Query psy4206
Match_columns 97
No_of_seqs 102 out of 634
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:33:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgd_A 2-oxoglutarate dehydrog 99.9 1.1E-23 3.6E-28 183.7 7.6 88 1-90 254-341 (933)
2 2yic_A 2-oxoglutarate decarbox 99.9 3.5E-23 1.2E-27 179.2 7.9 90 1-91 174-266 (868)
3 2xt6_A 2-oxoglutarate decarbox 99.9 2.1E-22 7.1E-27 177.8 7.8 90 1-91 419-511 (1113)
4 1qs0_A 2-oxoisovalerate dehydr 98.5 4.3E-08 1.5E-12 78.7 2.8 72 2-89 128-200 (407)
5 2bfd_A 2-oxoisovalerate dehydr 98.3 5E-07 1.7E-11 72.1 4.7 73 2-89 109-181 (400)
6 1umd_A E1-alpha, 2-OXO acid de 97.8 8.4E-06 2.9E-10 63.9 2.9 72 5-90 93-164 (367)
7 2ozl_A PDHE1-A type I, pyruvat 97.4 0.00012 4.2E-09 57.8 4.0 66 6-89 92-159 (365)
8 1w85_A Pyruvate dehydrogenase 97.4 2.5E-05 8.6E-10 61.6 -0.1 65 1-89 97-161 (368)
9 3fym_A Putative uncharacterize 25.4 75 0.0026 20.5 3.5 25 9-33 52-76 (130)
10 4gop_A Putative uncharacterize 23.8 60 0.0021 21.2 2.8 43 39-84 24-68 (114)
11 3di5_A DINB-like protein; stru 22.2 15 0.00052 24.0 -0.5 21 6-26 131-151 (168)
12 2ckk_A KIN17; beta barrel, rib 20.8 73 0.0025 21.3 2.8 9 69-77 63-71 (127)
No 1
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.89 E-value=1.1e-23 Score=183.66 Aligned_cols=88 Identities=41% Similarity=0.633 Sum_probs=79.1
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccch
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNL 80 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~ 80 (97)
+|+||+||||+|+|+|++|+|+.+||+||.|+.....+.||||||+|++....++ |+.++++|++|||||+++.|+++
T Consensus 254 ~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~--gg~~~l~l~~~~shlg~~~p~A~ 331 (933)
T 2jgd_A 254 VVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTD--GGLVHLALAFNPSHLEIVSPVVI 331 (933)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEET--TEEEEEEECCCCSSTTCHHHHHH
T ss_pred EEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccC--CCceEEeecccCcccccccCHHH
Confidence 4789999999999999999999999999999864333689999999999988775 67899999999999999999999
Q ss_pred hhhhhhhhhh
Q psy4206 81 GKTKAFQFLS 90 (97)
Q Consensus 81 G~~RA~Q~~~ 90 (97)
|.|+|+|+..
T Consensus 332 G~A~A~~~~~ 341 (933)
T 2jgd_A 332 GSVRARLDRL 341 (933)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhhc
Confidence 9999999874
No 2
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.88 E-value=3.5e-23 Score=179.24 Aligned_cols=90 Identities=44% Similarity=0.576 Sum_probs=74.0
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCC--CCCCccccccceeEEEEecCCCc-eEEEEeecCCCcccccCc
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTD--PGDGDVKYHLGAYVKYRTPHSDK-LMTLTLSSNPSHLELVYP 77 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~--~~~GDVkYHlG~~~~~~~~~~g~-~i~lsl~~NPSHLEaVnP 77 (97)
+|+||+||||+|+|+|++|+|+.+||+||.|+.... .++||||||+|++....+. .|+ .+++++++|||||+++.|
T Consensus 174 ~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~-~g~~~v~l~l~~n~s~Lg~~~P 252 (868)
T 2yic_A 174 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQM-FGDNDIEVSLTANPSHLEAVDP 252 (868)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECS-SSSCEEEEEECCCCSSTTTTHH
T ss_pred EEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCcccccccc-CCCcceeeeecCCCcccccccc
Confidence 478999999999999999999999999999986533 3689999999999988774 355 899999999999999999
Q ss_pred cchhhhhhhhhhhc
Q psy4206 78 VNLGKTKAFQFLSF 91 (97)
Q Consensus 78 Vv~G~~RA~Q~~~~ 91 (97)
+++|.|+|+|+..+
T Consensus 253 ~A~G~A~A~k~~~~ 266 (868)
T 2yic_A 253 VLEGLVRAKQDLLD 266 (868)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999998753
No 3
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.86 E-value=2.1e-22 Score=177.84 Aligned_cols=90 Identities=44% Similarity=0.576 Sum_probs=73.0
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCC--CCCCccccccceeEEEEecCCCc-eEEEEeecCCCcccccCc
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTD--PGDGDVKYHLGAYVKYRTPHSDK-LMTLTLSSNPSHLELVYP 77 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~--~~~GDVkYHlG~~~~~~~~~~g~-~i~lsl~~NPSHLEaVnP 77 (97)
+|+||+||||+|+|+|++|+|+.+||+||.|+.... .++||||||+|++....+. .|+ .+++++++|||||+++.|
T Consensus 419 ~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~-~g~~~v~l~l~~n~s~Lg~~~p 497 (1113)
T 2xt6_A 419 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQM-FGDNDIEVSLTANPSHLEAVDP 497 (1113)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECS-SSSCEEEEEECCCCSSTTTTHH
T ss_pred EEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCcccccccc-CCCcceeeeecCCCcccccccc
Confidence 478999999999999999999999999999986533 3689999999999988764 355 899999999999999999
Q ss_pred cchhhhhhhhhhhc
Q psy4206 78 VNLGKTKAFQFLSF 91 (97)
Q Consensus 78 Vv~G~~RA~Q~~~~ 91 (97)
+++|.|+|+|+...
T Consensus 498 ~A~G~A~A~k~~~~ 511 (1113)
T 2xt6_A 498 VLEGLVRAKQDLLD 511 (1113)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998763
No 4
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=98.50 E-value=4.3e-08 Score=78.69 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=58.2
Q ss_pred eeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCCC-CCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccch
Q psy4206 2 VFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDP-GDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNL 80 (97)
Q Consensus 2 v~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~-~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~ 80 (97)
|+ |+|||+.++|+ .|+|+.+||++|.|+..... +. .+++|++.. + ..+.++++||.+..|+++
T Consensus 128 v~-~~yR~~~~~l~--~g~~~~~i~~el~g~~~~~~~G~-g~~~h~~~~-~-----------~~~~~~~g~lG~~lp~Av 191 (407)
T 1qs0_A 128 CF-PTYRQQSILMA--RDVSLVEMICQLLSNERDPLKGR-QLPIMYSVR-E-----------AGFFTISGNLATQFVQAV 191 (407)
T ss_dssp EE-CCSSCHHHHHH--TTCCHHHHHHHHHTCTTCTTTTC-SCTTCCCBG-G-----------GTBCCCCSSSSHHHHHHH
T ss_pred EE-ecccchHHHHh--cCCCHHHHHHHHhCCCCCCCCCC-Cceeecchh-c-----------cCccccccccccchhHHH
Confidence 44 99999999997 99999999999999754222 22 589999862 1 135778999999999999
Q ss_pred hhhhhhhhh
Q psy4206 81 GKTKAFQFL 89 (97)
Q Consensus 81 G~~RA~Q~~ 89 (97)
|.+.|.|..
T Consensus 192 GaA~A~k~~ 200 (407)
T 1qs0_A 192 GWAMASAIK 200 (407)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998864
No 5
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=98.30 E-value=5e-07 Score=72.08 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=57.7
Q ss_pred eeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccchh
Q psy4206 2 VFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNLG 81 (97)
Q Consensus 2 v~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~G 81 (97)
|++ +||||. +.+..|+++.++|++|.|+......-.+++||++.. . + .+..++|||....|+++|
T Consensus 109 v~~-~yR~~~--~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~-------~---~--~~~~~~g~lG~~lp~AvG 173 (400)
T 2bfd_A 109 VFG-QAREAG--VLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCK-------E---R--HFVTISSPLATQIPQAVG 173 (400)
T ss_dssp EEC-CSCCHH--HHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBT-------T---T--TBCCCCSSTTTHHHHHHH
T ss_pred EEe-cCcCHH--HHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCccc-------c---c--CccccCccccccccHHHH
Confidence 565 899997 778899999999999999754322122589999843 1 1 167899999999999999
Q ss_pred hhhhhhhh
Q psy4206 82 KTKAFQFL 89 (97)
Q Consensus 82 ~~RA~Q~~ 89 (97)
.+.|.+..
T Consensus 174 ~AlA~~~~ 181 (400)
T 2bfd_A 174 AAYAAKRA 181 (400)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhhh
Confidence 99999854
No 6
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=97.82 E-value=8.4e-06 Score=63.87 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=56.8
Q ss_pred cCCcchHHHHHHhhCCCHHHHhchhCCCCCCCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccchhhhh
Q psy4206 5 SAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNLGKTK 84 (97)
Q Consensus 5 MaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~G~~R 84 (97)
++||+ +.+.++.|+++.++|++|.++......-++.+||++... . .+.++++||++..|+++|.+.
T Consensus 93 ~s~r~--~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~------~------~~~~~~g~lG~~l~~a~G~A~ 158 (367)
T 1umd_A 93 PYYRD--HGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKA------L------NFFTVASPIASHVPPAAGAAI 158 (367)
T ss_dssp CCTTT--HHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTT------T------TBCCCCSSTTTTHHHHHHHHH
T ss_pred eCcHH--HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccc------c------CcCCCCchhhhhhhHHHHHHH
Confidence 79996 999999999999999999996543222234589997432 1 356699999999999999999
Q ss_pred hhhhhh
Q psy4206 85 AFQFLS 90 (97)
Q Consensus 85 A~Q~~~ 90 (97)
|.+...
T Consensus 159 a~k~~~ 164 (367)
T 1umd_A 159 SMKLLR 164 (367)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 988654
No 7
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=97.38 E-value=0.00012 Score=57.76 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=52.7
Q ss_pred CCcchHHHHHHhhCCCHHHHhchhCCCCCCC--CCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccchhhh
Q psy4206 6 AHRGRLNLLTNIVHAPLVNVFSRFLPLEYTD--PGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNLGKT 83 (97)
Q Consensus 6 aHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~--~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~G~~ 83 (97)
.|| .+.+++++|+|+.+||+||.|+.... ...|| ||+. + . .+....+++-+..|+++|.+
T Consensus 92 ~yR--~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~--~H~~-~-------~------~~~~~~g~~G~~lp~A~G~A 153 (365)
T 2ozl_A 92 AYR--AHGFTFTRGLSVREILAELTGRKGGCAKGKGGS--MHMY-A-------K------NFYGGNGIVGAQVPLGAGIA 153 (365)
T ss_dssp CSC--CHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCT--TCCC-B-------T------TBCCCCCSTTTHHHHHHHHH
T ss_pred HHH--HHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCC--CCcC-c-------c------ccCCCcchhhhhhHHHHHHH
Confidence 588 79999999999999999999976532 23577 8984 2 1 13456789999999999999
Q ss_pred hhhhhh
Q psy4206 84 KAFQFL 89 (97)
Q Consensus 84 RA~Q~~ 89 (97)
+|.+..
T Consensus 154 ~A~~~~ 159 (365)
T 2ozl_A 154 LACKYN 159 (365)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999864
No 8
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=97.36 E-value=2.5e-05 Score=61.62 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=50.7
Q ss_pred CeeccCCcchHHHHHHhhCCCHHHHhchhCCCCCCCCCCCccccccceeEEEEecCCCceEEEEeecCCCcccccCccch
Q psy4206 1 MVFGSAHRGRLNLLTNIVHAPLVNVFSRFLPLEYTDPGDGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPVNL 80 (97)
Q Consensus 1 iv~GMaHRGRLNvL~nvl~kp~~~iF~ef~g~~~~~~~~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPVv~ 80 (97)
+|++| ||+ +.+.+..|+++..+|+||.|... + |+ +| . ++.+.+++|||.+..|+++
T Consensus 97 ~v~~~-~R~--~~~~~~~G~~~~~~~~el~G~~~---G-~~--~h---------~------~~~~~~~~g~lG~~lp~Av 152 (368)
T 1w85_A 97 FILPG-YRD--VPQIIWHGLPLYQAFLFSRGHFH---G-NQ--IP---------E------GVNVLPPQIIIGAQYIQAA 152 (368)
T ss_dssp EEECC-SSC--HHHHHHTTCCHHHHHHHHHTCGG---G-GC--CC---------T------TCCBCCCCCSTTHHHHHHH
T ss_pred EEEec-chh--HHHHHhcCCCHHHHHHHHCCCCC---C-CC--CC---------c------ccccCCCccccCccccHHH
Confidence 36788 755 67889999999999999998643 1 11 23 1 1357789999999999999
Q ss_pred hhhhhhhhh
Q psy4206 81 GKTKAFQFL 89 (97)
Q Consensus 81 G~~RA~Q~~ 89 (97)
|.+.|.+..
T Consensus 153 G~A~A~~~~ 161 (368)
T 1w85_A 153 GVALGLKMR 161 (368)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHhHhh
Confidence 999999864
No 9
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=25.37 E-value=75 Score=20.48 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=21.4
Q ss_pred chHHHHHHhhCCCHHHHhchhCCCC
Q psy4206 9 GRLNLLTNIVHAPLVNVFSRFLPLE 33 (97)
Q Consensus 9 GRLNvL~nvl~kp~~~iF~ef~g~~ 33 (97)
|-|.-++..||-++.++|.+++...
T Consensus 52 ~~l~~ia~~L~v~~~~l~~~~~~~~ 76 (130)
T 3fym_A 52 GFIRKYASVVNIEPNQLIQAHQDEI 76 (130)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4578899999999999999987644
No 10
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=23.79 E-value=60 Score=21.24 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=28.6
Q ss_pred CCccccccceeEEEEecCCCceEEEEeecCCCcccccCcc--chhhhh
Q psy4206 39 DGDVKYHLGAYVKYRTPHSDKLMTLTLSSNPSHLELVYPV--NLGKTK 84 (97)
Q Consensus 39 ~GDVkYHlG~~~~~~~~~~g~~i~lsl~~NPSHLEaVnPV--v~G~~R 84 (97)
.|=|...-|.+...+.. +++.|.+.|.+ |+|+| ++-+ +.|++-
T Consensus 24 vGkV~~~~g~~~~l~s~-d~~~Vtv~l~~-~~~~~-~~~~vEViG~V~ 68 (114)
T 4gop_A 24 VGKVHKVTGNTLLMQTS-DLGNVEIAMTP-DSDVS-SSTFVEVTGKVS 68 (114)
T ss_dssp EEEEEEEETTEEEEECT-TSCEEEEECCS-SCCGG-GCSEEEEEEEEC
T ss_pred EEEEeeeCCCEEEEEeC-CCCEEEEEeCC-CCCcc-cCcEEEEEEEEc
Confidence 56666555666677776 77889998877 88987 3333 345543
No 11
>3di5_A DINB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.01A {Bacillus cereus atcc 10987}
Probab=22.24 E-value=15 Score=24.03 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.2
Q ss_pred CCcchHHHHHHhhCCCHHHHh
Q psy4206 6 AHRGRLNLLTNIVHAPLVNVF 26 (97)
Q Consensus 6 aHRGRLNvL~nvl~kp~~~iF 26 (97)
-|||-+.++...+|.++..+|
T Consensus 131 hHrGQi~~~lr~~G~~~P~~y 151 (168)
T 3di5_A 131 HHRGQMTVLMRQAGLTVPGVY 151 (168)
T ss_dssp HHHHHHHHHHHHTTCCCCCCC
T ss_pred HhHHHHHHHHHHcCCCCCccc
Confidence 499999999999999987654
No 12
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=20.81 E-value=73 Score=21.34 Aligned_cols=9 Identities=56% Similarity=0.885 Sum_probs=8.5
Q ss_pred CCcccccCc
Q psy4206 69 PSHLELVYP 77 (97)
Q Consensus 69 PSHLEaVnP 77 (97)
.+|||.|=|
T Consensus 63 q~~LETViP 71 (127)
T 2ckk_A 63 QTHLETVIP 71 (127)
T ss_dssp GGGEEECCC
T ss_pred hHHcEEecC
Confidence 789999999
Done!