RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4205
(315 letters)
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex; 2.95A
{Loligo pealei} SCOP: h.1.15.1
Length = 87
Score = 82.4 bits (203), Expect = 3e-20
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 77 VMDDRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQID 136
+ D+NG+GP +GY+ +ITNDARE++ME NM +V++MIGNLRNMAIDMG+E+ +QNRQ+D
Sbjct: 2 TVGDQNGMGPSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVD 61
Query: 137 RINRKVKSASFKEDEGTWKGN 157
RI +K +S + DE K
Sbjct: 62 RIQQKAESNESRIDEANKKAT 82
Score = 80.8 bits (199), Expect = 1e-19
Identities = 41/66 (62%), Positives = 57/66 (86%)
Query: 223 VMDDRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQID 282
+ D+NG+GP +GY+ +ITNDARE++ME NM +V++MIGNLRNMAIDMG+E+ +QNRQ+D
Sbjct: 2 TVGDQNGMGPSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVD 61
Query: 283 RINRKV 288
RI +K
Sbjct: 62 RIQQKA 67
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1
Length = 87
Score = 79.5 bits (196), Expect = 4e-19
Identities = 39/72 (54%), Positives = 55/72 (76%)
Query: 77 VMDDRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQID 136
V+D+R + G+I ++TNDARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQID
Sbjct: 1 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID 60
Query: 137 RINRKVKSASFK 148
RI K S +
Sbjct: 61 RIMEKADSNKTR 72
Score = 78.3 bits (193), Expect = 1e-18
Identities = 38/66 (57%), Positives = 53/66 (80%)
Query: 223 VMDDRNGLGPQAGYIGKITNDARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQID 282
V+D+R + G+I ++TNDARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQID
Sbjct: 1 VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQID 60
Query: 283 RINRKV 288
RI K
Sbjct: 61 RIMEKA 66
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D
3ipd_D 1urq_D 1xtg_B
Length = 66
Score = 62.8 bits (153), Expect = 3e-13
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 97 DARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFK 148
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K S +
Sbjct: 2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTR 53
Score = 61.7 bits (150), Expect = 7e-13
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 243 DARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
ARENEM+EN+ QV+ +IGNLR+MA+DMG+E++ QNRQIDRI K
Sbjct: 2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 47
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin,
synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1,
coiled coil; 1.60A {Saccharomyces cerevisiae}
Length = 64
Score = 49.4 bits (118), Expect = 2e-08
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 97 DARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 142
E E++ N+ Q+ + L+ MA+ G EL++Q ++++ I
Sbjct: 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEEST 47
Score = 49.4 bits (118), Expect = 2e-08
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 243 DARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
E E++ N+ Q+ + L+ MA+ G EL++Q ++++ I
Sbjct: 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEEST 47
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein
transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Length = 54
Score = 42.7 bits (100), Expect = 3e-06
Identities = 19/29 (65%), Positives = 25/29 (86%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGM 37
Q++QL+RIEEG+DQIN DM+E EK LT +
Sbjct: 26 QKEQLNRIEEGLDQINKDMRETEKTLTEL 54
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C
3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Length = 79
Score = 43.4 bits (102), Expect = 4e-06
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39
Q +QLDR+EEGM+ IN DMKEAEKNL + K
Sbjct: 49 QGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex;
2.95A {Loligo pealei} SCOP: h.1.15.1
Length = 83
Score = 41.1 bits (96), Expect = 2e-05
Identities = 25/31 (80%), Positives = 28/31 (90%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39
Q +QLDRIEEG+DQIN DMK+AEKNL GMEK
Sbjct: 53 QGEQLDRIEEGLDQINQDMKDAEKNLEGMEK 83
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare
complex, VTI1A, VAMP4, transport protein; 2.50A {Homo
sapiens}
Length = 82
Score = 36.3 bits (84), Expect = 0.001
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 100 ENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 142
+E + V+ IG L+NM+ +G ELE Q ++ + ++
Sbjct: 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHEL 56
Score = 36.3 bits (84), Expect = 0.001
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 246 ENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
+E + V+ IG L+NM+ +G ELE Q ++ + ++
Sbjct: 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHEL 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 45/346 (13%), Positives = 103/346 (29%), Gaps = 106/346 (30%)
Query: 15 RIEEGMDQINAD------MKEAEKNLTGME------KCCGICV--LP---CNKS------ 51
R ++ D ++A + LT E K LP +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 52 --ASFKEDEGTWKGNDDGKVVNNQPQRVMDDR-NGLGP---QAGYIG--------KIT-- 95
S ++ TW V ++ +++ N L P + + I
Sbjct: 333 IAESIRDGLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 96 ------NDARENEMEENM----------GQVNTMIGNLRNMAIDMGSELENQ---NRQID 136
D ++++ + Q ++ ++ +++ +LEN+ +R I
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI- 449
Query: 137 RINR-KVKSASFKEDEGTWKGNDDGKVVN---------NQPQRVMDDRNEVVTYYNFRFL 186
++ + +D D + P+R+ R + +FRFL
Sbjct: 450 -VDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMTLFRM---VFLDFRFL 503
Query: 187 LTLSHPFVPRSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNGLGPQAGYIGKI--TNDA 244
+ D W N +++ L YI +
Sbjct: 504 ----------EQKIRHDSTAW----------NASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 245 RENEMEENMGQVNTMI-----GNLRNMAI--DMGSELENQNRQIDR 283
N + + + ++ + +L +A+ + + E ++Q+ R
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.019
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 45/143 (31%)
Query: 180 YYNFRFLLTL-------SHPFVPRSA--------SFKEDEG--TW----KGNDDGKVVNN 218
+ + R +T+ + P ++ S + +EG + +V
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV--- 349
Query: 219 QPQRVMDDRNGLGPQAG--YIGKITNDARENEMEENM---GQVNTMIG---NLRNMAIDM 270
Q ++ N P I + N A+ N+ G ++ G LR
Sbjct: 350 --QDYVNKTNSHLPAGKQVEIS-LVNGAK------NLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 271 GSELENQNRQIDRINRKVKFRYR 293
G +Q+R I RK+KF R
Sbjct: 401 G---LDQSR-IPFSERKLKFSNR 419
Score = 29.2 bits (65), Expect = 2.4
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 142 VKSASFKEDEGTW-KGND----DGKVVNNQPQRVMDDRNEVVTYYNFRFLLTLSHPFVPR 196
V + E E + +GND K++ ++ + + Y R +
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 197 SASFKE-DEGTWK--------GNDD 212
SA F+ EG + GN D
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTD 167
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane
protein, membrane fusion protein complex, coiled coil,
transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Length = 65
Score = 31.7 bits (72), Expect = 0.038
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153
E + + ++++I + M ++G+EL+ QN ID + V++ K
Sbjct: 6 EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEA 57
Score = 30.9 bits (70), Expect = 0.060
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 248 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
E + + ++++I + M ++G+EL+ QN ID + V
Sbjct: 6 EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLV 46
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin,
synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1,
SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
SCOP: h.1.15.1
Length = 70
Score = 28.7 bits (64), Expect = 0.50
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 9 QEKQLDRIEEGMDQINADMKEAEKNLTGMEK 39
Q +QL+ +E +D + K A++ + ++K
Sbjct: 38 QSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 30.6 bits (70), Expect = 0.74
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 21/63 (33%)
Query: 137 RINRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNEVVTYYNFRFLLT----LSHP 192
R + +V SA E+ W V DR + V+ RFL+ LS+
Sbjct: 119 RFDTRVTSAVLDEEGLRW--------------TVRTDRGDEVS---ARFLVVAAGPLSNA 161
Query: 193 FVP 195
P
Sbjct: 162 NTP 164
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 30.6 bits (70), Expect = 0.80
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 21/61 (34%)
Query: 139 NRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNEVVTYYNFRFLLT----LSHPFV 194
+ V +A+F E TW V + + + R+L+ LS P +
Sbjct: 116 HTTVTAAAFDEATNTW--------------TVDTNHGDRIR---ARYLIMASGQLSVPQL 158
Query: 195 P 195
P
Sbjct: 159 P 159
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 30.2 bits (69), Expect = 0.97
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 21/63 (33%)
Query: 137 RINRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNEVVTYYNFRFLLT----LSHP 192
+ +V SA + +DE W V D EV ++++ LS
Sbjct: 107 KFGTEVTSALYLDDENLW--------------EVTTDHGEVYR---AKYVVNAVGLLSAI 149
Query: 193 FVP 195
P
Sbjct: 150 NFP 152
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25,
SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A
{Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 69
Score = 26.9 bits (60), Expect = 2.1
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSAS 146
AR E+ ++ + L + DM + Q +D I++ V+ A
Sbjct: 7 ARHQELL----KLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 51
Score = 24.9 bits (55), Expect = 8.3
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 244 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKV 288
AR E+ ++ + L + DM + Q +D I++ V
Sbjct: 7 ARHQELL----KLEKSMAELTQLFNDMEELVIEQQENVDVIDKNV 47
Score = 24.9 bits (55), Expect = 9.2
Identities = 4/28 (14%), Positives = 15/28 (53%)
Query: 7 EGQEKQLDRIEEGMDQINADMKEAEKNL 34
Q++ +D I++ ++ D+++ +
Sbjct: 34 IEQQENVDVIDKNVEDAQLDVEQGVGHT 61
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 29.1 bits (66), Expect = 2.2
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 21/61 (34%)
Query: 139 NRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNEVVTYYNFRFLLT----LSHPFV 194
N +V +A + E++ W V D EVVT RFL++ LS +
Sbjct: 109 NTRVTAARYVENDRLW--------------EVTLDNEEVVT---CRFLISATGPLSASRM 151
Query: 195 P 195
P
Sbjct: 152 P 152
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
1hvv_A* 1urq_B
Length = 77
Score = 26.9 bits (60), Expect = 2.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSAS 146
R +E+ ++ I L +M +DM +E+Q IDRI V+ A
Sbjct: 7 TRHSEII----KLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 51
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 27.4 bits (61), Expect = 2.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSAS 146
R +E+ ++ I L +M +DM +E+Q IDRI V+ A
Sbjct: 18 TRHSEII----KLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Length = 68
Score = 26.5 bits (59), Expect = 2.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153
R +E+ ++ I L +M +DM +E+Q IDRI V+ A +
Sbjct: 9 TRHSEII----KLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAV 60
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion,
snare complex, early endosomal snare complex, VTI1A,
VAMP4, transport protein; 2.50A {Rattus norvegicus}
Length = 71
Score = 26.4 bits (59), Expect = 3.0
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 101 NEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153
+ E + Q+ I ++ + D+ + +Q ID I V+S+ + +
Sbjct: 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERAS 54
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Length = 83
Score = 26.6 bits (59), Expect = 3.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 98 ARENEMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSAS 146
R +E+ ++ I L +M +DM +E+Q IDRI V+ A
Sbjct: 18 TRHSEII----KLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Mus musculus} SCOP:
h.1.15.1
Length = 65
Score = 25.7 bits (57), Expect = 4.9
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 104 EENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153
E ++ Q+ I ++ + D+G + Q ID I V+SA +
Sbjct: 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQAN 57
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase;
1.90A {Clostridium thermocellum} SCOP: a.102.1.2
b.1.18.2
Length = 639
Score = 27.5 bits (61), Expect = 5.9
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 163 VNNQPQRVMDDR-----NEVVTYYN--FRFLLTLSHPFVPRSASFKEDEGTWKGNDDGKV 215
P+ +D + NE+ +N + L S + + NDDGKV
Sbjct: 527 GWPGPKDWVDIQDSYQTNEIAINWNAALIYALA----GFVNYNSPQNEVLYGDVNDDGKV 582
Query: 216 VNNQPQRVMDDRNGLGPQAGYIGKITNDA 244
N + R L +
Sbjct: 583 --NSTDLTLLKRYVLKAVSTLPSSKAEKN 609
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 26.7 bits (58), Expect = 9.9
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 102 EMEENMGQVNTMIGNLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGT 153
+ +++ Q+ + L M DM + + +Q IDRI V+ + + T
Sbjct: 214 DRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKAT 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.385
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,696,435
Number of extensions: 274946
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 67
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.6 bits)