Query psy4206
Match_columns 97
No_of_seqs 102 out of 634
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:32:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450|consensus 100.0 1.7E-42 3.7E-47 297.6 6.1 96 1-96 305-400 (1017)
2 COG0567 SucA 2-oxoglutarate de 100.0 3.9E-42 8.6E-47 299.1 6.5 92 1-94 231-322 (906)
3 PRK12270 kgd alpha-ketoglutara 100.0 7.3E-40 1.6E-44 288.1 6.9 91 1-92 549-641 (1228)
4 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.7E-35 3.6E-40 259.3 6.3 90 1-92 245-337 (929)
5 cd02016 TPP_E1_OGDC_like Thiam 100.0 7.2E-35 1.6E-39 226.7 6.9 90 1-91 42-134 (265)
6 KOG0451|consensus 100.0 3.7E-32 8E-37 231.0 3.3 94 1-96 213-309 (913)
7 PRK09404 sucA 2-oxoglutarate d 100.0 2.2E-30 4.9E-35 227.1 6.7 90 1-92 245-336 (924)
8 PF00676 E1_dh: Dehydrogenase 97.5 1.5E-05 3.2E-10 62.6 -1.0 74 3-91 49-122 (300)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 96.3 0.0062 1.4E-07 47.3 4.6 71 6-90 54-124 (293)
10 PLN02374 pyruvate dehydrogenas 95.6 0.013 2.9E-07 48.7 3.7 73 2-90 141-214 (433)
11 PF08667 BetR: BetR domain; I 64.2 9.2 0.0002 28.0 3.2 31 4-34 18-48 (147)
12 PLN02269 Pyruvate dehydrogenas 58.8 16 0.00036 29.8 4.1 69 6-90 88-158 (362)
13 PF15230 SRRM_C: Serine/argini 56.9 3.8 8.2E-05 26.5 0.1 9 67-75 43-51 (66)
14 PF03109 ABC1: ABC1 family; I 47.9 11 0.00023 25.7 1.2 29 18-48 3-31 (119)
15 KOG0016|consensus 37.0 46 0.001 26.7 3.4 42 51-93 9-51 (266)
16 cd08584 PI-PLCc_GDPD_SF_unchar 28.3 30 0.00066 26.2 1.1 10 5-16 2-11 (192)
17 PF13443 HTH_26: Cro/C1-type H 24.8 52 0.0011 19.1 1.5 18 10-27 42-59 (63)
18 PF15380 DUF4607: Domain of un 24.4 28 0.0006 27.8 0.3 13 64-76 83-95 (265)
19 PF12844 HTH_19: Helix-turn-he 24.0 66 0.0014 18.7 1.8 25 5-29 38-62 (64)
20 PF15598 Imm37: Immunity prote 22.9 1.1E+02 0.0024 21.4 3.1 30 3-32 121-153 (159)
21 PRK15108 biotin synthase; Prov 22.0 52 0.0011 26.4 1.4 23 5-27 1-25 (345)
22 KOG4088|consensus 21.9 47 0.001 24.9 1.0 45 22-67 57-102 (167)
No 1
>KOG0450|consensus
Probab=100.00 E-value=1.7e-42 Score=297.63 Aligned_cols=96 Identities=52% Similarity=0.780 Sum_probs=91.4
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccch
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNL 80 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~ 80 (97)
||||||||||||||+||+.||+++||+||+|.+..+++|||||||||++.++.++++||.|+|+|++||||||||||||+
T Consensus 305 iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~ 384 (1017)
T KOG0450|consen 305 IVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVM 384 (1017)
T ss_pred eEecCCccchhHHHHHHHhhHHHHHHHhccCCCCCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceee
Confidence 79999999999999999999999999999997777789999999999999999988999999999999999999999999
Q ss_pred hhhhhhhhhhcccccC
Q psy4206 81 GKTKAFQFLSFRVDQK 96 (97)
Q Consensus 81 G~~RA~Q~~~~d~~~~ 96 (97)
|||||+|.+.+|.+++
T Consensus 385 GKtrA~q~y~~D~~~~ 400 (1017)
T KOG0450|consen 385 GKTRAEQFYTGDEEGK 400 (1017)
T ss_pred chHHHHHHhccccccc
Confidence 9999999999987653
No 2
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.9e-42 Score=299.14 Aligned_cols=92 Identities=40% Similarity=0.548 Sum_probs=85.6
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccch
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNL 80 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~ 80 (97)
||||||||||||||+||||||++.||+||+|.......+||||||+|+++++.+. + +.|+|+|++||||||+|||||+
T Consensus 231 vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~-~-~~v~l~La~NPSHLE~v~PVV~ 308 (906)
T COG0567 231 VVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTD-G-GKVHLSLAFNPSHLEIVNPVVE 308 (906)
T ss_pred EEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccC-C-CeeEEEecCCcchhhhhchhhh
Confidence 7999999999999999999999999999999876555599999999999999986 4 4899999999999999999999
Q ss_pred hhhhhhhhhhcccc
Q psy4206 81 GKTKAFQFLSFRVD 94 (97)
Q Consensus 81 G~~RA~Q~~~~d~~ 94 (97)
|++||+|+.+.|.+
T Consensus 309 G~vRa~Qd~~~d~~ 322 (906)
T COG0567 309 GSVRAKQDRLGDTE 322 (906)
T ss_pred cchHhhhhhhccCc
Confidence 99999999998754
No 3
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=7.3e-40 Score=288.07 Aligned_cols=91 Identities=43% Similarity=0.572 Sum_probs=85.0
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCC--CCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCcc
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTD--PGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPV 78 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~--~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPV 78 (97)
||||||||||||||+||.||||.+||+||+|+-.|. .+|||||||||++.+.... .|++|.|+|++|||||||||||
T Consensus 549 vvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~-~g~~~~v~laaNPSHLEavdpV 627 (1228)
T PRK12270 549 VVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQM-FGDEIKVSLAANPSHLEAVDPV 627 (1228)
T ss_pred EEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeecc-CCCeeEEEEecCchhhhhcchH
Confidence 689999999999999999999999999999976544 4899999999999999887 7788999999999999999999
Q ss_pred chhhhhhhhhhhcc
Q psy4206 79 NLGKTKAFQFLSFR 92 (97)
Q Consensus 79 v~G~~RA~Q~~~~d 92 (97)
++|.+|||||..+.
T Consensus 628 leGivRakQd~l~~ 641 (1228)
T PRK12270 628 LEGIVRAKQDRLDK 641 (1228)
T ss_pred hhhhhhhhhhhhcc
Confidence 99999999999874
No 4
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.7e-35 Score=259.27 Aligned_cols=90 Identities=44% Similarity=0.681 Sum_probs=81.5
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCC--CCCCccccccc-eeEEEEecCCCceEEEEeecCCCcccccCc
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTD--PGDGDVKYHLG-AYVKYRTPHSDKLMTLTLSSNPSHLELVYP 77 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~--~~~GDVkYHlG-~~~~~~~~~~g~~i~lsl~~NPSHLEaVnP 77 (97)
||||||||||||||+||+|||+++||+||.|+..+. .++||||||+| +++++++ .++.++++|++||||||||+|
T Consensus 245 ~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~--~~~~~~~~l~~npSHLeav~P 322 (929)
T TIGR00239 245 VVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTT--DGKLVHLALAFNPSHLEIVSP 322 (929)
T ss_pred EEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCccccccc--CCCcceeeecCCCcccccccc
Confidence 689999999999999999999999999999976543 27999999999 8887766 467899999999999999999
Q ss_pred cchhhhhhhhhhhcc
Q psy4206 78 VNLGKTKAFQFLSFR 92 (97)
Q Consensus 78 Vv~G~~RA~Q~~~~d 92 (97)
|++|+|||+|+..+|
T Consensus 323 va~G~ArA~q~~~~~ 337 (929)
T TIGR00239 323 VVIGSTRARLDRLND 337 (929)
T ss_pred hhhhHHHHHHHhcCC
Confidence 999999999998653
No 5
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=7.2e-35 Score=226.69 Aligned_cols=90 Identities=50% Similarity=0.734 Sum_probs=82.8
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCC-CC--CCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCc
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEY-TD--PGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYP 77 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~-~~--~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnP 77 (97)
+|+|||||||||+|+|++|||+++||+||.|+.. ++ .++||||||+|++.++++. .+++|+++|++||||||+++|
T Consensus 42 ~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~~~~~-~~~~~~~~l~~npS~l~~~~p 120 (265)
T cd02016 42 VVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTP-SGKKVHLSLAPNPSHLEAVNP 120 (265)
T ss_pred EEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCcccccC-CCCeeEEEecCCCcccccccC
Confidence 5899999999999999999999999999999765 32 3689999999999988876 689999999999999999999
Q ss_pred cchhhhhhhhhhhc
Q psy4206 78 VNLGKTKAFQFLSF 91 (97)
Q Consensus 78 Vv~G~~RA~Q~~~~ 91 (97)
|++|+|||+|+...
T Consensus 121 va~G~A~A~k~~~~ 134 (265)
T cd02016 121 VVMGKTRAKQDYRG 134 (265)
T ss_pred eehhHHHHHHHhcC
Confidence 99999999999864
No 6
>KOG0451|consensus
Probab=99.97 E-value=3.7e-32 Score=231.04 Aligned_cols=94 Identities=36% Similarity=0.522 Sum_probs=85.9
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCC-CC--CCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCc
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEY-TD--PGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYP 77 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~-~~--~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnP 77 (97)
||||||||||||+|+.+|+.|++.||++++|..+ |+ +..|||.+||-.|.+.+- .+++++++|++||||||||||
T Consensus 213 viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg--~~~~lhvtMlpNPSHLEAvNP 290 (913)
T KOG0451|consen 213 VIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKG--LGKKLHVTMLPNPSHLEAVNP 290 (913)
T ss_pred EEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcc--cCCceEEEecCChhhhhccCc
Confidence 6899999999999999999999999999999765 54 379999999999988766 478999999999999999999
Q ss_pred cchhhhhhhhhhhcccccC
Q psy4206 78 VNLGKTKAFQFLSFRVDQK 96 (97)
Q Consensus 78 Vv~G~~RA~Q~~~~d~~~~ 96 (97)
|+|||||++|..+++++++
T Consensus 291 VAmGKtR~rqqsr~~Gdys 309 (913)
T KOG0451|consen 291 VAMGKTRSRQQSRGEGDYS 309 (913)
T ss_pred hhhcchhHHHHhhcCCCCC
Confidence 9999999999999887654
No 7
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.96 E-value=2.2e-30 Score=227.05 Aligned_cols=90 Identities=42% Similarity=0.562 Sum_probs=81.9
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCC--CCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCcc
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEY--TDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPV 78 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~--~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPV 78 (97)
+|+||+||||||+|+|++|||+++||+||.|+.. ...++||||||||++.+++.+ |+++++++++||||||+|+||
T Consensus 245 ~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~--gg~mhi~l~~npShleav~Pv 322 (924)
T PRK09404 245 IVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETD--GGEVHLSLAFNPSHLEIVNPV 322 (924)
T ss_pred EEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCC--CCeeEeeccCCccccccccCe
Confidence 5899999999999999999999999999999863 223799999999999987764 678999999999999999999
Q ss_pred chhhhhhhhhhhcc
Q psy4206 79 NLGKTKAFQFLSFR 92 (97)
Q Consensus 79 v~G~~RA~Q~~~~d 92 (97)
++|+|||+|+..++
T Consensus 323 a~G~A~A~q~~~~~ 336 (924)
T PRK09404 323 VEGSVRARQDRRGD 336 (924)
T ss_pred ehhHHHHHHHhcCC
Confidence 99999999998755
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=97.50 E-value=1.5e-05 Score=62.58 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=51.0
Q ss_pred eccCCcchHHHHHHhhCCCHHHHhchhCCCCCCCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccchhh
Q psy4206 3 FGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNLGK 82 (97)
Q Consensus 3 ~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~G~ 82 (97)
+-+.||++.++|+. +.++.++|+||.|+. .+.|+... -... ..+..++...++|+|.+ .|+++|.
T Consensus 49 v~~~yR~~~~~la~--g~~~~~~~~e~~g~~---~g~~g~~~-~~~~-------~~~~~~~~~~~~~vg~~--~p~a~G~ 113 (300)
T PF00676_consen 49 VFPYYRDHGHALAR--GIDLEEIFAELLGKA---KGHGGGRH-PLHF-------SDKGLNILGASSPVGAQ--VPIAAGV 113 (300)
T ss_dssp EEECSTTHHHHHHT--TT-HHHHHHHHHTBT---TSTTTTGC-TTEE-------EBTTTTBEEEESSTTTH--HHHHHHH
T ss_pred EEecccchhhhhhc--cccccchhHHhcCcc---cCCCCCcc-cccc-------ccccceeeecccccccc--Cccccch
Confidence 34559999999985 556999999999876 22344432 1111 12334666777777777 9999999
Q ss_pred hhhhhhhhc
Q psy4206 83 TKAFQFLSF 91 (97)
Q Consensus 83 ~RA~Q~~~~ 91 (97)
|+|.|....
T Consensus 114 A~a~k~~~~ 122 (300)
T PF00676_consen 114 ALAIKYRGK 122 (300)
T ss_dssp HHHHHHTTS
T ss_pred hHhhhhcCC
Confidence 999997553
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=96.35 E-value=0.0062 Score=47.25 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=56.4
Q ss_pred CCcchHHHHHHhhCCCHHHHhchhCCCCCCCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccchhhhhh
Q psy4206 6 AHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNLGKTKA 85 (97)
Q Consensus 6 aHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~G~~RA 85 (97)
.||+.-.+|+ .|.++.+||+|+.|+......-....+|++.. ...+....++|.+.-|+++|.+.|
T Consensus 54 ~yR~~~~~la--~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~------------~~~~~~~~g~lG~~~p~a~G~a~a 119 (293)
T cd02000 54 TYRDHGHALA--RGVDLKEMLAELFGKETGPCKGRGGSMHIGDK------------EKNFFGGNGIVGGQVPLAAGAALA 119 (293)
T ss_pred cchhHHHHHH--cCCCHHHHHHHHcCCCCCCCCCCCCCCCCCch------------hcCccccccccccchhHHHHHHHH
Confidence 8999999997 89999999999999876443223366677632 234667789999999999999999
Q ss_pred hhhhh
Q psy4206 86 FQFLS 90 (97)
Q Consensus 86 ~Q~~~ 90 (97)
.+...
T Consensus 120 ~k~~~ 124 (293)
T cd02000 120 LKYRG 124 (293)
T ss_pred HHHhC
Confidence 98754
No 10
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=95.62 E-value=0.013 Score=48.73 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=53.6
Q ss_pred eeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCC-CCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccch
Q psy4206 2 VFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTD-PGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNL 80 (97)
Q Consensus 2 v~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~-~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~ 80 (97)
+++ .||++..+| ..|.++.+||+|+.|+.... .+.|+ .+|++.. +.. +...-+.|-..-|+++
T Consensus 141 v~~-~yR~h~~~L--a~G~~~~~~mael~Gk~~g~~~Grgg-smH~~~~-~~~-----------~~g~~g~lG~~lP~Av 204 (433)
T PLN02374 141 VVS-TYRDHVHAL--SKGVPARAVMSELFGKATGCCRGQGG-SMHMFSK-EHN-----------LLGGFAFIGEGIPVAT 204 (433)
T ss_pred EEc-cCcChHHhh--hcCCCHHHHHHHHcCCCCCCCCCCCC-cCccCch-hhC-----------CCCCceeccCchhHHH
Confidence 455 899999999 67999999999999987643 35555 7888522 222 2233345667899999
Q ss_pred hhhhhhhhhh
Q psy4206 81 GKTKAFQFLS 90 (97)
Q Consensus 81 G~~RA~Q~~~ 90 (97)
|.+.|.|...
T Consensus 205 GaA~A~k~~~ 214 (433)
T PLN02374 205 GAAFSSKYRR 214 (433)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 11
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=64.19 E-value=9.2 Score=27.99 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=29.0
Q ss_pred ccCCcchHHHHHHhhCCCHHHHhchhCCCCC
Q psy4206 4 GSAHRGRLNLLTNIVHAPLVNVFSRFLPLEY 34 (97)
Q Consensus 4 GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~ 34 (97)
|++.|.+-..|+++|+.++...-++++|+..
T Consensus 18 Gi~kr~~~s~LA~iL~Is~ssa~RKL~G~~~ 48 (147)
T PF08667_consen 18 GIPKRKHASELADILGISYSSAYRKLNGKSP 48 (147)
T ss_pred CCcchhhHHHHHHHHCCCHHHHHHHhcCCCC
Confidence 7899999999999999999999999999754
No 12
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=58.84 E-value=16 Score=29.76 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=49.0
Q ss_pred CCcchHHHHHHhhCCCHHHHhchhCCCCCCC-CC-CCccccccceeEEEEecCCCceEEEEeecCCCcccccCccchhhh
Q psy4206 6 AHRGRLNLLTNIVHAPLVNVFSRFLPLEYTD-PG-DGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNLGKT 83 (97)
Q Consensus 6 aHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~-~~-~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~G~~ 83 (97)
.||+.==.|+ .|.++.++|+|+.|+.... .+ .| .-|++. -.+.+++..|+|=+..|+++|.|
T Consensus 88 ~yR~hg~~la--~G~~~~~~~ae~~g~~~g~~~Grgg--smH~~~------------~~~~~~~~~~~vG~~~p~A~G~A 151 (362)
T PLN02269 88 AYRDHCTHLG--RGGTVLEVFAELMGRKDGCSRGKGG--SMHFYK------------KDANFYGGHGIVGAQVPLGAGLA 151 (362)
T ss_pred chhhHHHHHH--cCCCHHHHHHHHcCCCCCCCCCCCC--cccccc------------hhcCccccCchhhccccHHHHHH
Confidence 5777765554 5889999999999977532 11 22 335431 12345567799999999999999
Q ss_pred hhhhhhh
Q psy4206 84 KAFQFLS 90 (97)
Q Consensus 84 RA~Q~~~ 90 (97)
.|.|...
T Consensus 152 ~A~k~~~ 158 (362)
T PLN02269 152 FAQKYNK 158 (362)
T ss_pred HHHHHhC
Confidence 9999865
No 13
>PF15230 SRRM_C: Serine/arginine repetitive matrix protein C-terminus
Probab=56.95 E-value=3.8 Score=26.55 Aligned_cols=9 Identities=56% Similarity=0.800 Sum_probs=7.2
Q ss_pred cCCCccccc
Q psy4206 67 SNPSHLELV 75 (97)
Q Consensus 67 ~NPSHLEaV 75 (97)
.-||||||=
T Consensus 43 DSPS~lEaR 51 (66)
T PF15230_consen 43 DSPSHLEAR 51 (66)
T ss_pred CCccccchh
Confidence 469999973
No 14
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=47.92 E-value=11 Score=25.68 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=20.3
Q ss_pred hCCCHHHHhchhCCCCCCCCCCCccccccce
Q psy4206 18 VHAPLVNVFSRFLPLEYTDPGDGDVKYHLGA 48 (97)
Q Consensus 18 l~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~ 48 (97)
||+|+.++|.+|+..+....-.|=| |.+.
T Consensus 3 lG~~~~~~F~~fd~~PlasASiaQV--h~a~ 31 (119)
T PF03109_consen 3 LGKPIDEIFDEFDPEPLASASIAQV--HRAR 31 (119)
T ss_pred cCCCHHHHHHHCCcchhhheehhhh--eeee
Confidence 7999999999999755433334444 5554
No 15
>KOG0016|consensus
Probab=37.02 E-value=46 Score=26.74 Aligned_cols=42 Identities=10% Similarity=-0.027 Sum_probs=31.7
Q ss_pred EEEecCCCceEEEEeecCCCcccccCcc-chhhhhhhhhhhccc
Q psy4206 51 KYRTPHSDKLMTLTLSSNPSHLELVYPV-NLGKTKAFQFLSFRV 93 (97)
Q Consensus 51 ~~~~~~~g~~i~lsl~~NPSHLEaVnPV-v~G~~RA~Q~~~~d~ 93 (97)
-..++ .++-.++.+..||.+++|.|+. ...++||-.+...|+
T Consensus 9 ~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dd 51 (266)
T KOG0016|consen 9 IVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDD 51 (266)
T ss_pred eEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhccc
Confidence 33344 4567889999999999999996 467888887766554
No 16
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=28.32 E-value=30 Score=26.19 Aligned_cols=10 Identities=60% Similarity=0.846 Sum_probs=7.3
Q ss_pred cCCcchHHHHHH
Q psy4206 5 SAHRGRLNLLTN 16 (97)
Q Consensus 5 MaHRGRLNvL~n 16 (97)
+|||| |.|..
T Consensus 2 iAHRG--NTl~A 11 (192)
T cd08584 2 IAHRG--NTITA 11 (192)
T ss_pred Cccch--HHHHH
Confidence 58999 77654
No 17
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=24.83 E-value=52 Score=19.06 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=13.6
Q ss_pred hHHHHHHhhCCCHHHHhc
Q psy4206 10 RLNLLTNIVHAPLVNVFS 27 (97)
Q Consensus 10 RLNvL~nvl~kp~~~iF~ 27 (97)
-|.-|+..|+.++.++|.
T Consensus 42 ~l~~ia~~l~~~~~el~~ 59 (63)
T PF13443_consen 42 TLEKIAKALNCSPEELFE 59 (63)
T ss_dssp HHHHHHHHHT--HHHCTE
T ss_pred HHHHHHHHcCCCHHHHhh
Confidence 477889999999999985
No 18
>PF15380 DUF4607: Domain of unknown function (DUF4607)
Probab=24.43 E-value=28 Score=27.77 Aligned_cols=13 Identities=46% Similarity=0.463 Sum_probs=9.2
Q ss_pred EeecCCCcccccC
Q psy4206 64 TLSSNPSHLELVY 76 (97)
Q Consensus 64 sl~~NPSHLEaVn 76 (97)
.-.-||.||||.-
T Consensus 83 ~hsvNp~~Lea~G 95 (265)
T PF15380_consen 83 AHSVNPIHLEAAG 95 (265)
T ss_pred ccccCceeeecce
Confidence 3456888998864
No 19
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=24.03 E-value=66 Score=18.67 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=19.1
Q ss_pred cCCcchHHHHHHhhCCCHHHHhchh
Q psy4206 5 SAHRGRLNLLTNIVHAPLVNVFSRF 29 (97)
Q Consensus 5 MaHRGRLNvL~nvl~kp~~~iF~ef 29 (97)
++..+.+.-|+.+|+-++..+|...
T Consensus 38 ~~~~~~l~~i~~~~~v~~~~l~~~~ 62 (64)
T PF12844_consen 38 KPSVSTLKKIAEALGVSLDELFDGE 62 (64)
T ss_dssp --BHHHHHHHHHHHTS-HHHHCCCH
T ss_pred CCCHHHHHHHHHHhCCCHHHHhccC
Confidence 4667889999999999999998753
No 20
>PF15598 Imm37: Immunity protein 37
Probab=22.87 E-value=1.1e+02 Score=21.44 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=24.7
Q ss_pred eccCCc---chHHHHHHhhCCCHHHHhchhCCC
Q psy4206 3 FGSAHR---GRLNLLTNIVHAPLVNVFSRFLPL 32 (97)
Q Consensus 3 ~GMaHR---GRLNvL~nvl~kp~~~iF~ef~g~ 32 (97)
++|... ..|+-|+.+|+.+++++.+-|...
T Consensus 121 ~~~~~~~~~~~l~~lShll~~s~~eL~~s~l~p 153 (159)
T PF15598_consen 121 REMMDIFSSLELVQLSHLLQLSPEELLASFLDP 153 (159)
T ss_pred cccccccchHHHHHHHHHHCCCHHHHHHHhcCC
Confidence 345555 789999999999999999999753
No 21
>PRK15108 biotin synthase; Provisional
Probab=22.05 E-value=52 Score=26.36 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=16.1
Q ss_pred cCCcchHHH--HHHhhCCCHHHHhc
Q psy4206 5 SAHRGRLNL--LTNIVHAPLVNVFS 27 (97)
Q Consensus 5 MaHRGRLNv--L~nvl~kp~~~iF~ 27 (97)
|+||.||.. ...++..|+.++++
T Consensus 1 ~~~~~~l~~~e~~~l~~~~l~~l~~ 25 (345)
T PRK15108 1 MAHRPRWTLSQVTELFEKPLLELLF 25 (345)
T ss_pred CCccCCCCHHHHHHHHcccHHHHHH
Confidence 899999987 34445667666654
No 22
>KOG4088|consensus
Probab=21.87 E-value=47 Score=24.85 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=33.9
Q ss_pred HHHHhchhCCCCCCCCCCCc-cccccceeEEEEecCCCceEEEEeec
Q psy4206 22 LVNVFSRFLPLEYTDPGDGD-VKYHLGAYVKYRTPHSDKLMTLTLSS 67 (97)
Q Consensus 22 ~~~iF~ef~g~~~~~~~~GD-VkYHlG~~~~~~~~~~g~~i~lsl~~ 67 (97)
..++|+||-|+-.|-..++| -||-...+-+.+.. +..+..+.+..
T Consensus 57 n~~l~Aev~Gk~~PVs~~~d~~kyQVSW~ldhK~a-~agt~~vr~FD 102 (167)
T KOG4088|consen 57 NIQLTAEVNGKLIPVSISDDTAKYQVSWTLDHKDA-GAGTFNVRIFD 102 (167)
T ss_pred ceEEEEecCCEEEeEEecCccceEEEEEEEeeccc-CCceEEEEEeC
Confidence 45789999988777667889 79988888887765 44567776653
Done!