BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4206
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 68.9 bits (167), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFL----PLEYTDPGDGDVKYHLGAYVKYRTPH 56
+V HRGRLN+L NIV P +FS F P + G GDVKYHLGA Y
Sbjct: 174 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAH--GSGDVKYHLGATGTYIQMF 231
Query: 57 SDKLMTLTLSSNPSHLELVYPVNLGKTKAFQFL 89
D + ++L++NPSHLE V PV G +A Q L
Sbjct: 232 GDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDL 264
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 68.6 bits (166), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFL----PLEYTDPGDGDVKYHLGAYVKYRTPH 56
+V HRGRLN+L NIV P +FS F P + G GDVKYHLGA Y
Sbjct: 419 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAH--GSGDVKYHLGATGTYIQMF 476
Query: 57 SDKLMTLTLSSNPSHLELVYPVNLGKTKAFQFL 89
D + ++L++NPSHLE V PV G +A Q L
Sbjct: 477 GDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDL 509
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKL 60
+V G AHRGRLN+L N++ ++F F G GDVKYH+G ++T L
Sbjct: 254 VVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQT--DGGL 311
Query: 61 MTLTLSSNPSHLELVYPVNLGKTKA 85
+ L L+ NPSHLE+V PV +G +A
Sbjct: 312 VHLALAFNPSHLEIVSPVVIGSVRA 336
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKL 60
+V G AHRGRLN+L N++ ++F F G GDVKYH+G ++T L
Sbjct: 254 VVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQT--DGGL 311
Query: 61 MTLTLSSNPSHLELVYPVNLGKTKA 85
+ L L+ NPSHLE+V PV +G +A
Sbjct: 312 VHLALAFNPSHLEIVSPVVIGSVRA 336
>pdb|1GIK|A Chain A, Pokeweed Antiviral Protein From Seeds
pdb|1J1Q|A Chain A, Structure Of Pokeweed Antiviral Protein From Seeds
(Pap-S1)
pdb|1J1R|A Chain A, Structure Of Pokeweed Antiviral Protein From Seeds
(Pap-S1) Complexed With Adenine
pdb|1J1S|A Chain A, Pokeweed Antiviral Protein From Seeds (Pap-S1) Complexed
With Formycin
Length = 261
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 34 YTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVN 79
Y+DP D +YH+ +K T +SD TL SSNP + P+N
Sbjct: 76 YSDPYDNKCRYHIFNDIK-GTEYSDVENTLCPSSNP---RVAKPIN 117
>pdb|2Q8W|A Chain A, Crystal Structure Of Pap-S1aci, A Pokeweed Antiviral
Protein From Seeds Of Phytolacca Acinosa
Length = 261
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 34 YTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVN 79
Y+DP D +YH+ +K T +SD TL S+NP + P+N
Sbjct: 76 YSDPYDNKCRYHIFNDIK-GTEYSDVENTLCPSTNP---RVAKPIN 117
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 67 SNPSHLELVYPVNLGKTKAFQFLSFRVDQK 96
S P++LE+V P N+ K KA +FL R++ K
Sbjct: 177 SFPTYLEIV-PKNVDKGKALRFLRERMNWK 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,006,159
Number of Sequences: 62578
Number of extensions: 117912
Number of successful extensions: 197
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 7
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)