RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4205
         (315 letters)



>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC
          {Synechococcus elongatus [TaxId: 32046]}
          Length = 80

 Score = 25.5 bits (55), Expect = 3.3
 Identities = 6/37 (16%), Positives = 7/37 (18%), Gaps = 2/37 (5%)

Query: 37 MEKC--CGICVLPCNKSASFKEDEGTWKGNDDGKVVN 71
           + C  C  CV  C             K         
Sbjct: 7  YDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPR 43


>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559
           {Mesorhizobium loti [TaxId: 381]}
          Length = 209

 Score = 26.1 bits (56), Expect = 5.8
 Identities = 11/103 (10%), Positives = 22/103 (21%), Gaps = 1/103 (0%)

Query: 203 DEGTWKGNDDGKVVNNQPQRVMDDRNG-LGPQAGYIGKITNDARENEMEENMGQVNTMIG 261
           + G W     G+V       +  DR+G +     Y           +M   +   N    
Sbjct: 6   EPGVWIERIGGRVFPPHLPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGI 65

Query: 262 NLRNMAIDMGSELENQNRQIDRINRKVKFRYRCRYVRKISDIC 304
            +  +    G                            +  + 
Sbjct: 66  PVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDMVL 108



 Score = 25.7 bits (55), Expect = 6.3
 Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 1/101 (0%)

Query: 57  DEGTWKGNDDGKVVNNQPQRVMDDRNG-LGPQAGYIGKITNDARENEMEENMGQVNTMIG 115
           + G W     G+V       +  DR+G +     Y           +M   +   N    
Sbjct: 6   EPGVWIERIGGRVFPPHLPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGI 65

Query: 116 NLRNMAIDMGSELENQNRQIDRINRKVKSASFKEDEGTWKG 156
            +  +    G                      +E+      
Sbjct: 66  PVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDM 106


>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of
           SecA {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 220

 Score = 26.0 bits (56), Expect = 6.3
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 132 NRQIDRINRKVKSASFKEDEGTWKGNDDGKVVNNQPQRVMDDRNEVVTYYNFR 184
            R I     +V+  +F+  +   K ++   V+N Q + +  +R  ++   N +
Sbjct: 5   TRAIKSAQTQVEQQNFEVRKNVLKYDE---VMNQQRKVIYAERRRILEGENLK 54


>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId:
          1484]}
          Length = 77

 Score = 24.3 bits (52), Expect = 6.7
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 24 NADMKEAEKNLTGMEKC--CGICVLPCNKSASFKEDE 58
          +   +  ++     + C  CG C   C  SA + ED 
Sbjct: 23 DCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59


>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 144

 Score = 25.3 bits (55), Expect = 6.9
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 273 ELENQNRQIDRINRKVKFRYRCRYVRKISDICLMNRELKL 312
           +L +   Q++ ++   + RYR    R I D+      L L
Sbjct: 17  DLAHTPSQLEGLDPATEARYRREGARFIFDVG---TRLGL 53


>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
          2288]}
          Length = 103

 Score = 24.7 bits (53), Expect = 7.9
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 37 MEKC--CGICVLPCNKSA-SFKEDEGTWKGNDDGKVVN 71
           + C   G C+  C  +   + +  G          VN
Sbjct: 42 FDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVN 79


>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 154

 Score = 25.0 bits (54), Expect = 9.6
 Identities = 4/25 (16%), Positives = 14/25 (56%)

Query: 10  EKQLDRIEEGMDQINADMKEAEKNL 34
           E     +++ ++ I+ D++ A  ++
Sbjct: 115 ELNYAGLDKLIEDIHTDIRVALNSM 139


>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
          N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 85

 Score = 24.3 bits (52), Expect = 9.9
 Identities = 8/33 (24%), Positives = 9/33 (27%), Gaps = 2/33 (6%)

Query: 38 EKC--CGICVLPCNKSASFKEDEGTWKGNDDGK 68
           KC  C  C   C  +A F E            
Sbjct: 32 AKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEA 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,147,081
Number of extensions: 52973
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 15
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)