BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4209
(856 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/579 (41%), Positives = 328/579 (56%), Gaps = 42/579 (7%)
Query: 1 MAKLEPYXXXXXXXXXXXXQVGFT-ANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVV 59
M+K Y QVGFT +NP + RS+ YCT + K++ AP+FHVNAD+PE V
Sbjct: 372 MSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVA 431
Query: 60 SIMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKL 119
+ +L +R TFKRD FID++ YRRHGHNE D+PS TQPLMY+KIK+ + Y KL
Sbjct: 432 FVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKL 491
Query: 120 LQEKVITEDMVTLEVQAYQQKLES------EYEKSKEATRFDSAPWIDVPWEGFEKDTTL 173
QEKV T + T V Y+ L++ E+ + F +P+++ W+ E+
Sbjct: 492 EQEKVATLEDATEMVNLYRDALDAGDCVVAEW-RPMNMHSFTWSPYLNHEWD--EEYPNK 548
Query: 174 IQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIE-ENSLDWAMAEALA 232
++M +LQ LA +S P E ++ + ++ R+ M E DW AE LA
Sbjct: 549 VEM-------KRLQELAKRISTVP-EAVEMQSRVAKIYADRQAMAAGEKLFDWGGAENLA 600
Query: 233 LGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILN 292
TL+D G +RL G+DS RGTF HRHAV +Q+ G+TYTPL HI G F V++S+L+
Sbjct: 601 YATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLS 660
Query: 293 EMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH 352
E A L+FEYGY+ +P L IWEAQFGDFAN AQ V DQ+ISS KW GLV+LLPH
Sbjct: 661 EEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH 720
Query: 353 GIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHAXXXXX 412
G EGQGPEHSSAR ER+L+LC++ N V PSTP+ ++H
Sbjct: 721 GYEGQGPEHSSARLERYLQLCAEQ---------------NMQVCVPSTPAQVYHMLRRQA 765
Query: 413 XXXXXXXXXXXTPKALLRHPQVRSTFEDLSLDTKFRAYLP--DTMADRNKDKVEKYILCS 470
+PK+LLRHP S+ E+L+ T +LP + + + V++ ++CS
Sbjct: 766 LRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT----FLPAIGEIDELDPKGVKRVVMCS 821
Query: 471 GKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFG 530
GK+YYDL+E R N +AI R+EQ+ PFP++A + + +VK WCQ EP N G
Sbjct: 822 GKVYYDLLEQRRKNN-QHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQG 880
Query: 531 FWKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
W Q V+ + Y GR S+ PA G + H
Sbjct: 881 AWYCSQHHFREVIPFGAS-LRYAGRPASASPAVGYMSVH 918
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 29/203 (14%)
Query: 640 SFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSS 699
S+L+G +++E +Y+ +L +P+SV +W F + + + T + +
Sbjct: 13 SYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKD 72
Query: 700 FPRREETPIHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKT 759
R T +PD N+ + ++ L++ YR GH AN+DPLG + + K
Sbjct: 73 ASRYSST-----ISDPDTNV----KQVKVLQLINAYRFRGHQHANLDPLGL---WQQDKV 120
Query: 760 PDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGG---DQSSLKISDFIERLESVYCG 816
D P+ F DL ++ E +G + ++K+ + +E L+ YCG
Sbjct: 121 ADLD--PS-----------FHDLTEA-DFQETFNVGSFASGKETMKLGELLEALKQTYCG 166
Query: 817 PVGVEITHIKNIRRRRWLKAEVE 839
P+G E HI + +RW++ +E
Sbjct: 167 PIGAEYMHITSTEEKRWIQQRIE 189
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/579 (41%), Positives = 328/579 (56%), Gaps = 42/579 (7%)
Query: 1 MAKLEPYXXXXXXXXXXXXQVGFT-ANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVV 59
M+K Y QVGFT +NP + RS+ YCT + K++ AP+FHVNAD+PE V
Sbjct: 372 MSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVA 431
Query: 60 SIMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKL 119
+ +L +R TFKRD FID++ YRRHGHNE D+PS TQPLMY+KIK+ + Y KL
Sbjct: 432 FVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKL 491
Query: 120 LQEKVITEDMVTLEVQAYQQKLES------EYEKSKEATRFDSAPWIDVPWEGFEKDTTL 173
QEKV T + T V Y+ L++ E+ + F +P+++ W+ E+
Sbjct: 492 EQEKVATLEDATEMVNLYRDALDAGDCVVAEW-RPMNMHSFTWSPYLNHEWD--EEYPNK 548
Query: 174 IQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIE-ENSLDWAMAEALA 232
++M +LQ LA +S P E ++ + ++ R+ M E DW AE LA
Sbjct: 549 VEM-------KRLQELAKRISTVP-EAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLA 600
Query: 233 LGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILN 292
TL+D G +RL G+DS RGTF HRHAV +Q+ G+TYTPL HI G F V++S+L+
Sbjct: 601 YATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLS 660
Query: 293 EMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH 352
E A L+FEYGY+ +P L IWEAQFGDFAN AQ V DQ+ISS KW GLV+LLPH
Sbjct: 661 EEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH 720
Query: 353 GIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHAXXXXX 412
G EGQGPEHSSAR ER+L+LC++ N V PSTP+ ++H
Sbjct: 721 GYEGQGPEHSSARLERYLQLCAEQ---------------NMQVCVPSTPAQVYHMLRRQA 765
Query: 413 XXXXXXXXXXXTPKALLRHPQVRSTFEDLSLDTKFRAYLP--DTMADRNKDKVEKYILCS 470
+PK+LLRHP S+ E+L+ T +LP + + + V++ ++CS
Sbjct: 766 LRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT----FLPAIGEIDELDPKGVKRVVMCS 821
Query: 471 GKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFG 530
GK+YYDL+E R N +AI R+EQ+ PFP++A + + +VK WCQ EP N G
Sbjct: 822 GKVYYDLLEQRRKNN-QHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQG 880
Query: 531 FWKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
W Q V+ + Y GR S+ PA G + H
Sbjct: 881 AWYCSQHHFREVIPFGAS-LRYAGRPASASPAVGHMSVH 918
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 29/203 (14%)
Query: 640 SFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSS 699
S+L+G +++E +Y+ +L +P+SV +W F + + + T + +
Sbjct: 13 SYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKD 72
Query: 700 FPRREETPIHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKT 759
R T +PD N+ + ++ L++ YR GH AN+DPLG + + K
Sbjct: 73 ASRYSST-----ISDPDTNV----KQVKVLQLINAYRFRGHQHANLDPLGL---WQQDKV 120
Query: 760 PDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGG---DQSSLKISDFIERLESVYCG 816
D P+ F DL ++ E +G + ++K+ + +E L+ YCG
Sbjct: 121 ADLD--PS-----------FHDLTEA-DFQETFNVGSFASGKETMKLGELLEALKQTYCG 166
Query: 817 PVGVEITHIKNIRRRRWLKAEVE 839
P+G E HI + +RW++ +E
Sbjct: 167 PIGAEYMHITSTEEKRWIQQRIE 189
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
Length = 1113
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/578 (39%), Positives = 319/578 (55%), Gaps = 32/578 (5%)
Query: 1 MAKLEPYXXXXXXXXXXXXQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
+A L Y Q+GFT P ++RSS YCT VAK+IGAP+FHVN D+PE
Sbjct: 546 LALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAW 605
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLL 120
+ +L +RQ FK+D ID++ YRR GHNEGDDPS TQP MY+ I + + YT+ L+
Sbjct: 606 VARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALI 665
Query: 121 QEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTG 180
I+ ++ YQ +LE + + +E + + P E E D + T
Sbjct: 666 GRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIE-----PSESVEADQQIPSKLATA 720
Query: 181 CDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSG 240
D A LQ + D P E F +H ++ VL +RR+M E +DWA AE LALG+L+ G
Sbjct: 721 VDKAMLQRIGDAHLALP-EGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEG 779
Query: 241 HHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAE------AGKFHVYNSILNEM 294
+RL GQD++RGTF+ RHAV D+ TG +TPL + GKF VYNS L+E
Sbjct: 780 KLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEF 839
Query: 295 AALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI 354
AA+ FEYGYS+ +P+ +V+WEAQFGDF N AQ++ D++ISS +KW S +VLLLPHG
Sbjct: 840 AAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH 899
Query: 355 EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHAXXXXXXX 414
EGQGP+H+S R ERFL+L ++ + + PSTP+ FH
Sbjct: 900 EGQGPDHTSGRIERFLQLWAEGSMTIAM---------------PSTPANYFHLLRRHGKD 944
Query: 415 XXXXXXXXXTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTM---ADRNKDKVEKYILCSG 471
TPK++LR+ S D + ++KFR+ L + M + +++KV + +L SG
Sbjct: 945 GIQRPLIVFTPKSMLRNKAAVSDIRDFT-ESKFRSVLEEPMYTDGEGDRNKVTRLLLTSG 1003
Query: 472 KIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGF 531
KIYY+L AR A E +AI R+EQ++P P R + Y NVK+ W Q EP N G
Sbjct: 1004 KIYYEL-AARKAKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGA 1062
Query: 532 WKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
W + ++ + I R S P+SG H
Sbjct: 1063 WPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVH 1100
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 714 NPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNF 773
NPD ++ + A++ L+ YR+ GHLMA++DPL ++ F+ P +
Sbjct: 245 NPD---SIEDKNARVIELIAAYRNRGHLMADIDPL-------RLDNTRFRSHPDLDVNSH 294
Query: 774 APLLNFPDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRW 833
L DL++ + G Q K+ D + L YC VGVE THI ++RW
Sbjct: 295 G--LTLWDLDREFKV---DGFAGVQRK-KLRDILSVLRDAYCRHVGVEYTHILEPEQQRW 348
Query: 834 LKAEVE 839
++ VE
Sbjct: 349 IQERVE 354
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/578 (39%), Positives = 319/578 (55%), Gaps = 32/578 (5%)
Query: 1 MAKLEPYXXXXXXXXXXXXQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
+A L Y Q+GFT P ++RSS YCT VAK+IGAP+FHVN D+PE
Sbjct: 301 LALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAW 360
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLL 120
+ +L +RQ FK+D ID++ YRR GHNEGDDPS TQP MY+ I + + YT+ L+
Sbjct: 361 VARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALI 420
Query: 121 QEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTG 180
I+ ++ YQ +LE + + +E + + P E E D + T
Sbjct: 421 GRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIE-----PSESVEADQQIPSKLATA 475
Query: 181 CDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSG 240
D A LQ + D P E F +H ++ VL +RR+M E +DWA AE LALG+L+ G
Sbjct: 476 VDKAMLQRIGDAHLALP-EGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEG 534
Query: 241 HHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAE------AGKFHVYNSILNEM 294
+RL GQD++RGTF+ RHAV D+ TG +TPL + GKF VYNS L+E
Sbjct: 535 KLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEF 594
Query: 295 AALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI 354
AA+ FEYGYS+ +P+ +V+WEAQFGDF N AQ++ D++ISS +KW S +VLLLPHG
Sbjct: 595 AAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH 654
Query: 355 EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHAXXXXXXX 414
EGQGP+H+S R ERFL+L ++ + + PSTP+ FH
Sbjct: 655 EGQGPDHTSGRIERFLQLWAEGSMTIAM---------------PSTPANYFHLLRRHGKD 699
Query: 415 XXXXXXXXXTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTM---ADRNKDKVEKYILCSG 471
TPK++LR+ S D + ++KFR+ L + M + +++KV + +L SG
Sbjct: 700 GIQRPLIVFTPKSMLRNKAAVSDIRDFT-ESKFRSVLEEPMYTDGEGDRNKVTRLLLTSG 758
Query: 472 KIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGF 531
KIYY+L AR A E +AI R+EQ++P P R + Y NVK+ W Q EP N G
Sbjct: 759 KIYYELA-ARKAKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGA 817
Query: 532 WKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
W + ++ + I R S P+SG H
Sbjct: 818 WPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVH 855
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 720 NLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNFAPLLNF 779
++ + A++ L+ YR+ GHLMA++DPL ++ F+ P + L
Sbjct: 3 SIEDKNARVIELIAAYRNRGHLMADIDPL-------RLDNTRFRSHPDLDVNSHG--LTL 53
Query: 780 PDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVE 839
DL++ + G Q K+ D + L YC VGVE THI ++RW++ VE
Sbjct: 54 WDLDREFKV---DGFAGVQRK-KLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVE 109
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
Length = 342
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 260 AVYF--DQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQ 317
AV F D A G + + + GK V+N+ L E + F G ++ I E Q
Sbjct: 41 AVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGAT--AIAEIQ 98
Query: 318 FGDFANNAQAVFDQWISSARSKWNIDSG-------LVLLLPHGIEGQGPEHSSARPERFL 370
F D+ A FDQ ++ A +K+ SG L + P G G G ++S PE F
Sbjct: 99 FADYIFPA---FDQIVNEA-AKYRYRSGDLFNCGSLTIRSPWGCVGHGALYASQSPEAFF 154
Query: 371 ELC 373
C
Sbjct: 155 AHC 157
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLU|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V11|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V16|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1M|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1R|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1U5B|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7W|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7X|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Y|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Z|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|B Chain B, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFB|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFC|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFD|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFE|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFF|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 342
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 260 AVYF--DQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQ 317
AV F D A G + + + GK V+N+ L E + F G ++ I E Q
Sbjct: 41 AVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGAT--AIAEIQ 98
Query: 318 FGDFANNAQAVFDQWISSARSKWNIDSG-------LVLLLPHGIEGQGPEHSSARPERFL 370
F D+ A FDQ ++ A +K+ SG L + P G G G + S PE F
Sbjct: 99 FADYIFPA---FDQIVNEA-AKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFF 154
Query: 371 ELC 373
C
Sbjct: 155 AHC 157
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|D Chain D, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 350
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 260 AVYF--DQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQ 317
AV F D A G + + + GK V+N+ L E + F G ++ I E Q
Sbjct: 41 AVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGAT--AIAEIQ 98
Query: 318 FGDFANNAQAVFDQWISSARSKWNIDSG-------LVLLLPHGIEGQGPEHSSARPERFL 370
F D+ A FDQ ++ A +K+ SG L + P G G G + S PE F
Sbjct: 99 FADYIFPA---FDQIVNEA-AKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFF 154
Query: 371 ELC 373
C
Sbjct: 155 AHC 157
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 732 LHV-YRDSGHLMANVDPLGFSTPFGKIK-TPDFKRVPTQIYKNFAPLLNFPDLNKSVTLP 789
LHV RD+ +L+ +DP G S P+ K+K PD K Q K LN P N+S T
Sbjct: 18 LHVTVRDAKNLIP-MDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLN-PQWNESFTFK 75
Query: 790 EDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNFYYSL 847
+ S++I D+ + + G + ++ + + W K ++ YY++
Sbjct: 76 LKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGEYYNV 133
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 732 LHV-YRDSGHLMANVDPLGFSTPFGKIK-TPDFKRVPTQIYKNFAPLLNFPDLNKSVTLP 789
LHV RD+ +L+ +DP G S P+ K+K PD K Q K LN P N+S T
Sbjct: 19 LHVTVRDAKNLIP-MDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLN-PQWNESFTFK 76
Query: 790 EDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNFYYSL 847
+ S++I D+ + + G + ++ + + W K ++ YY++
Sbjct: 77 LKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGEYYNV 134
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 147 KSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPA 198
++ + + F +A W +P++ +K TT I G + ++L D+ SKPPA
Sbjct: 504 RAVKTSSFMTANWYQIPYDILDKITTRILSEVKGVN----RILYDVSSKPPA 551
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 719 INLSSEAAQLQNLLHV-YRDSGHLMANVDPLGFSTPFGKIK-TPDFKRVPTQIYKNFAPL 776
I L +E A + LHV RD+ +L+ DP G S P+ K+K PD K Q K
Sbjct: 9 IYLKAEVADEK--LHVTVRDAKNLIP-XDPNGLSDPYVKLKLIPDPKNESKQKTKTIRST 65
Query: 777 LNFPDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKA 836
LN P N+S T + S++I D+ + + G + ++ + W K
Sbjct: 66 LN-PQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKL 124
Query: 837 EVEKPNFYYSL 847
++ YY++
Sbjct: 125 LNQEEGEYYNV 135
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 708 IHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPT 767
I G+F+ PD+ INL + AA + + GH+ A++D + K+ DF ++ +
Sbjct: 291 IDGDFI-PDDPINLYANAADIDYIAGTNNMDGHIFASIDMPAINKGNKKVTEEDFYKLVS 349
Query: 768 QI 769
+
Sbjct: 350 EF 351
>pdb|3FRN|A Chain A, Crystal Structure Of Flagellar Protein Flga From
Thermotoga Maritima Msb8
Length = 278
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 780 PDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVE 839
PD+ K +P +G S+K++ F+E LE+ Y G E N+ R+++ VE
Sbjct: 208 PDVVKGQVVPAYVDMG----SIKVTTFVEVLENGYLG----ETVRAMNVESRKYVFGRVE 259
Query: 840 K 840
+
Sbjct: 260 R 260
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 701 PRREETPIHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFS 751
P R + + ++ + N++SE +QN L + D+ L NV +GF
Sbjct: 1107 PSRNDYTVQLKYKKNTKYFNINSEQIDVQNFLEIPEDTKKLEINVGGIGFG 1157
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 532 WKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKHYLLAALNMEKKAF----KVFLP 587
W+ +Q ++ + + + PV I R + L H + L ++ F K ++P
Sbjct: 618 WRMIQHQLQTNLSVI--PV--INRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMP 673
Query: 588 WFLVKSAQG--GIMW---KVVNLCKRVLQVTRQPSW--VQARASKWTPVERPRNPLNRDS 640
W S+ +M+ +V K+ L+ +P + + WT ERP N +++ S
Sbjct: 674 WQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWT--ERPENLMDQYS 731
Query: 641 FLNGTFA----------NYLEVMYDQWLQNP--NSVHPS 667
+N N + ++DQW+ +P N +HP+
Sbjct: 732 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN 770
>pdb|1YNF|A Chain A, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|B Chain B, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|C Chain C, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|D Chain D, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|E Chain E, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|F Chain F, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 628 PVERPRNPLNRDSFLNGTFANYLEVMYDQ---WLQNPNSVHPSWAKYFAEEAMSAPSSIA 684
P ERP P+ R +G+ LE + Q WL + +S P W A A APS+
Sbjct: 75 PHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPXW---VANAATIAPSADT 131
Query: 685 IGNPTGQSSNGVGSSFPRREETPI 708
+ + + + F R E P+
Sbjct: 132 LDGKVHLTVANLNNKFHRSLEAPV 155
>pdb|1YNH|A Chain A, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|B Chain B, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|C Chain C, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|D Chain D, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 628 PVERPRNPLNRDSFLNGTFANYLEVMYDQ---WLQNPNSVHPSWAKYFAEEAMSAPSSIA 684
P ERP P+ R +G+ LE + Q WL + +S P W A A APS+
Sbjct: 75 PHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMW---VANAATIAPSADT 131
Query: 685 IGNPTGQSSNGVGSSFPRREETPI 708
+ + + + F R E P+
Sbjct: 132 LDGKVHLTVANLNNKFHRSLEAPV 155
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 532 WKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKHYLLAALNMEKKAF----KVFLP 587
W+ +Q ++ + + + PV I R + L H + L ++ F K ++P
Sbjct: 575 WRMIQHQLQTNLSVI--PV--INRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMP 630
Query: 588 WFLVKSAQG--GIMW---KVVNLCKRVLQVTRQPSW--VQARASKWTPVERPRNPLNRDS 640
W S+ +M+ +V K+ L+ +P + + WT ERP N +++ S
Sbjct: 631 WQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWT--ERPENLMDQYS 688
Query: 641 FLNGTFA----------NYLEVMYDQWLQNP--NSVHPS 667
+N N + ++DQW+ +P N +HP+
Sbjct: 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN 727
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 532 WKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKHYLLAALNMEKKAF----KVFLP 587
W+ +Q ++ + + + PV I R + L H + L ++ F K ++P
Sbjct: 574 WRMIQHQLQTNLSVI--PV--INRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMP 629
Query: 588 WFLVKSAQG--GIMW---KVVNLCKRVLQVTRQPSW--VQARASKWTPVERPRNPLNRDS 640
W S+ +M+ +V K+ L+ +P + + WT ERP N +++ S
Sbjct: 630 WQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWT--ERPENLMDQYS 687
Query: 641 FLNGTFA----------NYLEVMYDQWLQNP--NSVHPS 667
+N N + ++DQW+ +P N +HP+
Sbjct: 688 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN 726
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,202,805
Number of Sequences: 62578
Number of extensions: 1108265
Number of successful extensions: 2370
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2333
Number of HSP's gapped (non-prelim): 32
length of query: 856
length of database: 14,973,337
effective HSP length: 107
effective length of query: 749
effective length of database: 8,277,491
effective search space: 6199840759
effective search space used: 6199840759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)