-.+|..-++.|...+++|...++.+.+
T Consensus 208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~ 254 (279)
T 3c98_B 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 254 (279)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888999999999999999999999999999999988766544
No 44
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.33 E-value=4.5e+02 Score=25.54 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=57.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccccccCCCCCCCcccccccccCCCCCCccCCCCccccCCCCCCCCCCCC
Q psy4205 11 KQLDRIEEGMDQINADMKEAEKNLTGMEKCCGICVLPCNKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNGLGPQAGY 90 (315)
Q Consensus 11 EQL~Rte~~LD~In~DLk~aEK~L~sLks~cGlf~~pw~~~k~~e~~k~~~~~~e~~~v~ssqP~r~~~~~~~~~~sg~y 90 (315)
.+|...|..++++.+-...++.++..|+-| |++. +|+....
T Consensus 38 ~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~-------~~~~---------------------Q~~~~d~----------- 78 (409)
T 1m1j_C 38 GELLEIEGLLQQATNSTGSIEYLIQHIKTI-------YPSE---------------------KQTLPQS----------- 78 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCSS---------------------TTCCSSC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccc---------------------cCCCCCc-----------
Confidence 578888888999998888999888888854 3331 1100000
Q ss_pred CcccCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4205 91 IGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKED 150 (315)
Q Consensus 91 ikrit~d~~e~EmD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~ 150 (315)
+..++ ..-.+|.+.+..+...+.+-..--..|...++.++..|+.|..++..+..+..
T Consensus 79 ~e~~t--q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 79 IEQLT--QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQ 136 (409)
T ss_dssp HHHHH--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhHH--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 00000 11123445555555555544444455556666777777777777776655443
No 45
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.05 E-value=2.9e+02 Score=23.73 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy4205 103 MEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153 (315)
Q Consensus 103 mD~NLd~ls~~L~rLK~mA~dMg~EId~QN~~LDrI~~Kvd~~d~rI~~aN 153 (315)
.+=.-..|.++.-.+..+|..|-.=||.|..+|.++...+..+..++.--.
T Consensus 52 K~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~ 102 (159)
T 3p8c_F 52 KAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHK 102 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345567777789999999999999999999999999988877765433
Done!