Query psy4209
Match_columns 856
No_of_seqs 480 out of 3578
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:37:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450|consensus 100.0 2E-159 3E-164 1326.9 47.4 583 1-586 425-1015(1017)
2 PRK12270 kgd alpha-ketoglutara 100.0 1E-152 2E-157 1322.2 51.0 557 1-583 671-1227(1228)
3 PRK09404 sucA 2-oxoglutarate d 100.0 3E-146 6E-151 1316.6 55.9 558 1-583 366-924 (924)
4 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2E-145 3E-150 1303.3 56.1 558 1-582 367-929 (929)
5 KOG0451|consensus 100.0 7E-143 2E-147 1170.0 33.3 568 1-583 343-913 (913)
6 COG0567 SucA 2-oxoglutarate de 100.0 1E-135 2E-140 1188.6 37.0 556 1-583 349-905 (906)
7 COG0022 AcoB Pyruvate/2-oxoglu 100.0 5.7E-74 1.2E-78 602.7 23.8 305 231-582 10-319 (324)
8 KOG0524|consensus 100.0 1.1E-59 2.3E-64 482.3 20.8 298 236-576 48-350 (359)
9 KOG0525|consensus 100.0 1.9E-57 4.2E-62 459.2 17.0 292 237-576 55-352 (362)
10 PRK11892 pyruvate dehydrogenas 100.0 6.5E-45 1.4E-49 415.5 26.2 299 234-580 153-457 (464)
11 CHL00144 odpB pyruvate dehydro 100.0 3.1E-44 6.8E-49 395.5 25.5 301 234-582 15-320 (327)
12 PLN02683 pyruvate dehydrogenas 100.0 2.7E-42 6E-47 383.6 25.8 310 231-584 35-349 (356)
13 PTZ00182 3-methyl-2-oxobutanat 100.0 5E-42 1.1E-46 381.4 26.6 303 233-582 45-352 (355)
14 PRK09212 pyruvate dehydrogenas 100.0 2.5E-41 5.5E-46 372.8 25.2 286 230-562 11-300 (327)
15 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 1.1E-38 2.4E-43 377.9 31.6 267 236-562 323-591 (617)
16 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.6E-37 3.6E-42 365.9 34.4 379 10-561 164-554 (581)
17 PRK05444 1-deoxy-D-xylulose-5- 100.0 5.2E-36 1.1E-40 354.1 31.6 399 7-581 167-576 (580)
18 COG1071 AcoA Pyruvate/2-oxoglu 100.0 8.9E-37 1.9E-41 333.8 17.6 156 11-167 189-345 (358)
19 PRK12571 1-deoxy-D-xylulose-5- 100.0 4E-34 8.6E-39 340.2 35.6 287 236-582 332-624 (641)
20 KOG0450|consensus 100.0 1.1E-35 2.4E-40 334.3 16.8 210 623-843 31-243 (1017)
21 PF00676 E1_dh: Dehydrogenase 100.0 7.3E-36 1.6E-40 325.8 13.3 145 11-156 153-299 (300)
22 PLN02234 1-deoxy-D-xylulose-5- 100.0 6.3E-33 1.4E-37 326.0 32.3 248 237-543 371-622 (641)
23 KOG0225|consensus 100.0 6E-34 1.3E-38 300.7 14.5 155 11-168 217-373 (394)
24 PLN02582 1-deoxy-D-xylulose-5- 100.0 1.4E-30 2.9E-35 308.8 34.9 272 236-567 369-645 (677)
25 TIGR03182 PDH_E1_alph_y pyruva 100.0 2.1E-32 4.7E-37 300.6 15.5 154 11-165 162-315 (315)
26 PRK05899 transketolase; Review 100.0 7.7E-31 1.7E-35 312.8 25.8 400 7-557 177-595 (624)
27 PLN02374 pyruvate dehydrogenas 100.0 1.4E-31 3.1E-36 303.1 17.3 155 12-167 254-408 (433)
28 PLN02269 Pyruvate dehydrogenas 100.0 1.3E-31 2.8E-36 298.0 16.4 152 12-167 191-344 (362)
29 COG0567 SucA 2-oxoglutarate de 100.0 6.5E-32 1.4E-36 317.7 14.0 166 636-842 4-169 (906)
30 CHL00149 odpA pyruvate dehydro 100.0 2.2E-31 4.8E-36 295.0 16.4 154 11-165 187-340 (341)
31 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 7.9E-31 1.7E-35 316.0 16.8 181 641-842 1-182 (929)
32 PRK09404 sucA 2-oxoglutarate d 100.0 5.2E-31 1.1E-35 319.1 13.8 176 637-843 9-184 (924)
33 cd02016 TPP_E1_OGDC_like Thiam 100.0 2.4E-31 5.2E-36 282.6 7.6 102 1-102 164-265 (265)
34 TIGR03181 PDH_E1_alph_x pyruva 100.0 2E-29 4.3E-34 279.9 16.7 156 11-167 174-330 (341)
35 PLN02225 1-deoxy-D-xylulose-5- 100.0 4.5E-28 9.7E-33 285.4 25.8 284 224-565 382-667 (701)
36 KOG1182|consensus 100.0 1.5E-28 3.3E-33 257.2 10.4 159 10-168 245-404 (432)
37 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.1E-27 2.4E-32 261.1 16.4 137 11-148 156-293 (293)
38 TIGR00232 tktlase_bact transke 99.9 6.7E-25 1.4E-29 262.1 35.1 411 8-530 170-608 (653)
39 cd07036 TPP_PYR_E1-PDHc-beta_l 99.9 3.1E-26 6.6E-31 229.9 12.3 157 234-426 8-167 (167)
40 PRK12270 kgd alpha-ketoglutara 99.9 1.1E-25 2.3E-30 264.4 17.9 109 723-847 384-492 (1228)
41 PF02779 Transket_pyr: Transke 99.9 9.2E-26 2E-30 228.9 10.8 176 222-432 2-178 (178)
42 PLN02790 transketolase 99.9 7.2E-21 1.6E-25 227.7 34.5 411 10-531 167-610 (654)
43 PTZ00089 transketolase; Provis 99.9 7.7E-21 1.7E-25 227.7 34.1 413 9-530 177-616 (661)
44 PRK12753 transketolase; Review 99.9 4.1E-20 9E-25 221.1 38.7 397 8-506 174-594 (663)
45 COG3958 Transketolase, C-termi 99.9 3E-21 6.4E-26 203.4 23.4 261 235-558 19-283 (312)
46 PRK12754 transketolase; Review 99.9 1.4E-19 3E-24 215.7 37.5 394 8-504 174-592 (663)
47 cd07033 TPP_PYR_DXS_TK_like Py 99.8 5.7E-20 1.2E-24 182.8 12.1 146 234-426 8-156 (156)
48 smart00861 Transket_pyr Transk 99.8 1.8E-18 3.8E-23 173.7 13.9 161 226-426 3-167 (168)
49 PRK09405 aceE pyruvate dehydro 99.7 7.8E-15 1.7E-19 177.5 34.8 277 235-556 507-831 (891)
50 TIGR03186 AKGDH_not_PDH alpha- 99.7 1.7E-14 3.8E-19 174.4 35.2 270 240-555 510-827 (889)
51 COG1154 Dxs Deoxyxylulose-5-ph 99.6 6.1E-15 1.3E-19 168.9 19.8 246 274-561 349-596 (627)
52 KOG0523|consensus 99.6 1.3E-13 2.9E-18 157.1 27.4 391 2-529 163-570 (632)
53 PRK13012 2-oxoacid dehydrogena 99.6 1.9E-12 4.1E-17 157.6 33.5 238 234-508 514-780 (896)
54 PRK05261 putative phosphoketol 99.4 9.6E-11 2.1E-15 140.9 27.2 404 5-495 188-650 (785)
55 KOG0451|consensus 99.3 4.6E-13 9.9E-18 149.7 2.5 98 725-842 53-150 (913)
56 PF02780 Transketolase_C: Tran 99.2 4.1E-12 8.8E-17 121.5 0.1 106 452-561 1-107 (124)
57 COG0021 TktA Transketolase [Ca 99.2 3.1E-08 6.8E-13 115.1 31.5 418 6-536 174-623 (663)
58 PRK07119 2-ketoisovalerate fer 98.9 3.1E-08 6.6E-13 111.3 18.4 204 286-524 51-306 (352)
59 TIGR03336 IOR_alpha indolepyru 98.8 1E-07 2.2E-12 114.3 19.0 229 292-561 54-318 (595)
60 PRK09622 porA pyruvate flavodo 98.7 8.1E-07 1.8E-11 101.8 18.3 207 292-533 64-336 (407)
61 PRK08659 2-oxoglutarate ferred 98.5 4.4E-06 9.6E-11 94.8 17.9 210 285-525 50-334 (376)
62 cd02011 TPP_PK Thiamine pyroph 98.4 6.6E-07 1.4E-11 94.1 7.3 68 4-71 107-175 (227)
63 PRK08366 vorA 2-ketoisovalerat 98.3 2.5E-05 5.5E-10 89.0 18.6 215 289-539 54-333 (390)
64 PRK09627 oorA 2-oxoglutarate-a 98.3 1.4E-05 3E-10 90.6 16.4 204 292-525 55-335 (375)
65 cd02012 TPP_TK Thiamine pyroph 98.2 3.2E-06 7E-11 91.0 8.1 81 7-90 154-234 (255)
66 TIGR03710 OAFO_sf 2-oxoacid:ac 98.2 4.9E-05 1.1E-09 90.7 18.9 219 290-539 243-537 (562)
67 cd02007 TPP_DXS Thiamine pyrop 98.1 9.7E-06 2.1E-10 84.0 7.8 69 9-87 125-194 (195)
68 PRK08367 porA pyruvate ferredo 98.0 0.0002 4.4E-09 81.8 17.3 210 290-536 56-332 (394)
69 cd06586 TPP_enzyme_PYR Pyrimid 97.7 8.7E-05 1.9E-09 72.8 8.1 116 283-426 34-154 (154)
70 TIGR00759 aceE pyruvate dehydr 97.6 0.0021 4.6E-08 78.8 18.4 232 240-515 509-774 (885)
71 cd03372 TPP_ComE Thiamine pyro 97.6 0.00036 7.8E-09 71.3 10.1 66 12-84 90-156 (179)
72 TIGR02176 pyruv_ox_red pyruvat 97.5 0.0023 5E-08 82.3 18.6 205 290-530 57-330 (1165)
73 COG4231 Indolepyruvate ferredo 97.5 0.0041 8.8E-08 73.4 18.7 243 284-564 58-338 (640)
74 cd00568 TPP_enzymes Thiamine p 97.3 0.00032 6.8E-09 69.9 5.9 66 11-82 92-168 (168)
75 COG0674 PorA Pyruvate:ferredox 97.3 0.005 1.1E-07 69.9 15.5 232 290-558 53-350 (365)
76 cd02002 TPP_BFDC Thiamine pyro 97.2 0.00075 1.6E-08 68.3 7.2 66 11-82 95-178 (178)
77 COG3957 Phosphoketolase [Carbo 97.1 0.071 1.5E-06 63.7 22.4 60 6-65 200-260 (793)
78 PRK11864 2-ketoisovalerate fer 97.0 0.0058 1.3E-07 67.3 12.1 133 8-149 118-297 (300)
79 cd02004 TPP_BZL_OCoD_HPCL Thia 96.8 0.0032 6.9E-08 63.6 7.4 66 11-82 94-171 (172)
80 cd02014 TPP_POX Thiamine pyrop 96.8 0.0033 7.2E-08 64.0 7.5 68 11-84 97-174 (178)
81 PRK07524 hypothetical protein; 96.7 0.0032 7E-08 74.8 7.7 71 12-88 454-534 (535)
82 PF00456 Transketolase_N: Tran 96.6 0.011 2.4E-07 66.3 10.7 97 7-107 170-272 (332)
83 cd02013 TPP_Xsc_like Thiamine 96.6 0.0027 5.8E-08 65.8 5.3 72 12-86 101-182 (196)
84 PRK08327 acetolactate synthase 96.4 0.0075 1.6E-07 72.4 8.4 47 34-82 520-566 (569)
85 cd02001 TPP_ComE_PpyrDC Thiami 96.2 0.017 3.7E-07 57.8 8.3 66 11-82 88-154 (157)
86 cd02005 TPP_PDC_IPDC Thiamine 96.1 0.024 5.3E-07 58.1 8.8 73 7-84 93-175 (183)
87 cd02015 TPP_AHAS Thiamine pyro 96.1 0.017 3.7E-07 59.2 7.6 45 34-84 131-175 (186)
88 cd02008 TPP_IOR_alpha Thiamine 96.0 0.024 5.3E-07 57.7 8.2 72 7-82 95-176 (178)
89 PRK07092 benzoylformate decarb 95.5 0.028 6.1E-07 66.9 7.4 66 11-82 453-529 (530)
90 cd03371 TPP_PpyrDC Thiamine py 95.5 0.062 1.3E-06 55.5 8.8 68 11-84 95-164 (188)
91 PF02775 TPP_enzyme_C: Thiamin 95.2 0.032 6.9E-07 55.1 5.6 44 33-80 110-153 (153)
92 PRK06163 hypothetical protein; 95.2 0.11 2.4E-06 54.3 9.7 82 11-103 104-189 (202)
93 TIGR03846 sulfopy_beta sulfopy 95.2 0.17 3.8E-06 51.8 11.0 67 11-83 88-156 (181)
94 cd02003 TPP_IolD Thiamine pyro 95.0 0.042 9.2E-07 57.3 6.0 72 7-84 91-185 (205)
95 cd02010 TPP_ALS Thiamine pyrop 94.9 0.083 1.8E-06 53.9 7.9 72 7-84 91-171 (177)
96 cd02006 TPP_Gcl Thiamine pyrop 94.8 0.07 1.5E-06 55.5 7.0 49 34-84 147-195 (202)
97 COG3959 Transketolase, N-termi 94.6 0.092 2E-06 55.2 7.1 75 6-83 167-241 (243)
98 cd02017 TPP_E1_EcPDC_like Thia 94.3 0.27 5.8E-06 56.1 10.7 111 7-121 174-361 (386)
99 PRK08199 thiamine pyrophosphat 93.9 0.14 3E-06 61.4 7.9 68 11-84 461-539 (557)
100 PRK06546 pyruvate dehydrogenas 93.7 0.19 4.1E-06 60.6 8.5 44 33-82 486-529 (578)
101 cd02009 TPP_SHCHC_synthase Thi 93.6 0.2 4.4E-06 50.9 7.4 71 6-82 92-174 (175)
102 COG0028 IlvB Thiamine pyrophos 93.5 0.11 2.4E-06 62.2 6.1 72 7-85 451-533 (550)
103 PRK13030 2-oxoacid ferredoxin 93.3 2.3 5E-05 55.1 17.6 236 285-557 75-368 (1159)
104 PRK08266 hypothetical protein; 93.2 0.25 5.4E-06 59.0 8.5 71 12-88 449-530 (542)
105 cd03376 TPP_PFOR_porB_like Thi 93.0 0.25 5.5E-06 52.8 7.4 57 34-94 154-211 (235)
106 cd02018 TPP_PFOR Thiamine pyro 93.0 0.37 7.9E-06 51.7 8.5 46 34-82 156-202 (237)
107 PRK06112 acetolactate synthase 92.9 0.26 5.5E-06 59.5 8.1 67 11-83 483-560 (578)
108 TIGR00118 acolac_lg acetolacta 92.9 0.19 4.1E-06 60.2 6.9 45 34-84 493-537 (558)
109 PRK09193 indolepyruvate ferred 92.9 2.6 5.7E-05 54.5 17.1 233 288-557 86-376 (1165)
110 PF01855 POR_N: Pyruvate flavo 92.5 0.13 2.8E-06 54.9 4.2 112 289-431 41-159 (230)
111 PRK13029 2-oxoacid ferredoxin 92.5 2.7 5.8E-05 54.4 16.3 222 299-557 109-379 (1186)
112 TIGR02720 pyruv_oxi_spxB pyruv 92.4 0.34 7.3E-06 58.4 8.1 72 7-82 451-531 (575)
113 PRK08155 acetolactate synthase 92.3 0.34 7.3E-06 58.2 7.9 67 11-83 465-543 (564)
114 PRK07710 acetolactate synthase 92.3 0.31 6.7E-06 58.7 7.5 45 34-84 505-549 (571)
115 PRK09628 oorB 2-oxoglutarate-a 92.2 0.4 8.7E-06 52.6 7.6 45 35-83 156-201 (277)
116 PRK11865 pyruvate ferredoxin o 92.1 1.2 2.7E-05 49.3 11.3 46 34-83 165-211 (299)
117 cd03375 TPP_OGFOR Thiamine pyr 91.7 0.7 1.5E-05 47.8 8.5 45 34-82 138-183 (193)
118 PRK11269 glyoxylate carboligas 91.6 0.43 9.3E-06 57.7 7.7 48 34-83 509-556 (591)
119 PRK06725 acetolactate synthase 91.5 0.42 9.1E-06 57.6 7.5 66 12-83 469-545 (570)
120 PRK06882 acetolactate synthase 91.5 0.49 1.1E-05 56.9 8.1 46 34-84 502-547 (574)
121 PRK06154 hypothetical protein; 91.3 0.53 1.1E-05 56.7 8.1 46 34-82 509-554 (565)
122 TIGR03297 Ppyr-DeCO2ase phosph 91.3 1.2 2.5E-05 50.9 10.3 68 11-84 268-337 (361)
123 PRK07525 sulfoacetaldehyde ace 91.3 0.32 6.9E-06 58.8 6.2 48 34-84 516-563 (588)
124 PRK08322 acetolactate synthase 91.2 0.51 1.1E-05 56.4 7.8 71 7-83 449-528 (547)
125 CHL00099 ilvB acetohydroxyacid 91.1 0.56 1.2E-05 56.7 8.0 44 34-83 512-555 (585)
126 TIGR01504 glyox_carbo_lig glyo 90.7 0.33 7.1E-06 58.7 5.5 47 34-82 508-554 (588)
127 PRK07064 hypothetical protein; 90.2 0.62 1.4E-05 55.6 7.3 71 7-83 448-528 (544)
128 TIGR03457 sulphoacet_xsc sulfo 90.0 0.7 1.5E-05 55.7 7.6 74 7-83 473-557 (579)
129 PRK07586 hypothetical protein; 90.0 0.62 1.3E-05 55.3 7.0 43 34-82 472-514 (514)
130 PRK09124 pyruvate dehydrogenas 89.4 1.1 2.4E-05 54.0 8.5 71 7-83 451-530 (574)
131 PRK08611 pyruvate oxidase; Pro 89.3 0.92 2E-05 54.8 7.8 72 7-84 451-531 (576)
132 PRK06457 pyruvate dehydrogenas 89.1 1.1 2.4E-05 53.6 8.3 70 8-83 441-519 (549)
133 PRK07979 acetolactate synthase 89.0 0.79 1.7E-05 55.3 7.0 74 7-83 464-548 (574)
134 PRK08527 acetolactate synthase 88.9 1.1 2.4E-05 53.8 8.2 45 34-84 495-539 (563)
135 PRK05778 2-oxoglutarate ferred 88.5 2.1 4.6E-05 47.6 9.3 45 34-82 157-202 (301)
136 PRK11866 2-oxoacid ferredoxin 88.5 1.4 3E-05 48.6 7.7 44 35-82 147-191 (279)
137 PRK11869 2-oxoacid ferredoxin 88.2 1.3 2.8E-05 48.8 7.3 46 34-83 147-193 (280)
138 PRK07418 acetolactate synthase 87.8 0.76 1.6E-05 55.9 5.8 44 34-83 516-559 (616)
139 PRK08978 acetolactate synthase 86.8 1.7 3.7E-05 52.0 7.9 72 7-84 444-526 (548)
140 TIGR03254 oxalate_oxc oxalyl-C 86.6 2 4.2E-05 51.7 8.3 43 34-82 495-537 (554)
141 PLN02470 acetolactate synthase 86.5 2 4.2E-05 52.1 8.3 44 34-83 514-557 (585)
142 PRK06276 acetolactate synthase 86.4 1.8 3.9E-05 52.4 7.9 43 34-82 500-542 (586)
143 PRK08273 thiamine pyrophosphat 86.2 1.8 4E-05 52.4 7.8 45 34-84 503-547 (597)
144 PRK05858 hypothetical protein; 86.1 1.9 4.1E-05 51.6 7.8 70 7-82 450-529 (542)
145 PRK09107 acetolactate synthase 86.0 1.7 3.7E-05 52.7 7.4 45 34-84 511-555 (595)
146 PRK07789 acetolactate synthase 85.2 2.3 4.9E-05 51.8 8.0 72 7-83 490-576 (612)
147 PRK06456 acetolactate synthase 85.1 2.1 4.4E-05 51.7 7.5 72 7-84 464-546 (572)
148 PRK09259 putative oxalyl-CoA d 85.0 2.3 5E-05 51.3 7.8 43 34-82 503-545 (569)
149 TIGR02418 acolac_catab acetola 84.8 3 6.4E-05 49.9 8.6 71 8-84 452-531 (539)
150 TIGR03393 indolpyr_decarb indo 84.6 2.8 6E-05 50.2 8.2 70 7-82 447-526 (539)
151 PRK12474 hypothetical protein; 84.2 2.5 5.4E-05 50.3 7.6 42 35-82 477-518 (518)
152 PRK06965 acetolactate synthase 84.0 3.2 7E-05 50.2 8.6 45 34-83 518-562 (587)
153 PRK07449 2-succinyl-5-enolpyru 82.9 2.2 4.7E-05 51.4 6.4 43 34-82 506-548 (568)
154 PRK06466 acetolactate synthase 82.5 3.2 6.9E-05 50.1 7.6 46 34-84 504-549 (574)
155 PRK08617 acetolactate synthase 82.4 4 8.7E-05 49.0 8.4 45 34-84 493-537 (552)
156 PRK11867 2-oxoglutarate ferred 81.9 8.3 0.00018 42.6 10.0 44 35-82 157-201 (286)
157 TIGR03845 sulfopyru_alph sulfo 81.6 6.5 0.00014 39.5 8.3 114 284-428 35-156 (157)
158 COG2609 AceE Pyruvate dehydrog 81.5 1E+02 0.0022 38.1 18.9 146 240-414 512-676 (887)
159 PRK06048 acetolactate synthase 81.1 4.4 9.4E-05 48.8 8.1 45 34-84 495-539 (561)
160 cd07034 TPP_PYR_PFOR_IOR-alpha 80.1 9.1 0.0002 37.9 8.7 115 283-424 41-158 (160)
161 PRK08979 acetolactate synthase 79.1 5.2 0.00011 48.3 7.8 73 7-84 464-547 (572)
162 PLN02573 pyruvate decarboxylas 78.0 6.9 0.00015 47.4 8.4 72 7-82 471-551 (578)
163 TIGR03394 indol_phenyl_DC indo 77.2 7.3 0.00016 46.7 8.3 70 8-82 446-520 (535)
164 PRK07282 acetolactate synthase 75.6 6.6 0.00014 47.4 7.4 71 7-84 461-542 (566)
165 TIGR03336 IOR_alpha indolepyru 75.5 9 0.0002 46.6 8.5 45 34-82 484-529 (595)
166 TIGR02177 PorB_KorB 2-oxoacid: 74.1 6.1 0.00013 43.7 6.0 41 37-82 145-185 (287)
167 PLN02980 2-oxoglutarate decarb 71.4 6.3 0.00014 53.5 6.4 45 34-84 846-890 (1655)
168 TIGR03297 Ppyr-DeCO2ase phosph 67.3 12 0.00027 42.7 6.7 116 290-429 32-155 (361)
169 cd03377 TPP_PFOR_PNO Thiamine 64.8 19 0.0004 41.2 7.4 46 34-83 220-267 (365)
170 PF03894 XFP: D-xylulose 5-pho 60.6 46 0.00099 34.3 8.5 117 240-363 16-143 (179)
171 COG3960 Glyoxylate carboligase 53.5 24 0.00051 39.5 5.5 80 11-92 465-565 (592)
172 PF13292 DXP_synthase_N: 1-deo 52.9 9.1 0.0002 41.7 2.3 35 44-82 235-270 (270)
173 COG4231 Indolepyruvate ferredo 50.2 19 0.00041 43.6 4.5 76 8-92 108-183 (640)
174 PF09364 XFP_N: XFP N-terminal 48.9 22 0.00047 40.5 4.5 63 6-68 187-250 (379)
175 PLN02225 1-deoxy-D-xylulose-5- 45.6 31 0.00066 42.8 5.4 42 43-88 325-367 (701)
176 TIGR02176 pyruv_ox_red pyruvat 45.3 85 0.0018 41.5 9.7 46 34-83 1020-1067(1165)
177 cd07035 TPP_PYR_POX_like Pyrim 45.2 38 0.00083 33.1 5.2 115 283-425 34-154 (155)
178 KOG1185|consensus 42.5 71 0.0015 37.8 7.4 42 36-82 518-559 (571)
179 COG1013 PorB Pyruvate:ferredox 42.0 79 0.0017 35.2 7.5 44 35-82 159-203 (294)
180 PF02776 TPP_enzyme_N: Thiamin 40.7 64 0.0014 32.4 6.2 131 274-432 31-167 (172)
181 PF04273 DUF442: Putative phos 38.8 74 0.0016 30.1 5.8 51 30-83 43-96 (110)
182 COG0075 Serine-pyruvate aminot 35.5 1.4E+02 0.0031 34.5 8.4 65 466-533 84-148 (383)
183 COG4032 Predicted thiamine-pyr 34.2 35 0.00076 33.9 2.8 115 293-431 51-168 (172)
184 COG1303 Uncharacterized protei 33.1 98 0.0021 31.4 5.7 53 27-82 14-66 (179)
185 COG1154 Dxs Deoxyxylulose-5-ph 30.8 51 0.0011 39.9 4.0 37 44-84 243-280 (627)
186 PF09851 SHOCT: Short C-termin 30.5 68 0.0015 23.4 3.2 21 117-137 9-29 (31)
187 cd07038 TPP_PYR_PDC_IPDC_like 30.4 65 0.0014 32.3 4.2 43 36-80 118-160 (162)
188 PRK08659 2-oxoglutarate ferred 30.4 1.5E+02 0.0032 34.2 7.6 80 10-92 98-179 (376)
189 smart00087 PTH Parathyroid hor 29.4 21 0.00045 27.2 0.3 18 824-841 16-33 (36)
190 KOG0400|consensus 28.8 70 0.0015 31.3 3.8 64 326-413 34-97 (151)
191 PRK08569 rpl18p 50S ribosomal 26.7 7.1E+02 0.015 26.2 10.9 94 50-145 74-192 (193)
192 cd02018 TPP_PFOR Thiamine pyro 26.5 5.4E+02 0.012 27.5 10.7 128 284-423 53-199 (237)
193 KOG4721|consensus 26.1 21 0.00046 42.8 -0.2 95 202-320 194-308 (904)
194 cd07039 TPP_PYR_POX Pyrimidine 25.7 92 0.002 31.3 4.4 43 36-80 114-156 (164)
195 cd06586 TPP_enzyme_PYR Pyrimid 23.7 2E+02 0.0044 27.6 6.3 41 40-80 112-152 (154)
196 TIGR03181 PDH_E1_alph_x pyruva 22.2 2.4E+02 0.0052 32.0 7.3 24 296-321 131-154 (341)
197 cd07035 TPP_PYR_POX_like Pyrim 21.6 2.9E+02 0.0063 26.9 6.9 42 37-80 111-153 (155)
198 cd02001 TPP_ComE_PpyrDC Thiami 20.9 3.2E+02 0.007 27.2 7.2 29 392-422 122-150 (157)
199 PF02776 TPP_enzyme_N: Thiamin 20.4 3.4E+02 0.0073 27.2 7.3 44 35-80 115-159 (172)
No 1
>KOG0450|consensus
Probab=100.00 E-value=1.6e-159 Score=1326.88 Aligned_cols=583 Identities=47% Similarity=0.869 Sum_probs=558.8
Q ss_pred CCCCCCCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 1 ls~l~~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
||.||+|+|||+||||.|||+||||.+..+||++||+|+|+..+.|+|||||||||||..+++.|.|++..|+++|+||+
T Consensus 425 ls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDl 504 (1017)
T KOG0450|consen 425 LSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDL 504 (1017)
T ss_pred cccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4209 81 IGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWI 160 (856)
Q Consensus 81 ~tYR~~GHse~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~ 160 (856)
+|||++||||.|.|+||||.||+.|++++|+++.|.++|+++|.+|++++++..+++...+++|++.++...+-...+|+
T Consensus 505 VcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL 584 (1017)
T KOG0450|consen 505 VCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWL 584 (1017)
T ss_pred EEEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876668999
Q ss_pred cCCcCCCCCccc---cccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHHHHHhhhh
Q psy4209 161 DVPWEGFEKDTT---LIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLL 237 (856)
Q Consensus 161 ~~~~~~~~~~~~---~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~la~~sll 237 (856)
+..|.+++.|.. ....+.||+..+.|+.||.++.++| |+|++|+.|+|+|+.|.+|++++.||||+||+|||||||
T Consensus 585 ~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~P-E~F~~Hrgl~Ril~~R~~mi~~~~iDwal~EalAFgsLl 663 (1017)
T KOG0450|consen 585 DSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVP-EGFKIHRGLKRILKNRAQMIKSEGVDWALAEALAFGSLL 663 (1017)
T ss_pred cCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCC-cccchhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Confidence 999999998742 2235679999999999999999999 999999999999999999999999999999999999999
Q ss_pred ccCCeEEEeeccCCCCcccccceeeeecCCC-CEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecc
Q psy4209 238 DSGHHIRLIGQDSKRGTFSHRHAVYFDQATG-NTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEA 316 (856)
Q Consensus 238 ~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~g-g~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~ 316 (856)
.||.+|||+||||+||||||||+|||||+.+ .+|.|+++|+..++++.|.||.|||+||||||+||||+.|+.|||||+
T Consensus 664 ~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEA 743 (1017)
T KOG0450|consen 664 KEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEA 743 (1017)
T ss_pred hcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeeh
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcchhh---hhhhhcCCCCe
Q psy4209 317 QFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCVEL---DMKKQLFDANW 393 (856)
Q Consensus 317 qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~~~---~~~~~~~~~gl 393 (856)
|||||+|+||++|||||++|+.||-++++|||+|||||+|+||||||+|+|||||||+|||+++|. ++..+.+..||
T Consensus 744 QFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw 823 (1017)
T KOG0450|consen 744 QFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNW 823 (1017)
T ss_pred hhccccccchhhHHhHhccchhhhhhhcCeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999994 45677899999
Q ss_pred EEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCccc-ccCCCCceEEEEcCCc
Q psy4209 394 FVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMA-DRNKDKVEKYILCSGK 472 (856)
Q Consensus 394 ~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~-~~~~~~v~tvv~~~g~ 472 (856)
+||+|||||||||+|||||++.||||||+|+||+|||||.|.|+++||.++..|+.+|.+... ...+.+|++||+||||
T Consensus 824 ~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGk 903 (1017)
T KOG0450|consen 824 QVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGK 903 (1017)
T ss_pred EEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEEEecce
Confidence 999999999999999999999999999999999999999999999999666689999977432 2578899999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEE
Q psy4209 473 IYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCY 552 (856)
Q Consensus 473 v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~ 552 (856)
|||+|.++|++.+...+|+|+|+|||+|||++.|.++++||+++ |+|||||||+|||+|+||.|||...+..+..+++|
T Consensus 904 VyydL~k~Rk~~~~~~~vAi~RvEQl~PFp~dli~~e~~~Ypna-EivWcQEE~~NmG~w~Yv~PRl~T~l~~~~r~v~Y 982 (1017)
T KOG0450|consen 904 VYYDLTKERKEVGLEGDVAITRVEQLSPFPFDLIQQELNKYPNA-EIVWCQEEHKNMGAWDYVEPRLRTALKRLARPVKY 982 (1017)
T ss_pred EehhhhHHHHhcCcccceeEEEeeccCCCcHHHHHHHHHhCCCc-eeeehhhhhcccCchhhcchHHHHHHHhhCCccee
Confidence 99999999998775589999999999999999999999999995 69999999999999999999999998776779999
Q ss_pred ecCCCCCCCCCCchhhHHHHHHHchHHhhhccCC
Q psy4209 553 IGRDPSSVPASGLQAKHYLLAALNMEKKAFKVFL 586 (856)
Q Consensus 553 vgr~~~~~pa~g~~~~h~~e~~~i~~~~a~~~~~ 586 (856)
+||+++++||+|....|..||+.+ +++||+...
T Consensus 983 ~GR~Psaa~AtGnk~~Hl~eq~~~-l~~a~~~~~ 1015 (1017)
T KOG0450|consen 983 AGRLPSAAPATGNKQTHLAEQKAF-LNKAFQLDP 1015 (1017)
T ss_pred cccCCcccccccchhHHHHHHHHH-HHHHhccCC
Confidence 999999999999999999999999 999998653
No 2
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1e-152 Score=1322.21 Aligned_cols=557 Identities=45% Similarity=0.761 Sum_probs=529.6
Q ss_pred CCCCCCCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 1 ls~l~~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
||+|.||+||||||||+||||||||++..+||+.|++|+||++++|++|||||||+||+++++.|++||++|+|||+||+
T Consensus 671 la~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdl 750 (1228)
T PRK12270 671 LSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDL 750 (1228)
T ss_pred HHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4209 81 IGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWI 160 (856)
Q Consensus 81 ~tYR~~GHse~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~ 160 (856)
+|||++||||+|||+++||.||+.+.+++++.++|.+.|+.+|.+|++|++++.++++.++++++...++.....+.. .
T Consensus 751 vcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~-~ 829 (1228)
T PRK12270 751 VCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEP-P 829 (1228)
T ss_pred EEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765432220 0
Q ss_pred cCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHHHHHhhhhccC
Q psy4209 161 DVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSG 240 (856)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~la~~sll~eg 240 (856)
..+ ...........|.++.+.|+.|+++..++| |+|++||+|+++|++|.+|..++.||||++|.|||||||.||
T Consensus 830 ~~~----~~~~~~~~~~~Tav~~~~l~~i~da~~~~P-egFt~Hpkl~~~l~~R~~m~~~g~iDWa~gEllAfGsLl~eG 904 (1228)
T PRK12270 830 ESV----ESDQGPPAGVDTAVSAEVLERIGDAHVNLP-EGFTVHPKLKPLLEKRREMAREGGIDWAFGELLAFGSLLLEG 904 (1228)
T ss_pred CCc----cccccCCCCCCCCCCHHHHHHHHHHhccCC-CCCccChhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcC
Confidence 000 011112335689999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccchh
Q psy4209 241 HHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGD 320 (856)
Q Consensus 241 ~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgD 320 (856)
.+|||+|||++||||+||||||||.++|..|.|+++|.+.+|+|.|+||+|||+|.||||||||+..|..||+||+||||
T Consensus 905 ~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGD 984 (1228)
T PRK12270 905 TPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGD 984 (1228)
T ss_pred ceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCC
Q psy4209 321 FANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPST 400 (856)
Q Consensus 321 F~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pst 400 (856)
|+||||.+||+||+|++.|||++|++||+|||||+||||+|||+|||||||||+| .||.|++|||
T Consensus 985 F~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHGyEGQGPdHSSaRiERfLqlcAe---------------~nm~Va~psT 1049 (1228)
T PRK12270 985 FANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSSARIERFLQLCAE---------------GNMTVAQPST 1049 (1228)
T ss_pred cccchHHHHHHHHhhhHhhhccccceEEEccCCcCCCCCCcchHHHHHHHHhhcc---------------CCeEEEccCC
Confidence 9999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcHHHHHHHH
Q psy4209 401 PSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIEA 480 (856)
Q Consensus 401 pad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v~~~l~~a 480 (856)
||+||||||||...+.++|||+|+||+|||+|.|+|+++|| .++.|+++|+++.+ ..+.+|++||+|||||||+|.++
T Consensus 1050 PA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedF-T~g~F~pVi~D~~~-~~~~~V~RVlLcSGKvYYdL~a~ 1127 (1228)
T PRK12270 1050 PANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDF-TEGKFRPVIDDPTV-DDGAKVRRVLLCSGKLYYDLAAR 1127 (1228)
T ss_pred hHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHh-ccCCceecCCCCCC-CCccceeEEEEEcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999 79999999999986 45667999999999999999999
Q ss_pred HHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCCCCC
Q psy4209 481 RDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDPSSV 560 (856)
Q Consensus 481 ~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~~~~ 560 (856)
|++.+. .+++|||+|||||||.+.|.+.|.+|+++++++||||||.|||+|.++...+.+.+.. ..+++||+||++++
T Consensus 1128 R~k~~~-~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~~~l~~-~~~lr~VsRpasas 1205 (1228)
T PRK12270 1128 REKDGR-DDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLPELLPD-GRRLRRVSRPASAS 1205 (1228)
T ss_pred HHhcCC-CceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCchhhhhhhHhhccC-CCCceEecCCcccC
Confidence 988776 8899999999999999999999999999999999999999999999999999998853 45799999999999
Q ss_pred CCCCchhhHHHHHHHchHHhhhc
Q psy4209 561 PASGLQAKHYLLAALNMEKKAFK 583 (856)
Q Consensus 561 pa~g~~~~h~~e~~~i~~~~a~~ 583 (856)
||+|+.+.|..||+.| |++||.
T Consensus 1206 PAtGs~kvH~~EQ~~L-l~~Af~ 1227 (1228)
T PRK12270 1206 PATGSAKVHAVEQQEL-LDEAFA 1227 (1228)
T ss_pred CCccchhhHHHHHHHH-HHHHhc
Confidence 9999999999999999 999996
No 3
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=2.6e-146 Score=1316.56 Aligned_cols=558 Identities=50% Similarity=0.849 Sum_probs=527.4
Q ss_pred CCCCCCCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 1 ls~l~~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
|+.|.+|.|||||||||||||||||++++++++.+++|+|++||||++|||||||+||++|+++|++|+|+|+||+|||+
T Consensus 366 lA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~ 445 (924)
T PRK09404 366 LSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDL 445 (924)
T ss_pred HHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4209 81 IGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWI 160 (856)
Q Consensus 81 ~tYR~~GHse~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~ 160 (856)
+|||++|||++|+|.||+|+||+.|+++++++.+|+++|+++|++|++++++|+++++++|++|+++|++. .+..++
T Consensus 446 ~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~---~~~~~~ 522 (924)
T PRK09404 446 VCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWL 522 (924)
T ss_pred EEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---Cccccc
Confidence 99999999999999999999999999764445999999999999999999999999999999999999986 245667
Q ss_pred cCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhh-cchhhHHHHHHHHhhhhcc
Q psy4209 161 DVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEE-NSLDWAMAEALALGTLLDS 239 (856)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~-~~idw~~aE~la~~sll~e 239 (856)
...|+.+..+. .....+|+++.+.|+.++++++++| ++|++||+|+|++++|.+|+++ ..||||+||+|||||||.+
T Consensus 523 ~~~~~~~~~~~-~~~~~~t~v~~~~l~~~~~~~~~~P-~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~ 600 (924)
T PRK09404 523 AGDWSPYLGHE-WDDPVDTGVPLERLKELAEKLTTVP-EGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDE 600 (924)
T ss_pred ccccccccccc-cccccCCCCCHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhC
Confidence 78888655443 2334689999999999999999999 9999999999999999999977 6799999999999999999
Q ss_pred CCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccch
Q psy4209 240 GHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFG 319 (856)
Q Consensus 240 g~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfg 319 (856)
|++|||+||||+||||||||||+|||++||+|++|+||.++||++||+||||||+||+|||||||+.|+||++|||+|||
T Consensus 601 ~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfg 680 (924)
T PRK09404 601 GYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFG 680 (924)
T ss_pred CCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecC
Q psy4209 320 DFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPS 399 (856)
Q Consensus 320 DF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~ps 399 (856)
||+|+||.+|||||++++.||+.++|||||+||||+|+||+|||+|+|||||+|++ |||+||+||
T Consensus 681 DF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G~~g~g~~hsS~~~E~~l~~~~~---------------~gl~Vv~ps 745 (924)
T PRK09404 681 DFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHGYEGQGPEHSSARLERFLQLCAE---------------DNMQVCNPT 745 (924)
T ss_pred ccccchHHHHHHHHHHHHHHhcCccCeEEEecCcCCCCChhhhccCHHHHHHhCCC---------------CCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcHHHHHHH
Q psy4209 400 TPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIE 479 (856)
Q Consensus 400 tpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v~~~l~~ 479 (856)
||+|||||||+|+.+.++||||||+||+|||++.++|+++|| +.+.|++||+++.+ +++.+|+++|+|+|++||++.+
T Consensus 746 tpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~-~~~~f~~vi~~~~~-~~~~~v~r~iv~~Gk~~~~~~~ 823 (924)
T PRK09404 746 TPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEEL-AEGSFQPVIGDIDE-LDPKKVKRVVLCSGKVYYDLLE 823 (924)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHc-CCCCceeecccccc-cCccceeEEEEEcCHHHHHHHH
Confidence 999999999999877678999999999999999999999999 77779999999873 6788998899999999999999
Q ss_pred HHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCCCC
Q psy4209 480 ARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDPSS 559 (856)
Q Consensus 480 a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~~~ 559 (856)
++++.+. .+|+|||||||+|||+++|.++|+||+++.++|||||||+|||+|.||.++|.+.+.. ...++|+|||.++
T Consensus 824 a~~~~~~-~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~~~-~~~~~y~gR~~~a 901 (924)
T PRK09404 824 ARRKRGI-DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVLPE-GQKLRYAGRPASA 901 (924)
T ss_pred HHHhCCC-CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHhcc-CCeeEEECCCCcC
Confidence 8887664 6999999999999999999999999998777999999999999999999999998753 2469999999999
Q ss_pred CCCCCchhhHHHHHHHchHHhhhc
Q psy4209 560 VPASGLQAKHYLLAALNMEKKAFK 583 (856)
Q Consensus 560 ~pa~g~~~~h~~e~~~i~~~~a~~ 583 (856)
+||+|+.+.|+.||++| |++||+
T Consensus 902 spA~G~~~~H~~e~~~~-i~~a~~ 924 (924)
T PRK09404 902 SPAVGYMSLHKKQQEAL-VEDALG 924 (924)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHhC
Confidence 99999999999999999 999984
No 4
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.6e-145 Score=1303.28 Aligned_cols=558 Identities=47% Similarity=0.779 Sum_probs=517.1
Q ss_pred CCCCCCCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 1 ls~l~~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
|+.|.+|.|||+|||||||||||||++++++++.+++|+|++||||++|||||||+||++|+++|++|+|+|+||+|||+
T Consensus 367 lA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~ 446 (929)
T TIGR00239 367 MSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDL 446 (929)
T ss_pred HHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4209 81 IGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWI 160 (856)
Q Consensus 81 ~tYR~~GHse~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~ 160 (856)
+|||++|||++|+|.+|+|+||+.|+++++++.+|+++|+++|++|++++++|+++++++|++|++.++..+.|...
T Consensus 447 ~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~--- 523 (929)
T TIGR00239 447 VGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTA--- 523 (929)
T ss_pred EeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCcccc---
Confidence 99999999999999977889999998755445999999999999999999999999999999999999876654332
Q ss_pred cCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHH-HHHhhh-cchhhHHHHHHHHhhhhc
Q psy4209 161 DVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQR-RKMIEE-NSLDWAMAEALALGTLLD 238 (856)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r-~~~~~~-~~idw~~aE~la~~sll~ 238 (856)
...|..+.... .....+|+++.+.|+.++.+++++| ++|++|++|+|+++.| .+|.++ +.+||++||+|||+++|.
T Consensus 524 ~~~~~~~~~~~-~~~~~~t~v~~~~l~~l~~~~~~~P-~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~ 601 (929)
T TIGR00239 524 SFTWSPELNHE-WDEEYPNKVEMKRLQELAKRISEVP-EGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVD 601 (929)
T ss_pred ccccccccccc-cccCCCCCCCHHHHHHHHHHhccCC-CCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh
Confidence 12455443221 1224579999999999999999999 9999999999999999 888877 669999999999999999
Q ss_pred cCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccc
Q psy4209 239 SGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQF 318 (856)
Q Consensus 239 eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qf 318 (856)
+|++|||+||||+||||||||||||||++||+|+||+||.++||++||+||||||+||+|||||||+.|+|||+|||+||
T Consensus 602 ~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qf 681 (929)
T TIGR00239 602 DGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQF 681 (929)
T ss_pred cCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEec
Q psy4209 319 GDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYP 398 (856)
Q Consensus 319 gDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~p 398 (856)
|||+|+||++|||||++++.||+.++|||||+||||+|+||+|||+|+|||||||.+ |||+||+|
T Consensus 682 gDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~~g~g~~hsS~~~E~~lql~~~---------------~gl~Vv~p 746 (929)
T TIGR00239 682 GDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHGYEGQGPEHSSGRLERFLQLAAE---------------QNMQVCVP 746 (929)
T ss_pred cchhcchHHHHHHHHHHHHHHhcCccCeEEEecCcCCCCCchhhccCHHHHHHHhCC---------------CCCEEEec
Confidence 999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred CCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCccc---ccCCCCceEEEEcCCcHHH
Q psy4209 399 STPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMA---DRNKDKVEKYILCSGKIYY 475 (856)
Q Consensus 399 stpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~---~~~~~~v~tvv~~~g~v~~ 475 (856)
|||+|||||||||+.+.++|||||||||+|||++.|+|+++|| |++.|++||++... .+...+|++||+|||||||
T Consensus 747 stpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~-~~~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg~v~~ 825 (929)
T TIGR00239 747 TTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEEL-AEGTFQPVIGEIEESGLSLDPEGVKRLVLCSGKVYY 825 (929)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccC-CCCCcccccccccccccccCccCCcEEEEECchHHH
Confidence 9999999999987777679999999999999999999999999 88899999976431 0245688779999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecC
Q psy4209 476 DLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGR 555 (856)
Q Consensus 476 ~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr 555 (856)
+|.+++.+.+ +++|||||||||+|||+++|.++|+||++++++|||||||+|||+|+||.++|.+.+.. ...++|+||
T Consensus 826 ~l~~~~~~~~-~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~~-~~~l~y~gR 903 (929)
T TIGR00239 826 DLHEQRRKNG-QKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIPE-GVSVRYAGR 903 (929)
T ss_pred HHHHHHHhcC-CCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhcc-CCceEEeCC
Confidence 9999776544 49999999999999999999999999999988999999999999999999999988743 236999999
Q ss_pred CCCCCCCCCchhhHHHHHHHchHHhhh
Q psy4209 556 DPSSVPASGLQAKHYLLAALNMEKKAF 582 (856)
Q Consensus 556 ~~~~~pa~g~~~~h~~e~~~i~~~~a~ 582 (856)
|.+|+||+|+.+.|+.||++| |++||
T Consensus 904 ~~~aspA~G~~~~H~~eq~~l-i~~a~ 929 (929)
T TIGR00239 904 PASASPAVGYMSLHQKQQQDL-LNDAL 929 (929)
T ss_pred CCCCCCCCCCHHHHHHHHHHH-HHHhC
Confidence 999999999999999999999 99987
No 5
>KOG0451|consensus
Probab=100.00 E-value=7.4e-143 Score=1170.01 Aligned_cols=568 Identities=42% Similarity=0.740 Sum_probs=543.0
Q ss_pred CCCCCCCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 1 ls~l~~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
||++|+|++||+||+|.|||+|||||.++.||+.||+|+||.++.|++||||+||++|.+|++.|.+|.|+|+++|||++
T Consensus 343 ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL 422 (913)
T KOG0451|consen 343 LSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDL 422 (913)
T ss_pred hccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeeh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4209 81 IGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWI 160 (856)
Q Consensus 81 ~tYR~~GHse~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~ 160 (856)
.|||+.||||.|+|.||+|.||+.++++..+...|.++|+++|++|+++++++.+++.+.+.+.++.+....+|+ ..+
T Consensus 423 ~CfRrwgHnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~--~~~ 500 (913)
T KOG0451|consen 423 NCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP--SYF 500 (913)
T ss_pred HHHHHhccccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCc--hhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988876654 357
Q ss_pred cCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHH-HHHHHHHHhhh-cchhhHHHHHHHHhhhhc
Q psy4209 161 DVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQR-VLNQRRKMIEE-NSLDWAMAEALALGTLLD 238 (856)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~-~l~~r~~~~~~-~~idw~~aE~la~~sll~ 238 (856)
..-|.++..+...+..++||++.+.|+.+|..++++| ++|++|+.|.| ..+.|.+.++. .+|||||||+||+||||.
T Consensus 501 ~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vP-edf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~ 579 (913)
T KOG0451|consen 501 EKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVP-EDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLY 579 (913)
T ss_pred HHhhhhhccChhhhcccccCcchHHHHHhccCceecc-hhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHh
Confidence 7889999887767789999999999999999999999 99999999998 57778776666 899999999999999999
Q ss_pred cCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccc-cCCcEEEccCcchHHHHHHHhhhccCCCCcceeeccc
Q psy4209 239 SGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAE-AGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQ 317 (856)
Q Consensus 239 eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~-~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~q 317 (856)
+|++|||+||||||||||||||++.||.|..+|.|++++... .|...|.||+|||.||+|||||||+.+|+.|+|||+|
T Consensus 580 qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQ 659 (913)
T KOG0451|consen 580 QGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQ 659 (913)
T ss_pred ccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCcccceeehhh
Confidence 999999999999999999999999999999999999999875 4789999999999999999999999999999999999
Q ss_pred chhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEe
Q psy4209 318 FGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLY 397 (856)
Q Consensus 318 fgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~ 397 (856)
||||+||||++||.||++++.||..+++|||+|||||+|+||+|||||||||||||+..++.++++ ..||.||+
T Consensus 660 FGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E~~vDGd------~VNm~vvn 733 (913)
T KOG0451|consen 660 FGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKETSVDGD------SVNMHVVN 733 (913)
T ss_pred hcccccCceEEEeeeecccchhhhhhCCeEEEccCCcCCCCCccchhhHHHHHHHhccccccCCCc------ceeEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999988766654 37999999
Q ss_pred cCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcHHHHH
Q psy4209 398 PSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDL 477 (856)
Q Consensus 398 pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v~~~l 477 (856)
||||||||||||||+.+++|||||+..||.|||+|.++|+++||.|++.|..+||+.. ..+.+|++||+||||.||.|
T Consensus 734 PTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~--~~p~kvkkvifcSGKH~y~l 811 (913)
T KOG0451|consen 734 PTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTI--AKPEKVKKVIFCSGKHYYTL 811 (913)
T ss_pred CCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCccccccccccc--cChhHheEEEEecCcchhhH
Confidence 9999999999999999999999999999999999999999999999999999999985 57899999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCC
Q psy4209 478 IEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDP 557 (856)
Q Consensus 478 ~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~ 557 (856)
+++|++.|..+.++|||+|.|+|||.+.+.+.++||++++++||.||||+|||+|++|.||+...+. ..++|+|||+
T Consensus 812 ~k~Re~rgakd~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWsFVrPRFEn~lg---~~L~~~GRpe 888 (913)
T KOG0451|consen 812 AKEREKRGAKDTVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFVRPRFENLLG---QQLHYCGRPE 888 (913)
T ss_pred HHHHHhcccccceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcceeechHHHHHhh---hhheecCCCC
Confidence 9999988876789999999999999999999999999999999999999999999999999998875 4699999999
Q ss_pred CCCCCCCchhhHHHHHHHchHHhhhc
Q psy4209 558 SSVPASGLQAKHYLLAALNMEKKAFK 583 (856)
Q Consensus 558 ~~~pa~g~~~~h~~e~~~i~~~~a~~ 583 (856)
.|.||||+++.|+.|.++| +++.|.
T Consensus 889 lp~pAtgIG~vH~~e~eei-va~tFa 913 (913)
T KOG0451|consen 889 LPTPATGIGKVHKREVEEI-VAATFA 913 (913)
T ss_pred CCCccccchhhhhhhHHHH-HhhccC
Confidence 9999999999999999999 988773
No 6
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.1e-135 Score=1188.59 Aligned_cols=556 Identities=49% Similarity=0.840 Sum_probs=531.4
Q ss_pred CCCCCCCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 1 ls~l~~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
||+++||+|||+||||.|||+||||++.++||++||+|+||++++|++||||+||+||..+++.|++||.+|++|++|++
T Consensus 349 ls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDl 428 (906)
T COG0567 349 LSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDL 428 (906)
T ss_pred hhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4209 81 IGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWI 160 (856)
Q Consensus 81 ~tYR~~GHse~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~ 160 (856)
+|||++||||+|+|++|+|.||+.|++|+.+.+.|.++|+++|++++++++.+.+++++.++..+...+... ...++
T Consensus 429 vcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~---~~~~~ 505 (906)
T COG0567 429 VCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYK---EMDWL 505 (906)
T ss_pred ccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHHH---hhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999988877665 24567
Q ss_pred cCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhh-cchhhHHHHHHHHhhhhcc
Q psy4209 161 DVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEE-NSLDWAMAEALALGTLLDS 239 (856)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~-~~idw~~aE~la~~sll~e 239 (856)
...|.++.... . ...+|+++.+.|+.|+.+++++| ++|++|++++++++.|.+|.++ .++||+|||.|||+|||.+
T Consensus 506 ~~~~~~~~~~~-~-~~~~t~v~~~~L~~L~~kl~~~P-e~f~~h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~e 582 (906)
T COG0567 506 EGDWSGYLNAG-L-RHVDTGVPKKTLKELGKKLCTIP-EGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDE 582 (906)
T ss_pred ccccccccCCc-c-cccccccCHHHHHHHHHHhhcCC-cceehhHHHHHHHHHHHHHhccccccchhHHHHhcccceecc
Confidence 77888877654 2 46689999999999999999999 9999999999999999999988 8999999999999999999
Q ss_pred CCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccch
Q psy4209 240 GHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFG 319 (856)
Q Consensus 240 g~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfg 319 (856)
|++||++|||++||||+|||+|+|||.+|..|.|+++|+..+|.+.|+||||||+|++|||||||+..|+.++|||+|||
T Consensus 583 G~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFG 662 (906)
T COG0567 583 GHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFG 662 (906)
T ss_pred CCccccccccCCCcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecC
Q psy4209 320 DFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPS 399 (856)
Q Consensus 320 DF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~ps 399 (856)
||+|+||++|||||++++.||++.|+||++|||||+||||||||+|+|||||||+| .||+||+||
T Consensus 663 DFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgyEGQGPEHSSaRlER~LQLcaE---------------~NmqV~~ps 727 (906)
T COG0567 663 DFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGYEGQGPEHSSARLERFLQLCAE---------------NNMQVVVPS 727 (906)
T ss_pred ccccCCeeeeccccccHHHHHHHhcCceEEccCCCCCCCCcCccchhHHHHHhhHH---------------hCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred CcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcHHHHHHH
Q psy4209 400 TPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIE 479 (856)
Q Consensus 400 tpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v~~~l~~ 479 (856)
||+|+||+||||+.+..++|||+|+||+|||++.++|+++|+ .++.|+++|++... ...++++||+|||||||+|.+
T Consensus 728 tpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el-~~~~F~~vl~d~~~--~~~~v~rvvlcSGKvyydl~~ 804 (906)
T COG0567 728 TPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEEL-TEGTFQPVLEDIDE--LDPKVKRVVLCSGKVYYDLLE 804 (906)
T ss_pred cHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhh-chhhhhhhhccccc--cccceeeEEeeccchHHHHHH
Confidence 999999999999999999999999999999999999999999 66799999999732 334499999999999999999
Q ss_pred HHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCCCC
Q psy4209 480 ARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDPSS 559 (856)
Q Consensus 480 a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~~~ 559 (856)
.+++.+. .+++|||+|||||||.+.|.+.+++|++.+++|||||||+|||+|.++.+.+.+.+... ..++|+|||.++
T Consensus 805 ~r~~~g~-~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~l~~~l~~~-~~l~yagRp~sa 882 (906)
T COG0567 805 QREKDGR-DDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHLEEVLPEG-DKLRYAGRPASA 882 (906)
T ss_pred HHhhcCC-cceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHHHHHHHHHHhhccc-chhcccCCCccc
Confidence 9987774 89999999999999999999999999999999999999999999999999999988543 349999999999
Q ss_pred CCCCCchhhHHHHHHHchHHhhhc
Q psy4209 560 VPASGLQAKHYLLAALNMEKKAFK 583 (856)
Q Consensus 560 ~pa~g~~~~h~~e~~~i~~~~a~~ 583 (856)
+||+|+...|++||+.+ +++||.
T Consensus 883 SpA~G~~~~h~~eq~~l-~~dal~ 905 (906)
T COG0567 883 SPAVGSMSVHQKQQEKL-LEDALG 905 (906)
T ss_pred CcccccHHHHHHHHHHH-hHhhhc
Confidence 99999999999999999 999986
No 7
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.7e-74 Score=602.71 Aligned_cols=305 Identities=17% Similarity=0.191 Sum_probs=279.2
Q ss_pred HHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCc
Q psy4209 231 LALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNF 310 (856)
Q Consensus 231 la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~ 310 (856)
.|....|..+.+|+|+||||+. +||+|++|+||+++||+.||+||||||.||+|.++|+|+.|+||
T Consensus 10 ~Am~~eM~rD~~V~v~GEDVg~--------------~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrP 75 (324)
T COG0022 10 EAMDEEMERDERVVVLGEDVGV--------------YGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRP 75 (324)
T ss_pred HHHHHHHhcCCCEEEEcccccc--------------cCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcc
Confidence 4445566789999999999988 99999999999999999999999999999999999999999999
Q ss_pred ceeecccchhhHHhHHHHHHHHHHhhhhhcCC--ccCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhhh
Q psy4209 311 LVIWEAQFGDFANNAQAVFDQWISSARSKWNI--DSGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKKQ 387 (856)
Q Consensus 311 l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~--~~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~ 387 (856)
|+ |+||.||+..|+|||.|++++.+||+|+ ++|||+|.|.|. .+.|++|||+ +| ++|
T Consensus 76 iv--Eiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs-~e-----------------a~f 135 (324)
T COG0022 76 IV--EIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQS-LE-----------------ALF 135 (324)
T ss_pred eE--EEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCC-HH-----------------HHH
Confidence 99 9999999999999999999999999998 599999999988 6889999993 34 788
Q ss_pred cCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEE
Q psy4209 388 LFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYI 467 (856)
Q Consensus 388 ~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv 467 (856)
+|+||||||+||||+||+|||+++|+ ++|||||||||.||+... .|+ |++.|.+|||+|.+.++|+|| |||
T Consensus 136 ~h~PGlKVV~PStpyDAKGLL~aAIr--d~dPViflE~k~lY~~~~-----~eV-P~~~Y~iPlGkA~i~reG~Dv-Tiv 206 (324)
T COG0022 136 AHIPGLKVVMPSTPYDAKGLLKAAIR--DPDPVIFLEHKRLYRSFK-----GEV-PEEDYTIPLGKAKIVREGSDV-TIV 206 (324)
T ss_pred hcCCCceEEecCChHHHHHHHHHHhc--CCCCEEEEecHHHhcccc-----cCC-CCCCccccccceeeEecCCce-EEE
Confidence 99999999999999999999999995 599999999999999422 378 899999999999998888988 999
Q ss_pred EcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhh-hhC
Q psy4209 468 LCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVM-EIT 546 (856)
Q Consensus 468 ~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~-~~~ 546 (856)
+||.||+.+|+||+++.+.|+++||||||+|+|||+++|.+||+||+| +|+|||.++++|+++||++.|+|.+ ..|
T Consensus 207 tyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~PlD~etIi~SvkKTgR---~viV~Ea~~~~g~gaei~A~i~e~~f~~L 283 (324)
T COG0022 207 TYGAMVHTALEAAEELEKEGISAEVIDLRTLSPLDKETIIASVKKTGR---LVIVHEAPKTGGIGAEIAALIAEEAFDYL 283 (324)
T ss_pred EechHHHHHHHHHHHHhhcCCCeEEEeccccCccCHHHHHHHHHhhCc---EEEEEeccccCChHHHHHHHHHHHHHHhh
Confidence 999999999999988665579999999999999999999999999999 9999999999999999999999987 458
Q ss_pred CCCeEEecCCCCCC-CCCCchhhHHHHHHHchHHhhh
Q psy4209 547 TDPVCYIGRDPSSV-PASGLQAKHYLLAALNMEKKAF 582 (856)
Q Consensus 547 ~~~~~~vgr~~~~~-pa~g~~~~h~~e~~~i~~~~a~ 582 (856)
++|+.|++-++.|. ++.-++..+.+..++| ++.+-
T Consensus 284 dAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I-~~av~ 319 (324)
T COG0022 284 DAPILRVAGPDTPVPYSAALEKAYLPNPERI-VAAVK 319 (324)
T ss_pred cCchhhhcCCCCCCCcchhHHhhhCCCHHHH-HHHHH
Confidence 99999998888877 6677788888888888 65543
No 8
>KOG0524|consensus
Probab=100.00 E-value=1.1e-59 Score=482.27 Aligned_cols=298 Identities=15% Similarity=0.108 Sum_probs=268.7
Q ss_pred hhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeec
Q psy4209 236 LLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWE 315 (856)
Q Consensus 236 ll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE 315 (856)
.|..+.+|+++||||+. +||.|++++||.+|||+.||+||||+|+|+.|+++|+|+.|+|||+ |
T Consensus 48 Em~rD~~VfvmGEeV~q--------------y~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~--e 111 (359)
T KOG0524|consen 48 EMDRDPRVFVMGEEVGQ--------------YGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPIC--E 111 (359)
T ss_pred HhccCCcEEEechhhhh--------------cCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhh--h
Confidence 45678899999999998 9999999999999999999999999999999999999999999999 9
Q ss_pred ccchhhHHhHHHHHHHHHHhhhhhcCCc--cCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCC
Q psy4209 316 AQFGDFANNAQAVFDQWISSARSKWNID--SGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDAN 392 (856)
Q Consensus 316 ~qfgDF~~~A~~~id~~~a~~~~kw~~~--~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~g 392 (856)
+|..+|+..|.|||.|-.++..||.|++ +|+|+|-|.|. .|.|+|||| |.+ +||.++||
T Consensus 112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ---------~f~---------~wy~siPG 173 (359)
T KOG0524|consen 112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQ---------DFA---------SWYGSIPG 173 (359)
T ss_pred hhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhh---------hhH---------HHhccCCC
Confidence 9999999999999999999999999984 89999999999 799999999 233 88999999
Q ss_pred eEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCc
Q psy4209 393 WFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGK 472 (856)
Q Consensus 393 l~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~ 472 (856)
|||+.|.||.|++|||+++|+ ++|||||||+..||..+...+. |. -..+|..|||+|.+.+.+.+| |||++|.+
T Consensus 174 lkvvapysaedakGLlKaAIR--d~NPVV~lEnelLYg~~f~i~~--E~-ls~~fv~p~gkAkier~G~~i-Tivt~Sr~ 247 (359)
T KOG0524|consen 174 LKVVAPYSAEDAKGLLKAAIR--DENPVVFLENELLYGLSFEIPE--EA-LSKDFVLPLGKAKIEREGTHI-TIVTYSRM 247 (359)
T ss_pred ceEeccCChhhhhhHHHHhcc--CCCCeEEEechhhcCCCccCCh--hh-cCcceeeeccceeeeecCCce-EEEEechh
Confidence 999999999999999999995 4999999999999998874442 22 346799999999998888888 99999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhh-hCCCCeE
Q psy4209 473 IYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVME-ITTDPVC 551 (856)
Q Consensus 473 v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~-~~~~~~~ 551 (856)
|+++|+||+.+...|+++|||+||+|.|||.++|.+||+||++ ++.|+|.+...|++++|.++|.|.++ .|++|+.
T Consensus 248 v~~~leAA~~L~~~Gvs~EVInlrSirP~D~~tI~~Sv~KT~~---lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~ 324 (359)
T KOG0524|consen 248 VGHCLEAAETLVAKGVSAEVINLRSIRPFDIETIGASVKKTNR---LVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQ 324 (359)
T ss_pred HHHHHHHHHHHHhcCCCceeEeeeccCcccHHHHHHHHhhhce---EEEEeccccccchhHHHHHHHHHHHHhhhcchhh
Confidence 9999999998766679999999999999999999999999999 99999999999999999999999874 4889998
Q ss_pred EecCCCCCCCCCC-chhhHHHHHHHc
Q psy4209 552 YIGRDPSSVPASG-LQAKHYLLAALN 576 (856)
Q Consensus 552 ~vgr~~~~~pa~g-~~~~h~~e~~~i 576 (856)
++.-.+.|.|+++ ++....++...|
T Consensus 325 rvtg~DvP~PYa~~lE~~a~p~~~~i 350 (359)
T KOG0524|consen 325 RVTGADVPTPYAKTLEDWAVPQPADI 350 (359)
T ss_pred hhcCCCCCCccchhhHhhcCCCHHHH
Confidence 8877777777544 444455555555
No 9
>KOG0525|consensus
Probab=100.00 E-value=1.9e-57 Score=459.20 Aligned_cols=292 Identities=18% Similarity=0.210 Sum_probs=258.4
Q ss_pred hccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecc
Q psy4209 237 LDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEA 316 (856)
Q Consensus 237 l~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~ 316 (856)
|..++.-.++||||+- ||+|++|.||.++||+.||+||||+|+||+||++|.|..|.+.|+ ||
T Consensus 55 l~tdp~a~vfgedv~f---------------ggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aia--ei 117 (362)
T KOG0525|consen 55 LETDPRAVVFGEDVAF---------------GGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIA--EI 117 (362)
T ss_pred hhcCCceEEecccccc---------------ceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEE--EE
Confidence 3456677799999985 899999999999999999999999999999999999999999999 99
Q ss_pred cchhhHHhHHHHHHHHHHhhhhhcCCc---cCeEEEcCccCCCCC-ccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCC
Q psy4209 317 QFGDFANNAQAVFDQWISSARSKWNID---SGLVLLLPHGIEGQG-PEHSSARPERFLELCSDSPRCVELDMKKQLFDAN 392 (856)
Q Consensus 317 qfgDF~~~A~~~id~~~a~~~~kw~~~---~~lv~~lP~G~~g~G-p~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~g 392 (856)
||+||+..|+|||.|.+++.+|+.|.| .+|++|.|.|..|.| -+|||+ +| +.|.|+||
T Consensus 118 qfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqs-pe-----------------aff~h~pg 179 (362)
T KOG0525|consen 118 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQS-PE-----------------AFFCHVPG 179 (362)
T ss_pred eeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCC-ch-----------------hheecCCC
Confidence 999999999999999999999999974 579999999997766 689994 45 55689999
Q ss_pred eEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCc
Q psy4209 393 WFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGK 472 (856)
Q Consensus 393 l~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~ 472 (856)
+|||+|.+|-+++|||.++|+ ++|||||||||.|||... +|+ |.++|.+|+++|.+.++++|+ |+|.||.+
T Consensus 180 ikvviprsp~qakglllscir--dpnp~iffepk~lyr~a~-----edv-p~~dy~iplsqaevireg~di-tlv~wgtq 250 (362)
T KOG0525|consen 180 IKVVIPRSPRQAKGLLLSCIR--DPNPCIFFEPKILYRQAV-----EDV-PEGDYMIPLSQAEVIREGSDI-TLVAWGTQ 250 (362)
T ss_pred ceEEecCCcchhhceeeeecc--CCCceEEechHHHHHHhh-----hhC-CCCCccccccHHHHhhcCCce-EEEEcchh
Confidence 999999999999999999995 599999999999999853 688 999999999999987889999 99999999
Q ss_pred HHHHHHHHHH-HcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhh-CCCCe
Q psy4209 473 IYYDLIEARD-AANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEI-TTDPV 550 (856)
Q Consensus 473 v~~~l~~a~~-~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~-~~~~~ 550 (856)
||..+++|-- ++++|+++|||||++|-|||.|+|.+||+||+| +++.||.|.++|+++||++.++|.|+. +.+|+
T Consensus 251 vh~i~e~a~l~~ek~giscevidlkti~pwd~d~v~~sv~ktgr---llisheapvtggfgaeiastv~ercfl~leapi 327 (362)
T KOG0525|consen 251 VHVIMEQACLAKEKLGISCEVIDLKTIIPWDKDTVEESVQKTGR---LLISHEAPVTGGFGAEIASTVQERCFLNLEAPI 327 (362)
T ss_pred hHHHHHHHHhhHHhcCCceEEEeeecccCccHHHHHHHHHhhce---EEEeccCCccCcchHHHHHHHHHHHHhhccCch
Confidence 9999998753 344569999999999999999999999999999 999999999999999999999999854 67788
Q ss_pred EEecCCCCCCCCCCchhhHHHHHHHc
Q psy4209 551 CYIGRDPSSVPASGLQAKHYLLAALN 576 (856)
Q Consensus 551 ~~vgr~~~~~pa~g~~~~h~~e~~~i 576 (856)
.+|.--+.|-|- -.+.-+.+...++
T Consensus 328 srvcg~dtpfp~-vfepfy~ptk~ki 352 (362)
T KOG0525|consen 328 SRVCGLDTPFPH-VFEPFYMPTKNKI 352 (362)
T ss_pred hhhccCCCCCcc-cccccccCcHhHH
Confidence 887666666662 2233344444444
No 10
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=6.5e-45 Score=415.51 Aligned_cols=299 Identities=15% Similarity=0.113 Sum_probs=262.7
Q ss_pred hhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCccee
Q psy4209 234 GTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVI 313 (856)
Q Consensus 234 ~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~ 313 (856)
..++.++.+|+++|+|++. ++|.|+++++|.++||+.|++|+||+|.+++|++.|+|+.|.||++
T Consensus 153 ~~~~~~d~~vv~i~~Dv~~--------------~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv- 217 (464)
T PRK11892 153 AEEMRRDEDVFVMGEEVAE--------------YQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIV- 217 (464)
T ss_pred HHHHhhCcCEEEEeCCccc--------------cCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEE-
Confidence 4567789999999999987 8999999999999999999999999999999999999999999999
Q ss_pred ecccchhhHHhHHHHHHHHHHhhhhhcCC--ccCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCC
Q psy4209 314 WEAQFGDFANNAQAVFDQWISSARSKWNI--DSGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFD 390 (856)
Q Consensus 314 wE~qfgDF~~~A~~~id~~~a~~~~kw~~--~~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~ 390 (856)
|+|+.+|+..|++||.|.+++..+|+|+ .+|+|++.|+|. .+.|++||+. +.+++.++
T Consensus 218 -~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~------------------d~a~~~~i 278 (464)
T PRK11892 218 -EFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQD------------------YAAWYSHI 278 (464)
T ss_pred -EEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccC------------------HHHHHhhC
Confidence 9999999999999999999999999997 489999999977 6789988883 23888999
Q ss_pred CCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccC-CCccccCCCcccccCCCCceEEEEc
Q psy4209 391 ANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLD-TKFRAYLPDTMADRNKDKVEKYILC 469 (856)
Q Consensus 391 ~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~-~~f~~~i~~a~~~~~~~~v~tvv~~ 469 (856)
|||+|++|+||+|+++||+.++. +++|++|+|||.+|..+. ++ |. +.|..++|++.+.+++.|+ |||+|
T Consensus 279 Pgl~V~~P~d~~d~~~ll~~ai~--~~~Pv~ile~~~ry~~~~------~v-p~~~~~~~~~Gka~v~r~G~Dv-tIva~ 348 (464)
T PRK11892 279 PGLKVVAPYSAADAKGLLKAAIR--DPNPVIFLENEILYGQSF------DV-PKLDDFVLPIGKARIHREGKDV-TIVSF 348 (464)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhh--CCCcEEEEechhhcCCCC------CC-CCcCCccccCceEEEEEcCCCE-EEEEc
Confidence 99999999999999999999994 489999999999998653 22 22 3577899999987888888 99999
Q ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhh-hCCC
Q psy4209 470 SGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVME-ITTD 548 (856)
Q Consensus 470 ~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~-~~~~ 548 (856)
|.+++++|++++.+...|++++|||+++|.|||.++|.++++||++ +|+|+|.+.++|+|++|+..+.+..+ .++.
T Consensus 349 G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~---vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~ 425 (464)
T PRK11892 349 SIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNR---LVTVEEGWPQSGVGAEIAARVMEQAFDYLDA 425 (464)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCe---EEEEeCCCcCCcHHHHHHHHHHHhCccccCC
Confidence 9999999999998765569999999999999999999999999999 99999999999999999999999763 3567
Q ss_pred CeEEecCCCCCCCCCCchhhHHH-HHHHchHHh
Q psy4209 549 PVCYIGRDPSSVPASGLQAKHYL-LAALNMEKK 580 (856)
Q Consensus 549 ~~~~vgr~~~~~pa~g~~~~h~~-e~~~i~~~~ 580 (856)
|+.++|-++.+.|...+...+.. ..+.| ++.
T Consensus 426 pv~ri~~~d~~~~~~~~le~~~l~~~~~I-v~a 457 (464)
T PRK11892 426 PVLRVTGKDVPMPYAANLEKLALPSVAEV-VEA 457 (464)
T ss_pred CeEEeccCCccCCcHHHHHHhcCCCHHHH-HHH
Confidence 99999999988774433333332 44455 443
No 11
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=3.1e-44 Score=395.47 Aligned_cols=301 Identities=14% Similarity=0.114 Sum_probs=264.5
Q ss_pred hhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCccee
Q psy4209 234 GTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVI 313 (856)
Q Consensus 234 ~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~ 313 (856)
..++.++.+|+++|+|++. .+|+|+.|++|.++|+..|++|+||+|++++|++.|+|+.|.+|++
T Consensus 15 ~~~~~~dp~iv~l~~d~~~--------------~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv- 79 (327)
T CHL00144 15 DEEMARDPRVFVIGEDVGH--------------YGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIV- 79 (327)
T ss_pred HHHHhhCCCEEEEeCcccc--------------cCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEE-
Confidence 4567789999999999987 6899999999999997679999999999999999999999999999
Q ss_pred ecccchhhHHhHHHHHHHHHHhhhhhcCCc--cCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCC
Q psy4209 314 WEAQFGDFANNAQAVFDQWISSARSKWNID--SGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFD 390 (856)
Q Consensus 314 wE~qfgDF~~~A~~~id~~~a~~~~kw~~~--~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~ 390 (856)
+.|+.+|..-|++||.|.++...+++|++ .|+|++.|.|. .+.|++||++ +| +++.++
T Consensus 80 -~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~-~e-----------------a~~~~i 140 (327)
T CHL00144 80 -EGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQR-LE-----------------SYFQSV 140 (327)
T ss_pred -EeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCcccccc-HH-----------------HHHhcC
Confidence 99999999999999999999999999985 78999988654 4689999994 35 566899
Q ss_pred CCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcC
Q psy4209 391 ANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCS 470 (856)
Q Consensus 391 ~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~ 470 (856)
|||+|++||+|.|++++|++++. .++|++|+|||.||+.+. ++ +++.|..++|++.+.++++|+ |||+||
T Consensus 141 Pgl~V~~Psd~~d~~~~l~~a~~--~~~Pv~ire~~~l~~~~~------~v-~~~~~~~~~Gk~~v~~~G~di-tiia~G 210 (327)
T CHL00144 141 PGLQIVACSTPYNAKGLLKSAIR--SNNPVIFFEHVLLYNLKE------EI-PDNEYLLPLEKAEVVRPGNDI-TILTYS 210 (327)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEcHHhcCCCC------CC-CCCCccccCCeeEEEEcCCCE-EEEEcc
Confidence 99999999999999999999995 489999999999998653 34 555677899999887888888 999999
Q ss_pred CcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhh-CCCC
Q psy4209 471 GKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEI-TTDP 549 (856)
Q Consensus 471 g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~-~~~~ 549 (856)
.+|+.+|+|++.+...|++++|||+++|+|||.++|.++++||++ +|+|+|....+|+|++|+..+.+..+. ++.|
T Consensus 211 ~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~---vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~p 287 (327)
T CHL00144 211 RMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHK---VLIVEECMKTGGIGAELIAQINEHLFDELDAP 287 (327)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCc---EEEEECCCCCCCHHHHHHHHHHHhchhhcCCC
Confidence 999999999998765569999999999999999999999999999 999999999999999999999998532 4568
Q ss_pred eEEecCCCCCCCCC-CchhhHHHHHHHchHHhhh
Q psy4209 550 VCYIGRDPSSVPAS-GLQAKHYLLAALNMEKKAF 582 (856)
Q Consensus 550 ~~~vgr~~~~~pa~-g~~~~h~~e~~~i~~~~a~ 582 (856)
++++|-++.+.|.. -+...+....++| ++.+.
T Consensus 288 v~rl~~~d~~~~~~~~~~~~~gl~~~~I-~~~i~ 320 (327)
T CHL00144 288 IVRLSSQDVPTPYNGPLEEATVIQPAQI-IEAVE 320 (327)
T ss_pred eEEEccCCCcCCCCccHHHHhCCCHHHH-HHHHH
Confidence 99999999888844 4555555555666 55444
No 12
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=2.7e-42 Score=383.64 Aligned_cols=310 Identities=16% Similarity=0.112 Sum_probs=269.0
Q ss_pred HHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCc
Q psy4209 231 LALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNF 310 (856)
Q Consensus 231 la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~ 310 (856)
-+...++.++.+|+++|+|++. ++|+|..+++|.++||+.|++|++|+|++++|++.|+|+.|.+|
T Consensus 35 ~aL~e~~~~d~~iv~i~~D~~~--------------~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P 100 (356)
T PLN02683 35 SALDEEMSADPKVFIMGEEVGE--------------YQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKP 100 (356)
T ss_pred HHHHHHHhhCcCEEEEcccccc--------------ccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEE
Confidence 3445667788899999999987 89999999999999999999999999999999999999999999
Q ss_pred ceeecccchhhHHhHHHHHHHHHHhhhhhcCCc--cCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhhh
Q psy4209 311 LVIWEAQFGDFANNAQAVFDQWISSARSKWNID--SGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKKQ 387 (856)
Q Consensus 311 l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~--~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~ 387 (856)
++ ++||.+|+..|++||.+.++...+|+|++ .|++++.|+|. .|.|++||+. .+ +++
T Consensus 101 ~v--~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~-~~-----------------a~l 160 (356)
T PLN02683 101 VV--EFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC-FA-----------------AWY 160 (356)
T ss_pred EE--EEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC-HH-----------------HHH
Confidence 99 99999999999999999999999999986 89999999987 6789999884 12 677
Q ss_pred cCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEE
Q psy4209 388 LFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYI 467 (856)
Q Consensus 388 ~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv 467 (856)
.++|||+|+.|++|.|++++|+.++. .++|++|++||.+++.+.... ++. ....+..++|++.+.++++|+ +||
T Consensus 161 r~iPnl~V~~Pad~~e~~~~l~~a~~--~~gPv~ir~~~~~~~~~~~~~--~~~-~~~~~~~~~Gk~~v~r~G~dv-tIi 234 (356)
T PLN02683 161 SSVPGLKVLAPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVS--AEV-LDSSFVLPIGKAKIEREGKDV-TIV 234 (356)
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEehhhccCCCCCC--CCC-CCccccccCCeeEEEEcCCCE-EEE
Confidence 89999999999999999999999994 489999999999998653211 121 222466789999877888888 999
Q ss_pred EcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhh-C
Q psy4209 468 LCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEI-T 546 (856)
Q Consensus 468 ~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~-~ 546 (856)
+||.+|+.++++++.+...|++++|||+++|+|||.++|.++++||++ +|+|+|...++|+|++|+..+.+..+. +
T Consensus 235 a~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~---vvtvEE~~~~GGlGs~Va~~l~e~~f~~~ 311 (356)
T PLN02683 235 AFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNR---LVTVEEGWPQHGVGAEICASVVEESFDYL 311 (356)
T ss_pred EccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCe---EEEEeCCCcCCCHHHHHHHHHHHhchhcc
Confidence 999999999999987655569999999999999999999999999998 999999999999999999999998532 3
Q ss_pred CCCeEEecCCCCCCCCCC-chhhHHHHHHHchHHhhhcc
Q psy4209 547 TDPVCYIGRDPSSVPASG-LQAKHYLLAALNMEKKAFKV 584 (856)
Q Consensus 547 ~~~~~~vgr~~~~~pa~g-~~~~h~~e~~~i~~~~a~~~ 584 (856)
..|++++|.++.+.|+.. +.....+..++| ++.+.++
T Consensus 312 ~~~v~rlg~~d~~~p~~~~le~~~~p~~~~i-~~a~~~~ 349 (356)
T PLN02683 312 DAPVERIAGADVPMPYAANLERLALPQVEDI-VRAAKRA 349 (356)
T ss_pred CCCeEEeccCCcCCCccHHHHHhhCCCHHHH-HHHHHHH
Confidence 568999999988887554 566666677888 7766653
No 13
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=5e-42 Score=381.43 Aligned_cols=303 Identities=17% Similarity=0.177 Sum_probs=263.6
Q ss_pred HhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcce
Q psy4209 233 LGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLV 312 (856)
Q Consensus 233 ~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~ 312 (856)
+-.++.++.+|.++|+|++. +||+|+.+++|.++|||.|++|++|+|++++|++.|+|+.|.+|++
T Consensus 45 L~~~~~~d~~iv~l~~D~~~--------------~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv 110 (355)
T PTZ00182 45 LDEELARDPKVFVLGEDVAQ--------------YGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIA 110 (355)
T ss_pred HHHHHhhCCCEEEEeCCccc--------------cCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEE
Confidence 34567789999999999976 7899999999999999999999999999999999999999999999
Q ss_pred eecccchhhHHhHHHHHHHHHHhhhhhcCC--ccCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcC
Q psy4209 313 IWEAQFGDFANNAQAVFDQWISSARSKWNI--DSGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLF 389 (856)
Q Consensus 313 ~wE~qfgDF~~~A~~~id~~~a~~~~kw~~--~~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~ 389 (856)
++||+||...|++||.+.++...++.|+ .+|+|++.|+|. .+.|++||++ +| +++.+
T Consensus 111 --~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~-~e-----------------a~lr~ 170 (355)
T PTZ00182 111 --EFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS-FE-----------------AYFAH 170 (355)
T ss_pred --EechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch-HH-----------------HHHhc
Confidence 9999999999999999999888777665 589999999877 5569999994 45 44579
Q ss_pred CCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEc
Q psy4209 390 DANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILC 469 (856)
Q Consensus 390 ~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~ 469 (856)
+|||+|++|++|.|++++|+.++. .++|++|++||.|+|.+.. .+ +.+.|..++|++.+.+++.++ +||+|
T Consensus 171 iPn~~V~~Psd~~e~~~~l~~a~~--~~~P~~i~~p~~l~r~~~~-----~~-~~~~~~~~~Gk~~vl~~G~di-~Iia~ 241 (355)
T PTZ00182 171 VPGLKVVAPSDPEDAKGLLKAAIR--DPNPVVFFEPKLLYRESVE-----VV-PEADYTLPLGKAKVVREGKDV-TIVGY 241 (355)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHh--CCCcEEEEeehHHhCCCCC-----CC-CcccccccCCcceEecCCCCE-EEEEe
Confidence 999999999999999999999995 4899999999999987542 22 344577789999876778888 99999
Q ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhh-hhCCC
Q psy4209 470 SGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVM-EITTD 548 (856)
Q Consensus 470 ~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~-~~~~~ 548 (856)
|.+++.++++++.+...|+++.||++++|+|||.++|.++++|+++ +|+|+|....+|++++|+..+.+.. ..+..
T Consensus 242 Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~---IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~ 318 (355)
T PTZ00182 242 GSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGR---CVIVHEAPPTCGIGAEIAAQIMEDCFLYLEA 318 (355)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCE---EEEEEeCCCCCCHHHHHHHHHHHhhhhhcCC
Confidence 9999999999987654569999999999999999999999999998 9999999999999999999999986 33566
Q ss_pred CeEEecCCCCCCCCCC-chhhHHHHHHHchHHhhh
Q psy4209 549 PVCYIGRDPSSVPASG-LQAKHYLLAALNMEKKAF 582 (856)
Q Consensus 549 ~~~~vgr~~~~~pa~g-~~~~h~~e~~~i~~~~a~ 582 (856)
|++++|-++.+.|..+ +.....+..++| ++.+.
T Consensus 319 pv~ri~~~d~~~p~~~~le~~~~~~~~~i-~~~~~ 352 (355)
T PTZ00182 319 PIKRVCGADTPFPYAKNLEPAYLPDKEKV-VEAAK 352 (355)
T ss_pred CeEEeCCCCccCCCChHHHHHhCCCHHHH-HHHHH
Confidence 8999999999888776 466666666677 65543
No 14
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=2.5e-41 Score=372.78 Aligned_cols=286 Identities=13% Similarity=0.100 Sum_probs=251.1
Q ss_pred HHHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCC
Q psy4209 230 ALALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPN 309 (856)
Q Consensus 230 ~la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~ 309 (856)
.-+.-.++.++.+|.++|+|++. .+|.|++|++|.++||+.|++|+||+|++++|++.|+|+.|.+
T Consensus 11 ~~~L~~~~~~d~~iv~l~~d~~~--------------~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~ 76 (327)
T PRK09212 11 RDAMQEEMERDPKVFLMGEEVGE--------------YQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLR 76 (327)
T ss_pred HHHHHHHHHhCCCEEEEcCcccc--------------cCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCe
Confidence 34455778899999999999987 7999999999999999999999999999999999999999999
Q ss_pred cceeecccchhhHHhHHHHHHHHHHhhhhhcCC--ccCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhh
Q psy4209 310 FLVIWEAQFGDFANNAQAVFDQWISSARSKWNI--DSGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKK 386 (856)
Q Consensus 310 ~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~--~~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~ 386 (856)
|++ ++|+.+|..-|++||.+.++..++++|+ .+|+|++.|.|. .+.|++||++ +| ++
T Consensus 77 Piv--~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~-~e-----------------a~ 136 (327)
T PRK09212 77 PIV--EFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC-YA-----------------AW 136 (327)
T ss_pred eEE--EeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC-HH-----------------HH
Confidence 999 9999999999999999999999888886 489999999877 6789999995 34 56
Q ss_pred hcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEE
Q psy4209 387 QLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKY 466 (856)
Q Consensus 387 ~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tv 466 (856)
+.++|||+|++|++|.|++++|+.++. .++|++|++|+.+|..+. ++ +++.+..++|++.+.+++.|+ +|
T Consensus 137 ~r~iP~l~V~~P~d~~e~~~~l~~a~~--~~~Pv~i~~~~~~~~~~~------~~-~~~~~~~~~Gk~~vl~~G~di-~i 206 (327)
T PRK09212 137 YSHIPGLKVVAPYFAADCKGLLKTAIR--DPNPVIFLENEILYGHSH------EV-PEEEESIPIGKAAILREGSDV-TI 206 (327)
T ss_pred HhcCCCCEEEeeCCHHHHHHHHHHHHh--CCCcEEEEEchhhcCCCC------CC-CCCCccccCCeeEEEEeCCCE-EE
Confidence 689999999999999999999999995 489999999999987432 34 444566789999887888888 99
Q ss_pred EEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhh-h
Q psy4209 467 ILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVME-I 545 (856)
Q Consensus 467 v~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~-~ 545 (856)
|+||.+++.++++++.++..|++++||++++|+|||.++|.++++|+++ +|+|+|....+|+++.++..+.+... .
T Consensus 207 va~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~---vv~vEe~~~~gGlg~~la~~l~~~~~~~ 283 (327)
T PRK09212 207 VTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNR---LVVVEEGWPFAGVGAEIAALIMKEAFDY 283 (327)
T ss_pred EEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCe---EEEEcCCCCCCCHHHHHHHHHHHhCccc
Confidence 9999999999999987655569999999999999999999999999998 99999999999999999999998753 2
Q ss_pred CCCCeEEecCCCCCCCC
Q psy4209 546 TTDPVCYIGRDPSSVPA 562 (856)
Q Consensus 546 ~~~~~~~vgr~~~~~pa 562 (856)
+..++.++|-++.+.|.
T Consensus 284 ~~~~i~r~~~~~~~~~~ 300 (327)
T PRK09212 284 LDAPVERVTGKDVPLPY 300 (327)
T ss_pred cCCCeEEEcCCCccCCc
Confidence 34467666666666663
No 15
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=1.1e-38 Score=377.86 Aligned_cols=267 Identities=15% Similarity=0.127 Sum_probs=226.4
Q ss_pred hhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeec
Q psy4209 236 LLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWE 315 (856)
Q Consensus 236 ll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE 315 (856)
++.++.+|++.+.|...+ +| +++|.++| |.|++|+||+|++++|++.|+|+.|.+|++ +
T Consensus 323 ~~~~d~~iv~i~ad~~~~--------------~~----~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv--~ 381 (617)
T TIGR00204 323 LAKKDNKIVGITPAMPEG--------------SG----LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFV--A 381 (617)
T ss_pred HHhhCcCEEEEECCccCC--------------cC----hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEE--E
Confidence 344567788888887441 22 79999999 899999999999999999999999999999 9
Q ss_pred ccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCC-CCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCe
Q psy4209 316 AQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEG-QGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANW 393 (856)
Q Consensus 316 ~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g-~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl 393 (856)
+ |++|+..|++||.+.++.. +.|++++.+| |+.| .||+|++. | +.+++.++|||
T Consensus 382 ~-~a~Fl~ra~dQi~~~~a~~------~lpV~i~~~~~G~~g~dG~tH~~~--~---------------dia~lr~iPgl 437 (617)
T TIGR00204 382 I-YSTFLQRAYDQVVHDVCIQ------KLPVLFAIDRAGIVGADGETHQGA--F---------------DISYLRCIPNM 437 (617)
T ss_pred e-cHHHHHHHHHHHHHHHHhc------CCCEEEEEECCCcCCCCCcccccc--h---------------HHHHHhcCCCc
Confidence 8 9999999999999888752 5899999997 5544 49999993 2 13778999999
Q ss_pred EEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcH
Q psy4209 394 FVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKI 473 (856)
Q Consensus 394 ~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v 473 (856)
+|+.|++|.|++++|+.++.. .++|++|..||..+.... . +...+..++|++.+.+++.|+ |||+||.+|
T Consensus 438 ~V~~Psd~~e~~~~l~~a~~~-~~~Pv~ir~~r~~~~~~~-------~-~~~~~~~~~Gk~~vlr~G~dv-tIva~G~~v 507 (617)
T TIGR00204 438 VIMAPSDENELRQMLYTGYHY-DDGPIAVRYPRGNAVGVE-------L-TPEPEKLPIGKSEVLRKGEKI-LILGFGTLV 507 (617)
T ss_pred EEEeeCCHHHHHHHHHHHHhC-CCCCEEEEEccCCcCCcc-------c-CCccccccCCceEEEEcCCCE-EEEEcCHHH
Confidence 999999999999999999953 349999999998763211 1 122356788999877778888 999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEe
Q psy4209 474 YYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYI 553 (856)
Q Consensus 474 ~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~v 553 (856)
+.++++|+++...|++++|||+++|+|||.++|.++++||++ +|+|+|....+|+|++|++.+.+.. +..+++++
T Consensus 508 ~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~---vvtvEE~~~~GGlGs~v~~~l~~~~--~~~~v~~i 582 (617)
T TIGR00204 508 PEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEK---LVTVEENAIMGGAGSAVLEFLMDQN--KLVPVKRL 582 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCe---EEEEECCCCccChHHHHHHHHHhcC--CCCCeEEE
Confidence 999999987655569999999999999999999999999998 9999999999999999999999874 24589999
Q ss_pred cCCCCCCCC
Q psy4209 554 GRDPSSVPA 562 (856)
Q Consensus 554 gr~~~~~pa 562 (856)
|-|+.+.|.
T Consensus 583 g~~d~~~~~ 591 (617)
T TIGR00204 583 GIPDFFIPH 591 (617)
T ss_pred eCCCcCcCC
Confidence 999877763
No 16
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.6e-37 Score=365.87 Aligned_cols=379 Identities=13% Similarity=0.108 Sum_probs=280.3
Q ss_pred CcEEEEEEcCCceeccCCCC---------ccccchhhhhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCcEEEE
Q psy4209 10 HGTIHIIINNQVGFTANPWE---------TRSSMYCTCVAKVIGAPVFHV-NADEPEVVVSIMKLLARYRQTFKRDAFID 79 (856)
Q Consensus 10 gGvIfvveNNqyg~sT~~~~---------~~s~~~~sdrAk~~gip~~~V-DG~D~~aV~~a~~~Av~~~R~g~gPvlIe 79 (856)
.-+||||+||+|+++++... ......+.+++++||++++.| ||+|++++++|+++| |+++||++|+
T Consensus 164 ~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a----~~~~gP~~i~ 239 (581)
T PRK12315 164 SNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEV----KDIDHPIVLH 239 (581)
T ss_pred CCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHH----HhCCCCEEEE
Confidence 57999999999999987642 222334567899999999999 999999999999986 4578999999
Q ss_pred EeeecCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy4209 80 IIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPW 159 (856)
Q Consensus 80 ~~tYR~~GHse~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~ 159 (856)
+.|||-+|.... .+.-+.|...+|. +.+. ..+.+
T Consensus 240 ~~T~kG~G~~~~-------~~~~~~~h~~~~f--------------~~~~--------------------~~~~~----- 273 (581)
T PRK12315 240 IHTLKGKGYQPA-------EENKEAFHWHMPF--------------DLET--------------------GQSKV----- 273 (581)
T ss_pred EEeecCCCCChh-------hcCHHhcCCCCCC--------------Cccc--------------------CcccC-----
Confidence 999999984311 0111122111110 0000 00000
Q ss_pred CcCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHHHHHhhhhcc
Q psy4209 160 IDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDS 239 (856)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~la~~sll~e 239 (856)
..| ... .... +++ ++..++.+
T Consensus 274 --~~~---------------~~~--------------------~~~~--------------------~~~--~l~~~~~~ 294 (581)
T PRK12315 274 --PAS---------------GES--------------------YSSV--------------------TLD--YLLKKIKE 294 (581)
T ss_pred --CCC---------------CcC--------------------HHHH--------------------HHH--HHHHHhcc
Confidence 000 000 0000 011 12234567
Q ss_pred CCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccch
Q psy4209 240 GHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFG 319 (856)
Q Consensus 240 g~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfg 319 (856)
+.+|.++++|... .++ +++|.++| +.|++|++|+|.+++|++.|+|+.|.+|++ ++|.
T Consensus 295 d~~i~~i~~~~~~-----------------~~~-~~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv---~~fs 352 (581)
T PRK12315 295 GKPVVAINAAIPG-----------------VFG-LKEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVI---FVNS 352 (581)
T ss_pred CCCEEEEeCcccc-----------------ccC-cHHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEE---EeeH
Confidence 8889999998643 333 48899999 689999999999999999999999999997 8999
Q ss_pred hhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEec
Q psy4209 320 DFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYP 398 (856)
Q Consensus 320 DF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~p 398 (856)
+|+..|++||.+.++. .+.|++++.+||. .|.||+|++. | +.+++.++|||+|+.|
T Consensus 353 ~Fl~ra~dQi~~d~a~------~~lpv~~~~~~~g~~~dG~TH~~~--~---------------Dia~lr~iPnl~V~~P 409 (581)
T PRK12315 353 TFLQRAYDQLSHDLAI------NNNPAVMIVFGGSISGNDVTHLGI--F---------------DIPMISNIPNLVYLAP 409 (581)
T ss_pred HHHHHHHHHHHHHHHh------cCCCEEEEEECCcccCCCcccccc--H---------------HHHHHhcCCCCEEEec
Confidence 9999999999887664 2589999999866 5689999993 2 2378899999999999
Q ss_pred CCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcHHHHHH
Q psy4209 399 STPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLI 478 (856)
Q Consensus 399 stpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v~~~l~ 478 (856)
++|.++.++|+.++.. .+.|++|..||..+.... + +...|.. +++.+.+++.|+ |||+||.+|+.+++
T Consensus 410 ~d~~e~~~~l~~a~~~-~~gP~~ir~~r~~~~~~~------~--~~~~~~~--~k~~v~~~g~dv-tiia~G~~v~~Al~ 477 (581)
T PRK12315 410 TTKEELIAMLEWALTQ-HEHPVAIRVPEHGVESGP------T--VDTDYST--LKYEVTKAGEKV-AILALGDFYELGEK 477 (581)
T ss_pred CCHHHHHHHHHHHHhC-CCCcEEEEEcCCccCCCC------C--CccCccc--ceEEEEecCCCE-EEEEEchHHHHHHH
Confidence 9999999999999952 368999999999876532 1 1123432 366665778888 99999999999999
Q ss_pred HHHHHcCC-CCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCC
Q psy4209 479 EARDAANL-TEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDP 557 (856)
Q Consensus 479 ~a~~~~~~-~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~ 557 (856)
+|+.+... |++++||++++|.|||.+++.. +.|+.+. +|+++|....+|+|++|+..+.+. ..++.++|-|+
T Consensus 478 Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~-~~~~~~~--vvtvEe~~~~GG~gs~v~~~l~~~----~~~~~~~gi~d 550 (581)
T PRK12315 478 VAKKLKEELGIDATLINPKFITGLDEELLEK-LKEDHEL--VVTLEDGILDGGFGEKIARYYGNS----DMKVLNYGAKK 550 (581)
T ss_pred HHHHHhhhcCCCEEEEecCcCCCCCHHHHHH-HHhhCCE--EEEEcCCCcCCCHHHHHHHHHHcC----CCeEEEecCCC
Confidence 99987554 6999999999999999998755 5555551 566777788899999999988765 23688899877
Q ss_pred CCCC
Q psy4209 558 SSVP 561 (856)
Q Consensus 558 ~~~p 561 (856)
.-.+
T Consensus 551 ~f~~ 554 (581)
T PRK12315 551 EFND 554 (581)
T ss_pred CCCC
Confidence 5443
No 17
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=5.2e-36 Score=354.10 Aligned_cols=399 Identities=14% Similarity=0.133 Sum_probs=295.1
Q ss_pred CccCcEEEEEEcCCceeccCCCCc---cccchhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 7 YNTHGTIHIIINNQVGFTANPWET---RSSMYCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~~~---~s~~~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
|. .-+|+||.||+|+++++.... .......+++++||.+++ .|||+|+++++.|.++| ++.++|++|++.|
T Consensus 167 ~~-~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a----~~~~~P~lI~~~T 241 (580)
T PRK05444 167 LK-SDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNA----KDLKGPVLLHVVT 241 (580)
T ss_pred hC-CCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHH----HhCCCCEEEEEEe
Confidence 45 678999999999999887544 223456688999999999 59999999999887754 4557999999999
Q ss_pred ecCCCCCCC--CCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4209 83 YRRHGHNEG--DDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWI 160 (856)
Q Consensus 83 YR~~GHse~--D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~ 160 (856)
+|-+|.+.. |... |.. .++ .+++ . .....+
T Consensus 242 ~kg~G~~~~e~~~~~---------~h~-~~~-------------~~~~-~------------------~~~~~~------ 273 (580)
T PRK05444 242 KKGKGYAPAEADPIK---------YHG-VGK-------------FDPE-T------------------GEQPKS------ 273 (580)
T ss_pred cCCcCCChhhcCccc---------cCC-CCC-------------CCcc-c------------------CCcccc------
Confidence 998885422 1111 111 110 1111 0 000000
Q ss_pred cCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHHHHHhhhhccC
Q psy4209 161 DVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSG 240 (856)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~la~~sll~eg 240 (856)
.+ ... ..+.++ +.. ++..++.++
T Consensus 274 --------~~---------~~~----~~~~~~----------~~~--------------------------~L~~~~~~~ 296 (580)
T PRK05444 274 --------SK---------PGK----PSYTKV----------FGE--------------------------TLCELAEKD 296 (580)
T ss_pred --------CC---------CCc----ccHHHH----------HHH--------------------------HHHHHHhhC
Confidence 00 000 001111 111 122344567
Q ss_pred CeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccchh
Q psy4209 241 HHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGD 320 (856)
Q Consensus 241 ~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgD 320 (856)
.+|.+.+.|... ++ + +..|.++| +.|++|++|+|.+++|++.|+|+.|.+|++ +. |.+
T Consensus 297 ~~vv~~~adl~~---------------~~--~-~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~--~~-f~~ 354 (580)
T PRK05444 297 PKIVAITAAMPE---------------GT--G-LVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVV--AI-YST 354 (580)
T ss_pred CCEEEEECCcCC---------------CC--C-HHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEE--Ee-eHH
Confidence 778889999743 11 2 24488888 899999999999999999999999999999 98 999
Q ss_pred hHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCC-CCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEec
Q psy4209 321 FANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEG-QGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYP 398 (856)
Q Consensus 321 F~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g-~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~p 398 (856)
|+..|.+||.+.++. .+.|++++.+| |+.| .||+|++ +| +.+++.++|||+|+.|
T Consensus 355 F~~ra~dQi~~~~a~------~~~pv~~v~~~~G~~g~dG~tH~~--~e---------------dia~lr~iP~l~V~~P 411 (580)
T PRK05444 355 FLQRAYDQVIHDVAL------QNLPVTFAIDRAGLVGADGPTHQG--AF---------------DLSYLRCIPNMVIMAP 411 (580)
T ss_pred HHHHHHHHHHHHhhh------cCCCEEEEEeCCCcCCCCCccccc--cH---------------HHHHHhcCCCCEEEee
Confidence 999999999887774 36999999997 5544 5999999 23 2377899999999999
Q ss_pred CCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcHHHHHH
Q psy4209 399 STPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLI 478 (856)
Q Consensus 399 stpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v~~~l~ 478 (856)
++|.|++.+|+.++.. .++|++|..++.++... +. + ..+..++|++.+.+++.++ |||+||.+|+.+++
T Consensus 412 sd~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~~-------~~-~-~~~~~~~Gk~~vl~~G~dv-tIia~G~~v~~al~ 480 (580)
T PRK05444 412 SDENELRQMLYTALAY-DDGPIAIRYPRGNGVGV-------EL-P-ELEPLPIGKGEVLREGEDV-AILAFGTMLAEALK 480 (580)
T ss_pred CCHHHHHHHHHHHHhC-CCCcEEEEecCCCCCCC-------CC-C-CcccccCCceEEEEcCCCE-EEEEccHHHHHHHH
Confidence 9999999999999942 37999999999886421 11 1 1345678998876777788 99999999999999
Q ss_pred HHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCCC
Q psy4209 479 EARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDPS 558 (856)
Q Consensus 479 ~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~~ 558 (856)
+++++. +++||++++|.|||.+.|.++++||++ +|+++|...++|+|++|+..+.+... ..|+.++|-++.
T Consensus 481 Aa~~L~----~~~VId~~~i~p~D~~~i~~~~~~~~~---vv~vEe~~~~gG~g~~va~~l~~~~~--~~~v~~ig~~d~ 551 (580)
T PRK05444 481 AAERLA----SATVVDARFVKPLDEELLLELAAKHDL---VVTVEEGAIMGGFGSAVLEFLADHGL--DVPVLNLGLPDE 551 (580)
T ss_pred HHHHhC----CCEEEEeCcCCccCHHHHHHHHhcCCe---EEEEECCCCCCCHHHHHHHHHHhhcC--CCCEEEEecCCc
Confidence 998764 899999999999999999999999988 99999999999999999999988642 357999999876
Q ss_pred CCCCCC---chhhHHHHHHHchHHhh
Q psy4209 559 SVPASG---LQAKHYLLAALNMEKKA 581 (856)
Q Consensus 559 ~~pa~g---~~~~h~~e~~~i~~~~a 581 (856)
..+... +...+....+.| ++.+
T Consensus 552 f~~~g~~~~l~~~~gl~~~~I-~~~i 576 (580)
T PRK05444 552 FIDHGSREELLAELGLDAEGI-ARRI 576 (580)
T ss_pred CCCCCCHHHHHHHHCcCHHHH-HHHH
Confidence 665322 233344444555 4443
No 18
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=8.9e-37 Score=333.76 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=150.2
Q ss_pred cEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCC
Q psy4209 11 GTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNE 90 (856)
Q Consensus 11 GvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse 90 (856)
.|||||||||||||+|.+.++..+.++.+|.+||||+++|||||++|||+++++|++++|+|+||+|||++|||+.|||+
T Consensus 189 Pvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~ 268 (358)
T COG1071 189 PVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHST 268 (358)
T ss_pred CEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCC
Confidence 58999999999999998888888878889999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcCCcCCC
Q psy4209 91 GDD-PSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGF 167 (856)
Q Consensus 91 ~D~-~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~~~~~~~ 167 (856)
+|+ .+||+++|.++|+++||| .+++++|++.|++|++++++|+++++++|++|+++|+++|.|++++.+++||.+.
T Consensus 269 sDd~~~YRskeE~~~~~~~DPi-~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~~Vy~~~ 345 (358)
T COG1071 269 SDDPSKYRSKEEVEEWKKRDPI-VRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEG 345 (358)
T ss_pred CCCccccCCHHHHHHHhccChH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhhhcccccC
Confidence 999 569999999999999998 9999999999999999999999999999999999999999999999999999875
No 19
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4e-34 Score=340.16 Aligned_cols=287 Identities=14% Similarity=0.052 Sum_probs=230.4
Q ss_pred hhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeec
Q psy4209 236 LLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWE 315 (856)
Q Consensus 236 ll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE 315 (856)
++.++.+|.+.+.|... ++ -+++|.++| +.|++|++|+|.+++|++.|+|+.|.+|++ +
T Consensus 332 la~~d~~iv~isadl~~----------------~~--~~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v--~ 390 (641)
T PRK12571 332 EAAEDSDIVAITAAMPL----------------GT--GLDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFC--A 390 (641)
T ss_pred HHhhCCCEEEEeCCccC----------------CC--ChHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEE--E
Confidence 45677888899999844 22 248888899 789999999999999999999999999999 9
Q ss_pred ccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcC-ccCC-CCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCe
Q psy4209 316 AQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLP-HGIE-GQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANW 393 (856)
Q Consensus 316 ~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP-~G~~-g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl 393 (856)
+ |.+|+..|.+||.+.++. .+.|++++.- .|+. +.||+|++. | +.+++.++|||
T Consensus 391 ~-f~~Fl~ra~dQI~~~~a~------~~lpv~~v~~~~G~~g~dG~THq~~--~---------------dia~lr~iPnl 446 (641)
T PRK12571 391 V-YSTFLQRGYDQLLHDVAL------QNLPVRFVLDRAGLVGADGATHAGA--F---------------DLAFLTNLPNM 446 (641)
T ss_pred e-hHHHHHHHHHHHHHHHhh------cCCCeEEEEECCCcCCCCCcccccc--H---------------HHHHHhcCCCC
Confidence 8 999999999999887763 3589999884 4654 559999993 2 13778999999
Q ss_pred EEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcH
Q psy4209 394 FVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKI 473 (856)
Q Consensus 394 ~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v 473 (856)
+|+.|++|.+++++|+.++.. .++|++|..||..+... ++ ++..+..++|++.+.+++.|+ |||+||.+|
T Consensus 447 ~V~~Psd~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~~-------~~-~~~~~~~~~gk~~vlr~G~di-tIva~G~~v 516 (641)
T PRK12571 447 TVMAPRDEAELRHMLRTAAAH-DDGPIAVRFPRGEGVGV-------EI-PAEGTILGIGKGRVPREGPDV-AILSVGAHL 516 (641)
T ss_pred EEEeeCCHHHHHHHHHHHHhC-CCCcEEEEEecCcCCcc-------cc-CCCCccccCceeEEEecCCCE-EEEEecHHH
Confidence 999999999999999999952 47999999998765321 12 333455678998876778888 999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhh-hCCCCeEE
Q psy4209 474 YYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVME-ITTDPVCY 552 (856)
Q Consensus 474 ~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~-~~~~~~~~ 552 (856)
+.+++||+++...|++++||++++|.|||.+.| .++.|+++ +++++|....+|+|++|++.+.+... .+..|+++
T Consensus 517 ~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i-~sv~k~~~---vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ 592 (641)
T PRK12571 517 HECLDAADLLEAEGISVTVADPRFVKPLDEALT-DLLVRHHI---VVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRT 592 (641)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHH-HHHhhhCC---EEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEE
Confidence 999999988655569999999999999999888 77778887 89999999999999999999998752 23568999
Q ss_pred ecCCCCCCCCCCchhhHH---HHHHHchHHhhh
Q psy4209 553 IGRDPSSVPASGLQAKHY---LLAALNMEKKAF 582 (856)
Q Consensus 553 vgr~~~~~pa~g~~~~h~---~e~~~i~~~~a~ 582 (856)
+|-|+...+......... ...+.| ++.+.
T Consensus 593 ig~~d~f~~~g~~~el~~~~gl~~~~I-~~~i~ 624 (641)
T PRK12571 593 LGLPDRFIDHASREEMYAEAGLTAPDI-AAAVT 624 (641)
T ss_pred EecCCcCCCCCCHHHHHHHhCcCHHHH-HHHHH
Confidence 999887666433222222 344555 54443
No 20
>KOG0450|consensus
Probab=100.00 E-value=1.1e-35 Score=334.28 Aligned_cols=210 Identities=32% Similarity=0.584 Sum_probs=145.1
Q ss_pred ccccccc-cCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHHhcccCCCCcc-cCCCCCCCCCCCCCCCC
Q psy4209 623 ASKWTPV-ERPRNPLNRDSFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSI-AIGNPTGQSSNGVGSSF 700 (856)
Q Consensus 623 ~~~~~~~-~~~~~~~~~~SfL~g~Na~YIEelYe~yl~DP~SVd~sWr~yF~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 700 (856)
++.+... +....+...++||+|+++.||||||+.|++||+|||.||++||.+...+.++.. ....++..+.....
T Consensus 31 a~~~~~~~r~~~~~~~td~Fl~g~ss~YveEmy~AW~~dP~SVh~SWDayFrn~~~~~~~~~~a~~~p~~~~~~~~~--- 107 (1017)
T KOG0450|consen 31 ASSFQQVPRSVAASVATDPFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYFRNVSAGAPPPAQASQAPLSRSAAVAG--- 107 (1017)
T ss_pred hhhhccccccccCcccccccccCcchHHHHHHHHHHHcCCchhhhhHHHHHHhcccCCCCccccccCCCcccccccc---
Confidence 3444443 333445667899999999999999999999999999999999999654322211 11111111100000
Q ss_pred CCCCCCCCCCccCCCccchhhhHhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCCCCCCCc-ccccccCCCCCc
Q psy4209 701 PRREETPIHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPT-QIYKNFAPLLNF 779 (856)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~LI~AYR~~GHl~A~lDPL~~~~~~~~~~~~el~~~~~-~~~~~~~~~lt~ 779 (856)
....+. .....+...+...++++|+.||+||+.+||..|+|||||+.........|. +++. +.+..| +|++
T Consensus 108 --t~~~~~--~~~~t~~s~~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~--~i~~~~~l~~Y--gf~E 179 (1017)
T KOG0450|consen 108 --TQSAVA--ARPNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPA--DIPEELTLAFY--GFTE 179 (1017)
T ss_pred --cccccc--cccCCCcccccHHHHHHHHHHHHHHHhcccccccCCccccccccccccCCC--CCChhhhhhhc--CCch
Confidence 000000 000001111224579999999999999999999999999964322111111 0111 112122 5899
Q ss_pred cCCCceeecCCCccccCCCCCCcHHHHHHHHHHHcCCceeeecccCCCHHHHHHHHHHhcCCCC
Q psy4209 780 PDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNF 843 (856)
Q Consensus 780 ~DLd~~f~~~~~~~~g~~~~~~tL~eii~~L~~~YCG~IG~EfmHI~d~eer~WL~~riE~~~~ 843 (856)
+|||++|.++..+.++++...+|||||+++|+++|||+||+|||||.|.++++||++|||.+..
T Consensus 180 ~DLDref~L~~t~Fi~~~~~~ltLreIl~rlE~~YC~~igvEfmhI~~~eqcnWir~k~EtP~~ 243 (1017)
T KOG0450|consen 180 ADLDREFHLPTTTFIGGGESSLTLREILRRLEKAYCGSIGVEFMHINDLEQCNWIRQKFETPGP 243 (1017)
T ss_pred hhccceeccCCcccccCCCccccHHHHHHHHHHHhhccceeEEEeeCcHHHhHHHHHhccCCCc
Confidence 9999999987666777778889999999999999999999999999999999999999999886
No 21
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=7.3e-36 Score=325.81 Aligned_cols=145 Identities=26% Similarity=0.383 Sum_probs=130.7
Q ss_pred cEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCC
Q psy4209 11 GTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNE 90 (856)
Q Consensus 11 GvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse 90 (856)
.||||||||||||||+.++++++.+++++|++||||+++||||||++|++|+++|++|+|+|+||+|||++|||++|||+
T Consensus 153 PvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~ 232 (300)
T PF00676_consen 153 PVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSE 232 (300)
T ss_dssp SEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SST
T ss_pred CeEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCHHHHHHHHhc-CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy4209 91 GDDPS-FTQPLMYEKIKQT-KPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDS 156 (856)
Q Consensus 91 ~D~~~-yr~~~e~~~~~~~-dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~ 156 (856)
+|++. ||+++|++.|+++ ||+ .+|+++|+++|++|++++++|+++++++|++++++|+++|.|++
T Consensus 233 ~Dd~~~yr~~~e~~~~~~~~DPi-~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~ 299 (300)
T PF00676_consen 233 SDDPTFYRSPEEYEEWWKKRDPI-KRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDP 299 (300)
T ss_dssp TSCGGGTSHHHHHHHHHHCT-HH-HHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G
T ss_pred CCCccccCCHHHHHHHHhcCcHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99876 6669999988776 676 99999999999999999999999999999999999999999875
No 22
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6.3e-33 Score=325.98 Aligned_cols=248 Identities=15% Similarity=0.106 Sum_probs=204.2
Q ss_pred hccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecc
Q psy4209 237 LDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEA 316 (856)
Q Consensus 237 l~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~ 316 (856)
+.++.+|+++|+|++. |+. +..+.++| |.|++|++|+|++++|++.|+|+.|.+|++ ++
T Consensus 371 a~~D~~Iv~l~adm~g----------------gt~--~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv--~~ 429 (641)
T PLN02234 371 AEADKDIVAIHAAMGG----------------GTM--LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFC--TI 429 (641)
T ss_pred HHHCcCEEEEECCCCC----------------Ccc--hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEE--Ee
Confidence 3456778899999843 332 56777788 899999999999999999999999999999 98
Q ss_pred cchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEc-CccCC-CCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeE
Q psy4209 317 QFGDFANNAQAVFDQWISSARSKWNIDSGLVLLL-PHGIE-GQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWF 394 (856)
Q Consensus 317 qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~l-P~G~~-g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~ 394 (856)
|++|+..|++||.+.++- .+.|++++. ..|+. +.||+|++. | + .+.+.++|||+
T Consensus 430 -fs~Fl~RA~DQI~~dva~------~~lpV~~v~~~aG~~g~dG~TH~~~--~-------D--------ia~lr~iPnl~ 485 (641)
T PLN02234 430 -YSSFMQRAYDQVVHDVDL------QKLPVRFAIDRAGLMGADGPTHCGA--F-------D--------VTFMACLPNMI 485 (641)
T ss_pred -hHHHHHHHHHHHHHHHhh------cCCCEEEEEeCCccCCCCCcccccc--H-------H--------HHHHhcCCCCE
Confidence 999999999999888762 357888887 34664 479999993 2 1 23445999999
Q ss_pred EEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccC--CCccccCCCcccccCCCCceEEEEcCCc
Q psy4209 395 VLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLD--TKFRAYLPDTMADRNKDKVEKYILCSGK 472 (856)
Q Consensus 395 V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~--~~f~~~i~~a~~~~~~~~v~tvv~~~g~ 472 (856)
|+.|++|+|++++|+.++.. .++|++|.+||..+... ++ +. ..+..++|++.+.+++.|+ |||+||.+
T Consensus 486 V~~Psd~~E~~~~l~~a~~~-~~~Pv~ir~~R~~~~~~-------~~-~~~~~~~~~~iGk~~vlreG~dv-tIva~G~~ 555 (641)
T PLN02234 486 VMAPSDEAELFNMVATAAAI-DDRPSCFRYHRGNGIGV-------SL-PPGNKGVPLQIGRGRILRDGERV-ALLGYGSA 555 (641)
T ss_pred EEeeCCHHHHHHHHHHHHhC-CCCCEEEEeeccccccc-------cc-CCCCccccccCceEEEEEeCCCE-EEEEecHH
Confidence 99999999999999998753 36899999999876321 11 11 1244678999887888888 99999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhh
Q psy4209 473 IYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVM 543 (856)
Q Consensus 473 v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~ 543 (856)
|+.+++||+.++..|++++|||+++|+|||.+.| .++.|+++ +|++.||+..+|+|++|++.+.+.-
T Consensus 556 v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i-~sl~k~~~---~vVt~Ee~~~GG~Gs~Va~~l~e~~ 622 (641)
T PLN02234 556 VQRCLEAASMLSERGLKITVADARFCKPLDVALI-RSLAKSHE---VLITVEEGSIGGFGSHVVQFLALDG 622 (641)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHH-HHHHHhCC---EEEEECCCCCCcHHHHHHHHHHHcC
Confidence 9999999987655569999999999999999885 67888888 7888899988999999999998863
No 23
>KOG0225|consensus
Probab=100.00 E-value=6e-34 Score=300.72 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=147.2
Q ss_pred cEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCC
Q psy4209 11 GTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNE 90 (856)
Q Consensus 11 GvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse 90 (856)
.+|||||||.|||.|+.+++.+.+....|+ .| ||+++|||+|+++|++|+++|++|+++|+||+++|+.|||++|||+
T Consensus 217 P~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSm 294 (394)
T KOG0225|consen 217 PVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSM 294 (394)
T ss_pred CEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeeccccc
Confidence 489999999999999999999988899988 56 9999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCHHHHHHHH-hcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcCCcCCCC
Q psy4209 91 GDD-PSFTQPLMYEKIK-QTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFE 168 (856)
Q Consensus 91 ~D~-~~yr~~~e~~~~~-~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~~~~~~~~ 168 (856)
+|+ .+||+.+|+++.| ++||| ..++++|++.++.|++|+++|+++++++|++|+++|+++|.|++++++.++|..-.
T Consensus 295 SDPg~sYRtReEiq~vR~kRDPI-~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~~~~ 373 (394)
T KOG0225|consen 295 SDPGTSYRTREEIQEVRQKRDPI-EGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYVKGT 373 (394)
T ss_pred CCCCcccchHHHHHHHHhccChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhccCC
Confidence 999 6799999999998 68887 99999999999999999999999999999999999999999999999999987544
No 24
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.4e-30 Score=308.75 Aligned_cols=272 Identities=14% Similarity=0.069 Sum_probs=216.3
Q ss_pred hhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeec
Q psy4209 236 LLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWE 315 (856)
Q Consensus 236 ll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE 315 (856)
++.++.+|+++++|.+ |.++. ..+.++| |.|++|++|+|++++|++.|+|+.|.+|++ +
T Consensus 369 ~a~~d~~vv~ita~m~-----------------g~~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv--~ 427 (677)
T PLN02582 369 EAEVDKDVVAIHAAMG-----------------GGTGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFC--A 427 (677)
T ss_pred HHccCCCEEEEeCCCC-----------------Cccch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEE--E
Confidence 4456777889999853 34554 5899999 899999999999999999999999999999 8
Q ss_pred ccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCC-CCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCe
Q psy4209 316 AQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEG-QGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANW 393 (856)
Q Consensus 316 ~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g-~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl 393 (856)
+ |.+|+.-|.+||.+-++- .+.|+|++++| |+.| .||+|++. | +.+++.++|||
T Consensus 428 ~-fs~Fl~RA~DQI~~dval------~~lpVv~v~~~aG~vg~dG~TH~~~--~---------------Dia~lr~iPnl 483 (677)
T PLN02582 428 I-YSSFLQRGYDQVVHDVDL------QKLPVRFAMDRAGLVGADGPTHCGA--F---------------DVTYMACLPNM 483 (677)
T ss_pred e-cHHHHHHHHHHHHHHHHh------cCCCEEEEEECCCcccCCCCccccc--H---------------HHHHHhcCCCC
Confidence 7 999999999999887762 35899999997 5544 59999992 2 13566799999
Q ss_pred EEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccC--CCccccCCCcccccCCCCceEEEEcCC
Q psy4209 394 FVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLD--TKFRAYLPDTMADRNKDKVEKYILCSG 471 (856)
Q Consensus 394 ~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~--~~f~~~i~~a~~~~~~~~v~tvv~~~g 471 (856)
+|++|+++.+++++|+.++.. .+.|++|..||.... .. ++ +. ..+..++|++.+.+++.++ +||+||.
T Consensus 484 ~V~~Psd~~E~~~~l~~al~~-~~gPv~IR~pr~~~~-~~------~~-~~~~~~~~~~iGk~~vlr~G~dv-tIva~G~ 553 (677)
T PLN02582 484 VVMAPSDEAELFHMVATAAAI-DDRPSCFRYPRGNGI-GV------QL-PPNNKGIPIEVGKGRILLEGERV-ALLGYGT 553 (677)
T ss_pred EEEeeCCHHHHHHHHHHHHhC-CCCCEEEEEecCCCC-Cc------cc-CCcccccccccCceEEEEeCCCE-EEEeecH
Confidence 999999999999999999953 359999999987421 10 11 21 1245678998876788888 9999999
Q ss_pred cHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhh-CCCCe
Q psy4209 472 KIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEI-TTDPV 550 (856)
Q Consensus 472 ~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~-~~~~~ 550 (856)
+|+.+++||+.++..|++++|||+++|.|||.+.| .++.|+.+ +|++.||+..+|+|+.|+..+.+.-.. ...++
T Consensus 554 ~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i-~~~~k~~~---~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v 629 (677)
T PLN02582 554 AVQSCLAAASLLERHGLSATVADARFCKPLDRALI-RSLAKSHE---VLITVEEGSIGGFGSHVAQFMALDGLLDGKLKW 629 (677)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHH-HHHhhhCC---EEEEECCCCCCcHHHHHHHHHHhcCCccCCcee
Confidence 99999999987655569999999999999999988 55666666 677778887899999999999885211 11368
Q ss_pred EEecCCCCCCCCCCchh
Q psy4209 551 CYIGRDPSSVPASGLQA 567 (856)
Q Consensus 551 ~~vgr~~~~~pa~g~~~ 567 (856)
+++|-|+.-.+ .|...
T Consensus 630 ~~~Gi~d~F~~-~G~~~ 645 (677)
T PLN02582 630 RPLVLPDRYID-HGAPA 645 (677)
T ss_pred EEecCCCcccC-cCCHH
Confidence 88898886554 44333
No 25
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.98 E-value=2.1e-32 Score=300.61 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=149.1
Q ss_pred cEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCC
Q psy4209 11 GTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNE 90 (856)
Q Consensus 11 GvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse 90 (856)
.+||||+||+||++|+...+++..+++++|++||+|+++|||+|+++|++++++|++++|+++||+|||++|||++|||+
T Consensus 162 Pvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 241 (315)
T TIGR03182 162 PVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSM 241 (315)
T ss_pred CEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCC
Confidence 39999999999999998888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcCCcC
Q psy4209 91 GDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWE 165 (856)
Q Consensus 91 ~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~~~~~ 165 (856)
+|++.||+++|++.|+++||+ .+|+++|+++|++|++++++++++++++|++++++|++.|.|++++.++++|+
T Consensus 242 ~D~~~Yr~~~e~~~~~~~dPi-~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 242 SDPAKYRSKEEVEEWRKRDPI-EKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred CCccccCCHHHHHHHHhcCHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 999999999999999999998 99999999999999999999999999999999999999999999999988874
No 26
>PRK05899 transketolase; Reviewed
Probab=99.97 E-value=7.7e-31 Score=312.76 Aligned_cols=400 Identities=14% Similarity=0.091 Sum_probs=258.3
Q ss_pred CccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCC
Q psy4209 7 YNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRH 86 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~ 86 (856)
|...=+|+||.||+|+++++..... ...+.+++++||.+++.|||+|++++..|.++|.+. ++|++|++.|+|-+
T Consensus 177 ~~L~~li~v~dnN~~~~~~~~~~~~-~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~----~~P~vI~v~t~kg~ 251 (624)
T PRK05899 177 LKLGNLIVIYDDNRISIDGPTEGWF-TEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKAS----TKPTLIIAKTIIGK 251 (624)
T ss_pred hCCCCEEEEEECCCCcccccccccc-cccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhc----CCCEEEEEEeEecc
Confidence 3444589999999999998876443 456889999999999999999999999999988743 68999999999999
Q ss_pred CCCCCCCC-CCCC----HHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCc
Q psy4209 87 GHNEGDDP-SFTQ----PLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWID 161 (856)
Q Consensus 87 GHse~D~~-~yr~----~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~ 161 (856)
||+..++. .|.. +++++.++++ | + ++. +..++.++ +.+.++.+.+.+. . ..
T Consensus 252 g~~~~e~~~~~H~~~~~~~~~~~~~~~----------l---~-~~~-~~~~~~~~----~~~~~~~~~~~~~-~----~~ 307 (624)
T PRK05899 252 GAPNKEGTHKVHGAPLGAEEIAAAKKE----------L---G-WDY-EPFEVPEE----VYAHWRKAKERGA-K----AE 307 (624)
T ss_pred CCccccCCCcccCCCCCHHHHHHHHHH----------c---C-CCc-ccccCChH----HHHHHHHhhhcCc-h----hH
Confidence 99854432 3431 2333332211 1 1 000 01111111 1112211111000 0 00
Q ss_pred CCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHHHHHhhhhccCC
Q psy4209 162 VPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSGH 241 (856)
Q Consensus 162 ~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~la~~sll~eg~ 241 (856)
..|... +. . + .+..|. ++++ ++..++.++.
T Consensus 308 ~~~~~~---------------------~~-~------~----------~~~~~~----------a~~~--~l~~l~~~~~ 337 (624)
T PRK05899 308 AEWNEK---------------------FA-G------E----------KVATRK----------ASGK--ALNALAKALP 337 (624)
T ss_pred HHHHHh---------------------hc-c------c----------chHHHH----------HHHH--HHHHHHhhCC
Confidence 001000 00 0 0 000011 1112 2345567788
Q ss_pred eEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccC----CcEEEccCcchHHHHHHHhhhccCC-CCcceeec-
Q psy4209 242 HIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAG----KFHVYNSILNEMAALSFEYGYSLVD-PNFLVIWE- 315 (856)
Q Consensus 242 ~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g----~~rV~nspLsE~~i~G~~~G~a~~g-~~~l~~wE- 315 (856)
+|+++++|+..+| +..+.+ .++|| +.|++|++|+|++++|++.|+|+.| .+|++ +
T Consensus 338 ~v~vl~~D~~~~~----------------~~~~~~-~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~--~t 398 (624)
T PRK05899 338 ELVGGSADLAGSN----------------NTKIKG-SKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFG--GT 398 (624)
T ss_pred CEEEEeCCCcccc----------------Cccccc-ccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEE--EE
Confidence 9999999996532 222222 22333 4899999999999999999999999 99999 8
Q ss_pred -ccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cC-C-CCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCC
Q psy4209 316 -AQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GI-E-GQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDA 391 (856)
Q Consensus 316 -~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~-~-g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~ 391 (856)
++|.||+. +||.+ .+ . ...|++++..| |+ . +.|++| |+ +|- .+++.++|
T Consensus 399 ~~~F~~r~~---~qir~--~~---~--~~~pv~~v~~~~G~~~g~~G~tH-q~-~ed---------------ia~~r~iP 451 (624)
T PRK05899 399 FLVFSDYAR---NAIRL--AA---L--MKLPVIYVFTHDSIGVGEDGPTH-QP-VEQ---------------LASLRAIP 451 (624)
T ss_pred cHHHHHHHH---HHHHH--HH---h--cCCCEEEEEECCCcCcCCCCCCc-cc-HHH---------------HHHHHhCC
Confidence 88888765 44543 11 1 24688888655 76 3 479999 53 552 35778999
Q ss_pred CeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCC
Q psy4209 392 NWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSG 471 (856)
Q Consensus 392 gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g 471 (856)
||+|+.|++|.+++++|+.++.. .++|++|.++|.-.... .+ ....+..++|. .+.+++.|+ |||+||.
T Consensus 452 ~~~V~~P~d~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~~------~~--~~~~~~~~~G~-~~l~~G~dv-tiia~G~ 520 (624)
T PRK05899 452 NLTVIRPADANETAAAWKYALER-KDGPSALVLTRQNLPVL------ER--TAQEEGVAKGG-YVLRDDPDV-ILIATGS 520 (624)
T ss_pred CcEEEeCCCHHHHHHHHHHHHHc-CCCCEEEEEeCCCCCCc------CC--ccccccccCCc-EEEecCCCE-EEEEeCH
Confidence 99999999999999999999942 27999999986432111 00 00224456675 444677888 9999999
Q ss_pred cHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHH---HHHHH-hcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCC
Q psy4209 472 KIYYDLIEARDAANLTEQIAIARLEQISPFPYRA---FINDV-SSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITT 547 (856)
Q Consensus 472 ~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~---i~~sv-~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~ 547 (856)
+|+.++++++.+...|++++||++++|.|||.+. +..-+ +... -+++.|++...| |. +.+ .
T Consensus 521 ~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~----~~v~~e~~~~~g-~~-------~~~---~ 585 (624)
T PRK05899 521 EVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVT----ARVAVEAGVADG-WY-------KYV---G 585 (624)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhcccccccc----ceEEEccCCccc-hh-------hhc---C
Confidence 9999999998765456999999999999999993 43434 2222 234446655555 41 111 2
Q ss_pred CCeEEecCCC
Q psy4209 548 DPVCYIGRDP 557 (856)
Q Consensus 548 ~~~~~vgr~~ 557 (856)
.++.++|-++
T Consensus 586 ~~~~~iGv~~ 595 (624)
T PRK05899 586 LDGKVLGIDT 595 (624)
T ss_pred CCceEEECCC
Confidence 2567888877
No 27
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.97 E-value=1.4e-31 Score=303.10 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=150.2
Q ss_pred EEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCCC
Q psy4209 12 TIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNEG 91 (856)
Q Consensus 12 vIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse~ 91 (856)
+||||+||+|+++|+...+++...++++|++||+|+++|||+|+++|++++++|++++|+++||+|||++|||++|||++
T Consensus 254 vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 254 IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCC
Confidence 99999999999999988887777899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcCCcCCC
Q psy4209 92 DDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGF 167 (856)
Q Consensus 92 D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~~~~~~~ 167 (856)
|++.||+++|++.|+++||| .+|+++|+++|++|++++++++++++++|++++++|+++|.|+++++++++|++.
T Consensus 334 D~~~YR~~~e~~~~~~~DPi-~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 408 (433)
T PLN02374 334 DPDELRDPAEKAHYAARDPI-AALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADP 408 (433)
T ss_pred CccccCCHHHHHHHHcCCcH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCC
Confidence 99999999999999999997 9999999999999999999999999999999999999999999999999999864
No 28
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.97 E-value=1.3e-31 Score=298.04 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=142.7
Q ss_pred EEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCCC
Q psy4209 12 TIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNEG 91 (856)
Q Consensus 12 vIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse~ 91 (856)
+||||+||+||+||+...+.....+++++ ++||+++|||||+++|++|++.|++++|+ +||+|||++|||++|||++
T Consensus 191 vvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~ 267 (362)
T PLN02269 191 VIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMS 267 (362)
T ss_pred EEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCC
Confidence 99999999999999988887776666544 68999999999999999999999999999 9999999999999999999
Q ss_pred CCC-CCCCHHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcCCcCCC
Q psy4209 92 DDP-SFTQPLMYEKIKQ-TKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGF 167 (856)
Q Consensus 92 D~~-~yr~~~e~~~~~~-~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~~~~~~~ 167 (856)
|++ +||+++|++.|++ +||+ .+|+++|+++|++|++++++++++++++|++++++|+++|.|++++.++++|+..
T Consensus 268 D~~~~YR~~~E~~~~~~~~DPi-~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 344 (362)
T PLN02269 268 DPGSTYRTRDEISGVRQERDPI-ERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYVKG 344 (362)
T ss_pred CCCcccCCHHHHHHHHhCCCHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCC
Confidence 986 7999999999985 8887 9999999999999999999999999999999999999999999999999999854
No 29
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=6.5e-32 Score=317.67 Aligned_cols=166 Identities=34% Similarity=0.652 Sum_probs=127.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHHhcccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q psy4209 636 LNRDSFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSSFPRREETPIHGEFVNP 715 (856)
Q Consensus 636 ~~~~SfL~g~Na~YIEelYe~yl~DP~SVd~sWr~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (856)
+.++++|+|+|+.|||+||++|++||+|||++|+.||+++... +..++.....+ . .
T Consensus 4 ~~~~~~l~g~n~~~ie~ly~~~~~~p~svd~~w~~~F~~~~~~-----------------~~~~~~~~~~~-~-----~- 59 (906)
T COG0567 4 FLNTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDP-----------------VRESFRRLAKK-G-----N- 59 (906)
T ss_pred ccccccccCcchHHHHHHHHHHhhCCcccCHHHHHHHHhcCcc-----------------hhhhhhhhccc-c-----c-
Confidence 4567899999999999999999999999999999999985321 00111111100 0 0
Q ss_pred ccchhhhHhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCccCCCceeecCCCcccc
Q psy4209 716 DENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIG 795 (856)
Q Consensus 716 ~~~~~~~~~~~~v~~LI~AYR~~GHl~A~lDPL~~~~~~~~~~~~el~~~~~~~~~~~~~~lt~~DLd~~f~~~~~~~~g 795 (856)
. .....++.+|.+||+|||.|||+.|+||||++. + ...++|+ +..+ +||++||++.|++. . .+.
T Consensus 60 ~--~~~~~~~~~~~~li~ayR~~Ghl~a~ldPL~~~-~---~~~~~l~------~~~~--glt~~d~~~~~~~~-~-~~~ 123 (906)
T COG0567 60 D--PDATLKSVKVLRLINAYRSRGHLHANLDPLGLK-R---PDVPELD------PEFH--GLTEADLDETFNIG-D-GFL 123 (906)
T ss_pred c--hhhhHHHHHHHHHHHHHHHhchhhhcCCcccCC-C---CCccccC------Hhhc--CCCHHHHhcccccc-c-ccc
Confidence 0 122356899999999999999999999999962 2 1234553 2233 58999999999753 2 222
Q ss_pred CCCCCCcHHHHHHHHHHHcCCceeeecccCCCHHHHHHHHHHhcCCC
Q psy4209 796 GDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPN 842 (856)
Q Consensus 796 ~~~~~~tL~eii~~L~~~YCG~IG~EfmHI~d~eer~WL~~riE~~~ 842 (856)
++..+||+|+|+.|+++|||+||+|||||.|.+||+||++|||+..
T Consensus 124 -~~~~~~l~e~~~~l~~~Ycgsig~E~~hi~~~~~~~Wl~~riE~~~ 169 (906)
T COG0567 124 -GKETMTLRELIEILKKTYCGSIGVEYMHISDPEEKRWLQERIESGK 169 (906)
T ss_pred -ccccccHHHHHHHHHHHhccceeeeeeccCCHHHHHHHHHHHhcCC
Confidence 3567899999999999999999999999999999999999999933
No 30
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.97 E-value=2.2e-31 Score=295.02 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=149.1
Q ss_pred cEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCC
Q psy4209 11 GTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNE 90 (856)
Q Consensus 11 GvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse 90 (856)
.+||||+||+|+++|+.+.++....++++|++||+|+++|||+|+++|+++++.|++++|++++|+|||+.|||++|||+
T Consensus 187 Pvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~ 266 (341)
T CHL00149 187 PIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSL 266 (341)
T ss_pred CEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCC
Confidence 49999999999999998888777889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcCCcC
Q psy4209 91 GDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWE 165 (856)
Q Consensus 91 ~D~~~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~~~~~ 165 (856)
+|++.||+++|++.|+++||+ .+|+++|+++|++|++++++++++++++|++++++|+++|.|++++++++||+
T Consensus 267 ~D~~~YR~~~e~~~~~~~DPi-~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 340 (341)
T CHL00149 267 ADPDELRSKQEKEAWVARDPI-KKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLFA 340 (341)
T ss_pred CCCccCCCHHHHHHHhcCCHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccc
Confidence 999999999999999999997 99999999999999999999999999999999999999999999999999885
No 31
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.97 E-value=7.9e-31 Score=316.04 Aligned_cols=181 Identities=28% Similarity=0.547 Sum_probs=122.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHHhcccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccchh
Q psy4209 641 FLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSSFPRREETPIHGEFVNPDENIN 720 (856)
Q Consensus 641 fL~g~Na~YIEelYe~yl~DP~SVd~sWr~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (856)
||+|.|+.|||+||++|++||+|||++|+.||+++..+.+.. . +. ..+....+...+....... .... ...
T Consensus 1 fl~g~n~~yie~lY~~~~~dP~sv~~~w~~~F~~~~~~~~~~---~-~~---~~~~~~~~~~~~~~~~~~~-~~~~-~~~ 71 (929)
T TIGR00239 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQLPGPGPAP---D-QF---HSPTRSYFRRLAKDASRGS-VTIS-DPD 71 (929)
T ss_pred CCCCCCHHHHHHHHHHHHhChhcCCHHHHHHHHhCcccCCcc---c-cc---cCchhhhhccccccccccc-cccc-chh
Confidence 789999999999999999999999999999999863100000 0 00 0000000111000000000 0000 001
Q ss_pred hhHhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCccCCCceeecCCCccccCC-CC
Q psy4209 721 LSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGD-QS 799 (856)
Q Consensus 721 ~~~~~~~v~~LI~AYR~~GHl~A~lDPL~~~~~~~~~~~~el~~~~~~~~~~~~~~lt~~DLd~~f~~~~~~~~g~~-~~ 799 (856)
...++.++.+||+|||.+||+.|+||||++..+. ..++|+ +. .| +|+++|||+.|.++ +..++.. ..
T Consensus 72 ~~~~~~~v~~LI~ayR~~GHl~A~lDPL~~~~~~---~~~~l~---~~---~~--gl~~~dl~~~~~~~-~~~~~~~~~~ 139 (929)
T TIGR00239 72 TNVSQVKVLQLIRAYRFRGHLHANLDPLGLKQQD---KVPELD---LS---FY--GLTEADLQETFNIG-SFVSGKDATM 139 (929)
T ss_pred hhHHHHHHHHHHHHHHHhcchheecCCCCCCCCC---CCCccC---hh---hc--CCChHHhCceeeec-ccccCccccc
Confidence 1124789999999999999999999999963221 223442 22 23 48999999999874 2112322 22
Q ss_pred CCcHHHHHHHHHHHcCCceeeecccCCCHHHHHHHHHHhcCCC
Q psy4209 800 SLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPN 842 (856)
Q Consensus 800 ~~tL~eii~~L~~~YCG~IG~EfmHI~d~eer~WL~~riE~~~ 842 (856)
.+||+|||++|+++|||+||+|||||.|.+||+|||+|||+..
T Consensus 140 ~~~l~eii~~L~~~YCg~ig~E~~hi~~~~~r~Wl~~~iE~~~ 182 (929)
T TIGR00239 140 KLSNLELLQALKQTYCGSIGAEYMHITSTEEKRWLQQRIESGE 182 (929)
T ss_pred cCCHHHHHHHHHHHhcCcceeeeecCCCHHHHHHHHHHHhCCC
Confidence 4699999999999999999999999999999999999999765
No 32
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.97 E-value=5.2e-31 Score=319.08 Aligned_cols=176 Identities=31% Similarity=0.584 Sum_probs=124.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHHhcccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCc
Q psy4209 637 NRDSFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSSFPRREETPIHGEFVNPD 716 (856)
Q Consensus 637 ~~~SfL~g~Na~YIEelYe~yl~DP~SVd~sWr~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (856)
.+.|||+|.|+.|||+||++|++||+|||++|+.||+++....+ . .+ ..+....+...... ...
T Consensus 9 ~~~~~~~~~n~~yie~ly~~~~~dp~sV~~sw~~~F~~~~~~~~-~-----~~---~~~~~~~~~~~~~~-------~~~ 72 (924)
T PRK09404 9 LDSSFLFGANAAYIEELYEQYLKDPDSVDEEWRAFFDGLPGVAP-D-----VA---HSAVRESFRRLAKP-------ARV 72 (924)
T ss_pred hhcccCCCCCHHHHHHHHHHHhhChhhcCHHHHHHHHhcccccc-c-----cc---cchhhhhhhhcccc-------ccc
Confidence 45689999999999999999999999999999999998631000 0 00 00000001100000 000
Q ss_pred cchhhhHhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCccCCCceeecCCCccccC
Q psy4209 717 ENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGG 796 (856)
Q Consensus 717 ~~~~~~~~~~~v~~LI~AYR~~GHl~A~lDPL~~~~~~~~~~~~el~~~~~~~~~~~~~~lt~~DLd~~f~~~~~~~~g~ 796 (856)
.. ....+++++.+||+|||.+||+.|+||||++..+. ..++|+ +. .| +|+++|||+.|.++ +...+
T Consensus 73 ~~-~~~~~~~~v~~Li~ayR~~GHl~A~lDPL~~~~~~---~~~~L~---~~---~~--gl~~~dl~~~~~~~-~~~~~- 138 (924)
T PRK09404 73 SS-AVSDPQVKVLQLINAYRFRGHLAANLDPLGLWKRP---DVPELD---PA---FY--GLTEADLDRTFNTG-SLALG- 138 (924)
T ss_pred ch-hhhhHHHHHHHHHHHHHHhCchheecCCCCCccCC---CCccCC---hh---hc--CCChHHcCCccccC-ccccC-
Confidence 00 11124689999999999999999999999973221 233342 22 33 58999999999763 21122
Q ss_pred CCCCCcHHHHHHHHHHHcCCceeeecccCCCHHHHHHHHHHhcCCCC
Q psy4209 797 DQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNF 843 (856)
Q Consensus 797 ~~~~~tL~eii~~L~~~YCG~IG~EfmHI~d~eer~WL~~riE~~~~ 843 (856)
...+||+|||++|+++|||+||+|||||+|.+||+||++|||+...
T Consensus 139 -~~~~~l~eii~~L~~~Ycg~ig~E~~hi~~~~er~Wl~~~iE~~~~ 184 (924)
T PRK09404 139 -KETATLREIIEALKKTYCGSIGVEYMHISDPEERRWLQQRIESGRP 184 (924)
T ss_pred -CCCCcHHHHHHHHHHHhcccHhheeccCCCHHHHHHHHHHHhCCCC
Confidence 3347999999999999999999999999999999999999997665
No 33
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.97 E-value=2.4e-31 Score=282.63 Aligned_cols=102 Identities=63% Similarity=1.091 Sum_probs=99.7
Q ss_pred CCCCCCCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 1 ls~l~~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
|++|++|.|||+|||||||||||||++++++++.+++++|++||||++|||||||+||++|+++|++|+|+|+||+|||+
T Consensus 164 lA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~ 243 (265)
T cd02016 164 LSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDL 243 (265)
T ss_pred HHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCHHHH
Q psy4209 81 IGYRRHGHNEGDDPSFTQPLMY 102 (856)
Q Consensus 81 ~tYR~~GHse~D~~~yr~~~e~ 102 (856)
+|||++|||++|+|+||||.||
T Consensus 244 ~tYR~~GHse~D~p~~t~p~my 265 (265)
T cd02016 244 VCYRRHGHNELDEPSFTQPLMY 265 (265)
T ss_pred EEecCCCCCCcCCccccCCCcC
Confidence 9999999999999999999876
No 34
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.96 E-value=2e-29 Score=279.92 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=148.6
Q ss_pred cEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCC
Q psy4209 11 GTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNE 90 (856)
Q Consensus 11 GvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse 90 (856)
.+||||+||+|+++|+...+.....++++|++||+|+++|||+|+++|+++++.|++++|+++||+|||+.|||++|||+
T Consensus 174 Pvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~ 253 (341)
T TIGR03181 174 PVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTT 253 (341)
T ss_pred CEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCC
Confidence 39999999999999987766666778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcCCcCCC
Q psy4209 91 GDDP-SFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGF 167 (856)
Q Consensus 91 ~D~~-~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~~~~~~~ 167 (856)
+|++ .||+++|++.|+++||+ .+|+++|+++|++|++++++++++++++|++++++|+++|.|++++.+++||+++
T Consensus 254 ~D~~~~YR~~~e~~~~~~~Dpi-~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~~~ 330 (341)
T TIGR03181 254 ADDPTRYRTKEEEEEWRKKDPI-LRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAEL 330 (341)
T ss_pred CCCCccCCCHHHHHHHhcCCHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCC
Confidence 9987 79999999999999998 9999999999999999999999999999999999999999999999999999863
No 35
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.96 E-value=4.5e-28 Score=285.44 Aligned_cols=284 Identities=13% Similarity=0.055 Sum_probs=227.9
Q ss_pred hhHHHHHHHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhh
Q psy4209 224 DWAMAEALALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGY 303 (856)
Q Consensus 224 dw~~aE~la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~ 303 (856)
.|..+=.-+...++.++.+|++++.|...| + -+.++.++| |.|++|++|+|+.++|++.|+
T Consensus 382 s~~~~f~~aL~~la~~D~~Iv~Itadm~~g----------------t--gl~~f~~~f-PdRffDvGIAEQhaVt~AAGL 442 (701)
T PLN02225 382 TYSDCFVEALVMEAEKDRDIVVVHAGMEMD----------------A--SLITFQERF-PDRFFNVGMAEQHAVTFSAGL 442 (701)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCccCc----------------c--cHHHHHHHc-cccccccCccHHHHHHHHHHH
Confidence 454433344456788999999999998553 1 278899999 899999999999999999999
Q ss_pred ccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCC-CCccCCCCchhhhhhhcCCCCcchhh
Q psy4209 304 SLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEG-QGPEHSSARPERFLELCSDSPRCVEL 382 (856)
Q Consensus 304 a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g-~Gp~HSsar~Er~lql~~e~~~~~~~ 382 (856)
|+.|.+|++ +++ .+|+.-|+|||.+-++.... .+++++.- .|+.| .||+|++. +
T Consensus 443 A~~G~kPvv--~iy-stFlqRAyDQI~~Dval~~l----pV~~vid~-aGlvg~DG~TH~g~--~--------------- 497 (701)
T PLN02225 443 SSGGLKPFC--IIP-SAFLQRAYDQVVHDVDRQRK----AVRFVITS-AGLVGSDGPVQCGA--F--------------- 497 (701)
T ss_pred HHCCCEEEE--Eee-hhHHHHHHHHHHHHHHhhcC----CceEEEEC-CccCCCCCcccccc--H---------------
Confidence 999999999 766 79999999999988875542 45666654 36644 69999993 2
Q ss_pred hhhhhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCC
Q psy4209 383 DMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDK 462 (856)
Q Consensus 383 ~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~ 462 (856)
+.+++.++|||+|++|+++.+++++|+.++. ..+.|++|..||..+..... ++ + ..+..++|++.+.+++.+
T Consensus 498 Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~-~~~gPv~IR~pRg~~~~~~~-----~~-~-~~~~~~iGK~~vlreG~d 569 (701)
T PLN02225 498 DIAFMSSLPNMIAMAPADEDELVNMVATAAY-VTDRPVCFRFPRGSIVNMNY-----LV-P-TGLPIEIGRGRVLVEGQD 569 (701)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-cCCCCEEEEecccccCCCCc-----CC-C-CCccccCcceEEEEeCCC
Confidence 2478899999999999999999999999884 24789999999986532100 11 2 135567899887788888
Q ss_pred ceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHh
Q psy4209 463 VEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSV 542 (856)
Q Consensus 463 v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~ 542 (856)
+ +||+||.+|+.+++||+.++..|++++|||+++|+|||.++|.++++||++ +|+|+|... +|+|+.|+..+.+.
T Consensus 570 v-tIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~~---vVTvEE~~~-GG~Gs~Va~~l~~~ 644 (701)
T PLN02225 570 V-ALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKF---LITVEEGCV-GGFGSHVAQFIALD 644 (701)
T ss_pred E-EEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcCe---EEEEcCCCC-CchHHHHHHHHHhc
Confidence 8 999999999999999988655569999999999999999999999999998 899988775 99999999999886
Q ss_pred hhh-CCCCeEEecCCCCCCCCCCc
Q psy4209 543 MEI-TTDPVCYIGRDPSSVPASGL 565 (856)
Q Consensus 543 ~~~-~~~~~~~vgr~~~~~pa~g~ 565 (856)
... ...+++.+|-|+.-.+ .|.
T Consensus 645 ~~~~~~~~v~~iGipd~F~~-~G~ 667 (701)
T PLN02225 645 GQLDGNIKWRPIVLPDGYIE-EAS 667 (701)
T ss_pred CCCcCCCcEEEEecCCcCcC-CCC
Confidence 210 0236899999987665 443
No 36
>KOG1182|consensus
Probab=99.95 E-value=1.5e-28 Score=257.23 Aligned_cols=159 Identities=11% Similarity=0.130 Sum_probs=150.5
Q ss_pred CcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCC
Q psy4209 10 HGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHN 89 (856)
Q Consensus 10 gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHs 89 (856)
-.+||+|-||+|+||||.++|..++.++-++.+|||..++|||||++|||.|+++|.+++-+..+|+|||++|||...||
T Consensus 245 ~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHS 324 (432)
T KOG1182|consen 245 CPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHS 324 (432)
T ss_pred CCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-CCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcCCcCCCC
Q psy4209 90 EGDDPS-FTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFE 168 (856)
Q Consensus 90 e~D~~~-yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~p~~~~~~~~~~~~~~ 168 (856)
++||.+ ||+.+|++.|...+.++.+|++++...|+|+++.-.++.++++++|-+|++.|++-+.|...+++.+||..+.
T Consensus 325 TSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P 404 (432)
T KOG1182|consen 325 TSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMP 404 (432)
T ss_pred CCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhh
Confidence 999976 9999999999876555599999999999999999999999999999999999999999998889999988653
No 37
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.95 E-value=1.1e-27 Score=261.14 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=130.8
Q ss_pred cEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCC
Q psy4209 11 GTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNE 90 (856)
Q Consensus 11 GvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse 90 (856)
++||||+||+||++|+...+++..+++++|++||+|+++|||+|+++|+.++++|++++|++++|+|||+.|||++|||+
T Consensus 156 Pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 156 PVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred CEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 69999999999999998877777889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4209 91 GDDP-SFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKS 148 (856)
Q Consensus 91 ~D~~-~yr~~~e~~~~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A 148 (856)
+||| .||+++|++.|+++||+ .+|+++|+++|++|++++++++++++++|++++++|
T Consensus 236 ~dd~~~Yr~~~e~~~~~~~dpi-~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 236 SDDPSRYRTKEEVEEWKKRDPI-LRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred CCCcccCCCHHHHHHHhcCCHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 7776 59999999999999998 999999999999999999999999999999999875
No 38
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.94 E-value=6.7e-25 Score=262.14 Aligned_cols=411 Identities=10% Similarity=0.042 Sum_probs=249.2
Q ss_pred ccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHHHcc-CCcEEEEEeeecC
Q psy4209 8 NTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHV-NADEPEVVVSIMKLLARYRQTF-KRDAFIDIIGYRR 85 (856)
Q Consensus 8 ~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~V-DG~D~~aV~~a~~~Av~~~R~g-~gPvlIe~~tYR~ 85 (856)
..+=+|+||+||+|+++++.+.+. ...+.++.++||.++++| ||+|++++++|.+.| |+. ++|++|++.|+|-
T Consensus 170 ~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a----~~~~~~P~~I~~~T~~g 244 (653)
T TIGR00232 170 KLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA----KASKDKPTLIEVTTTIG 244 (653)
T ss_pred CCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH----HhCCCCCEEEEEEeeec
Confidence 345589999999999999998886 567999999999999999 999999998777655 445 4899999999999
Q ss_pred CCCC--CCCCCC-C--CCHHHHHHHHhc----C-------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy4209 86 HGHN--EGDDPS-F--TQPLMYEKIKQT----K-------PLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSK 149 (856)
Q Consensus 86 ~GHs--e~D~~~-y--r~~~e~~~~~~~----d-------pi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~ 149 (856)
+|.+ ++.... . -++++++..++. . .+...|+..+.++|- ...+++.+.+++...+.-+.++
T Consensus 245 ~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~p~~~~ 321 (653)
T TIGR00232 245 FGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA---KAEQEWNELFAAYKKKYPELAA 321 (653)
T ss_pred ccCcccCCCCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHCHHHHH
Confidence 9986 332221 1 245555554331 1 111222222233331 1111111111111111000000
Q ss_pred hcCCCCCCCCCcCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q psy4209 150 EATRFDSAPWIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAE 229 (856)
Q Consensus 150 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE 229 (856)
+. ...+++ .++.+.. .. +| .|+. ..+.+..|. ++++
T Consensus 322 ~~---------~~~~~~-------------~~p~~~~----~~---~~--~~~~---~~~~~atR~----------~~g~ 357 (653)
T TIGR00232 322 EF---------TRRLSG-------------ELPADWD----KK---LP--EFKA---KLQALATRK----------YSQN 357 (653)
T ss_pred HH---------HHHHhc-------------cCchhhh----hh---hh--hhhc---cCcchHHHH----------HHHH
Confidence 00 000000 0000000 00 00 0000 000011111 1112
Q ss_pred HHHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhcc-CCC
Q psy4209 230 ALALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSL-VDP 308 (856)
Q Consensus 230 ~la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~-~g~ 308 (856)
+| ..|..+..+|++..-|+... +.-...-...+.++| +.|.+|.-|+|.+++|++.|+|+ .|.
T Consensus 358 ~L--~~la~~~p~iv~lsaDl~~s-------------~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~ 421 (653)
T TIGR00232 358 VL--NAIANVLPELLGGSADLAPS-------------NLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGGF 421 (653)
T ss_pred HH--HHHHhhCCCEEEEeCCcccc-------------CCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCCC
Confidence 22 23344567788888887541 111011111255666 57999999999999999999999 678
Q ss_pred CcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cC--CCCCccCCCCchhhhhhhcCCCCcchhhhhh
Q psy4209 309 NFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GI--EGQGPEHSSARPERFLELCSDSPRCVELDMK 385 (856)
Q Consensus 309 ~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~--~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~ 385 (856)
+|++---++|.||+ .++|-. + .++ ..|+++...| |+ ...||.| |+ +|- .+
T Consensus 422 ~p~~~tf~~F~~r~---~~~ir~--~--a~~---~lpV~~v~th~g~~~G~dG~TH-q~-ied---------------ia 474 (653)
T TIGR00232 422 KPYGGTFLMFVDYA---RPAIRL--A--ALM---KLPVIYVYTHDSIGVGEDGPTH-QP-IEQ---------------LA 474 (653)
T ss_pred eEEEEEhHHHHHHH---HHHHHH--H--Hhc---CCCEEEEEeCCccCCCCCCccc-CC-HHH---------------HH
Confidence 99985556666554 444522 1 111 3799999987 44 3458999 52 552 36
Q ss_pred hhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCC-ccccCCCcccc--cCCCC
Q psy4209 386 KQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTK-FRAYLPDTMAD--RNKDK 462 (856)
Q Consensus 386 ~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~-f~~~i~~a~~~--~~~~~ 462 (856)
++..+|||+|+.|+++.++..+++.++. +.+.|++|..++.-+.... ++. +....|. .+. +++.|
T Consensus 475 ~lr~iPn~~v~~PaD~~E~~~~~~~a~~-~~~gP~~irl~r~~~~~~~----------~~~~~~~~~G~-~vl~~~~g~d 542 (653)
T TIGR00232 475 SLRAIPNLSVWRPCDGNETAAAWKYALE-SQDGPTALILSRQNLPQLE----------ESSLEKVLKGG-YVLKDSKGPD 542 (653)
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHHh-cCCCcEEEEEcCCccCCCC----------cccccccCCCc-EEEEecCCCC
Confidence 7789999999999999999999999994 2478999998876543221 111 1122332 332 34677
Q ss_pred ceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHH---HHHHHhcCCCCceEEEEecCCCCCC
Q psy4209 463 VEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRA---FINDVSSYKNVKQVCWCQSEPENFG 530 (856)
Q Consensus 463 v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~---i~~sv~kt~~~~~~v~vqEe~~~~G 530 (856)
| +||+||.+|+.+|++++.+...|+++.||++.++.|||.+. +.+.++++.. +|.|+| +...|
T Consensus 543 v-~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~---vvtvEe-~~~~g 608 (653)
T TIGR00232 543 I-ILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVT---RLAVEA-GAADE 608 (653)
T ss_pred E-EEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCc---eEEEec-ccHhH
Confidence 8 99999999999999998876556999999999999997755 5555555554 666655 44444
No 39
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.93 E-value=3.1e-26 Score=229.95 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=140.6
Q ss_pred hhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCccee
Q psy4209 234 GTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVI 313 (856)
Q Consensus 234 ~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~ 313 (856)
..++.++.+|+++|+|++. .||+|..+++|.++|+..|++|++|+|..++|++.|+|+.|.+|++
T Consensus 8 ~~~~~~~~~vv~l~~D~~~--------------~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~- 72 (167)
T cd07036 8 DEEMERDPRVVVLGEDVGD--------------YGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIV- 72 (167)
T ss_pred HHHHhcCCCEEEECccccc--------------CCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEE-
Confidence 4567799999999999976 5899999999999998779999999999999999999999999998
Q ss_pred ecccchhhHHhHHHHHHHHHHhhhhhcCC--ccCeEEEcCccC-CCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCC
Q psy4209 314 WEAQFGDFANNAQAVFDQWISSARSKWNI--DSGLVLLLPHGI-EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFD 390 (856)
Q Consensus 314 wE~qfgDF~~~A~~~id~~~a~~~~kw~~--~~~lv~~lP~G~-~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~ 390 (856)
++||++|+..|.+||.+.++...++.++ ..|++++.++|+ .+.|++||+. .+ +++.++
T Consensus 73 -~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~-~~-----------------a~lr~i 133 (167)
T cd07036 73 -EIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQS-LE-----------------AWFAHI 133 (167)
T ss_pred -EeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhh-HH-----------------HHHhcC
Confidence 9999999999999999988877776666 588999999876 5679999883 34 555789
Q ss_pred CCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecc
Q psy4209 391 ANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPK 426 (856)
Q Consensus 391 ~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K 426 (856)
|||+|++||+|.|++++||+++.. ++|+||+|||
T Consensus 134 Pg~~V~~Psd~~e~~~~l~~~~~~--~~P~~~~e~k 167 (167)
T cd07036 134 PGLKVVAPSTPYDAKGLLKAAIRD--DDPVIFLEHK 167 (167)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHhC--CCcEEEEecC
Confidence 999999999999999999999954 7999999998
No 40
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.93 E-value=1.1e-25 Score=264.39 Aligned_cols=109 Identities=33% Similarity=0.643 Sum_probs=93.0
Q ss_pred HhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCccCCCceeecCCCccccCCCCCCc
Q psy4209 723 SEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSSLK 802 (856)
Q Consensus 723 ~~~~~v~~LI~AYR~~GHl~A~lDPL~~~~~~~~~~~~el~~~~~~~~~~~~~~lt~~DLd~~f~~~~~~~~g~~~~~~t 802 (856)
.+..+|++||+|||.||||.|++|||++..+ .+|+|+ .+ .+ +||..|||++|.++ .+| ++..|+
T Consensus 384 ~K~arv~elI~ayR~rGHLmAd~dPL~~~~r----~hpdLd---~~---~h--GLTlWDLdR~f~~g---gf~-g~~~m~ 447 (1228)
T PRK12270 384 DKNARVMELIHAYRVRGHLMADTDPLEYRQR----SHPDLD---VL---TH--GLTLWDLDREFPVG---GFG-GKERMK 447 (1228)
T ss_pred hHHHHHHHHHHHHHhccchhccCCccccccc----CCCCCC---cc---cc--CCCHHhcCceeecC---CcC-Cccccc
Confidence 4688999999999999999999999998643 457765 22 22 59999999999873 255 467799
Q ss_pred HHHHHHHHHHHcCCceeeecccCCCHHHHHHHHHHhcCCCCCCCC
Q psy4209 803 ISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNFYYSL 847 (856)
Q Consensus 803 L~eii~~L~~~YCG~IG~EfmHI~d~eer~WL~~riE~~~~~~~~ 847 (856)
||||+..||++||++||+|||||+|++||.|||+|||.+..+++.
T Consensus 448 LrdiL~~LRdsYcr~vg~EymhI~dpeqr~W~Q~rvE~~~~kp~~ 492 (1228)
T PRK12270 448 LRDILGVLRDSYCRTVGIEYMHIQDPEQRRWLQERVERPHEKPTR 492 (1228)
T ss_pred HHHHHHHHHHHHhhhheeeeeecCCHHHHHHHHHHhhCCCCCCCH
Confidence 999999999999999999999999999999999999987766553
No 41
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.93 E-value=9.2e-26 Score=228.87 Aligned_cols=176 Identities=22% Similarity=0.202 Sum_probs=145.1
Q ss_pred chhhHHHHHHHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHh
Q psy4209 222 SLDWAMAEALALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEY 301 (856)
Q Consensus 222 ~idw~~aE~la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~ 301 (856)
+++|..|...++..++.++.+|+++|+|++ ||+|..+.++...+|+.|++|+||+|.+++|++.
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~----------------~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~ 65 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLG----------------GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAA 65 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTH----------------HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcC----------------cchhhhhhhccccCCCceEEecCcchhhccceee
Confidence 578889999999999999999999999996 4778888999999999999999999999999999
Q ss_pred hhccCCC-CcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcch
Q psy4209 302 GYSLVDP-NFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCV 380 (856)
Q Consensus 302 G~a~~g~-~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~ 380 (856)
|+|+.|. ++++ |++|++|+..||.....++......++..++++++.|.|+.+.|+.|++...+
T Consensus 66 GlA~~G~~~~~~--~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~~d~------------- 130 (178)
T PF02779_consen 66 GLALAGGLRPPV--ESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSIEDE------------- 130 (178)
T ss_dssp HHHHHSSSEEEE--EEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSSSHH-------------
T ss_pred eeeeccccccee--EeeccccccccchhhhhhhhhhhhcccceecceeecCcccccccccccccccc-------------
Confidence 9999995 7776 99999999977333333333344555556779999999998889998774333
Q ss_pred hhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCC
Q psy4209 381 ELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHP 432 (856)
Q Consensus 381 ~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~ 432 (856)
+++.++|||+|++|+||+|++++||.++.++.++|++|++||.+|+|+
T Consensus 131 ----~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~~~~~~ 178 (178)
T PF02779_consen 131 ----AILRSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRGLYPHQ 178 (178)
T ss_dssp ----HHHHTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESSEES-T
T ss_pred ----cccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHHhCCCC
Confidence 666899999999999999999999999985569999999999999985
No 42
>PLN02790 transketolase
Probab=99.89 E-value=7.2e-21 Score=227.70 Aligned_cols=411 Identities=12% Similarity=0.080 Sum_probs=242.7
Q ss_pred CcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeC--CCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCC
Q psy4209 10 HGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNA--DEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHG 87 (856)
Q Consensus 10 gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG--~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~G 87 (856)
.-+|+||+||+|+++++...+. ...+.++.++||++++.||| +|++++++|.+.|.+. .++|++|++.|++-+|
T Consensus 167 ~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G 242 (654)
T PLN02790 167 GKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYG 242 (654)
T ss_pred CCEEEEEecCCccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCC
Confidence 4589999999999999988665 45678999999999999988 7999999999887642 6899999999999999
Q ss_pred CCC-CCCCCC--C--CHHHHHHHHhc-----CC------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4209 88 HNE-GDDPSF--T--QPLMYEKIKQT-----KP------LFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEA 151 (856)
Q Consensus 88 Hse-~D~~~y--r--~~~e~~~~~~~-----dp------i~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~ 151 (856)
-+. .+...+ . .+++++..++. +| +...|+. ..+.|- ...+++.+.+. .....
T Consensus 243 ~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~-~~~~~~-------~~~~~w~~~~~----~~~~~ 310 (654)
T PLN02790 243 SPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSK-HTKEGA-------ALEAEWNAKFA----EYKKK 310 (654)
T ss_pred CccccCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH-HHhhhh-------hhHHHHHHHHH----HHHhh
Confidence 863 333222 1 33444443321 11 1000111 011110 01111111111 11110
Q ss_pred CCCCCCCCCcCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHHH
Q psy4209 152 TRFDSAPWIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEAL 231 (856)
Q Consensus 152 ~~p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~l 231 (856)
.|.....+...++.-. | ... ...+..++ .. .+...-|.. +.+.|
T Consensus 311 -~~~~~~~~~~~~~~~~-~--------~~~--------~~~~~~~~-----~~---~~~~a~R~~----------~~~~l 354 (654)
T PLN02790 311 -YPEEAAELKSLISGEL-P--------SGW--------EKALPTFT-----PE---DPADATRNL----------SQKCL 354 (654)
T ss_pred -CHHHHHHHHHHhccCC-c--------hhh--------hhhhhhhc-----cc---CcchHHHHH----------HHHHH
Confidence 0000000000000000 0 000 00000000 00 000001111 11111
Q ss_pred HHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEe-ecCcccccccCCcEEEccCcchHHHHHHHhhhccC--CC
Q psy4209 232 ALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTY-TPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLV--DP 308 (856)
Q Consensus 232 a~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~-~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~--g~ 308 (856)
..+-...++++..-=|... ...++ .-+..+.+++-+.|.+|.-|+|.+.++++.|+|+. |.
T Consensus 355 --~~i~~~~p~iv~gsaDl~~--------------s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~ 418 (654)
T PLN02790 355 --NALAKVLPGLIGGSADLAS--------------SNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGL 418 (654)
T ss_pred --HHHHhhCCCeEEEECCCCc--------------ccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCc
Confidence 1222334555555566643 22222 22455666643679999999999999999999995 69
Q ss_pred CcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cC--CCCCccCCCCchhhhhhhcCCCCcchhhhhh
Q psy4209 309 NFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GI--EGQGPEHSSARPERFLELCSDSPRCVELDMK 385 (856)
Q Consensus 309 ~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~--~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~ 385 (856)
+|++--=++|.||.. .+|-. ++ ++ +.|+++..-| |. ..-||.|-. +|- .+
T Consensus 419 ~P~~~tf~~F~~~~~---~~ir~--~a--l~---~lpV~~v~thdg~~~G~DG~THq~--ied---------------la 471 (654)
T PLN02790 419 IPYCATFFVFTDYMR---AAMRL--SA--LS---EAGVIYVMTHDSIGLGEDGPTHQP--IEH---------------LA 471 (654)
T ss_pred EEEEEecHHHHHHHH---HHHHH--HH--hc---CCCeEEEEECCceeecCCCCCccc--HHH---------------HH
Confidence 999965556666544 44421 21 11 4788888876 33 345899988 552 36
Q ss_pred hhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCC-----
Q psy4209 386 KQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNK----- 460 (856)
Q Consensus 386 ~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~----- 460 (856)
.+..+|||.|+.|+++.++..+|+.++. +.+.|+.|.-++.=... +. ........+|. .+.+++
T Consensus 472 ~lR~iPnl~V~~PaD~~E~~~~l~~al~-~~~gP~~irl~R~~~~~------~~---~~~~~~~~~G~-~vl~~~~~~~~ 540 (654)
T PLN02790 472 SLRAMPNILMLRPADGNETAGAYKVAVT-NRKRPTVLALSRQKVPN------LP---GTSIEGVEKGG-YVISDNSSGNK 540 (654)
T ss_pred HhcCCCCcEEEeCCCHHHHHHHHHHHHH-cCCCCEEEEecCCCCCC------CC---CCcccccccCc-EEEEeCCCCCC
Confidence 7789999999999999999999999985 24789999877642211 00 00011123343 222332
Q ss_pred CCceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHH---HHH-hcCCCCceEEEEecCCCCCCc
Q psy4209 461 DKVEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFI---NDV-SSYKNVKQVCWCQSEPENFGF 531 (856)
Q Consensus 461 ~~v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~---~sv-~kt~~~~~~v~vqEe~~~~G~ 531 (856)
.++ +||+||.+|+.++++|+.+...|+++.||++.++.|||.+.+. +.+ ++++. +|.+ ||....|+
T Consensus 541 ~dv-~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~---vvti-E~~~~~G~ 610 (654)
T PLN02790 541 PDL-ILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTA---RVSV-EAGSTFGW 610 (654)
T ss_pred CCE-EEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccce---EEEe-cCccchhH
Confidence 567 9999999999999999987655699999999999999999865 556 45443 4555 55555664
No 43
>PTZ00089 transketolase; Provisional
Probab=99.89 E-value=7.7e-21 Score=227.67 Aligned_cols=413 Identities=13% Similarity=0.103 Sum_probs=250.8
Q ss_pred cCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEE-eCC-CHHHHHHHHHHHHHHHHccCCcEEEEEeeecCC
Q psy4209 9 THGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHV-NAD-EPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRH 86 (856)
Q Consensus 9 ~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~V-DG~-D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~ 86 (856)
-.-+|+||.||+|+++++.+.+. ...+.++.++||..++.| ||+ |++++++|.+.|.+.. ++|++|++.|+|-+
T Consensus 177 L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~---~~P~~I~~~T~kG~ 252 (661)
T PTZ00089 177 LEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSK---GKPKLIIVKTTIGY 252 (661)
T ss_pred CCCEEEEEECCCcccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcC---CCcEEEEEEeeecC
Confidence 34579999999999999988764 456889999999999999 999 9999999999887543 68999999999999
Q ss_pred CCCCCCCCC----CCCHHHHHHHHh---cCCH---------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4209 87 GHNEGDDPS----FTQPLMYEKIKQ---TKPL---------FEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKE 150 (856)
Q Consensus 87 GHse~D~~~----yr~~~e~~~~~~---~dpi---------~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~ 150 (856)
||.+.+... +.++++++..++ .||. ...++. ..+.+ ....+++.+.+.+. ++
T Consensus 253 G~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~-~~~~~-------~~~~~~w~~~~~~~----~~ 320 (661)
T PTZ00089 253 GSSKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQ-HVEKK-------KENYEAWKKRFAKY----TA 320 (661)
T ss_pred CCCcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhhh-------HHHHHHHHHHHHHH----HH
Confidence 998877654 456777777664 2221 011111 00111 01111222222111 11
Q ss_pred cCCCCCCCCCcCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q psy4209 151 ATRFDSAPWIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEA 230 (856)
Q Consensus 151 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~ 230 (856)
. .|.....+.....+- .+..++ ..+..+... . + -+..|.. ++++
T Consensus 321 ~-~~~~~~~l~~~~~~~---------~~~~~~-~~~~~~~~~----~-~----------~~a~R~~----------~g~~ 364 (661)
T PTZ00089 321 A-FPKEAQAIERRFKGE---------LPPGWE-KKLPKYTTN----D-K----------AIATRKA----------SENV 364 (661)
T ss_pred H-CHHHHHHHHHHhccC---------Cchhhh-hhhhhhccc----C-c----------chHHHHH----------HHHH
Confidence 0 000000000000000 000000 000000000 0 0 0001111 1111
Q ss_pred HHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhcc-CCCC
Q psy4209 231 LALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSL-VDPN 309 (856)
Q Consensus 231 la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~-~g~~ 309 (856)
| ..+......+...-=|+..-|+ .+. .-...+.++|...|.+|.-|+|.+.++++.|+|+ .|.+
T Consensus 365 L--~~la~~~~~~~~~saDl~~s~~-------~~~------~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~ 429 (661)
T PTZ00089 365 L--NPLFQILPELIGGSADLTPSNL-------TRP------KEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGGFI 429 (661)
T ss_pred H--HHHHhhCCCeEEEECCCCcccC-------cCC------cccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCCCe
Confidence 1 1222234445555556543111 000 0012344556327999999999999999999999 8899
Q ss_pred cceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc---cCCCCCccCCCCchhhhhhhcCCCCcchhhhhhh
Q psy4209 310 FLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH---GIEGQGPEHSSARPERFLELCSDSPRCVELDMKK 386 (856)
Q Consensus 310 ~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~---G~~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~ 386 (856)
|++ ..|.-|+.-|.+||-. ++ ++ +.|+++..=| |+..-||.|-. +|- .+.
T Consensus 430 P~~---~tf~~Fl~Ra~dqir~--~a--l~---~lpV~~v~thdg~~~g~DG~THq~--ied---------------ia~ 482 (661)
T PTZ00089 430 PFG---ATFLNFYGYALGAVRL--AA--LS---HHPVIYVATHDSIGLGEDGPTHQP--VET---------------LAL 482 (661)
T ss_pred EEE---EehHHHHHHHHHHHHH--HH--hc---CCCeEEEEeCCceecCCCCCCccc--HHH---------------HHH
Confidence 998 7888898888888733 22 11 4788888755 33445999988 552 366
Q ss_pred hcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCC---CCc
Q psy4209 387 QLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNK---DKV 463 (856)
Q Consensus 387 ~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~---~~v 463 (856)
+..+|||.|+.|+++.+++.+|+.++.. .+.|+.|.-++.=. + .+ +.....-.++.+.+.+++ .++
T Consensus 483 lR~iPn~~V~~PaD~~E~~~~l~~al~~-~~gP~~irl~R~~~--~-------~~-~~~~~~~~~~g~~vl~~~~~~~dv 551 (661)
T PTZ00089 483 LRATPNLLVIRPADGTETSGAYALALAN-AKTPTILCLSRQNT--P-------PL-PGSSIEGVLKGAYIVVDFTNSPQL 551 (661)
T ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHHc-CCCCEEEEecCCCC--C-------Cc-CCCccccccCceEEEeccCCCCCE
Confidence 7789999999999999999999999842 47899998775421 1 11 111111133444443443 567
Q ss_pred eEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHH--HhcCCCCceEEEEecCCCCCC
Q psy4209 464 EKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFIND--VSSYKNVKQVCWCQSEPENFG 530 (856)
Q Consensus 464 ~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~s--v~kt~~~~~~v~vqEe~~~~G 530 (856)
+||++|.+|..++++++.+.. |+++.||++.++.|||.+.+... |...+.. .+++=|+....|
T Consensus 552 -~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~--~~vtiE~~~~~g 616 (661)
T PTZ00089 552 -ILVASGSEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGV--PVLSVEAYVSFG 616 (661)
T ss_pred -EEEeeCHHHHHHHHHHHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCC--ceEeHHhhHHHH
Confidence 999999999999999998766 79999999999999999986643 3331221 234445565555
No 44
>PRK12753 transketolase; Reviewed
Probab=99.89 E-value=4.1e-20 Score=221.14 Aligned_cols=397 Identities=11% Similarity=0.067 Sum_probs=241.3
Q ss_pred ccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCC
Q psy4209 8 NTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFH-VNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRH 86 (856)
Q Consensus 8 ~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~-VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~ 86 (856)
..+=+|+||.||+|+++++..... ...+.++.++||.+++. |||+|++++++|.++|.+ ..++|++|++.|++=+
T Consensus 174 kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~ 249 (663)
T PRK12753 174 GLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGF 249 (663)
T ss_pred CCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecC
Confidence 344579999999999999988766 45789999999999995 999999999999999875 3578999999999999
Q ss_pred CCCCC-CCCCC----CCHHHHHHHHhc-C----C------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4209 87 GHNEG-DDPSF----TQPLMYEKIKQT-K----P------LFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKE 150 (856)
Q Consensus 87 GHse~-D~~~y----r~~~e~~~~~~~-d----p------i~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~ 150 (856)
|++.. +...+ -++++++..++. . | +...|+. .+.|- ...++.++.+ +..++
T Consensus 250 G~~~~e~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~~-------~~~~~w~~~~----~~~~~ 316 (663)
T PRK12753 250 GSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA--REKGE-------KAEQAWNEKF----AAYKK 316 (663)
T ss_pred CCCcccCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh--hhhch-------HHHHHHHHHH----HHHHH
Confidence 99732 22221 134455443321 0 0 0011110 11111 1111111111 11111
Q ss_pred cCCCCCCCCCcCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q psy4209 151 ATRFDSAPWIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEA 230 (856)
Q Consensus 151 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~ 230 (856)
. .|.....+...+.. ..+.... +.+......+..-+ +. +..|.. +.++
T Consensus 317 ~-~p~~~~~~~~~~~~---------~~p~~~~-~~~~~~~~~~~~~~-~~----------~a~r~~----------~g~~ 364 (663)
T PRK12753 317 A-YPELAAEFTRRMSG---------GLPKDWE-KKTQKYINELQANP-AK----------IATRKA----------SQNT 364 (663)
T ss_pred H-CHHHHHHHHHHhcC---------CCChhHH-HHHHHHHHHhhccc-cc----------cHHHHH----------HHHH
Confidence 0 01000000000000 0000000 00100000000001 00 001111 1222
Q ss_pred HHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhcc-CCCC
Q psy4209 231 LALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSL-VDPN 309 (856)
Q Consensus 231 la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~-~g~~ 309 (856)
+..|....++|....-|+..- +...+.-...+.++| +.|.+|.-|+|.+.+|++.|+|+ .|.+
T Consensus 365 --L~~l~~~~p~lv~~sADl~~S-------------~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~ 428 (663)
T PRK12753 365 --LEAYGPLLPELLGGSADLAPS-------------NLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFV 428 (663)
T ss_pred --HHHHHhhCCCeEEEccccccc-------------cCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCe
Confidence 234445677888888887541 111122223455566 56999999999999999999999 8899
Q ss_pred cceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cC--CCCCccCCCCchhhhhhhcCCCCcchhhhhhh
Q psy4209 310 FLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GI--EGQGPEHSSARPERFLELCSDSPRCVELDMKK 386 (856)
Q Consensus 310 ~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~--~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~ 386 (856)
|++ .-|+-|+.-|.+||.. ++ ++ +.|+++..-| |. ..-||.|-. +|- .+.
T Consensus 429 P~~---~tf~~F~~r~~~qir~--~a--~~---~l~V~~v~thdg~~~G~DG~THq~--ied---------------la~ 481 (663)
T PRK12753 429 PYT---ATFLMFVEYARNAARM--AA--LM---KARQIMVYTHDSIGLGEDGPTHQP--VEQ---------------LAS 481 (663)
T ss_pred EEE---EehHHHHHHHHHHHHH--HH--hc---CCCeEEEEeCCCcccCCCCccccc--HHH---------------HHH
Confidence 998 6788888888888864 21 22 3688877555 44 345899977 552 367
Q ss_pred hcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCC---CCc
Q psy4209 387 QLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNK---DKV 463 (856)
Q Consensus 387 ~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~---~~v 463 (856)
+..+|||.|+.|+++.+...+++.++.. .+.|+.+.-++.=... +.+- +...+....|. .+.+++ .||
T Consensus 482 lR~iPn~~v~~PaD~~E~~~~~~~al~~-~~gP~~irl~R~~~~~------~~~~-~~~~~~~~~G~-~vl~~~~~~~dv 552 (663)
T PRK12753 482 LRLTPNFSTWRPCDQVEAAVAWKLAIER-HNGPTALILSRQNLAQ------QERT-PEQVKNIARGG-YILKDSGGKPDL 552 (663)
T ss_pred HhcCCCCEEEccCCHHHHHHHHHHHHhc-CCCCEEEEecCCCCCC------CCCc-ccchhhccCCc-EEEeccCCCCCE
Confidence 7899999999999999999999999952 4789998776532111 0000 00001112232 332333 367
Q ss_pred eEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHH
Q psy4209 464 EKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAF 506 (856)
Q Consensus 464 ~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i 506 (856)
+||+||.+|+.+|++++++...|+++.||++.++.|||.+.+
T Consensus 553 -~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~ 594 (663)
T PRK12753 553 -ILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDE 594 (663)
T ss_pred -EEEEeCHHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHH
Confidence 999999999999999988765669999999999999999987
No 45
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3e-21 Score=203.39 Aligned_cols=261 Identities=16% Similarity=0.135 Sum_probs=216.5
Q ss_pred hhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceee
Q psy4209 235 TLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIW 314 (856)
Q Consensus 235 sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~w 314 (856)
.|-..+.+|++.=-|+.. ..-+..+.++| |.|++|--|+|+.++|.+.|+|+.|.+|++
T Consensus 19 ~l~~~~~diVvl~ADl~~------------------St~~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv-- 77 (312)
T COG3958 19 ELGRKNSDIVVLDADLSS------------------STKTGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFV-- 77 (312)
T ss_pred HHHhcCCCEEEEeccccc------------------ccchhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCcee--
Confidence 556678888888777754 23466778889 899999999999999999999999999998
Q ss_pred cccchhhHH-hHHHHHHHHHHhhhhhcCCccCeEEEcCc-cC-CC-CCccCCCCchhhhhhhcCCCCcchhhhhhhhcCC
Q psy4209 315 EAQFGDFAN-NAQAVFDQWISSARSKWNIDSGLVLLLPH-GI-EG-QGPEHSSARPERFLELCSDSPRCVELDMKKQLFD 390 (856)
Q Consensus 315 E~qfgDF~~-~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~-~g-~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~ 390 (856)
.-|+-|+. -|.+||.|-++-. +.++-+..-| |+ .| .|+.|-. +| +.+++..+
T Consensus 78 -~tfa~F~s~Ra~EQir~~iay~------~lnVKiv~t~~G~t~g~dG~sHq~--~E---------------DiaimR~l 133 (312)
T COG3958 78 -STFAAFLSRRAWEQIRNSIAYN------NLNVKIVATHAGVTYGEDGSSHQA--LE---------------DIAIMRGL 133 (312)
T ss_pred -echHHHHHHHHHHHHHHHhhhc------cCCeEEEEecCCcccCCCCccchh--HH---------------HHHHHhcC
Confidence 68999998 8999998866533 3566666666 44 34 7888877 34 35888999
Q ss_pred CCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcccccCCCCceEEEEcC
Q psy4209 391 ANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCS 470 (856)
Q Consensus 391 ~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~ 470 (856)
|||.|+.|+.+-+...++.... +.+.|+-+ .|.|.+... .+ ..+.|.--||++.+.++|+|+ |||..|
T Consensus 134 pn~~V~~P~D~v~~~~i~~~~~--~~~GP~Y~----Rl~R~~~p~-~~----~~~~~~F~iGka~vLrdG~D~-tiiA~G 201 (312)
T COG3958 134 PNMTVIAPADAVETRAILDQIA--DYKGPVYM----RLGRGKVPV-VV----DEGGYTFEIGKANVLRDGSDL-TIIATG 201 (312)
T ss_pred CCceEEccCcHHHHHHHHHHHH--hcCCCEEE----EecCCCCCc-ee----cCCCceEeccceeEeecCCce-EEEecC
Confidence 9999999999999998888777 56999876 455654321 11 234577789999988999999 999999
Q ss_pred CcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCe
Q psy4209 471 GKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPV 550 (856)
Q Consensus 471 g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~ 550 (856)
-||..+|+||+.+.+.|++++||++-+|.|+|.++|.+..+||++ +|.|+|-.-.+|.|+-|+..+.+... .|+
T Consensus 202 ~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~---IvT~EeHsi~GGlGsaVAEvlse~~p---~~~ 275 (312)
T COG3958 202 VMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARETGR---IVTAEEHSIIGGLGSAVAEVLSENGP---TPM 275 (312)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCc---EEEEecceeecchhHHHHHHHHhcCC---cce
Confidence 999999999998877779999999999999999999999999987 89998888899999999999888753 579
Q ss_pred EEecCCCC
Q psy4209 551 CYIGRDPS 558 (856)
Q Consensus 551 ~~vgr~~~ 558 (856)
+++|-|+.
T Consensus 276 ~riGvp~~ 283 (312)
T COG3958 276 RRIGVPDT 283 (312)
T ss_pred EEecCCch
Confidence 99998764
No 46
>PRK12754 transketolase; Reviewed
Probab=99.87 E-value=1.4e-19 Score=215.68 Aligned_cols=394 Identities=10% Similarity=0.067 Sum_probs=237.6
Q ss_pred ccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCC
Q psy4209 8 NTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFH-VNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRH 86 (856)
Q Consensus 8 ~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~-VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~ 86 (856)
.-+=+|+||.||+|+++++.+.+. ...+.++.++||.++++ |||+|++++++|.++|.+. .++|++|++.|++-+
T Consensus 174 kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~---~~~Pt~I~~~T~~g~ 249 (663)
T PRK12754 174 KLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIGF 249 (663)
T ss_pred CCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc---CCCCEEEEEEeeecc
Confidence 334579999999999999998886 46799999999999999 8999999999888877532 588999999999999
Q ss_pred CCCC-CCCCC--C--CCHHHHHHHHhc-C--------C--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4209 87 GHNE-GDDPS--F--TQPLMYEKIKQT-K--------P--LFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKE 150 (856)
Q Consensus 87 GHse-~D~~~--y--r~~~e~~~~~~~-d--------p--i~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~ 150 (856)
|.+. .+.+. . -.+++++..++. + | +...|++ .++| ++..++..+.++ ..++
T Consensus 250 G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~-------~~~~~~w~~~~~----~~~~ 316 (663)
T PRK12754 250 GSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA--KEAG-------QAKESAWNEKFA----AYAK 316 (663)
T ss_pred CccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH--hhhc-------hHHHHHHHHHHH----HHHH
Confidence 9862 33322 1 245666554432 1 1 1111111 1122 111111111111 1111
Q ss_pred cCCCCCCCCCcCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q psy4209 151 ATRFDSAPWIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEA 230 (856)
Q Consensus 151 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~ 230 (856)
. .|.....+...+... .++... +.+..+...+..-+ + -+.-|.. ++++
T Consensus 317 ~-~p~~~~~~~~~~~~~---------~p~~~~-~~~~~~~~~~~~~~-~----------~~atR~~----------~~~~ 364 (663)
T PRK12754 317 A-YPQEAAEFTRRMKGE---------MPADFD-AKAKEFIAKLQANP-A----------KIASRKA----------SQNA 364 (663)
T ss_pred H-CHHHHHHHHHHhcCC---------CchhHH-HHHHHHhhhhcccc-c----------chHHHHH----------HHHH
Confidence 0 010000000000000 000000 00111100000000 0 0111211 1111
Q ss_pred HHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhcc-CCCC
Q psy4209 231 LALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSL-VDPN 309 (856)
Q Consensus 231 la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~-~g~~ 309 (856)
...|-....+|....-|.... +...+.-+..+.++| +.|.+|.-|+|.+++|++.|+|+ .|.+
T Consensus 365 --L~~la~~~~~lv~~sADl~~s-------------~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~ 428 (663)
T PRK12754 365 --IEAFGPLLPEFLGGSADLAPS-------------NLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFL 428 (663)
T ss_pred --HHHHHhhCCCEEEEeCCcccc-------------cCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCe
Confidence 223445567777777787541 222222234455666 56999999999999999999999 6789
Q ss_pred cceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cC--CCCCccCCCCchhhhhhhcCCCCcchhhhhhh
Q psy4209 310 FLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GI--EGQGPEHSSARPERFLELCSDSPRCVELDMKK 386 (856)
Q Consensus 310 ~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~--~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~ 386 (856)
|++ .-|.-|+.-+.+||-+ + .++ +.|+++..-| |. ..-||.|-. +|- .+.
T Consensus 429 Pf~---~tf~~F~~r~~~qir~--~--a~~---~l~V~~v~th~gi~~G~DG~THq~--iEd---------------la~ 481 (663)
T PRK12754 429 PYT---STFLMFVEYARNAVRM--A--ALM---KQRQVMVYTHDSIGLGEDGPTHQP--VEQ---------------VAS 481 (663)
T ss_pred EEE---EeeHHHHHHHHHHHHH--H--HHc---CCCeEEEEECCccccCCCCCCccc--HHH---------------HHH
Confidence 998 4555666566677753 2 222 4687777766 33 344899987 662 367
Q ss_pred hcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCC-CccccCCCcccccCC---CC
Q psy4209 387 QLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDT-KFRAYLPDTMADRNK---DK 462 (856)
Q Consensus 387 ~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~-~f~~~i~~a~~~~~~---~~ 462 (856)
+..+|||.|+.|+++.+...+++.++.. .+.|+.+.-++.-+.... . +.. .+....|. .+.+++ .|
T Consensus 482 lR~iPn~~V~~PaD~~E~~~~~~~a~~~-~~gP~yirl~R~~~p~~~------~--~~~~~~~~~~G~-~vl~~~~~~~d 551 (663)
T PRK12754 482 LRVTPNMSTWRPCDQVESAVAWKYGVER-QDGPTALILSRQNLAQQE------R--TEEQLANIARGG-YVLKDCAGQPE 551 (663)
T ss_pred HhcCCCcEEecCCCHHHHHHHHHHHHhC-CCCCEEEEeCCCCCCCCC------C--ccchhhhcccCc-EEEEecCCCCC
Confidence 7899999999999999999999999953 368998766543221100 0 011 11122332 333333 26
Q ss_pred ceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHH
Q psy4209 463 VEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYR 504 (856)
Q Consensus 463 v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~ 504 (856)
| +||.||.+|+.+|++|+.+...|+++.||++-++.|||.+
T Consensus 552 v-~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q 592 (663)
T PRK12754 552 L-IFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQ 592 (663)
T ss_pred E-EEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCC
Confidence 7 9999999999999999887655699999999999999997
No 47
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.82 E-value=5.7e-20 Score=182.76 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=126.0
Q ss_pred hhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCCCccee
Q psy4209 234 GTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVI 313 (856)
Q Consensus 234 ~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~ 313 (856)
..++.++.+++++|+|++. . +.|+++.++| +.|++|+||+|.+++|.+.|+|+.|.+|++
T Consensus 8 ~~~~~~~~~~v~~~~Dl~~--------------~----~~~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~- 67 (156)
T cd07033 8 LELAKKDPRIVALSADLGG--------------S----TGLDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFV- 67 (156)
T ss_pred HHHHhhCCCEEEEECCCCC--------------C----CCcHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEE-
Confidence 4567789999999999975 2 3588999999 789999999999999999999999999999
Q ss_pred ecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccC-C--CCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCC
Q psy4209 314 WEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI-E--GQGPEHSSARPERFLELCSDSPRCVELDMKKQLFD 390 (856)
Q Consensus 314 wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~-~--g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~ 390 (856)
+.| .+|+..|.+||.+.++.. +.|++++.+||+ . +.|++|++- | +.+++.++
T Consensus 68 -~~~-~~f~~ra~dqi~~~~a~~------~~pv~~~~~~~g~~~~~~G~tH~~~--~---------------~~a~~~~i 122 (156)
T cd07033 68 -STF-SFFLQRAYDQIRHDVALQ------NLPVKFVGTHAGISVGEDGPTHQGI--E---------------DIALLRAI 122 (156)
T ss_pred -EEC-HHHHHHHHHHHHHHHhcc------CCCeEEEEECCcEecCCCCcccchH--H---------------HHHHhcCC
Confidence 999 999999999998766643 389999999864 3 589999772 2 23778999
Q ss_pred CCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecc
Q psy4209 391 ANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPK 426 (856)
Q Consensus 391 ~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K 426 (856)
||++|+.||+|.|++.+|+.++.. ++|++|..++
T Consensus 123 Pg~~v~~Ps~~~~~~~ll~~a~~~--~~P~~irl~~ 156 (156)
T cd07033 123 PNMTVLRPADANETAAALEAALEY--DGPVYIRLPR 156 (156)
T ss_pred CCCEEEecCCHHHHHHHHHHHHhC--CCCEEEEeeC
Confidence 999999999999999999999955 7899998764
No 48
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.78 E-value=1.8e-18 Score=173.69 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=123.9
Q ss_pred HHHHHHHHhhhhccC-CeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhc
Q psy4209 226 AMAEALALGTLLDSG-HHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYS 304 (856)
Q Consensus 226 ~~aE~la~~sll~eg-~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a 304 (856)
..+...++..++.++ ..|+++|+|++.+|+.+++. .|...+++ ++.|++|+||+|.+++|++.|+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~~~---------~~~~~~~~----~~~R~~~~gIaE~~~vg~a~GlA 69 (168)
T smart00861 3 RKAFGEALAELAERDPERVVVSGADVGGSTGLDRGG---------VFPDTKGL----GPGRVIDTGIAEQAMVGFAAGLA 69 (168)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCcCC---------ccCCCCCC----CCccEEEcCcCHHHHHHHHHHHH
Confidence 334455666777774 48999999999888777644 44444555 68899999999999999999999
Q ss_pred cCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccC-CCC-CccCCCCchhhhhhhcCCCCcchhh
Q psy4209 305 LVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI-EGQ-GPEHSSARPERFLELCSDSPRCVEL 382 (856)
Q Consensus 305 ~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~-~g~-Gp~HSsar~Er~lql~~e~~~~~~~ 382 (856)
+.|.+|++ +.++.+| ..|.+||.+.++. + ..++|++.+.|. .|. ||.|++...
T Consensus 70 ~~G~~pi~--~~~~~f~-~~a~~~~~~~~~~---~---~~~~v~~~~~g~~~g~~G~tH~~~~~---------------- 124 (168)
T smart00861 70 LAGLRPVV--AIFFTFF-DRAKDQIRSDGAM---G---RVPVVVRHDSGGGVGEDGPTHHSQED---------------- 124 (168)
T ss_pred HcCCCcEE--EeeHHHH-HHHHHHHHHhCcc---c---CCCEEEEecCccccCCCCccccchhH----------------
Confidence 99998888 7776654 4788888665432 2 689999997544 555 998877432
Q ss_pred hhhhhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCc-EEEEecc
Q psy4209 383 DMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRP-LVVLTPK 426 (856)
Q Consensus 383 ~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P-~i~~e~K 426 (856)
.+.+.++||++|+.|++|.|++++|+.++.+ .++| +|++++|
T Consensus 125 -~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~-~~~p~~i~~~~~ 167 (168)
T smart00861 125 -EALLRAIPGLKVVAPSDPAEAKGLLRAAIRR-DDGPPVIRLERK 167 (168)
T ss_pred -HHHHhcCCCcEEEecCCHHHHHHHHHHHHhC-CCCCEEEEecCC
Confidence 2667899999999999999999999999943 2457 7777665
No 49
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.72 E-value=7.8e-15 Score=177.46 Aligned_cols=277 Identities=14% Similarity=0.085 Sum_probs=183.2
Q ss_pred hhhcc---CCeEEEeeccCCCCcccc----cceeeeecCCCCEeecCc-----ccccccCCcEEEccCcchHHHHH--HH
Q psy4209 235 TLLDS---GHHIRLIGQDSKRGTFSH----RHAVYFDQATGNTYTPLH-----HIGAEAGKFHVYNSILNEMAALS--FE 300 (856)
Q Consensus 235 sll~e---g~~V~l~GeDv~~gtf~~----Rh~v~~d~~~gg~~~~~~-----~L~~~~g~~rV~nspLsE~~i~G--~~ 300 (856)
.|+.+ |.+|+.+--|+.+ ||.= |-.-+|.+ .|-.|.|.. ...++| +.|++|.-|+|++.+| .+
T Consensus 507 ~L~~~~~~~~riV~i~pD~a~-t~g~~~~f~~~gi~~~-~gq~y~~~d~~~~~~yke~~-PgRf~e~GIAEqnmv~~~vA 583 (891)
T PRK09405 507 ILLKDKEIGKRIVPIIPDEAR-TFGMEGLFRQIGIYNP-HGQLYTPVDRDQLMYYKESK-DGQILQEGINEAGAMASWIA 583 (891)
T ss_pred HHHhccccCCcEEEecccccc-ccCcchhhcccccccc-ccccccccccHHHHHHHHcC-CCcEEEechhhhHHHHHHHH
Confidence 45554 8889999999877 2221 22223333 344455543 223455 8999999999999999 99
Q ss_pred hhhccC----CCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccC---CCCCccCCCCchhhhhhhc
Q psy4209 301 YGYSLV----DPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI---EGQGPEHSSARPERFLELC 373 (856)
Q Consensus 301 ~G~a~~----g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~---~g~Gp~HSsar~Er~lql~ 373 (856)
.|+|++ |+.|++++=++|+ ..-|.+||-+.++.. ..+..|-.-+|. .|-|++|-+ .|..
T Consensus 584 AGlA~a~~G~g~iPF~~tya~F~--~~Ra~Dqir~a~~~~------~~~v~iggt~gg~tl~~eG~qHqd--g~s~---- 649 (891)
T PRK09405 584 AATSYSTHGEPMIPFYIYYSMFG--FQRIGDLAWAAGDQR------ARGFLLGGTAGRTTLNGEGLQHED--GHSH---- 649 (891)
T ss_pred HHHhhhhcCCCceEEEEehHHhh--hhhHHHHHHHHHHhc------CCCeEEEEECccccCCCCcccCCc--hhhH----
Confidence 997777 7799997777765 345666666544322 234444444444 366888877 3322
Q ss_pred CCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh---CCCCCcEEEEecccccCCCCCCCcccccccCCCcccc
Q psy4209 374 SDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL---LPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAY 450 (856)
Q Consensus 374 ~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~---~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~ 450 (856)
.++..+||+.|+.|+.+.+...+++.+++ ....+|..++.= +..+... .++ | +.|..-
T Consensus 650 -----------~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl---~ne~~~~---~~~-p-e~~~~~ 710 (891)
T PRK09405 650 -----------ILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITV---MNENYHQ---PAM-P-EGAEEG 710 (891)
T ss_pred -----------HHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEe---CCCCCCC---CCC-C-cccccc
Confidence 45667899999999999999999999875 223344544431 1111111 112 2 234556
Q ss_pred CCCc-ccccCCC------CceEEEEcCCcHHHHHHHHHHHcC-CCCcEEEEEecccCCCCHHHHHHHH---------hcC
Q psy4209 451 LPDT-MADRNKD------KVEKYILCSGKIYYDLIEARDAAN-LTEQIAIARLEQISPFPYRAFINDV---------SSY 513 (856)
Q Consensus 451 i~~a-~~~~~~~------~v~tvv~~~g~v~~~l~~a~~~~~-~~~~vevi~l~~L~P~~~~~i~~sv---------~kt 513 (856)
|++. ...++++ +| +||.||-+|+.+|+||+.+.. .|+++.||++-++.|||.+.|.... +++
T Consensus 711 igKg~y~Lr~g~~~~~~~dV-~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~ 789 (891)
T PRK09405 711 ILKGMYKLETAEGKKGKPKV-QLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRV 789 (891)
T ss_pred cceEEEEeccCCCCCCCCCE-EEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCccccccc
Confidence 6775 4334443 67 999999999999999998765 5799999999999999999998877 566
Q ss_pred CCCceEEEEecCCCCCCcH-------HHHHHHHHHhhhhCCCCeEEecCC
Q psy4209 514 KNVKQVCWCQSEPENFGFW-------KYVQARMCSVMEITTDPVCYIGRD 556 (856)
Q Consensus 514 ~~~~~~v~vqEe~~~~G~~-------~~i~~~i~~~~~~~~~~~~~vgr~ 556 (856)
+. |+..|++ ..|.. .-|+..|.+.+ ..+++.+|-+
T Consensus 790 ~~----V~t~ee~-~gG~~Vtv~D~~~aVae~la~~~---p~~~~~LGvD 831 (891)
T PRK09405 790 PY----VTQVLKG-AEGPVVAATDYMKLFAEQIRAFV---PGDYVVLGTD 831 (891)
T ss_pred ch----hhhhhcc-cCCcEEEecchHHHHHHHHHHhC---CCCEEEEecC
Confidence 65 3444455 66666 44555555443 3478888874
No 50
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.70 E-value=1.7e-14 Score=174.44 Aligned_cols=270 Identities=13% Similarity=0.059 Sum_probs=176.9
Q ss_pred CCeEEEeeccCCCCcc----cccceeeeecCCCCEeecCcc-----cccccCCcEEEccCcchHHHHH--HHhhhccC--
Q psy4209 240 GHHIRLIGQDSKRGTF----SHRHAVYFDQATGNTYTPLHH-----IGAEAGKFHVYNSILNEMAALS--FEYGYSLV-- 306 (856)
Q Consensus 240 g~~V~l~GeDv~~gtf----~~Rh~v~~d~~~gg~~~~~~~-----L~~~~g~~rV~nspLsE~~i~G--~~~G~a~~-- 306 (856)
|.+|+-+--|+.| || -=|-.-+|.+ .|-.|.|-.. ..+.+ +.|++|.-|+|++.+| .+.|+|++
T Consensus 510 ~~riV~i~pD~a~-t~gm~~~f~~~gi~~~-~gq~y~~~d~~~~~~y~e~~-p~R~ie~GIAEqnmv~~~iAAGlA~a~~ 586 (889)
T TIGR03186 510 GPRIVPIVADEAR-TFGMANLFRQVGIYSP-LGQRYEPEDLGSMLYYREDT-DGQILEEGISEAGAISSWIAAATSYSVH 586 (889)
T ss_pred cCCEEEeCCcccc-cCCchhhhccccccCc-ccccCCccchHHHHHHhhcC-CCcEEEechhhHHHHHHHHHHHHhhhhc
Confidence 6778888888876 33 1122223333 2444554431 12344 8999999999999999 89998887
Q ss_pred --CCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEE-EcCccC---CCCCccCCCCchhhhhhhcCCCCcch
Q psy4209 307 --DPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVL-LLPHGI---EGQGPEHSSARPERFLELCSDSPRCV 380 (856)
Q Consensus 307 --g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~-~lP~G~---~g~Gp~HSsar~Er~lql~~e~~~~~ 380 (856)
|+.|++++=++|+ ..-+.+||-+- +-. +.+.++ =.++|. .+-|++|-+ +|..
T Consensus 587 G~g~iPf~~tya~F~--~~Ra~Dqir~a---~~~----~a~v~lvG~~aG~tTlg~eG~tHq~--~eDi----------- 644 (889)
T TIGR03186 587 DLPMLPFYIYYSMFG--FQRIGDLIWAA---ADQ----RARGFLIGATSGKTTLGGEGLQHQD--GTSH----------- 644 (889)
T ss_pred CCCceEEEEehHHhH--hhhHHHHHHHH---hhc----CCCcEEEEECCCccCCCCCcccccc--hHhH-----------
Confidence 7799998777765 24555666432 211 234444 344565 255888887 4533
Q ss_pred hhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC---C-CCCcEEEEecccccCCCCCCCcccccccCCC---ccccCCC
Q psy4209 381 ELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL---P-FRRPLVVLTPKALLRHPQVRSTFEDLSLDTK---FRAYLPD 453 (856)
Q Consensus 381 ~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~---~-~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~---f~~~i~~ 453 (856)
+++..+|||.|+.|+.+.+...+++..+++ + .+.|+-+= |.|.+.... .+ +++. |..-+.+
T Consensus 645 ----al~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlR----l~r~~~~~p---~~-~~~~~~~~~~gi~k 712 (889)
T TIGR03186 645 ----LAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLT----VTNENYAQP---SL-PEDRLDAVRRGILK 712 (889)
T ss_pred ----HHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEE----eCCCCCCCC---Cc-CCCcccchhcchhh
Confidence 566788999999999999999999876641 1 25677653 333322111 12 2222 2222222
Q ss_pred c-cccc----CCCCceEEEEcCCcHHHHHHHHHHHcCC-CCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecC--
Q psy4209 454 T-MADR----NKDKVEKYILCSGKIYYDLIEARDAANL-TEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSE-- 525 (856)
Q Consensus 454 a-~~~~----~~~~v~tvv~~~g~v~~~l~~a~~~~~~-~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe-- 525 (856)
+ ...+ ++.+| +||.||-+|+.+|+||+.+... |+++.||++-++.|||.+.+. ++++++ ++-++|.
T Consensus 713 g~y~l~~~~~~g~dV-~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~---l~t~Eeh~~ 786 (889)
T TIGR03186 713 GMYPLDPAALAAARV-QLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQR---LGDAERPPS 786 (889)
T ss_pred eeeEeeccCCCCCCE-EEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCC---ccccccccc
Confidence 3 2222 35567 9999999999999999987654 699999999999999999998 789987 6666554
Q ss_pred -CCCCCcHH-------------HHHHHHHHhhhhCCCCeEEecC
Q psy4209 526 -PENFGFWK-------------YVQARMCSVMEITTDPVCYIGR 555 (856)
Q Consensus 526 -~~~~G~~~-------------~i~~~i~~~~~~~~~~~~~vgr 555 (856)
...+|.++ -|+..|.+.. ..+++.+|-
T Consensus 787 ~~v~ggLg~~~~p~va~~D~~~avae~i~~~~---p~~~~~LG~ 827 (889)
T TIGR03186 787 PHVAQALGATQGPVIAATDYVRAVPELIRAYV---PRRYVTLGT 827 (889)
T ss_pred ccHhhhhCCCCCCeeeecchHHHHHHHHHhhC---CCCEEEecc
Confidence 55677776 5555555443 236777776
No 51
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.64 E-value=6.1e-15 Score=168.86 Aligned_cols=246 Identities=15% Similarity=0.101 Sum_probs=198.9
Q ss_pred CcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcC-c
Q psy4209 274 LHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLP-H 352 (856)
Q Consensus 274 ~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP-~ 352 (856)
+..++++| |.|.+|.-|+|+..+-|+.|+|..|.+|+| +.+.=|..-|.||+..=++-- ..|+++-+= .
T Consensus 349 L~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvv---aIYSTFLQRAYDQliHDvaiq------nLPV~faIDRA 418 (627)
T COG1154 349 LVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVV---AIYSTFLQRAYDQLIHDVAIQ------NLPVTFAIDRA 418 (627)
T ss_pred hHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEE---EEecHHHHHHHHHHHHHHHhc------cCCeEEEEecC
Confidence 56677888 899999999999999999999999999998 789999999999887655432 468887775 4
Q ss_pred cCC-CCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCC
Q psy4209 353 GIE-GQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRH 431 (856)
Q Consensus 353 G~~-g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~ 431 (856)
|.. .-|+.|--.- +.+++..+|||.|++|++....+++|+.++.- +..|+.|=-|+.---.
T Consensus 419 GivG~DG~TH~G~f-----------------Dls~l~~iPnmvi~aP~de~el~~ml~ta~~~-~~gP~AiRyPrg~~~~ 480 (627)
T COG1154 419 GIVGADGPTHQGLF-----------------DLSFLRCIPNMVIMAPRDEEELRQMLYTALAQ-DDGPVAIRYPRGNGVG 480 (627)
T ss_pred cccCCCCCccccHH-----------------HHHHHhcCCCcEEecCCCHHHHHHHHHHHHhc-CCCCeEEEecCCCCCC
Confidence 664 5689998831 24667899999999999999999999999954 3469999777642111
Q ss_pred CCCCCcccccccCCCccccCCCcccccCCCCceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHh
Q psy4209 432 PQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVS 511 (856)
Q Consensus 432 ~~~~s~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~ 511 (856)
. .. +.+.-..++|+..+.+++.+| .||.+|.++..++.+|+++...|+++.|||.|.+.|+|.+.|.+..+
T Consensus 481 ~-------~~-~~~~~~~~~Gk~~i~~~G~~v-ail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~ 551 (627)
T COG1154 481 V-------IL-TPELEPLEIGKGELLKEGEKV-AILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAK 551 (627)
T ss_pred C-------Cc-ccccccccccceEEEecCCcE-EEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHh
Confidence 1 01 111245778988777888999 89999999999999999877667999999999999999999888887
Q ss_pred cCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCCCCCC
Q psy4209 512 SYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDPSSVP 561 (856)
Q Consensus 512 kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~~~~p 561 (856)
+... +|.++|....+|+|+.|...+.+.- ...+++..|-|+.-.+
T Consensus 552 ~h~~---~vtlEe~~~~GG~Gs~v~efl~~~~--~~~~v~~lglpd~fi~ 596 (627)
T COG1154 552 SHDL---VVTLEENVVDGGFGSAVLEFLAAHG--ILVPVLNLGLPDEFID 596 (627)
T ss_pred hcCe---EEEEecCcccccHHHHHHHHHHhcC--CCCceEEecCChHhhc
Confidence 7766 8889888889999999998887752 2357899999886544
No 52
>KOG0523|consensus
Probab=99.62 E-value=1.3e-13 Score=157.07 Aligned_cols=391 Identities=13% Similarity=0.068 Sum_probs=245.1
Q ss_pred CCCCCCccCcEEEEEEcCCceeccCCCCccccchhhh-hhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 2 AKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTC-VAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 2 s~l~~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sd-rAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
|.--.|..+=+|.|.-||+++++++.+.+...+ +.. |-.+||..+..|||.|+++...|...|. ..-++|+.|-+
T Consensus 163 s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~d-V~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~ 238 (632)
T KOG0523|consen 163 SLAGHLKLDNLVAIYDNNKISIDGATSLGFDED-VYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKA 238 (632)
T ss_pred hhhhhcccCCEEEEEccccccCCCCCccccccc-HHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeee
Confidence 344467788899999999999999988886554 555 8889999999999999988888888877 34568999999
Q ss_pred eeecCCCCC-CCCCCCC----CCHHHHHHHHhcC--CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy4209 81 IGYRRHGHN-EGDDPSF----TQPLMYEKIKQTK--PLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATR 153 (856)
Q Consensus 81 ~tYR~~GHs-e~D~~~y----r~~~e~~~~~~~d--pi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~~~A~~~~~ 153 (856)
.|+-=+|-. .+ .... -.++.++..++.. |. . .-+++++. + ..|.
T Consensus 239 ~t~~g~G~~~ig-~~~~Hg~pl~~~~~~~~k~~~~~P~-~--------~~~v~~~~--------~-----------~~p~ 289 (632)
T KOG0523|consen 239 TTFIGRGSPYIG-SESVHGAPLGEDDVERVKSIKGLPV-L--------IFVVPEKV--------K-----------LYPE 289 (632)
T ss_pred eeeeecCccccc-cccccCCcchhhHHHHHHhhcCCcc-e--------eEEecccc--------c-----------cCCC
Confidence 998544421 11 1000 0111111111111 11 0 00111110 0 2222
Q ss_pred CCCCC---CCcCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q psy4209 154 FDSAP---WIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEA 230 (856)
Q Consensus 154 p~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~idw~~aE~ 230 (856)
++.+. ..-++++... . ++| .|++-.+ ...-|.- +.|+
T Consensus 290 ~~~~~~~~~~~~i~~~~~------~-------------------~~p--~yk~~Dk---~~Atrk~----------~~~a 329 (632)
T KOG0523|consen 290 KPVEDARAISVRIPKIWE------K-------------------SLP--TYKVGDK---AVATRKA----------FGEA 329 (632)
T ss_pred cccccccccccCcCcccc------c-------------------cCC--ccccCCh---hhhHHHH----------HHHH
Confidence 21111 0011111000 0 011 1111110 0111111 1233
Q ss_pred HHHhhhhccCCeEEEeeccCCCCcccccceeeeecCCCCEeecCcccccccCCcEEEccCcchHHHHHHHhhhccCCC-C
Q psy4209 231 LALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDP-N 309 (856)
Q Consensus 231 la~~sll~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~-~ 309 (856)
|+ .|-.....|...--|..-+||+ .-+.++| +.|-++--|.|.+.+|++.|.|..|+ .
T Consensus 330 L~--~l~~~~~~vI~~~ad~~~st~t------------------d~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~ 388 (632)
T KOG0523|consen 330 LA--ALAEADPRVIGGSADLKNSTLT------------------DFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTI 388 (632)
T ss_pred HH--HHhhcCcCeEEEecccCCCchh------------------hhccccC-ccceEEEeeehhhhHHhhhchhcCCCcc
Confidence 22 2333344444444444443332 2233455 78999999999999999999999999 7
Q ss_pred cceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cC--CCCCccCCCCchhhhhhhcCCCCcchhhhhhh
Q psy4209 310 FLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GI--EGQGPEHSSARPERFLELCSDSPRCVELDMKK 386 (856)
Q Consensus 310 ~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~--~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~ 386 (856)
|.+ .-|..|..-|.+||.- +. . .+.+++...-| |. .--||.|-- +| +.+.
T Consensus 389 Pf~---~tf~~F~trA~dqvr~--~a---~--s~~~v~~v~th~~i~~GeDGPth~~--ie---------------dlA~ 441 (632)
T KOG0523|consen 389 PFC---GTFAAFFTRAFDQVRM--GA---L--SQANVIYVATHDSIGLGEDGPTHQP--IE---------------DLAM 441 (632)
T ss_pred chh---HHHHHHHHHhhhheee--hh---h--ccCCcEEEEEeccccccCCCccccc--HH---------------HHHH
Confidence 887 6888899888888742 11 1 25677777777 22 335788866 45 2478
Q ss_pred hcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEecccccCCCCCCCcccccccCCCccccCCCcc-cccCCC-Cce
Q psy4209 387 QLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTM-ADRNKD-KVE 464 (856)
Q Consensus 387 ~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~-~~~~~~-~v~ 464 (856)
|..+||+.|..|+.....+++...|+.. .+.|.|+-.+..-+-. +...+. .-+|++. +.++.+ ||
T Consensus 442 frsiPn~~v~~PaD~~et~~av~~Aa~~-~~~p~i~~~~r~~~~~---------~~~~~~--~~igkg~~vl~~~~~dV- 508 (632)
T KOG0523|consen 442 FRSIPNMIVFRPADGNETENAVATAANT-KGTPSIRTLSRQNLPI---------YNNTEI--EEIGKGKYVLQEVEPDV- 508 (632)
T ss_pred HHhCCCceEEecCchHHHHHHHHHHHhc-CCCeeEEEecCccccc---------cCCCch--hhhccccEEEecCCCCE-
Confidence 8999999999999999999999999964 4568887655432211 101111 2356666 334555 66
Q ss_pred EEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCC
Q psy4209 465 KYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENF 529 (856)
Q Consensus 465 tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~ 529 (856)
+||.+|..|+.||+||+.+...|+.+.|||++++.|||..+|..+-+.+.- .+.|-|++--.
T Consensus 509 ~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~---ri~v~ed~~~~ 570 (632)
T KOG0523|consen 509 ILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEY---RISVLEDHVPA 570 (632)
T ss_pred EEEeccHHHHHHHHHHHHHHhcCceEEEecccceeecchHHhhhhhcccce---eEEEccCCCCC
Confidence 999999999999999998765569999999999999999999998888776 56666665444
No 53
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.58 E-value=1.9e-12 Score=157.62 Aligned_cols=238 Identities=16% Similarity=0.126 Sum_probs=153.1
Q ss_pred hhhhcc---CCeEEEeeccCCCCcccc----cceeeeecCCCCEeec-----CcccccccCCcEEEccCcchHHHHH--H
Q psy4209 234 GTLLDS---GHHIRLIGQDSKRGTFSH----RHAVYFDQATGNTYTP-----LHHIGAEAGKFHVYNSILNEMAALS--F 299 (856)
Q Consensus 234 ~sll~e---g~~V~l~GeDv~~gtf~~----Rh~v~~d~~~gg~~~~-----~~~L~~~~g~~rV~nspLsE~~i~G--~ 299 (856)
..|+.+ +.+|+..--|+.+ ||.= |-.-++.+ .|..|.| +....++| +.|.++.-|+|++.+| .
T Consensus 514 ~~L~k~~~~~~~iV~i~aDla~-t~gm~~~f~~~~i~~~-~gq~y~~~d~~~~~~yke~~-pgR~ie~GIaEqnm~~~~~ 590 (896)
T PRK13012 514 GNLLKDKALGPRIVPIVADEAR-TFGMANLFRQVGIYSP-LGQLYEPEDAGSLLYYREAK-DGQILEEGITEAGAISSWI 590 (896)
T ss_pred HHHHhccccCCCEEEecccccc-ccCccccccccccccc-ccccccccchhHHhhhhhCC-CCcEEecchhhhhhhHHHH
Confidence 355655 8888888888875 3311 11122222 2444555 33334556 7899999999999988 7
Q ss_pred HhhhccC----CCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccC---CCCCccCCCCchhhhhhh
Q psy4209 300 EYGYSLV----DPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI---EGQGPEHSSARPERFLEL 372 (856)
Q Consensus 300 ~~G~a~~----g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~---~g~Gp~HSsar~Er~lql 372 (856)
+.|.|++ |+.|++++=++|+ +.-+.+||-+ .+-++ ..++.+...||. .+-|++|-. +|..
T Consensus 591 AAG~a~a~~G~g~iPf~~tfs~F~--~~R~~Dqir~---a~~~~---~~~vlig~T~gg~tlg~dG~THQ~--~esl--- 657 (896)
T PRK13012 591 AAATSYSVHGLPMLPFYIYYSMFG--FQRVGDLIWA---AADQR---ARGFLLGATAGRTTLGGEGLQHQD--GHSH--- 657 (896)
T ss_pred HHHhhHHhcCCCcEEEEEehHHHH--HHHHHHHHHH---HHhcc---cCCeEEEEeCcccccCCCCCCCcc--hHhH---
Confidence 7777666 5699987666554 2233344432 22221 356777778866 467899988 5543
Q ss_pred cCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC--C--CCCcEEEEecccccCCCCCCCcccccccCC-Cc
Q psy4209 373 CSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL--P--FRRPLVVLTPKALLRHPQVRSTFEDLSLDT-KF 447 (856)
Q Consensus 373 ~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~--~--~~~P~i~~e~K~L~r~~~~~s~~~e~~~~~-~f 447 (856)
+++..+||+.|+.|+.+.+...+++.++++ . .+.|..+- |.|.+.... .+ +++ .+
T Consensus 658 ------------al~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIr----L~r~~~~~p---~~-~~~~~~ 717 (896)
T PRK13012 658 ------------LLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLT----VMNENYAQP---AL-PEGAEE 717 (896)
T ss_pred ------------HHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEE----ecCCCCCCC---CC-Cccchh
Confidence 455678999999999999999999987743 1 24564432 222221100 11 111 12
Q ss_pred cccCCCcccc--cCCCCceEEEEcCCcHHHHHHHHHHHcCC-CCcEEEEEecccCCCCHHHHHH
Q psy4209 448 RAYLPDTMAD--RNKDKVEKYILCSGKIYYDLIEARDAANL-TEQIAIARLEQISPFPYRAFIN 508 (856)
Q Consensus 448 ~~~i~~a~~~--~~~~~v~tvv~~~g~v~~~l~~a~~~~~~-~~~vevi~l~~L~P~~~~~i~~ 508 (856)
.+..|.-.+. +++.+| +||.+|.+|+.+|+||+.+... |+++.||++-++.|||.+.|..
T Consensus 718 ~i~kG~y~l~~~~~g~dv-~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~ 780 (896)
T PRK13012 718 GILKGMYRLAAAAEAPRV-QLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA 780 (896)
T ss_pred ccccCcEEEeccCCCCCE-EEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH
Confidence 2223331111 234567 9999999999999999987655 6999999999999999999955
No 54
>PRK05261 putative phosphoketolase; Provisional
Probab=99.38 E-value=9.6e-11 Score=140.86 Aligned_cols=404 Identities=13% Similarity=0.078 Sum_probs=213.9
Q ss_pred CCCccCcEEEEEEcCCceeccCCCCcc-ccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHc-----------c
Q psy4209 5 EPYNTHGTIHIIINNQVGFTANPWETR-SSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQT-----------F 72 (856)
Q Consensus 5 ~~y~~gGvIfvveNNqyg~sT~~~~~~-s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~-----------g 72 (856)
..++.|-+|-|+-+|+|+++++...++ +...+.++.++||.+.+.|||+|+++|+.++++|++.+-+ +
T Consensus 188 ~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~ 267 (785)
T PRK05261 188 NPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREG 267 (785)
T ss_pred ccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456788899999999999999998765 4477999999999999999999999999998887775544 5
Q ss_pred ---CCcE--EEEEeeec-CCCCCCCCCCCCCCHHHHHHHHhcC----------CHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4209 73 ---KRDA--FIDIIGYR-RHGHNEGDDPSFTQPLMYEKIKQTK----------PLFEKYTQKLLQEKVITEDMVTLEVQA 136 (856)
Q Consensus 73 ---~gPv--lIe~~tYR-~~GHse~D~~~yr~~~e~~~~~~~d----------pi~~~~~~~Li~~G~~teeel~~i~~~ 136 (856)
.+|. +|.+.|-- +.|=.+-|.... ...|+.|- ..+..+.++|...+ .+|+=....+
T Consensus 268 ~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~-----eGs~raHqvPL~~~~~~~~~~~~L~~wl~sy~---p~elF~~~g~ 339 (785)
T PRK05261 268 GDTTRPRWPMIVLRTPKGWTGPKEVDGKPI-----EGSWRAHQVPLANVRDNPEHLDLLEDWLRSYR---PEELFDEDGR 339 (785)
T ss_pred CCCCCCCceEEEEECCccCCCCcccCCccc-----CCCchhhcCCCCCcccCHHHHHHHHHHhhcCC---hhhhcCCCCc
Confidence 5898 99998865 222221121100 00111110 01122333332211 1111111122
Q ss_pred HHHHHHH----HHHHHhhcCCCCCCCCCcCCcCCCCCccccccCCCCCCCHHHHHHHHHHhCCCCCCccc---hhHHHHH
Q psy4209 137 YQQKLES----EYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFK---LHRSLQR 209 (856)
Q Consensus 137 ~~~~v~~----a~~~A~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~P~~~f~---~h~~l~~ 209 (856)
+..++.+ .-....+.|.-.-. ..+.+..-|. ++..+- ..+..+-. --..+.+
T Consensus 340 l~~~~~~l~p~g~~r~~~~P~ang~----~~~~~l~lp~--------------~~~~~~---~~~~~g~~~~~atr~~g~ 398 (785)
T PRK05261 340 LKPELAALAPKGDRRMGANPHANGG----LLLRDLRLPD--------------FRDYAV---PVGKPGAVMAEATRVLGK 398 (785)
T ss_pred hhHHHHHhccCchhhhcCCchhcCC----cCccccCCCc--------------hHhhcc---cccCCCccccccHHHHHH
Confidence 2222221 11111111100000 0000000000 000000 00000000 0000111
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhhhccCCe-EEEeeccCCCCcccccceeeeecCCCCEeecCcccc----------
Q psy4209 210 VLNQRRKMIEENSLDWAMAEALALGTLLDSGHH-IRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIG---------- 278 (856)
Q Consensus 210 ~l~~r~~~~~~~~idw~~aE~la~~sll~eg~~-V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~---------- 278 (856)
. +..++...++ .|++|-|--. |.|- +++|.+|+.-+
T Consensus 399 ~----------------------l~~v~~~np~~frvf~pDe~~---SNrl--------~~~f~~t~r~~~~~~~~~d~~ 445 (785)
T PRK05261 399 Y----------------------LRDVIKLNPDNFRIFGPDETA---SNRL--------QAVFEVTDRQWMAEILPYDEH 445 (785)
T ss_pred H----------------------HHHHHHhCCCceEEEcCCcch---hhcc--------HhHHhhhccccccccCCcccc
Confidence 1 1223334444 7899998532 3332 23343332211
Q ss_pred cccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccchhhH---HhHHHHHHHHHH-hhhhhcCCc-cCeEEEcCcc
Q psy4209 279 AEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFA---NNAQAVFDQWIS-SARSKWNID-SGLVLLLPHG 353 (856)
Q Consensus 279 ~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~---~~A~~~id~~~a-~~~~kw~~~-~~lv~~lP~G 353 (856)
... ..||+. .|||.++.|+.-||++.|..++. .-|.-|+ ..+..|+--|+- +.+..|... ..|.+++-|.
T Consensus 446 ~~~-~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~---~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn~l~Ts~ 520 (785)
T PRK05261 446 LAP-DGRVME-VLSEHLCEGWLEGYLLTGRHGFF---SSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLTSH 520 (785)
T ss_pred cCC-CCCeee-eecHHHHHHHHHHHHhcCCCcce---ecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeEEeecc
Confidence 111 368999 99999999999999999999986 3444444 223333322222 234556553 4566666664
Q ss_pred CC---CCCccCCCC-chhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEEeccccc
Q psy4209 354 IE---GQGPEHSSA-RPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVLTPKALL 429 (856)
Q Consensus 354 ~~---g~Gp~HSsa-r~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~e~K~L~ 429 (856)
.. .-|+.|-.- -+|.++. ...++++|.-|...-......+.++.. -+.|.+|+..|.=+
T Consensus 521 ~~~qghNG~THQ~Pg~ie~l~~----------------~r~~~~rV~rPaDaNe~laa~~~al~s-~~~p~~IvlsRQ~l 583 (785)
T PRK05261 521 VWRQDHNGFSHQDPGFIDHVAN----------------KKPDVIRVYLPPDANTLLAVADHCLRS-RNYINVIVAGKQPR 583 (785)
T ss_pred eeecCCCCCCCCCchHHHHHHh----------------cCCCcceEEeCCCHHHHHHHHHHHHHh-CCCCEEEEEeCCCC
Confidence 42 457777552 1333221 133899999999988888888888864 47899998887533
Q ss_pred CCCCCCC-cccccccCCCccccCCCcccccCCCCceEEEEcCCcHHH-HHHHHHHHcCC--CCcEEEEEe
Q psy4209 430 RHPQVRS-TFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYY-DLIEARDAANL--TEQIAIARL 495 (856)
Q Consensus 430 r~~~~~s-~~~e~~~~~~f~~~i~~a~~~~~~~~v~tvv~~~g~v~~-~l~~a~~~~~~--~~~vevi~l 495 (856)
..-...+ ..+.+ ..|-|...-.+.+. ....|| +|+.+|..|.. +|+|+..+... |+.|.||-+
T Consensus 584 p~~~~~~~a~~~~-~kGayi~~~a~~~~-~~~pDv-vL~atGsev~leAlaAa~~L~~~~pgikvRVVSv 650 (785)
T PRK05261 584 PQWLSMDEARKHC-TKGLGIWDWASNDD-GEEPDV-VLACAGDVPTLETLAAADLLREHFPDLKIRVVNV 650 (785)
T ss_pred cccCChHHHHHhc-cCceEEEEeccCCC-CCCCCE-EEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 2110000 01122 34445432111100 012366 77777778888 88888776554 589999988
No 55
>KOG0451|consensus
Probab=99.32 E-value=4.6e-13 Score=149.74 Aligned_cols=98 Identities=23% Similarity=0.566 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCccCCCceeecCCCccccCCCCCCcHH
Q psy4209 725 AAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSSLKIS 804 (856)
Q Consensus 725 ~~~v~~LI~AYR~~GHl~A~lDPL~~~~~~~~~~~~el~~~~~~~~~~~~~~lt~~DLd~~f~~~~~~~~g~~~~~~tL~ 804 (856)
+.++.+||+|||.|||+.|++|||++... ++++..+.+..| +. +.. .+...+.+...+|.
T Consensus 53 ~a~~~rlv~afr~hGhk~A~vnPl~~l~~-----v~e~qeL~pa~y-G~------------~~t--~gLl~~~k~~~sl~ 112 (913)
T KOG0451|consen 53 QANVYRLVEAFRQHGHKLAAVNPLSILTS-----VQELQELSPAFY-GL------------QRT--DGLLSGPKVAHSLA 112 (913)
T ss_pred cccHHHHHHHHHHhcchhhccCchHhhhc-----cHHHHHhCHHhh-cc------------hhh--hhhhcCccccccHH
Confidence 55789999999999999999999996533 244433334423 21 011 11222234556999
Q ss_pred HHHHHHHHHcCCceeeecccCCCHHHHHHHHHHhcCCC
Q psy4209 805 DFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPN 842 (856)
Q Consensus 805 eii~~L~~~YCG~IG~EfmHI~d~eer~WL~~riE~~~ 842 (856)
|+.+.|+.||||++++|||||+|.|||+||.+++|+..
T Consensus 113 ~l~~~L~~IYCG~tsiEfs~v~~~eEr~W~a~nFE~l~ 150 (913)
T KOG0451|consen 113 QLEQLLKDIYCGSTSIEFSYVEDIEEREWLARNFETLD 150 (913)
T ss_pred HHHHHHHhheeCcchhhhhhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999754
No 56
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.17 E-value=4.1e-12 Score=121.50 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=90.5
Q ss_pred CCcccccCCCCceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCc
Q psy4209 452 PDTMADRNKDKVEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGF 531 (856)
Q Consensus 452 ~~a~~~~~~~~v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~ 531 (856)
|++.+.+++.++ +||+||.+++.++++++.+...|+++.||++++|.|||.+.|.++++++++ +++|+|..+.+|+
T Consensus 1 Gk~~~~~~g~di-~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~---vvvvee~~~~gg~ 76 (124)
T PF02780_consen 1 GKAEVLREGADI-TIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGR---VVVVEEHYKIGGL 76 (124)
T ss_dssp TEEEEEESSSSE-EEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHH---HHHSETCESEEEE
T ss_pred CEEEEEeCCCCE-EEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhcc---ccccccccccccH
Confidence 344544677888 999999999999999998655569999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHHHhhhh-CCCCeEEecCCCCCCC
Q psy4209 532 WKYVQARMCSVMEI-TTDPVCYIGRDPSSVP 561 (856)
Q Consensus 532 ~~~i~~~i~~~~~~-~~~~~~~vgr~~~~~p 561 (856)
++.|...+.+.... +..++.++|-|+.+.|
T Consensus 77 g~~i~~~l~~~~~~~~~~~~~~~g~~d~~~~ 107 (124)
T PF02780_consen 77 GSAIAEYLAENGFNDLDAPVKRLGVPDEFIP 107 (124)
T ss_dssp HSSHHHHHHHHTTTGEEEEEEEEEE-SSSHH
T ss_pred HHHHHHHHHHhCCccCCCCeEEEEECCCccc
Confidence 99999999996532 3467899999887665
No 57
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=3.1e-08 Score=115.09 Aligned_cols=418 Identities=15% Similarity=0.144 Sum_probs=239.0
Q ss_pred CCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 6 PYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 6 ~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.|..|=.|.+.-+|.+.|-.+.+... ++....|-++||=.++ .+||+|++++..|.++|.. ...+|+||+|.|-=
T Consensus 174 ~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiI 249 (663)
T COG0021 174 HLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTII 249 (663)
T ss_pred hcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeee
Confidence 46677889999999999999888887 4568999999999999 7899999999998888764 36799999999964
Q ss_pred CCC-CCCCCCCCC----CCHHHHHHHHhc---C------C--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHHH
Q psy4209 85 RHG-HNEGDDPSF----TQPLMYEKIKQT---K------P--LFEKYTQKLLQEKVITEDMVTLEVQAYQQK---LESEY 145 (856)
Q Consensus 85 ~~G-Hse~D~~~y----r~~~e~~~~~~~---d------p--i~~~~~~~Li~~G~~teeel~~i~~~~~~~---v~~a~ 145 (856)
=+| ++..+.... --++|++..++. + | +...++ ...++|.--+++++++-+.+++. ..+.+
T Consensus 250 G~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~-~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~ 328 (663)
T COG0021 250 GKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFR-AVEERGAKAEAAWNELFAAYKKKYPELAAEF 328 (663)
T ss_pred ecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhhChHHHHHH
Confidence 333 332333322 134566554432 2 1 111122 22334433344444333333332 33333
Q ss_pred HHHhhcCCCCCCCCCcCCcCCCCCcccc-ccCCCCC-CCHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhhhcch
Q psy4209 146 EKSKEATRFDSAPWIDVPWEGFEKDTTL-IQMPTTG-CDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSL 223 (856)
Q Consensus 146 ~~A~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~t~-~~~~~l~~~~~~~~~~P~~~f~~h~~l~~~l~~r~~~~~~~~i 223 (856)
+...+...|. .|......-.. .....|. .+.+.|..++..+.+
T Consensus 329 ~r~~~~~~p~-------~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~---------------------------- 373 (663)
T COG0021 329 ERRLNGELPA-------NWAAFLPKFEANGKSIATRKASGKALNALAKKLPE---------------------------- 373 (663)
T ss_pred HHHhcccCch-------hHHHhhhhhcccccccchHHHHHHHHHHHHhhCcc----------------------------
Confidence 3333333321 11111000000 0001110 011112222222111
Q ss_pred hhHHHHHHHHhhhhccCCeEEEeec--cCCCCcccccceeeeecCCCCEeecCcccc-cccCCcEEEccCcchHHHHHHH
Q psy4209 224 DWAMAEALALGTLLDSGHHIRLIGQ--DSKRGTFSHRHAVYFDQATGNTYTPLHHIG-AEAGKFHVYNSILNEMAALSFE 300 (856)
Q Consensus 224 dw~~aE~la~~sll~eg~~V~l~Ge--Dv~~gtf~~Rh~v~~d~~~gg~~~~~~~L~-~~~g~~rV~nspLsE~~i~G~~ 300 (856)
+.|- |+.. .+.-..+-...+. +.| ..|-+.--+-|.++.+..
T Consensus 374 ---------------------l~GGSADLa~-------------Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~Aim 418 (663)
T COG0021 374 ---------------------LIGGSADLAP-------------SNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIM 418 (663)
T ss_pred ---------------------ccccCccccc-------------CccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHH
Confidence 1121 2211 0011111112222 223 345666788999999999
Q ss_pred hhhccCCC-CcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc---cCCCCCccCCCCchhhhhhhcCCC
Q psy4209 301 YGYSLVDP-NFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH---GIEGQGPEHSSARPERFLELCSDS 376 (856)
Q Consensus 301 ~G~a~~g~-~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~---G~~g~Gp~HSsar~Er~lql~~e~ 376 (856)
.|+|+.|. +|..===+.|.||+-+| |. -+.-| ..|++..+-| |...-||+|-- +|. |
T Consensus 419 NGialhGg~~pyggTFlvFsdY~r~A---iR----laALm---~l~~~~V~THDSIgvGEDGPTHqP--iEq---L---- 479 (663)
T COG0021 419 NGIALHGGFIPYGGTFLVFSDYARPA---VR----LAALM---GLPVIYVFTHDSIGVGEDGPTHQP--VEQ---L---- 479 (663)
T ss_pred HhHHHhcCceeecceehhhHhhhhHH---HH----HHHhc---CCCeEEEEecCceecCCCCCCCCc--HHH---H----
Confidence 99999986 66642133444444443 31 11111 4688888888 44567899977 773 2
Q ss_pred CcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEE-ecccccCCCCCCCcccccccCCCccccCCCcc
Q psy4209 377 PRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVL-TPKALLRHPQVRSTFEDLSLDTKFRAYLPDTM 455 (856)
Q Consensus 377 ~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~-e~K~L~r~~~~~s~~~e~~~~~~f~~~i~~a~ 455 (856)
+.+..+||+.|.-|..+-+.....+.++.+ .+.|.+++ +-..|=-... +..+.+ ..+.|... ++.
T Consensus 480 --------a~LRaiPN~~V~RPaD~~Et~~aw~~Al~~-~~gPt~LiltRQnlp~l~~--t~~~~~-~kGaYvl~--~~~ 545 (663)
T COG0021 480 --------ASLRAIPNLSVIRPADANETAAAWKYALER-KDGPTALILTRQNLPVLER--TDLEGV-AKGAYVLK--DSG 545 (663)
T ss_pred --------HHhhccCCceeEecCChHHHHHHHHHHHhc-CCCCeEEEEecCCCCccCC--Cccccc-cCccEEEe--ecC
Confidence 566889999999999999999999999975 36666554 3333311111 112222 23444322 111
Q ss_pred cccCCCCceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHH--HHHHHhcCCCCceEEEEecCCCCCCcHH
Q psy4209 456 ADRNKDKVEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRA--FINDVSSYKNVKQVCWCQSEPENFGFWK 533 (856)
Q Consensus 456 ~~~~~~~v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~--i~~sv~kt~~~~~~v~vqEe~~~~G~~~ 533 (856)
.+..|+ +||..|.-|..++++++++...++.|.||.+=....|+.+. -.++|-.-.. .-.+.-|.-..+|.+.
T Consensus 546 --~~~pd~-iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v--~~rvaiEa~~~~~W~k 620 (663)
T COG0021 546 --GEDPDV-ILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAV--TARVAIEAGSALGWYK 620 (663)
T ss_pred --CCCCCE-EEEecccHHHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCc--cceEEEEeccccchhh
Confidence 113556 89999999999999999876555999999999888888743 3355543222 1245667878888776
Q ss_pred HHH
Q psy4209 534 YVQ 536 (856)
Q Consensus 534 ~i~ 536 (856)
++-
T Consensus 621 y~g 623 (663)
T COG0021 621 YVG 623 (663)
T ss_pred hcC
Confidence 663
No 58
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.93 E-value=3.1e-08 Score=111.30 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=131.3
Q ss_pred EEccCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcC-CccCeEEEcCccC-CCCC---cc
Q psy4209 286 VYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWN-IDSGLVLLLPHGI-EGQG---PE 360 (856)
Q Consensus 286 V~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~-~~~~lv~~lP~G~-~g~G---p~ 360 (856)
++. .=+|-+.++.++|+|++|-|.++ ++-|-....++..| +.+. ...|+||.+-... .+-| ++
T Consensus 51 ~vq-~E~E~aA~~~a~GAs~aG~Ra~t---aTSg~Gl~lm~E~l--------~~a~~~e~P~v~v~v~R~~p~~g~t~~e 118 (352)
T PRK07119 51 FVQ-AESEVAAINMVYGAAATGKRVMT---SSSSPGISLKQEGI--------SYLAGAELPCVIVNIMRGGPGLGNIQPS 118 (352)
T ss_pred EEe-eCcHHHHHHHHHHHHhhCCCEEe---ecCcchHHHHHHHH--------HHHHHccCCEEEEEeccCCCCCCCCcch
Confidence 444 78999999999999999999998 23222222222222 2222 2578888765422 1111 22
Q ss_pred CCCCchhhhhhh--cCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCCCCCCC
Q psy4209 361 HSSARPERFLEL--CSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRHPQVRS 436 (856)
Q Consensus 361 HSsar~Er~lql--~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~~~~~s 436 (856)
|++ +++++ +.+ +.-+|.|+.|+||.++|.+.+.|.+ .+.+-||+++..+.|-.... ..
T Consensus 119 q~D----~~~~~~~~gh-------------gd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~-~v 180 (352)
T PRK07119 119 QGD----YFQAVKGGGH-------------GDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMME-PV 180 (352)
T ss_pred hHH----HHHHHhcCCC-------------CCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCcee-ee
Confidence 332 22211 110 1346999999999999999998875 35789999999886532221 11
Q ss_pred cccc-----cccCCCcc-ccCCC---c-------------------------------ccc---cCCCCceEEEEcCCcH
Q psy4209 437 TFED-----LSLDTKFR-AYLPD---T-------------------------------MAD---RNKDKVEKYILCSGKI 473 (856)
Q Consensus 437 ~~~e-----~~~~~~f~-~~i~~---a-------------------------------~~~---~~~~~v~tvv~~~g~v 473 (856)
.+.+ ..+. .+. ++... . .+. -+..++ +||+||.++
T Consensus 181 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~-~iva~Gs~~ 258 (352)
T PRK07119 181 EFPPRKKRPLPPK-DWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAEL-VLVAYGTSA 258 (352)
T ss_pred cCCchhhcccCCC-CCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCE-EEEEcCccH
Confidence 1111 0011 111 11110 0 000 013445 899999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEec
Q psy4209 474 YYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQS 524 (856)
Q Consensus 474 ~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqE 524 (856)
..++++++.+...|+++.+|++++|+|||.+.|.+.++++++ ++++++
T Consensus 259 ~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~---VivvE~ 306 (352)
T PRK07119 259 RIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKG---FLSVEM 306 (352)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCE---EEEEeC
Confidence 999999987655569999999999999999999999999998 888876
No 59
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.83 E-value=1e-07 Score=114.25 Aligned_cols=229 Identities=14% Similarity=0.109 Sum_probs=146.9
Q ss_pred chHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhh
Q psy4209 292 NEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLE 371 (856)
Q Consensus 292 sE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lq 371 (856)
+|.+.+..++|+|++|-|.++.+=-+ =.|.+++.+-. ++ +-|...|+|+.+-.+ .||- |+ +.|
T Consensus 54 ~E~~a~~~~~GAs~aG~ra~t~ts~~---Gl~~~~e~l~~-~~----~~g~~~~iV~~~~~~---~gp~-~~-~~~---- 116 (595)
T TIGR03336 54 NEKVAVEVAAGAAWSGLRAFCTMKHV---GLNVAADPLMT-LA----YTGVKGGLVVVVADD---PSMH-SS-QNE---- 116 (595)
T ss_pred CHHHHHHHHHHHHhcCcceEEEccCC---chhhhHHHhhh-hh----hhcCcCceEEEEccC---CCCc-cc-hhh----
Confidence 89999999999999999999954422 23455555543 11 223368888887544 2332 22 111
Q ss_pred hcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCCCCCCCcccccccC---CC
Q psy4209 372 LCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRHPQVRSTFEDLSLD---TK 446 (856)
Q Consensus 372 l~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~~~~~s~~~e~~~~---~~ 446 (856)
++ -.+++...+|-|+.|+|+.++|.+.+.|.. .+++-||+++..+.|-.....+ .+.+..+. ..
T Consensus 117 ---q~-------d~~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v-~~~~~~~~~~~~~ 185 (595)
T TIGR03336 117 ---QD-------TRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDV-ELGEIPKEEVVKG 185 (595)
T ss_pred ---Hh-------HHHHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeE-ecCCCcccccccC
Confidence 00 012333357889999999999999999865 3589999999988665443321 12111000 01
Q ss_pred cccc------CCC---------------------c----ccccCCCCceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEe
Q psy4209 447 FRAY------LPD---------------------T----MADRNKDKVEKYILCSGKIYYDLIEARDAANLTEQIAIARL 495 (856)
Q Consensus 447 f~~~------i~~---------------------a----~~~~~~~~v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l 495 (856)
|..+ ++. . .+...+.++ .||+||.+++.++++.+++ | +++.|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di-~iv~~G~~~~~a~ea~~~~-G--i~~~v~~~ 261 (595)
T TIGR03336 186 FEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKI-GVIASGIAYNYVKEALERL-G--VDVSVLKI 261 (595)
T ss_pred CCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCE-EEEEcCHHHHHHHHHHHHc-C--CCeEEEEe
Confidence 1110 000 0 000123456 8999999999999977653 5 89999999
Q ss_pred cccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCCCCCC
Q psy4209 496 EQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDPSSVP 561 (856)
Q Consensus 496 ~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~~~~p 561 (856)
++++|||.+.|.+.++++.+ +++|+|.. .| .+.+...+.+.. ..+++..|.++.-.|
T Consensus 262 ~~i~Pld~~~i~~~~~~~~~---vivvEe~~--~~-~~~~~~~~~~~~---~~~v~~~G~~d~fi~ 318 (595)
T TIGR03336 262 GFTYPVPEGLVEEFLSGVEE---VLVVEELE--PV-VEEQVKALAGTA---GLNIKVHGKEDGFLP 318 (595)
T ss_pred CCCCCCCHHHHHHHHhcCCe---EEEEeCCc--cH-HHHHHHHHHHhc---CCCeEEecccCCccC
Confidence 99999999999999999988 88887643 34 333333333321 226899999986666
No 60
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.65 E-value=8.1e-07 Score=101.75 Aligned_cols=207 Identities=14% Similarity=0.123 Sum_probs=133.2
Q ss_pred chHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCC-C---ccCCCCchh
Q psy4209 292 NEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQ-G---PEHSSARPE 367 (856)
Q Consensus 292 sE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~-G---p~HSsar~E 367 (856)
||.+.++..+|+|++|-|..+ +.-|-=.+.++..|-. .-+...|+|+..-.+..+. - ++|+.
T Consensus 64 ~E~~A~~~~~GAs~aGaRa~T---aTS~~Gl~lm~E~l~~-------aa~~~~P~V~~~~~R~~~~~~~i~~d~~D---- 129 (407)
T PRK09622 64 SEHAAMSACVGAAAAGGRVAT---ATSSQGLALMVEVLYQ-------ASGMRLPIVLNLVNRALAAPLNVNGDHSD---- 129 (407)
T ss_pred cHHHHHHHHHHHHhhCcCEEe---ecCcchHHHHhhHHHH-------HHHhhCCEEEEEeccccCCCcCCCchHHH----
Confidence 999999999999999999998 2222222333333311 1123589998876644221 1 22322
Q ss_pred hhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC--CC--CCcEEEEecccccCCCC-CCCccc--c
Q psy4209 368 RFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL--PF--RRPLVVLTPKALLRHPQ-VRSTFE--D 440 (856)
Q Consensus 368 r~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~--~~--~~P~i~~e~K~L~r~~~-~~s~~~--e 440 (856)
..+....||.|+.|+|+.++|.+...|..- ++ +.||+++....+..|-. .+..++ +
T Consensus 130 -----------------~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~ 192 (407)
T PRK09622 130 -----------------MYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEV 192 (407)
T ss_pred -----------------HHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHH
Confidence 222345789999999999999999998753 34 89999999888754421 111000 0
Q ss_pred ccc-CCCcc-------------ccCCC-------------cc-------------------------cc---cCCCCceE
Q psy4209 441 LSL-DTKFR-------------AYLPD-------------TM-------------------------AD---RNKDKVEK 465 (856)
Q Consensus 441 ~~~-~~~f~-------------~~i~~-------------a~-------------------------~~---~~~~~v~t 465 (856)
+.+ .+.|. .+... .. +. -+..++ .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~-~ 271 (407)
T PRK09622 193 AYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEV-A 271 (407)
T ss_pred HhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCE-E
Confidence 000 00011 00000 00 00 012344 7
Q ss_pred EEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHH
Q psy4209 466 YILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWK 533 (856)
Q Consensus 466 vv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~ 533 (856)
||+||..+..+.++.+.+...|+++.||++++++|||.+.|.+.++++.+ +++++|...++|.+.
T Consensus 272 iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~---VvVvE~~~~~Gg~G~ 336 (407)
T PRK09622 272 IVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKA---LAILDRSSPAGAMGA 336 (407)
T ss_pred EEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCE---EEEEeCCCCCCCccH
Confidence 77888778778777776554459999999999999999999999988877 899988877777765
No 61
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.48 E-value=4.4e-06 Score=94.78 Aligned_cols=210 Identities=15% Similarity=0.136 Sum_probs=127.3
Q ss_pred EEEccCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCCCC-ccCC
Q psy4209 285 HVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEGQG-PEHS 362 (856)
Q Consensus 285 rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g~G-p~HS 362 (856)
.++..- ||-+.++.++|+|++|-|.++ =---+-|+. +-..+. ..-+...|+||..-. +.-+.| |.++
T Consensus 50 ~~vq~E-~E~aA~~~a~GAs~aG~Ra~T--aTSg~Gl~l-----m~E~~~---~a~~~e~P~Viv~~~R~gp~tg~p~~~ 118 (376)
T PRK08659 50 VFIQME-DEIASMAAVIGASWAGAKAMT--ATSGPGFSL-----MQENIG---YAAMTETPCVIVNVQRGGPSTGQPTKP 118 (376)
T ss_pred EEEEeC-chHHHHHHHHhHHhhCCCeEe--ecCCCcHHH-----HHHHHH---HHHHcCCCEEEEEeecCCCCCCCCCCc
Confidence 344444 999999999999999999999 111111211 111111 011115799988754 221223 3333
Q ss_pred C-CchhhhhhhcCCCCcchhhhhhhhc--CCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCCCCCCC-
Q psy4209 363 S-ARPERFLELCSDSPRCVELDMKKQL--FDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRHPQVRS- 436 (856)
Q Consensus 363 s-ar~Er~lql~~e~~~~~~~~~~~~~--~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~~~~~s- 436 (856)
+ +-+. ...+. +.-++.|+.|+|+.++|.+.+.+.. .+++-||+++....|-.....+.
T Consensus 119 ~q~D~~----------------~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~ 182 (376)
T PRK08659 119 AQGDMM----------------QARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVL 182 (376)
T ss_pred CcHHHH----------------HHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccC
Confidence 3 2111 01111 2357899999999999999998865 35789999999885432222111
Q ss_pred -ccccc------ccC------CCccc------c---CCCc-c--------------------------------------
Q psy4209 437 -TFEDL------SLD------TKFRA------Y---LPDT-M-------------------------------------- 455 (856)
Q Consensus 437 -~~~e~------~~~------~~f~~------~---i~~a-~-------------------------------------- 455 (856)
+.+++ .+. ..|.. | .+.. .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 262 (376)
T PRK08659 183 PEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDD 262 (376)
T ss_pred CChhhccccccccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhh
Confidence 00011 000 01110 0 0100 0
Q ss_pred ---cc---cCCCCceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecC
Q psy4209 456 ---AD---RNKDKVEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSE 525 (856)
Q Consensus 456 ---~~---~~~~~v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe 525 (856)
+. .++.++ .||+||.....++++.+.+...|+++.++++++|+|||.+.|.+.++++.+ +++|+|-
T Consensus 263 ~~~~e~~~~~~ad~-~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~---VivvEe~ 334 (376)
T PRK08659 263 IVLYEEYMLEDAEV-VVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKA---IVVPEMN 334 (376)
T ss_pred cCCceeecCCCCCE-EEEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCE---EEEEeCC
Confidence 00 023455 788888888888888887654458999999999999999999999998877 7888663
No 62
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.37 E-value=6.6e-07 Score=94.14 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=61.4
Q ss_pred CCCCccCcEEEEEEcCCceeccCCCCc-cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHc
Q psy4209 4 LEPYNTHGTIHIIINNQVGFTANPWET-RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQT 71 (856)
Q Consensus 4 l~~y~~gGvIfvveNNqyg~sT~~~~~-~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~ 71 (856)
+..++.|.+|-|+.||+|+++++...+ .+...+.+++++||++.+.|||+|+++|++++++|++++|.
T Consensus 107 ~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~ 175 (227)
T cd02011 107 LNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIE 175 (227)
T ss_pred hcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999866 45678999999999999999999999999999999998774
No 63
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.30 E-value=2.5e-05 Score=88.96 Aligned_cols=215 Identities=11% Similarity=0.087 Sum_probs=128.7
Q ss_pred cCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCCCCcc---CCCC
Q psy4209 289 SILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEGQGPE---HSSA 364 (856)
Q Consensus 289 spLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g~Gp~---HSsa 364 (856)
..=||.+.++.++|+|++|-|.++ +.-|-=.+.++..|-. .+ +...|+|+-.-. +..+.++. |+.
T Consensus 54 ~~E~E~aA~~~aiGAs~aGaRa~T---aTSg~Gl~lm~E~l~~---aa----~~~lPiVi~~~~R~~p~~~~~~~~q~D- 122 (390)
T PRK08366 54 PVESEHSAMAACIGASAAGARAFT---ATSAQGLALMHEMLHW---AA----GARLPIVMVDVNRAMAPPWSVWDDQTD- 122 (390)
T ss_pred EeCCHHHHHHHHHHHHhhCCCeEe---eeCcccHHHHhhHHHH---HH----hcCCCEEEEEeccCCCCCCCCcchhhH-
Confidence 345899999999999999999998 2222222233333311 11 115788876632 11122233 333
Q ss_pred chhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCCCCCCCcccc--
Q psy4209 365 RPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRHPQVRSTFED-- 440 (856)
Q Consensus 365 r~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~~~~~s~~~e-- 440 (856)
.++....||.++.|+|+.++|.+.+.+.. .+++-||+++..+.++-|......+-+
T Consensus 123 --------------------~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~ 182 (390)
T PRK08366 123 --------------------SLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQE 182 (390)
T ss_pred --------------------HHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHH
Confidence 23345579999999999999999998864 367999999998876655432211100
Q ss_pred ----cccC--CCc-----ccc-----CC-------------Cc---------------------c-c-cc-----CCCCc
Q psy4209 441 ----LSLD--TKF-----RAY-----LP-------------DT---------------------M-A-DR-----NKDKV 463 (856)
Q Consensus 441 ----~~~~--~~f-----~~~-----i~-------------~a---------------------~-~-~~-----~~~~v 463 (856)
+.+. ..| ..| .+ +. . . .. +..++
T Consensus 183 ~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~ 262 (390)
T PRK08366 183 LVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADF 262 (390)
T ss_pred HHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCE
Confidence 0000 000 011 11 00 0 0 00 11223
Q ss_pred eEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHH
Q psy4209 464 EKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARM 539 (856)
Q Consensus 464 ~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i 539 (856)
-||+||.....+.++.+.+...|.++-++++++++|||.+.|.+.+++..+ +++|++ ...+|..+-+...+
T Consensus 263 -~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~---ViVvE~-n~~~Gq~g~l~~ev 333 (390)
T PRK08366 263 -VFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKG---IAVLDR-NFSFGQEGILFTEA 333 (390)
T ss_pred -EEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCE---EEEEeC-CCCCCcccHHHHHH
Confidence 456666666566666665544458999999999999999999999987776 777754 44445444343333
No 64
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.30 E-value=1.4e-05 Score=90.64 Aligned_cols=204 Identities=12% Similarity=0.129 Sum_probs=121.1
Q ss_pred chHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcC-CccCeEEEcCc--cCCCCCccCCC-Cchh
Q psy4209 292 NEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWN-IDSGLVLLLPH--GIEGQGPEHSS-ARPE 367 (856)
Q Consensus 292 sE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~-~~~~lv~~lP~--G~~g~Gp~HSs-ar~E 367 (856)
+|-+.++.++|+|++|-|.++ =.--+-|+. +-..+ +... ...|+|+..-. |-.+.-|..+. +-+
T Consensus 55 ~E~aA~~~a~GAs~aG~Ra~t--aTSg~G~~l-----m~E~~----~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~- 122 (375)
T PRK09627 55 DEISGISVALGASMSGVKSMT--ASSGPGISL-----KAEQI----GLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDV- 122 (375)
T ss_pred CHHHHHHHHHHHHhhCCCEEe--ecCCchHHH-----HhhHH----HHHHhccCCEEEEEeccCCCcCCCCCccchHHH-
Confidence 999999999999999999998 222222322 11111 1222 25799997765 43333354332 111
Q ss_pred hhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCCCCCCCcc---cc--
Q psy4209 368 RFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRHPQVRSTF---ED-- 440 (856)
Q Consensus 368 r~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~~~~~s~~---~e-- 440 (856)
.. +.. ... +.-++.|+.|+|+.++|.+...+.. .+++-|||++..+.| -|......+ ++
T Consensus 123 -~~--~~~---------~~h-gd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~l-sh~~~~v~~~~~~~~~ 188 (375)
T PRK09627 123 -NQ--AKN---------PTH-GDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETV-GHMYGKAVIPDLEEVQ 188 (375)
T ss_pred -HH--Hhc---------CCC-CCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHH-hCCeeeccCCChHhcc
Confidence 11 110 111 2246779999999999999998864 368999999998855 332211111 11
Q ss_pred --------cccC-CCcccc-CC-----------C--------------------cc----------------------cc
Q psy4209 441 --------LSLD-TKFRAY-LP-----------D--------------------TM----------------------AD 457 (856)
Q Consensus 441 --------~~~~-~~f~~~-i~-----------~--------------------a~----------------------~~ 457 (856)
+.++ ..|.+. +. . +. ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e 268 (375)
T PRK09627 189 KMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYE 268 (375)
T ss_pred ccccccccccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCce
Confidence 1000 112111 10 0 00 00
Q ss_pred --c-CCCCceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecC
Q psy4209 458 --R-NKDKVEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSE 525 (856)
Q Consensus 458 --~-~~~~v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe 525 (856)
. +..++ -||+||....++.++.+.+...|++|-++++++++|||.+.|.+.+++..+ +++|++.
T Consensus 269 ~y~~~dAd~-~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~---viVvE~n 335 (375)
T PRK09627 269 EYMLDDAEI-LIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEK---ILVIELN 335 (375)
T ss_pred eeCCCCCCE-EEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCE---EEEEcCC
Confidence 0 11233 455666666566666555544458999999999999999999999998877 7888653
No 65
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=98.20 E-value=3.2e-06 Score=90.98 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=70.4
Q ss_pred CccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCC
Q psy4209 7 YNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRH 86 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~ 86 (856)
|...-+++|+.||+|+++++.........+.++++++|.+++.|||+|++++..|.++|.+.. ++|++|++.|.+-.
T Consensus 154 ~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~---~~P~~I~~~t~kg~ 230 (255)
T cd02012 154 YKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSK---GKPTLIIAKTIKGK 230 (255)
T ss_pred cCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcC---CCCEEEEEEeeccc
Confidence 455668999999999999887666566678999999999999999999999999999887532 78999999999999
Q ss_pred CCCC
Q psy4209 87 GHNE 90 (856)
Q Consensus 87 GHse 90 (856)
||+.
T Consensus 231 g~~~ 234 (255)
T cd02012 231 GVPF 234 (255)
T ss_pred ccCc
Confidence 9983
No 66
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.20 E-value=4.9e-05 Score=90.69 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=128.9
Q ss_pred CcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCC--CCCccCCCCch
Q psy4209 290 ILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIE--GQGPEHSSARP 366 (856)
Q Consensus 290 pLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~--g~Gp~HSsar~ 366 (856)
.=||.+.++.++|+|++|-|.++ = +-|-=.+.++..| . ++.+ ...|+||..-. +.- |.-.+++|+
T Consensus 243 ~E~E~aA~~~a~GAs~aG~Ra~t--a-TSg~Gl~lm~E~l-~-~a~~-----~~~P~Vi~~~~R~gpstg~~t~~eq~-- 310 (562)
T TIGR03710 243 AEDEIAAINMAIGASYAGARAMT--A-TSGPGFALMTEAL-G-LAGM-----TETPLVIVDVQRGGPSTGLPTKTEQS-- 310 (562)
T ss_pred eccHHHHHHHHHhHHhcCCceee--c-CCCCChhHhHHHH-h-HHHh-----ccCCEEEEEcccCCCCCCCCCCccHH--
Confidence 44999999999999999999998 2 2222223344444 1 1111 24799988754 222 222233332
Q ss_pred hhhhhhcCCCCcchhhhhhhhc--CCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCCCCCCCc--ccc
Q psy4209 367 ERFLELCSDSPRCVELDMKKQL--FDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRHPQVRST--FED 440 (856)
Q Consensus 367 Er~lql~~e~~~~~~~~~~~~~--~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~~~~~s~--~~e 440 (856)
++++. .+. +.-+|.|+.|+|+.++|.+...+.. .+++-|||++..+.|-.+...... .++
T Consensus 311 D~~~~--------------~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~ 376 (562)
T TIGR03710 311 DLLFA--------------LYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDD 376 (562)
T ss_pred HHHHH--------------hcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhh
Confidence 22221 111 2457999999999999999988864 368999999998887544322110 011
Q ss_pred cc---------cCCCcc------------ccCCCc---------------------c-----c-------c---c-----
Q psy4209 441 LS---------LDTKFR------------AYLPDT---------------------M-----A-------D---R----- 458 (856)
Q Consensus 441 ~~---------~~~~f~------------~~i~~a---------------------~-----~-------~---~----- 458 (856)
+. +.+.|. ...|.+ . . . +
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 456 (562)
T TIGR03710 377 LPIIDRGKVLEPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEP 456 (562)
T ss_pred cccccccccccCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 10 001111 111100 0 0 0 0
Q ss_pred -----CCCCceEEEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHH
Q psy4209 459 -----NKDKVEKYILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWK 533 (856)
Q Consensus 459 -----~~~~v~tvv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~ 533 (856)
+..++ -||+||.......++.+.+...|.++-++++++++|||.+.|.+.+++..+ +++|++ ..++=+..
T Consensus 457 e~~~~~da~~-~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~---v~VvE~-n~~Gql~~ 531 (562)
T TIGR03710 457 EVYGDEDADV-LVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKK---VIVVEQ-NATGQLAK 531 (562)
T ss_pred eeecCCCCCE-EEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCE---EEEEcc-ChhhhHHH
Confidence 01223 455666665566666665554558999999999999999999999988876 777754 43322233
Q ss_pred HHHHHH
Q psy4209 534 YVQARM 539 (856)
Q Consensus 534 ~i~~~i 539 (856)
+|+..+
T Consensus 532 ~v~~~~ 537 (562)
T TIGR03710 532 LLRAET 537 (562)
T ss_pred HHHHHh
Confidence 444333
No 67
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=98.06 E-value=9.7e-06 Score=83.96 Aligned_cols=69 Identities=14% Similarity=0.261 Sum_probs=55.9
Q ss_pred cCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCC
Q psy4209 9 THGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFH-VNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHG 87 (856)
Q Consensus 9 ~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~-VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~G 87 (856)
-..+|+||+||+|+++++.. ...++++++|..... |||+|++++.+|+++|. +.++|++|++.|+.=.|
T Consensus 125 ~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~----~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 125 KSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195)
T ss_pred CCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH----hCCCCEEEEEEEecccC
Confidence 45789999999999998765 255667778877775 99999999999887764 46899999999986443
No 68
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.98 E-value=0.0002 Score=81.81 Aligned_cols=210 Identities=13% Similarity=0.094 Sum_probs=121.3
Q ss_pred CcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc--cCCCCC--ccCCCCc
Q psy4209 290 ILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH--GIEGQG--PEHSSAR 365 (856)
Q Consensus 290 pLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~--G~~g~G--p~HSsar 365 (856)
.=||.+.++..+|+|++|-|..+ +.-|-=.+.++..|- .--+...|+||.+.. +..+.+ ++||+.
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~T---aTS~~Gl~lm~E~l~-------~aag~~lP~V~vv~~R~~~~p~~i~~d~~D~- 124 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFT---ATASQGLALMHEVLF-------IAAGMRLPIVMAIGNRALSAPINIWNDWQDT- 124 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEe---eeccchHHHHhhHHH-------HHHHccCCEEEEECCCCCCCCCCcCcchHHH-
Confidence 34899999999999999999998 222211222222221 111235898888732 111112 256662
Q ss_pred hhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC----CCCCcEEEEecccccCCCCCCCcc---
Q psy4209 366 PERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL----PFRRPLVVLTPKALLRHPQVRSTF--- 438 (856)
Q Consensus 366 ~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~----~~~~P~i~~e~K~L~r~~~~~s~~--- 438 (856)
| ....-||.+++|+|+.++|.+...|..- +..-||+++...-+..|......+
T Consensus 125 -----~---------------~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~ 184 (394)
T PRK08367 125 -----I---------------SQRDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQ 184 (394)
T ss_pred -----H---------------hccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCH
Confidence 1 1234789999999999999999888652 234799999998655542211111
Q ss_pred c---ccccCCCccc---------c-----CCC--cc-----------------c----------------ccC---CCCc
Q psy4209 439 E---DLSLDTKFRA---------Y-----LPD--TM-----------------A----------------DRN---KDKV 463 (856)
Q Consensus 439 ~---e~~~~~~f~~---------~-----i~~--a~-----------------~----------------~~~---~~~v 463 (856)
+ ++.| .|.+ | .+. .. + ..+ ..|.
T Consensus 185 ~~~~~~~~--~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDA 262 (394)
T PRK08367 185 EVVDEFLG--EYEPKHAYLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDA 262 (394)
T ss_pred HHHhhhcC--cccccccccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCC
Confidence 0 1100 1100 1 000 00 0 000 0233
Q ss_pred eEEEEcCCcHH-HHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHH
Q psy4209 464 EKYILCSGKIY-YDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQ 536 (856)
Q Consensus 464 ~tvv~~~g~v~-~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~ 536 (856)
+.+|.+.|..+ .+.++.+.+...|.+|-+|+++.++|||.+.|.+.+++..+ +++++- ..+.|.++-+.
T Consensus 263 e~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~---ViVvE~-n~s~g~~g~l~ 332 (394)
T PRK08367 263 EIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKV---LAFLEK-NISFGLGGAVF 332 (394)
T ss_pred CEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCE---EEEEeC-CCCCCCCCcHH
Confidence 34554455444 44444444433458999999999999999999888887776 777764 44445543333
No 69
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.74 E-value=8.7e-05 Score=72.78 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=83.6
Q ss_pred CcEEEccCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCC--CCCc
Q psy4209 283 KFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIE--GQGP 359 (856)
Q Consensus 283 ~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~--g~Gp 359 (856)
+.+.++.+.+|.+.+|++.||+..+.++++ ..++|.|+..+..+|-+ . |....|++++..+ |.. +.+.
T Consensus 34 ~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~--~~~~gpg~~~~~~~l~~---a----~~~~~Pvl~i~~~~~~~~~~~~~ 104 (154)
T cd06586 34 DKRIIDTVIHELGAAGAAAGYARAGGPPVV--IVTSGTGLLNAINGLAD---A----AAEHLPVVFLIGARGISAQAKQT 104 (154)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhhCCEEE--EEcCCCcHHHHHHHHHH---H----HhcCCCEEEEeCCCChhhhccCc
Confidence 467889999999999999999999888888 89999999888776642 1 2335899999865 432 3344
Q ss_pred cCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC--CCCCcEEEEecc
Q psy4209 360 EHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL--PFRRPLVVLTPK 426 (856)
Q Consensus 360 ~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~--~~~~P~i~~e~K 426 (856)
.|+.. . ..++..++++.+..|+. .+....++++++. ..+.|+++..|+
T Consensus 105 ~q~~~-~-----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 105 FQSMF-D-----------------LGMYRSIPEANISSPSP-AELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred ccccC-H-----------------HHHHHHhhheEEEeCCH-HHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 34331 1 24566889999987655 5666666766651 237799998763
No 70
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=97.60 E-value=0.0021 Score=78.84 Aligned_cols=232 Identities=17% Similarity=0.210 Sum_probs=125.3
Q ss_pred CCeEEEeeccCCCCcccc----cceeeeecCCCCEeecCcc-c---ccccCCcEEEccCcchHHHHH----HHhhhccCC
Q psy4209 240 GHHIRLIGQDSKRGTFSH----RHAVYFDQATGNTYTPLHH-I---GAEAGKFHVYNSILNEMAALS----FEYGYSLVD 307 (856)
Q Consensus 240 g~~V~l~GeDv~~gtf~~----Rh~v~~d~~~gg~~~~~~~-L---~~~~g~~rV~nspLsE~~i~G----~~~G~a~~g 307 (856)
|.+|+=+=-|+.| ||.= |-.-+|.+ .|-.|.|... . +++-...+++---|+|.+.++ ++.-||..|
T Consensus 509 g~riVpi~pDear-tfgm~g~f~~~gIy~~-~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g 586 (885)
T TIGR00759 509 GKRIVPIVPDEAR-TFGMEGLFRQIGIYSP-HGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHG 586 (885)
T ss_pred ccceeecCCCccc-cCChHHhhcccCccCC-CCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCC
Confidence 5667777778765 3321 11222222 2333444321 0 111134679999999998765 345566666
Q ss_pred --CCcceeecccc-----hhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccC---CCCCccCCCCchhhhhhhcCCCC
Q psy4209 308 --PNFLVIWEAQF-----GDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI---EGQGPEHSSARPERFLELCSDSP 377 (856)
Q Consensus 308 --~~~l~~wE~qf-----gDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~---~g~Gp~HSsar~Er~lql~~e~~ 377 (856)
+-|+-|+--|| ||.++-|-+|- .-++++=.|.|- -|-|-+|-+. ..
T Consensus 587 ~~miP~yi~YsmFgfqR~gD~~waa~d~~-------------argfl~g~taGrtTL~gEGlqHqdg--~s--------- 642 (885)
T TIGR00759 587 EPMIPFYIYYSMFGFQRIGDLCWAAADQR-------------ARGFLLGATAGRTTLNGEGLQHEDG--HS--------- 642 (885)
T ss_pred CeeeeeeEeeccccccchHHHHHHHhhhc-------------CCceEeccCCCcccCCCccccCccc--cc---------
Confidence 45777888899 67777664443 123444444444 1444454331 00
Q ss_pred cchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhCCCC---CcEEEEecccccCCCCCCCcccccccC--------CC
Q psy4209 378 RCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFR---RPLVVLTPKALLRHPQVRSTFEDLSLD--------TK 446 (856)
Q Consensus 378 ~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~---~P~i~~e~K~L~r~~~~~s~~~e~~~~--------~~ 446 (856)
..+.+.+||+.-.-|+-.++...+|+..+++=.. +-...+ ++|..+.... ++ |+ +.
T Consensus 643 ------~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yyl---t~~ne~~~qp---~~-p~~~~egIlkG~ 709 (885)
T TIGR00759 643 ------LLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYV---TVMNENYVQP---PM-PEGAEEGILKGL 709 (885)
T ss_pred ------hHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEE---EecCCCCCCC---CC-CcchHHhHHhCc
Confidence 0233578999999999999999999888875111 111111 1222221111 11 21 22
Q ss_pred ccccCCCcccccCCCCceEEEEcCCcHHHHHHHHHHHcCC-CCcEEEEEecccCCCCHHHHHHHHhcCCC
Q psy4209 447 FRAYLPDTMADRNKDKVEKYILCSGKIYYDLIEARDAANL-TEQIAIARLEQISPFPYRAFINDVSSYKN 515 (856)
Q Consensus 447 f~~~i~~a~~~~~~~~v~tvv~~~g~v~~~l~~a~~~~~~-~~~vevi~l~~L~P~~~~~i~~sv~kt~~ 515 (856)
|+.- ++.....+.+| .|+..|..+..+++||+.+... ++.+.|+-+-+..=|..+.. .+++.++
T Consensus 710 Y~l~--~~~~~~~~~~V-qLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~--~~eR~n~ 774 (885)
T TIGR00759 710 YRFE--TSTEEKAKGHV-QLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGH--DVERWNL 774 (885)
T ss_pred eecc--cCCCCCCCccE-EEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHH--HHHHHHh
Confidence 2211 11100001245 6666666677888888876432 58999998877666655544 2355554
No 71
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=97.58 E-value=0.00036 Score=71.29 Aligned_cols=66 Identities=20% Similarity=0.110 Sum_probs=51.3
Q ss_pred EEEEEEcCCceeccCCCCccc-cchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 12 TIHIIINNQVGFTANPWETRS-SMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 12 vIfvveNNqyg~sT~~~~~~s-~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
+++|+.||+||+......... ......+|++||++++.|+| +++++.++.++|. ++|+|||+.+-+
T Consensus 90 ~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 90 IIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred EEEEEcCccccccCCCCCCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 566678889998754322222 34688999999999999998 8888888877775 689999999954
No 72
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.54 E-value=0.0023 Score=82.33 Aligned_cols=205 Identities=12% Similarity=0.073 Sum_probs=116.3
Q ss_pred CcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHH--HHHHHHhhhhhcCCccCeEEEcCc-cCC--CC--CccCC
Q psy4209 290 ILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAV--FDQWISSARSKWNIDSGLVLLLPH-GIE--GQ--GPEHS 362 (856)
Q Consensus 290 pLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~--id~~~a~~~~kw~~~~~lv~~lP~-G~~--g~--Gp~HS 362 (856)
.=||.+.+|..+|++..|-+..+ |. .++-. +-..+.+ .-|...|+||-... ++. |. .+.||
T Consensus 57 ~EsE~~A~~av~GA~~aGara~T--------~T-Ss~GL~LM~e~l~~---~ag~~~P~Vi~va~R~~~~~~~~i~~dh~ 124 (1165)
T TIGR02176 57 MQSEAGAAGAVHGALQTGALTTT--------FT-ASQGLLLMIPNMYK---IAGELLPCVFHVSARAIAAHALSIFGDHQ 124 (1165)
T ss_pred ccchHHHHHHHHhHhhcCCCEEE--------ec-ChhHHHHHHHHHHH---HHhccCCEEEEEecCCCCCCCCccCCCch
Confidence 44899999999999999988877 22 12111 1111211 11235799998865 222 21 35677
Q ss_pred CCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCCCCCCCc---
Q psy4209 363 SARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRHPQVRST--- 437 (856)
Q Consensus 363 sar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~~~~~s~--- 437 (856)
.. ..+..-||.|+.|+|+.+++++-..+.. .+.+.|+|+|..-..+.|......
T Consensus 125 Dv---------------------~~~R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~ 183 (1165)
T TIGR02176 125 DV---------------------MAARQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLD 183 (1165)
T ss_pred HH---------------------HHhhcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCC
Confidence 61 2234579999999999999998776643 246899999887543322210000
Q ss_pred ---ccccccC---CCcc-----------------------------------------------ccCCC--cccc-cCCC
Q psy4209 438 ---FEDLSLD---TKFR-----------------------------------------------AYLPD--TMAD-RNKD 461 (856)
Q Consensus 438 ---~~e~~~~---~~f~-----------------------------------------------~~i~~--a~~~-~~~~ 461 (856)
+.++.+. ..|+ ...|. ..+. -...
T Consensus 184 ~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~ 263 (1165)
T TIGR02176 184 YEDMASLVNQELVAAFRKRSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAP 263 (1165)
T ss_pred HHHHHhhcChhhcccccccccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCC
Confidence 0000000 0010 00010 0000 0112
Q ss_pred CceE-EEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCC
Q psy4209 462 KVEK-YILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFG 530 (856)
Q Consensus 462 ~v~t-vv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G 530 (856)
|..+ ||++|...--..++.+.+...|.+|-+|++|.+.|||.+.|.+.+.++-+ .+++++.- ...|
T Consensus 264 dAe~ViV~~GS~~~~~~eav~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK--~I~Vler~-~~~g 330 (1165)
T TIGR02176 264 DAERVIIAMGSVAETIEETVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVK--RIAVLDRT-KEPG 330 (1165)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCC--EEEEEECC-CCCC
Confidence 3333 55555554333344433333358999999999999999999999965433 37777654 4444
No 73
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.52 E-value=0.0041 Score=73.40 Aligned_cols=243 Identities=20% Similarity=0.184 Sum_probs=156.8
Q ss_pred cEEEccCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCC
Q psy4209 284 FHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSS 363 (856)
Q Consensus 284 ~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSs 363 (856)
.-++-=.++|--.+-.++|+++.|-|.++-.- .-| .|.|.|.+.+....| ..-+||++.--- .| .|||
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK-hVG--lNvAsDpl~s~ay~G-----v~GGlviv~aDD---pg-~~SS 125 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMK-HVG--LNVASDPLMSLAYAG-----VTGGLVIVVADD---PG-MHSS 125 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEec-ccc--cccchhhhhhhhhcC-----ccccEEEEEccC---CC-cccc
Confidence 45677789999999999999999999998322 222 577766665433322 356888887321 11 3666
Q ss_pred CchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhh--hCCCCCcEEEEecccccCCCCC--CC--c
Q psy4209 364 ARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQL--LLPFRRPLVVLTPKALLRHPQV--RS--T 437 (856)
Q Consensus 364 ar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i--~~~~~~P~i~~e~K~L~r~~~~--~s--~ 437 (856)
. .| ++..+|.....+-|+.|++|..++.+.+.+. .+.+.-|||+-.-..+-..... .+ +
T Consensus 126 q-ne--------------qdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~ 190 (640)
T COG4231 126 Q-NE--------------QDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNR 190 (640)
T ss_pred c-ch--------------hHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEecccc
Confidence 2 11 2235777888899999999999999999985 4567999998776655433221 00 0
Q ss_pred ccccccCC-CccccCC-------Cc-cc----------------------ccCCCCceEE-EEcCCcHHHHHHHHHHHcC
Q psy4209 438 FEDLSLDT-KFRAYLP-------DT-MA----------------------DRNKDKVEKY-ILCSGKIYYDLIEARDAAN 485 (856)
Q Consensus 438 ~~e~~~~~-~f~~~i~-------~a-~~----------------------~~~~~~v~tv-v~~~g~v~~~l~~a~~~~~ 485 (856)
...+.+.. .|...++ .+ .. ...+++..+| |.++|.-|-.++.|-+..|
T Consensus 191 ~~~~~~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~lg 270 (640)
T COG4231 191 RPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDLG 270 (640)
T ss_pred CCCCccccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHcC
Confidence 01111111 2222221 11 00 0112211234 5556666666666655556
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhCCCCeEEecCCCCCCCCCC
Q psy4209 486 LTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDPSSVPASG 564 (856)
Q Consensus 486 ~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~~~~~~~vgr~~~~~pa~g 564 (856)
.+..|.+|-+-+|||...|.+-++.-.+ ++||+|-- .+|..++.+.+.....++.+.|.+..--|..|
T Consensus 271 --l~~~~lklg~~~Plp~~~i~~F~~g~~~---vlVVEE~~------P~iE~qv~~~l~~~g~~v~v~GKd~gllP~~G 338 (640)
T COG4231 271 --LDDELLKLGTPYPLPEQLIENFLKGLER---VLVVEEGE------PFIEEQVKALLYDAGLPVEVHGKDEGLLPMEG 338 (640)
T ss_pred --CCceeEEecCCcCCCHHHHHHHHhcCcE---EEEEecCC------chHHHHHHHHHHhcCCceEeecccccccCccc
Confidence 6888999999999999999999987776 88887643 26777777777555667888898866566555
No 74
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=97.34 E-value=0.00032 Score=69.86 Aligned_cols=66 Identities=20% Similarity=0.121 Sum_probs=48.5
Q ss_pred cEEEEEEcCCceeccCCC-----------CccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEE
Q psy4209 11 GTIHIIINNQVGFTANPW-----------ETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFID 79 (856)
Q Consensus 11 GvIfvveNNqyg~sT~~~-----------~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe 79 (856)
.+++||.||++...+... .......+..+|++||+++++|++ ++++.++.+ .+++.+||+|||
T Consensus 92 ~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~----~a~~~~~p~~i~ 165 (168)
T cd00568 92 PVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALA----EALAAGGPALIE 165 (168)
T ss_pred CcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHH----HHHhCCCCEEEE
Confidence 688999999877666422 222344688999999999999986 555554444 455789999999
Q ss_pred Eee
Q psy4209 80 IIG 82 (856)
Q Consensus 80 ~~t 82 (856)
+.|
T Consensus 166 v~~ 168 (168)
T cd00568 166 VKT 168 (168)
T ss_pred EEC
Confidence 975
No 75
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.29 E-value=0.005 Score=69.92 Aligned_cols=232 Identities=15% Similarity=0.123 Sum_probs=134.7
Q ss_pred CcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCC-ccCeEEEcCc-cC--CCC--CccCCC
Q psy4209 290 ILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNI-DSGLVLLLPH-GI--EGQ--GPEHSS 363 (856)
Q Consensus 290 pLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~-~~~lv~~lP~-G~--~g~--Gp~HSs 363 (856)
.=||.+-++..+|+++.|-|..+ ----.-|+. +.-.-+++++ ..|+|+.... +. .|. -++||.
T Consensus 53 ~EsE~~a~s~v~GA~~aGar~~T--aTSg~Gl~L---------m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D 121 (365)
T COG0674 53 MESEIGAISAVIGASYAGARAFT--ATSGQGLLL---------MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSD 121 (365)
T ss_pred eccHHHHHHHHHHHHhhCcceEe--ecCCccHHH---------HHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHH
Confidence 45899999999999999999998 322223332 1222234443 5899999875 32 232 234555
Q ss_pred CchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCCCCCC-Cccc-
Q psy4209 364 ARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRHPQVR-STFE- 439 (856)
Q Consensus 364 ar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~~~~~-s~~~- 439 (856)
..++...|+-+++-+|..++|.+-..+.. .+.+-|++++..+.+..|.... ....
T Consensus 122 ---------------------~~~~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~ 180 (365)
T COG0674 122 ---------------------LMAARDTGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQ 180 (365)
T ss_pred ---------------------HHHHHccCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCcc
Confidence 22334458888888899999998777653 2468999999887776665111 0000
Q ss_pred ccc--cCCCcccc----------CCC---cc-----------------------c------c-cC-------C-CCc-eE
Q psy4209 440 DLS--LDTKFRAY----------LPD---TM-----------------------A------D-RN-------K-DKV-EK 465 (856)
Q Consensus 440 e~~--~~~~f~~~----------i~~---a~-----------------------~------~-~~-------~-~~v-~t 465 (856)
+.. .-..|++. .|. +. . . ++ + .|. .-
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~v 260 (365)
T COG0674 181 DLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIV 260 (365)
T ss_pred ccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEE
Confidence 000 00111110 010 00 0 0 00 0 222 24
Q ss_pred EEEcCCcHHHHHHHHHHHc-CCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHH-HHHhh
Q psy4209 466 YILCSGKIYYDLIEARDAA-NLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQAR-MCSVM 543 (856)
Q Consensus 466 vv~~~g~v~~~l~~a~~~~-~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~-i~~~~ 543 (856)
||+||...--.++++.... ..|++|-++++|++.|||.+.|.+.++++.. +.++.-|.-..| .+++... +...+
T Consensus 261 iV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~---~~Vl~~e~~~g~-~~~~l~~~~~~~~ 336 (365)
T COG0674 261 IVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNA---VVVLDVEISLGG-LAEPLYLEVLAAL 336 (365)
T ss_pred EEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccce---eEEEEEccCCcc-chhhHHHHhhcce
Confidence 6777766666666665432 3358999999999999999999999999884 444444444444 4444432 22211
Q ss_pred hhCCCCeEEecCCCC
Q psy4209 544 EITTDPVCYIGRDPS 558 (856)
Q Consensus 544 ~~~~~~~~~vgr~~~ 558 (856)
. ......+-||+..
T Consensus 337 ~-~~~~~~~~g~~~~ 350 (365)
T COG0674 337 Y-VESRYKLGGRDFT 350 (365)
T ss_pred e-eceeeccCCccCC
Confidence 1 1223456666653
No 76
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=97.22 E-value=0.00075 Score=68.34 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=49.4
Q ss_pred cEEEEEEcCC-ceeccCCC-----------------CccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHcc
Q psy4209 11 GTIHIIINNQ-VGFTANPW-----------------ETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTF 72 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~~~-----------------~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g 72 (856)
.+++||.||+ ||+++... .......+.++|++||+++++|++ ++++.++.++|++ .
T Consensus 95 p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~ 168 (178)
T cd02002 95 PVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----E 168 (178)
T ss_pred CeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----C
Confidence 5788888886 99865211 011234678999999999999988 8888777777764 6
Q ss_pred CCcEEEEEee
Q psy4209 73 KRDAFIDIIG 82 (856)
Q Consensus 73 ~gPvlIe~~t 82 (856)
++|++||+.+
T Consensus 169 ~~p~vi~v~v 178 (178)
T cd02002 169 GGPALIEVVV 178 (178)
T ss_pred CCCEEEEEEC
Confidence 8999999863
No 77
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.071 Score=63.74 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=46.9
Q ss_pred CCccCcEEEEEEcCCceeccCCCCccc-cchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHH
Q psy4209 6 PYNTHGTIHIIINNQVGFTANPWETRS-SMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLL 65 (856)
Q Consensus 6 ~y~~gGvIfvveNNqyg~sT~~~~~~s-~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~A 65 (856)
.=+.|-+|=|..=|+|-|+-|+.-++- ...+...-++||-.-+-|+|.|+..+...+...
T Consensus 200 p~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa~ 260 (793)
T COG3957 200 PARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAV 260 (793)
T ss_pred ccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhHHHH
Confidence 346788899999999999998765543 345777888999999999999998866555443
No 78
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.01 E-value=0.0058 Score=67.35 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=84.4
Q ss_pred ccCcEEEEEEcCCceeccCCCCccc-----------------cchhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHH
Q psy4209 8 NTHGTIHIIINNQVGFTANPWETRS-----------------SMYCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYR 69 (856)
Q Consensus 8 ~~gGvIfvveNNqyg~sT~~~~~~s-----------------~~~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~ 69 (856)
+.-.++|||+||+|..+|-...+.+ ..++..+++++|++.+ +++--|+..+.+++++|++
T Consensus 118 ~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-- 195 (300)
T PRK11864 118 RNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-- 195 (300)
T ss_pred hCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh--
Confidence 3456899999999998885332222 1345778999999876 7899999999999999986
Q ss_pred HccCCcEEEEEeeecCCCCCCCCCC---------------CCC-----------CHHHHHHHHhcCCHHHHHHHHHHHcC
Q psy4209 70 QTFKRDAFIDIIGYRRHGHNEGDDP---------------SFT-----------QPLMYEKIKQTKPLFEKYTQKLLQEK 123 (856)
Q Consensus 70 R~g~gPvlIe~~tYR~~GHse~D~~---------------~yr-----------~~~e~~~~~~~dpi~~~~~~~Li~~G 123 (856)
.+||.||++.+-=..|+-..++. -|+ ++. +...+++.|+ +++|..+|
T Consensus 196 --~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g~~~~~~~~~~-~~~~~~~~pv----~~~l~~q~ 268 (300)
T PRK11864 196 --IRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENGKFKLNSPSKT-LLDKKKRKPV----EEYLKLQG 268 (300)
T ss_pred --CCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECCEEEEccCCcc-ccccccCCCH----HHHHhhcc
Confidence 68999998865433333211111 011 000 0011223454 45555554
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy4209 124 ---VITEDMVTLEVQAYQQKLESEYEKSK 149 (856)
Q Consensus 124 ---~~teeel~~i~~~~~~~v~~a~~~A~ 149 (856)
.+.+++++++++.+.+..+.-...++
T Consensus 269 Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 269 RFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888877777666544443
No 79
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=96.81 E-value=0.0032 Score=63.57 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=46.6
Q ss_pred cEEEEEEc-CCceeccCCCCc-----------cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEE
Q psy4209 11 GTIHIIIN-NQVGFTANPWET-----------RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFI 78 (856)
Q Consensus 11 GvIfvveN-Nqyg~sT~~~~~-----------~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlI 78 (856)
.+++||.| |+||+....... ........+|++||+++++|+ +++++.++.++|. +.++|+||
T Consensus 94 pv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~li 167 (172)
T cd02004 94 PIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRAL----ASGKPALI 167 (172)
T ss_pred CEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----HcCCCEEE
Confidence 35555555 579987643221 123467899999999999998 4777766666655 45799999
Q ss_pred EEee
Q psy4209 79 DIIG 82 (856)
Q Consensus 79 e~~t 82 (856)
|+.+
T Consensus 168 ev~i 171 (172)
T cd02004 168 NVII 171 (172)
T ss_pred EEEc
Confidence 9975
No 80
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=96.79 E-value=0.0033 Score=63.97 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=46.2
Q ss_pred cEEEEEEcCC-ceeccCCC-------Cc--cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 11 GTIHIIINNQ-VGFTANPW-------ET--RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~~~-------~~--~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
.+++||.||+ ||+.+... .. .....+...|++||++++.|+ +++++..+.++ +++.++|+|||+
T Consensus 97 p~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~----a~~~~~p~liev 170 (178)
T cd02014 97 PVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDE----ALAADGPVVIDV 170 (178)
T ss_pred CcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHH----HHhCCCCEEEEE
Confidence 3678888875 88743110 01 123467889999999999987 56666554444 455689999999
Q ss_pred eeec
Q psy4209 81 IGYR 84 (856)
Q Consensus 81 ~tYR 84 (856)
.+-+
T Consensus 171 ~~~~ 174 (178)
T cd02014 171 VTDP 174 (178)
T ss_pred EeCC
Confidence 9854
No 81
>PRK07524 hypothetical protein; Provisional
Probab=96.71 E-value=0.0032 Score=74.85 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=52.3
Q ss_pred EEEEEEcC-Cceecc---------CCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEe
Q psy4209 12 TIHIIINN-QVGFTA---------NPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDII 81 (856)
Q Consensus 12 vIfvveNN-qyg~sT---------~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~ 81 (856)
+++||.|| .||+.. +........+...+|++||++++.|+ +++++..+.++|++ .+||+|||+.
T Consensus 454 i~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~ 527 (535)
T PRK07524 454 LIVLLWNNDGYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVD 527 (535)
T ss_pred eEEEEEECCchHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEE
Confidence 56666666 888542 11111123467899999999999996 88888777777654 6899999999
Q ss_pred eecCCCC
Q psy4209 82 GYRRHGH 88 (856)
Q Consensus 82 tYR~~GH 88 (856)
++|++|.
T Consensus 528 ~~~~~~~ 534 (535)
T PRK07524 528 QACWFAA 534 (535)
T ss_pred CCccccc
Confidence 9999873
No 82
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=96.63 E-value=0.011 Score=66.32 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=70.6
Q ss_pred CccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecC
Q psy4209 7 YNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHV-NADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRR 85 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~V-DG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~ 85 (856)
|.-+-+|.|+-+|++.+..+++.... ..+.++-++||-.++.| ||+|+++++.|...|.. ..++|++|.+.|-.=
T Consensus 170 ~~L~nLi~i~D~N~~q~dg~~~~~~~-~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG 245 (332)
T PF00456_consen 170 YKLDNLIVIYDSNGIQIDGPTDIVFS-EDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKG 245 (332)
T ss_dssp TT-TTEEEEEEEESEETTEEGGGTHH-SHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TT
T ss_pred hCCCCEEEEEecCCcccCCCcccccc-hHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEe
Confidence 45677899999999999888765543 45788999999999998 99999999999998742 337999999999887
Q ss_pred CCCC-CCCCCC--CC--CHHHHHHHHh
Q psy4209 86 HGHN-EGDDPS--FT--QPLMYEKIKQ 107 (856)
Q Consensus 86 ~GHs-e~D~~~--yr--~~~e~~~~~~ 107 (856)
+|-+ +.+... +. ++++++..++
T Consensus 246 ~G~~~~e~~~~~Hg~~l~~ee~~~~k~ 272 (332)
T PF00456_consen 246 KGVPFMEGTAKWHGSPLTEEEVEQAKK 272 (332)
T ss_dssp TTSTTTTTSGGGTSS--HHHHHHHHHH
T ss_pred cCchhhcccchhhccCCcHHHHHHHHH
Confidence 7774 333322 22 3456666654
No 83
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=96.60 E-value=0.0027 Score=65.80 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=52.5
Q ss_pred EEEEEEcCCceeccCC-----CC-----ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEe
Q psy4209 12 TIHIIINNQVGFTANP-----WE-----TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDII 81 (856)
Q Consensus 12 vIfvveNNqyg~sT~~-----~~-----~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~ 81 (856)
+++|+.||+||+.... .. .....++..+|++||+++++|+. ++++..+.++|++.+|. ++|+|||+.
T Consensus 101 i~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~~~~~~-~~p~liev~ 177 (196)
T cd02013 101 TAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVDK--PEDVGPALQKAIAMMAE-GKTTVIEIV 177 (196)
T ss_pred EEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHhcCCC-CCeEEEEEE
Confidence 4555577888875421 00 11235678999999999999885 88888899998876655 789999999
Q ss_pred eecCC
Q psy4209 82 GYRRH 86 (856)
Q Consensus 82 tYR~~ 86 (856)
+.+..
T Consensus 178 v~~~~ 182 (196)
T cd02013 178 CDQEL 182 (196)
T ss_pred eCccc
Confidence 86533
No 84
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=96.43 E-value=0.0075 Score=72.39 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=43.2
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+...+|++||+++++|+ +++++..+.++|++.+++++||+|||+.+
T Consensus 520 ~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 520 PDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred CCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 467889999999999997 99999999999999988889999999975
No 85
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=96.22 E-value=0.017 Score=57.82 Aligned_cols=66 Identities=15% Similarity=-0.012 Sum_probs=47.9
Q ss_pred cEEEEE-EcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 11 GTIHII-INNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 11 GvIfvv-eNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+++|| .|+.||+.-.............+|++||+++++|+ +++++..+.++|++ .++|++||+.+
T Consensus 88 ~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i 154 (157)
T cd02001 88 NLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPI 154 (157)
T ss_pred CEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 355555 55667764321111124578999999999999884 69999888888875 47899999987
No 86
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=96.08 E-value=0.024 Score=58.06 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=53.5
Q ss_pred CccCcEEEEEEcCCceeccCCCCc------cccchhhhhhhhcC----CcEEEEeCCCHHHHHHHHHHHHHHHHccCCcE
Q psy4209 7 YNTHGTIHIIINNQVGFTANPWET------RSSMYCTCVAKVIG----APVFHVNADEPEVVVSIMKLLARYRQTFKRDA 76 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~~~------~s~~~~sdrAk~~g----ip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPv 76 (856)
|...=+|+|+.||+|++....... ........+|++|| +++++| .++++..+|.++|++ ..++|+
T Consensus 93 ~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v--~~~~el~~al~~a~~---~~~~p~ 167 (183)
T cd02005 93 YGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRV--KTEGELDEALKDALF---NRDKLS 167 (183)
T ss_pred hCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEe--cCHHHHHHHHHHHHh---cCCCcE
Confidence 556668889999999985421111 11245788999999 688777 578888888888776 257999
Q ss_pred EEEEeeec
Q psy4209 77 FIDIIGYR 84 (856)
Q Consensus 77 lIe~~tYR 84 (856)
|||+.+.|
T Consensus 168 liev~~~~ 175 (183)
T cd02005 168 LIEVILPK 175 (183)
T ss_pred EEEEEcCc
Confidence 99999864
No 87
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=96.07 E-value=0.017 Score=59.17 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=35.4
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+...+|++||+++++|++ ++++ +.|++.+++.++|+|||+.+-+
T Consensus 131 ~d~~~~a~a~G~~~~~v~~--~~el----~~al~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 131 PDFVKLAEAYGIKGLRVEK--PEEL----EAALKEALASDGPVLLDVLVDP 175 (186)
T ss_pred CCHHHHHHHCCCceEEeCC--HHHH----HHHHHHHHhCCCCEEEEEEeCC
Confidence 4678999999999999987 4454 4555555567899999999954
No 88
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=95.97 E-value=0.024 Score=57.68 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=51.7
Q ss_pred CccCcEEEEEEcCCceeccCCCCc---------cccchhhhhhhhcCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCcE
Q psy4209 7 YNTHGTIHIIINNQVGFTANPWET---------RSSMYCTCVAKVIGAPVFHV-NADEPEVVVSIMKLLARYRQTFKRDA 76 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~~~---------~s~~~~sdrAk~~gip~~~V-DG~D~~aV~~a~~~Av~~~R~g~gPv 76 (856)
|...-+++|+.||.||+.-..... ....++..+|++||+++++| |+.|++++.++.++|.+ .++|+
T Consensus 95 ~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~ 170 (178)
T cd02008 95 NKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVS 170 (178)
T ss_pred cCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCE
Confidence 455556666666777764321110 01246889999999999999 89999998888888764 47899
Q ss_pred EEEEee
Q psy4209 77 FIDIIG 82 (856)
Q Consensus 77 lIe~~t 82 (856)
||++.+
T Consensus 171 lI~v~~ 176 (178)
T cd02008 171 VIIAKR 176 (178)
T ss_pred EEEEeC
Confidence 999864
No 89
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=95.48 E-value=0.028 Score=66.91 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=45.9
Q ss_pred cEEEEEEcCC-ceeccC----------CCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEE
Q psy4209 11 GTIHIIINNQ-VGFTAN----------PWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFID 79 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~----------~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe 79 (856)
.+++||.||+ ||+... .........+..+|++||+++++|+. +.++..|.+ .+++.++|+|||
T Consensus 453 p~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~al~----~a~~~~~p~lie 526 (530)
T PRK07092 453 PVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVSD--AAELADALA----RALAADGPVLVE 526 (530)
T ss_pred CcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHH----HHHhCCCCEEEE
Confidence 3778888888 987431 11111234578999999999999984 566655444 444578999999
Q ss_pred Eee
Q psy4209 80 IIG 82 (856)
Q Consensus 80 ~~t 82 (856)
+.+
T Consensus 527 v~~ 529 (530)
T PRK07092 527 VEV 529 (530)
T ss_pred EEc
Confidence 975
No 90
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=95.45 E-value=0.062 Score=55.47 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=47.1
Q ss_pred cEEEEEEcCC-ceeccCCCCccccchhhhhhhhcCCcE-EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 11 GTIHIIINNQ-VGFTANPWETRSSMYCTCVAKVIGAPV-FHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~~~~~~s~~~~sdrAk~~gip~-~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+++||.||+ ||+.-.............+|++||++. .+|+ +++++.++.++|++ .++|+|||+.+=+
T Consensus 95 ~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~ 164 (188)
T cd03371 95 NLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRP 164 (188)
T ss_pred CcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 4566666655 565321111112356889999999997 5887 89998888888763 5789999999944
No 91
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=95.20 E-value=0.032 Score=55.15 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=39.3
Q ss_pred cchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 33 SMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 33 ~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
...+..+|+++|+++++|+..|++++.++.++|+ +.+||+|||+
T Consensus 110 ~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 110 NPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp TCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred cCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 3468899999999999999999999999888888 6789999996
No 92
>PRK06163 hypothetical protein; Provisional
Probab=95.16 E-value=0.11 Score=54.28 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=53.8
Q ss_pred cEEEEEEcC-CceeccCCCC-ccccchhhhhhhhcCCc-EEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCC
Q psy4209 11 GTIHIIINN-QVGFTANPWE-TRSSMYCTCVAKVIGAP-VFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHG 87 (856)
Q Consensus 11 GvIfvveNN-qyg~sT~~~~-~~s~~~~sdrAk~~gip-~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~G 87 (856)
.+++||-|| .||+.-.... .....++...|++||++ +++|. +++++..+.++|++ .++|+|||+.+-+.
T Consensus 104 pi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~-- 175 (202)
T PRK06163 104 NLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDK-- 175 (202)
T ss_pred CeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCC--
Confidence 466677666 7886422111 11234678899999998 67775 88888888888764 47999999998532
Q ss_pred CCCCCCC-CCCCHHHHH
Q psy4209 88 HNEGDDP-SFTQPLMYE 103 (856)
Q Consensus 88 Hse~D~~-~yr~~~e~~ 103 (856)
.+-+ ..++|.|.+
T Consensus 176 ---~~~~~~~~~~~~~~ 189 (202)
T PRK06163 176 ---PGVGTTERDPAQIR 189 (202)
T ss_pred ---CCCCCCCCCHHHHH
Confidence 1211 236776654
No 93
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.16 E-value=0.17 Score=51.85 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=44.6
Q ss_pred cEEEEEEcCC-ceeccCCCCcc-ccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 11 GTIHIIINNQ-VGFTANPWETR-SSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~~~~~~-s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.+++||-||+ ||+.-...... ...+....|++||+++.+. ..+++++..+.+ |+ +.++|+|||+.+-
T Consensus 88 pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~~~~-v~~~~~l~~al~-a~----~~~~p~li~v~~~ 156 (181)
T TIGR03846 88 NLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEK-VADEEELRDALK-AL----AMKGPTFIHVKVK 156 (181)
T ss_pred CeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCeEEE-eCCHHHHHHHHH-HH----cCCCCEEEEEEeC
Confidence 5677776665 77753211111 1345789999999999882 356777766664 43 4579999999884
No 94
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=94.97 E-value=0.042 Score=57.31 Aligned_cols=72 Identities=18% Similarity=0.057 Sum_probs=51.5
Q ss_pred CccCcEEEEEEcCCceeccC------C-CC-----c-----------cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHH
Q psy4209 7 YNTHGTIHIIINNQVGFTAN------P-WE-----T-----------RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMK 63 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~------~-~~-----~-----------~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~ 63 (856)
|...=+++|+.||.||+.-. . .. . ....+...+|++||+++++| .+++++..|.+
T Consensus 91 ~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v--~~~~el~~al~ 168 (205)
T cd02003 91 EGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV--KTIEELKAALA 168 (205)
T ss_pred cCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE--CCHHHHHHHHH
Confidence 55555777777788886321 0 00 0 11346788999999999999 48999888888
Q ss_pred HHHHHHHccCCcEEEEEeeec
Q psy4209 64 LLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 64 ~Av~~~R~g~gPvlIe~~tYR 84 (856)
+|+ +.+||+|||+.+=+
T Consensus 169 ~a~----~~~gp~lIeV~v~~ 185 (205)
T cd02003 169 KAK----ASDRTTVIVIKTDP 185 (205)
T ss_pred HHH----hCCCCEEEEEEeec
Confidence 875 45899999999843
No 95
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=94.95 E-value=0.083 Score=53.88 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=49.8
Q ss_pred CccCcEEEEEEcCCceeccCC--------CC-ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEE
Q psy4209 7 YNTHGTIHIIINNQVGFTANP--------WE-TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAF 77 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~--------~~-~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvl 77 (856)
|...=+++|+-||.||+.... .. .....+....|++||+++++|+ +++++..+.++|.+ .++|+|
T Consensus 91 ~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~l 164 (177)
T cd02010 91 LKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHV 164 (177)
T ss_pred HCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEE
Confidence 344445566666778875310 00 0012357789999999999995 78888888888764 579999
Q ss_pred EEEeeec
Q psy4209 78 IDIIGYR 84 (856)
Q Consensus 78 Ie~~tYR 84 (856)
||+.+-+
T Consensus 165 iev~~~~ 171 (177)
T cd02010 165 IDCPVDY 171 (177)
T ss_pred EEEEecc
Confidence 9999843
No 96
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=94.80 E-value=0.07 Score=55.48 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=40.5
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+...+|++||+++++|+ +++++..|.++|++.+++.++|+|||+.+=+
T Consensus 147 ~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 147 VDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred CCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 467889999999999985 5888888888888776656899999999843
No 97
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=94.57 E-value=0.092 Score=55.18 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=63.4
Q ss_pred CCccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 6 PYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 6 ~y~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
+|.-.-+|-||.-|..-..-.+++..+...+.++-++||-.++.|||+|++++++|...+. +..++|.+|=+.|-
T Consensus 167 h~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~---~~~~rP~~IIa~Tv 241 (243)
T COG3959 167 HYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAK---GSKGRPTVIIAKTV 241 (243)
T ss_pred HhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhh---ccCCCCeEEEEecc
Confidence 5677778889999999888888888888899999999999999999999999988776543 22339999988874
No 98
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=94.32 E-value=0.27 Score=56.05 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=82.6
Q ss_pred CccCcEEEEEEcCCceeccCCCCc-cccchhhhhhhhcCCcEEEEe----------------------------------
Q psy4209 7 YNTHGTIHIIINNQVGFTANPWET-RSSMYCTCVAKVIGAPVFHVN---------------------------------- 51 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~~~-~s~~~~sdrAk~~gip~~~VD---------------------------------- 51 (856)
|..+-+|.|+-+|++.+..+.... .....+.++-++||-.++.||
T Consensus 174 ~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~ 253 (386)
T cd02017 174 EKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKA 253 (386)
T ss_pred hCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhh
Confidence 556778999999999999988774 345679999999999999998
Q ss_pred -----------------------------------CCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCC---CCCC
Q psy4209 52 -----------------------------------ADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHN---EGDD 93 (856)
Q Consensus 52 -----------------------------------G~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHs---e~D~ 93 (856)
|+|++++++|+..|.+. -++|++|-+.|-.=+|-+ +.+.
T Consensus 254 ~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~~~~e~~~ 330 (386)
T cd02017 254 KDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLGAAGEGRN 330 (386)
T ss_pred cchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCChhccCCc
Confidence 99999999999886642 358999999998877765 2222
Q ss_pred C----CCCCHHHHHHHHhcCCHHHHHHHHHHH
Q psy4209 94 P----SFTQPLMYEKIKQTKPLFEKYTQKLLQ 121 (856)
Q Consensus 94 ~----~yr~~~e~~~~~~~dpi~~~~~~~Li~ 121 (856)
. .-.++++++..++.=-. .++...|.+
T Consensus 331 ~~h~~~~~~~~e~~~~~~~lg~-~~~~~~~~~ 361 (386)
T cd02017 331 HAHQVKKMTEDELKALRDRFGI-PVSDEQLEE 361 (386)
T ss_pred chhcCCCCCHHHHHHHHHHcCC-CCCHHHhcc
Confidence 2 22356677766654443 555555543
No 99
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.90 E-value=0.14 Score=61.42 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=46.5
Q ss_pred cEEEEEEcCC-ceeccC-C-----CC----ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEE
Q psy4209 11 GTIHIIINNQ-VGFTAN-P-----WE----TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFID 79 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~-~-----~~----~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe 79 (856)
.+++||.||+ ||+... . .. ........++|++||+++.+|+ +++++..+.++|. +.+||+|||
T Consensus 461 ~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~li~ 534 (557)
T PRK08199 461 PIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL----ASGKPALIE 534 (557)
T ss_pred CeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEE
Confidence 4778888877 775321 0 00 0012357899999999999998 4666665555554 468999999
Q ss_pred Eeeec
Q psy4209 80 IIGYR 84 (856)
Q Consensus 80 ~~tYR 84 (856)
+.+=+
T Consensus 535 v~~~~ 539 (557)
T PRK08199 535 IRIDP 539 (557)
T ss_pred EEeCH
Confidence 99843
No 100
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=93.66 E-value=0.19 Score=60.62 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=37.7
Q ss_pred cchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 33 SMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 33 ~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
..+..++|++||+++++|+ +++++..+.++|++ .+||+|||+.+
T Consensus 486 ~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~ 529 (578)
T PRK06546 486 PVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVT 529 (578)
T ss_pred CCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 3467899999999999997 79999888887765 68999999987
No 101
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=93.61 E-value=0.2 Score=50.86 Aligned_cols=71 Identities=15% Similarity=0.035 Sum_probs=48.1
Q ss_pred CCccCcEEEEEEcCCceeccCCCC---------cc---ccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccC
Q psy4209 6 PYNTHGTIHIIINNQVGFTANPWE---------TR---SSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFK 73 (856)
Q Consensus 6 ~y~~gGvIfvveNNqyg~sT~~~~---------~~---s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~ 73 (856)
-|...=+++|+.|+.||+--.... .. ...+...+|++||+++++|+ ++++...+.++|++ .+
T Consensus 92 ~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~ 165 (175)
T cd02009 92 QEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QD 165 (175)
T ss_pred ccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CC
Confidence 344554566666666885321110 00 12456789999999999986 78888777777754 57
Q ss_pred CcEEEEEee
Q psy4209 74 RDAFIDIIG 82 (856)
Q Consensus 74 gPvlIe~~t 82 (856)
+|+|||+.+
T Consensus 166 ~p~lIev~v 174 (175)
T cd02009 166 GPHVIEVKT 174 (175)
T ss_pred CCEEEEEeC
Confidence 999999975
No 102
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.50 E-value=0.11 Score=62.24 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=52.1
Q ss_pred CccCcEEEEEEcCC-ceeccCCCCccc---------cch-hhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCc
Q psy4209 7 YNTHGTIHIIINNQ-VGFTANPWETRS---------SMY-CTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRD 75 (856)
Q Consensus 7 y~~gGvIfvveNNq-yg~sT~~~~~~s---------~~~-~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gP 75 (856)
|.. .+++||-||+ ||+.-......- ... ...+|++||+.+++|+ +++++..+.++|++ -.+|
T Consensus 451 ~~l-pv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p 523 (550)
T COG0028 451 YGL-PVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGP 523 (550)
T ss_pred hCC-CEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCC
Confidence 555 5777777776 777543211111 112 7899999999999999 89998888777765 6899
Q ss_pred EEEEEeeecC
Q psy4209 76 AFIDIIGYRR 85 (856)
Q Consensus 76 vlIe~~tYR~ 85 (856)
+|||+.+-+-
T Consensus 524 ~lidv~id~~ 533 (550)
T COG0028 524 VLIDVVVDPE 533 (550)
T ss_pred EEEEEEecCc
Confidence 9999998654
No 103
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=93.34 E-value=2.3 Score=55.06 Aligned_cols=236 Identities=13% Similarity=0.072 Sum_probs=135.5
Q ss_pred EEEccCcchHHHHHHHhhhccCCCCcc-------eeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcC--ccCC
Q psy4209 285 HVYNSILNEMAALSFEYGYSLVDPNFL-------VIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLP--HGIE 355 (856)
Q Consensus 285 rV~nspLsE~~i~G~~~G~a~~g~~~l-------~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP--~G~~ 355 (856)
-++--.+.|---+=..+|.++.+.++= .||=. =+==.|.|.|.+......|... ..++|++.- ||.
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~-K~~GvnvaaD~l~~~n~~G~~~---~GG~v~v~gDDpg~- 149 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYG-KGPGVDRAGDALKHGNAYGSSP---HGGVLVVAGDDHGC- 149 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEec-CcCCcccchhHHHHHHhhcCCC---CCcEEEEEecCCCC-
Confidence 455567888888889999996666661 12222 1112577777775433333333 356777763 233
Q ss_pred CCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhh--hCCCCCcEEEEecccccCCCC
Q psy4209 356 GQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQL--LLPFRRPLVVLTPKALLRHPQ 433 (856)
Q Consensus 356 g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i--~~~~~~P~i~~e~K~L~r~~~ 433 (856)
|||. .| ++..+++..-+|=|+.||+|.+++.+.+.+. .+.+.-||++=.-..+-....
T Consensus 150 -----~SSq-~e--------------qdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~ 209 (1159)
T PRK13030 150 -----VSSS-MP--------------HQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGS 209 (1159)
T ss_pred -----ccCc-CH--------------HHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeee
Confidence 6663 22 1224555566777999999999999888875 456788888744333322211
Q ss_pred CCCccccc----ccCCCccccCC-----------------------------Ccc-c---ccCC--CCceEEEEcCCcHH
Q psy4209 434 VRSTFEDL----SLDTKFRAYLP-----------------------------DTM-A---DRNK--DKVEKYILCSGKIY 474 (856)
Q Consensus 434 ~~s~~~e~----~~~~~f~~~i~-----------------------------~a~-~---~~~~--~~v~tvv~~~g~v~ 474 (856)
. ..+++. .....|..+.+ .+. + ...+ .++ .|| ++|+.|
T Consensus 210 ~-V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~i-GII-tsG~ay 286 (1159)
T PRK13030 210 T-VDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARV-GIV-TCGKAH 286 (1159)
T ss_pred e-EEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCE-EEE-EeCccH
Confidence 1 111110 00011211110 000 0 0001 233 444 577777
Q ss_pred HHHHHHHHHcCC-CC-----cEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhh--C
Q psy4209 475 YDLIEARDAANL-TE-----QIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEI--T 546 (856)
Q Consensus 475 ~~l~~a~~~~~~-~~-----~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~--~ 546 (856)
.++..|.+..|. +. .+.|..|-..+|||.+.|.+-++...+ ++||+|- + .+|..+|.+.+.. .
T Consensus 287 ~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~---VlVVEE~-~-----p~iE~Qlk~~l~~~~~ 357 (1159)
T PRK13030 287 LDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLEE---ILVIEEK-R-----PVIEQQIKDYLYNRPG 357 (1159)
T ss_pred HHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCCE---EEEEeCC-c-----hHHHHHHHHHHHhccc
Confidence 666666655553 11 267777779899999999999999877 8888653 2 3677888877643 1
Q ss_pred CCCeEEecCCC
Q psy4209 547 TDPVCYIGRDP 557 (856)
Q Consensus 547 ~~~~~~vgr~~ 557 (856)
..+++.+|..+
T Consensus 358 ~~~~~v~GK~~ 368 (1159)
T PRK13030 358 GARPRVVGKHD 368 (1159)
T ss_pred cCCceeEEEEC
Confidence 22356777754
No 104
>PRK08266 hypothetical protein; Provisional
Probab=93.22 E-value=0.25 Score=59.02 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=49.1
Q ss_pred EEEEEEcC-CceeccCCC-----C----c-cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 12 TIHIIINN-QVGFTANPW-----E----T-RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 12 vIfvveNN-qyg~sT~~~-----~----~-~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
+++||.|| +||+..... . . ........+|++||+++++|+. ++++..+.++|. +.++|+|||+
T Consensus 449 v~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~liev 522 (542)
T PRK08266 449 VVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDS--PEELRAALEAAL----AHGGPVLIEV 522 (542)
T ss_pred eEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHH----hCCCcEEEEE
Confidence 56666666 698753210 0 0 1123578899999999999975 667766666654 4678999999
Q ss_pred eeecCCCC
Q psy4209 81 IGYRRHGH 88 (856)
Q Consensus 81 ~tYR~~GH 88 (856)
.++|-..+
T Consensus 523 ~i~~~~~~ 530 (542)
T PRK08266 523 PVPRGSEA 530 (542)
T ss_pred EecCCCCc
Confidence 99987544
No 105
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=93.04 E-value=0.25 Score=52.81 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=44.1
Q ss_pred chhhhhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCCCCCCCC
Q psy4209 34 MYCTCVAKVIGAPVFH-VNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDP 94 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~-VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GHse~D~~ 94 (856)
.++..+|+++|++++. ++..+++++.++.++|++ ..||+|||+.+-=.-.|...|+.
T Consensus 154 ~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~~~~~~~~~ 211 (235)
T cd03376 154 KDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPTGWRFDPSK 211 (235)
T ss_pred CCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCCCCCCCHHH
Confidence 4688999999999884 788899999888888886 47899999986544445444433
No 106
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=93.02 E-value=0.37 Score=51.65 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=37.6
Q ss_pred chhhhhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFH-VNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~-VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.++..+|++||+++++ ++=.+++++..|.++|++ +.+||+|||+.+
T Consensus 156 ~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 156 KDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 4688999999999986 455668899888888875 367899999986
No 107
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.94 E-value=0.26 Score=59.45 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=44.6
Q ss_pred cEEEEEEcCC-ceeccCCCC----c------cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEE
Q psy4209 11 GTIHIIINNQ-VGFTANPWE----T------RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFID 79 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~~~~----~------~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe 79 (856)
.+++||.||+ ||+...... . ........+|++||+++++|+ +++++..+.++|. +.+||+|||
T Consensus 483 ~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIe 556 (578)
T PRK06112 483 PVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM----AAPGPTLIE 556 (578)
T ss_pred CeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEE
Confidence 3677777776 454321110 0 012356889999999999997 4667666655554 468999999
Q ss_pred Eeee
Q psy4209 80 IIGY 83 (856)
Q Consensus 80 ~~tY 83 (856)
+++=
T Consensus 557 v~~~ 560 (578)
T PRK06112 557 VITD 560 (578)
T ss_pred EEcC
Confidence 9983
No 108
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.91 E-value=0.19 Score=60.25 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=37.4
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.....+|++||+++++|+. ++++..+.++|++ .+||+|||+.+-+
T Consensus 493 ~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 493 PDFVKLAEAYGIKGIRIEK--PEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred CCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 4678999999999999887 6788777777764 3799999999953
No 109
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=92.91 E-value=2.6 Score=54.49 Aligned_cols=233 Identities=15% Similarity=0.077 Sum_probs=133.6
Q ss_pred ccCcchHHHHHHH---------hhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcC--ccCCC
Q psy4209 288 NSILNEMAALSFE---------YGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLP--HGIEG 356 (856)
Q Consensus 288 nspLsE~~i~G~~---------~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP--~G~~g 356 (856)
-=.++|---+=.. .|.++.|-+.++ = |=+-=.|.|-|.+......|... ..++|++.- ||.
T Consensus 86 e~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~--y-~K~pGvn~aaD~l~~~n~~G~~~---~GGvv~v~gDDpg~-- 157 (1165)
T PRK09193 86 QPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMW--Y-GKGPGVDRSGDVFRHANAAGTSP---HGGVLALAGDDHAA-- 157 (1165)
T ss_pred eeccCHHHHHHHHhhhcccccccceeeccceEEE--e-cCcCCccccHhHHHHHHhhcCCC---CCcEEEEEecCCCC--
Confidence 3345555444444 667777777665 1 22222567777775433333333 357777763 233
Q ss_pred CCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhh--hCCCCCcEEEEecccccCCCCC
Q psy4209 357 QGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQL--LLPFRRPLVVLTPKALLRHPQV 434 (856)
Q Consensus 357 ~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i--~~~~~~P~i~~e~K~L~r~~~~ 434 (856)
|||. .| .+..+++..-+|=|+.||+|.+++.+.+.+. .+.+.-||++=.-...-.....
T Consensus 158 ----~SSq-~e--------------qdSr~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~ 218 (1165)
T PRK09193 158 ----KSST-LP--------------HQSEHAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSAS 218 (1165)
T ss_pred ----cccc-ch--------------hhhHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeee
Confidence 6662 22 1123555567777999999999998887764 4667888887443333222111
Q ss_pred CCccccc----ccCCCccccCC-------C----------------------cc-ccc---CCCCceEEEEcCCcHHHHH
Q psy4209 435 RSTFEDL----SLDTKFRAYLP-------D----------------------TM-ADR---NKDKVEKYILCSGKIYYDL 477 (856)
Q Consensus 435 ~s~~~e~----~~~~~f~~~i~-------~----------------------a~-~~~---~~~~v~tvv~~~g~v~~~l 477 (856)
..+++. ...+.|..+.+ . +. ..+ .+.+-+--|.++|+.|.++
T Consensus 219 -V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v 297 (1165)
T PRK09193 219 -VDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDV 297 (1165)
T ss_pred -EEcCCCcccCCCcccccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHH
Confidence 111110 00011222221 0 00 000 1101122455588888888
Q ss_pred HHHHHHcCCC------CcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhC--CCC
Q psy4209 478 IEARDAANLT------EQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEIT--TDP 549 (856)
Q Consensus 478 ~~a~~~~~~~------~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~--~~~ 549 (856)
..|.+..|.. ..+.|..|-..+|||.+.|.+-++.... ++||+|- -.+|..+|.+.+... ..+
T Consensus 298 ~eal~~lg~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~---vlVVEE~------~p~iE~qlk~~l~~~~~~~r 368 (1165)
T PRK09193 298 RQALRDLGLDEETAARLGIRLYKVGMVWPLEPQGVRAFAEGLDE---ILVVEEK------RQIIEYQLKEELYNWPDDVR 368 (1165)
T ss_pred HHHHHHcCCChhhhcccCCCEEEeCCCCCCCHHHHHHHHhcCCE---EEEEecC------chHHHHHHHHHHhhccCCcC
Confidence 8777665631 1389999999999999999999998776 8888663 246888888877442 222
Q ss_pred eEEecCCC
Q psy4209 550 VCYIGRDP 557 (856)
Q Consensus 550 ~~~vgr~~ 557 (856)
.+.+|+.+
T Consensus 369 p~v~GK~~ 376 (1165)
T PRK09193 369 PRVIGKFD 376 (1165)
T ss_pred ceeEeeeC
Confidence 36788765
No 110
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=92.51 E-value=0.13 Score=54.94 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=67.2
Q ss_pred cCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCCC-C---ccCCC
Q psy4209 289 SILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEGQ-G---PEHSS 363 (856)
Q Consensus 289 spLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g~-G---p~HSs 363 (856)
-.=||-+.++..+|+|+.|.|.++. +-|-=.+.+++.|-. . -+...|+||..-. +..+. + ++|+.
T Consensus 41 ~~E~E~~A~~~~~GAs~aG~ra~t~---ts~~Gl~lm~e~l~~---a----~~~~~P~V~~~~~R~g~~~g~~~~~~q~D 110 (230)
T PF01855_consen 41 QAESEHAAMEAAIGASAAGARAMTA---TSGPGLNLMAEPLYW---A----AGTELPIVIVVVQRAGPSPGLSTQPEQDD 110 (230)
T ss_dssp E-SSHHHHHHHHHHHHHTT--EEEE---EECCHHHHHCCCHHH---H----HHTT--EEEEEEEB---SSSB--SB-SHH
T ss_pred EecchHHHHHHHHHHHhcCCceEEe---ecCCcccccHhHHHH---H----HHcCCCEEEEEEECCCCCCCCcCcCChhH
Confidence 3679999999999999999999982 222112223222311 1 1235788887754 22222 2 23333
Q ss_pred CchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh--CCCCCcEEEEecccccCC
Q psy4209 364 ARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL--LPFRRPLVVLTPKALLRH 431 (856)
Q Consensus 364 ar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~--~~~~~P~i~~e~K~L~r~ 431 (856)
..++..-||.|+.|+|+.+++.+.+.+.+ .+++.|||++....+.-|
T Consensus 111 ---------------------~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~sh 159 (230)
T PF01855_consen 111 ---------------------LMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLCSH 159 (230)
T ss_dssp ---------------------HHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCCTC
T ss_pred ---------------------HHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhhcC
Confidence 23344589999999999999999988854 357999999999988744
No 111
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=92.46 E-value=2.7 Score=54.40 Aligned_cols=222 Identities=12% Similarity=0.038 Sum_probs=126.5
Q ss_pred HHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcC--ccCCCCCccCCCCchhhhhhhcCCC
Q psy4209 299 FEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLP--HGIEGQGPEHSSARPERFLELCSDS 376 (856)
Q Consensus 299 ~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP--~G~~g~Gp~HSsar~Er~lql~~e~ 376 (856)
...|.+..|-+.++ = |=+-=.|.|-|.+....+.+ .+...++|++.- ||. |||. .|
T Consensus 109 ~~~~a~~dGv~~lw--y-gK~pGvn~aaD~l~h~n~~g---t~~~GGvv~v~gDDpg~------~SSq-~e--------- 166 (1186)
T PRK13029 109 LDPGAKRDGVFGMW--Y-GKGPGVDRSGDALRHANLAG---TSPLGGVLVLAGDDHGA------KSSS-VA--------- 166 (1186)
T ss_pred cccceeeccceEEE--e-cCcCCcccchhHHHHhhccc---cCCCCcEEEEEecCCCC------cccc-CH---------
Confidence 34555555555443 1 11112456666664322222 223457777763 233 6663 22
Q ss_pred CcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhh--hCCCCCcEEEEecccccCCCCCCCccccc----ccCCCcccc
Q psy4209 377 PRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQL--LLPFRRPLVVLTPKALLRHPQVRSTFEDL----SLDTKFRAY 450 (856)
Q Consensus 377 ~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i--~~~~~~P~i~~e~K~L~r~~~~~s~~~e~----~~~~~f~~~ 450 (856)
.+..+++..-+|=|+.||++.+++.+.+.+. .+.+.-||++=.-..+-.... ...+++. .....|..+
T Consensus 167 -----qdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~-~V~~~~~r~~~~~p~~f~~~ 240 (1186)
T PRK13029 167 -----HQSDHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTA-SVDLDPDRVDIVLPDDFVLP 240 (1186)
T ss_pred -----HHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecce-eeecCCcccccCCcccccCC
Confidence 1123455556777999999999998887764 466788998765554443322 1111110 001123222
Q ss_pred CC-------C----------------------cc-cc---cCCCCceEEEEcCCcHHHHHHHHHHHcCCC------CcEE
Q psy4209 451 LP-------D----------------------TM-AD---RNKDKVEKYILCSGKIYYDLIEARDAANLT------EQIA 491 (856)
Q Consensus 451 i~-------~----------------------a~-~~---~~~~~v~tvv~~~g~v~~~l~~a~~~~~~~------~~ve 491 (856)
.+ + +. +. ..+.+-+.-|.++|+.|.++..|....|.. ..+.
T Consensus 241 ~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ 320 (1186)
T PRK13029 241 PGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIR 320 (1186)
T ss_pred ccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCC
Confidence 21 0 00 00 011122234556888888888777665631 1388
Q ss_pred EEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhhC--CCCeEEecCCC
Q psy4209 492 IARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEIT--TDPVCYIGRDP 557 (856)
Q Consensus 492 vi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~~i~~~i~~~~~~~--~~~~~~vgr~~ 557 (856)
|..|-..+|||.+.|.+-++.... ++||+|- -.+|..+|.+.+... ..++..+|+.+
T Consensus 321 ilKvgm~~PL~~~~i~~Fa~g~d~---vlVVEE~------~p~iE~qlk~~l~~~~~~~rp~v~GK~~ 379 (1186)
T PRK13029 321 LLKVGCVWPLDPQSVREFAQGLEE---VLVVEEK------RAVIEYQLKEELYNWREDVRPAIFGKFD 379 (1186)
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCE---EEEEecC------chHHHHHHHHHHhhccCCcCCeeEeccc
Confidence 999999999999999999998876 8888663 246888888877542 22246788875
No 112
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.38 E-value=0.34 Score=58.45 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=50.1
Q ss_pred CccCcEEEEEEcCCceecc------C-CCC--ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEE
Q psy4209 7 YNTHGTIHIIINNQVGFTA------N-PWE--TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAF 77 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT------~-~~~--~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvl 77 (856)
|...=+++|+.||.||+.. . ... .....+...+|++||+++++| .+++++..+.++|++ . +.++|+|
T Consensus 451 ~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v--~~~~el~~al~~a~~-~-~~~~p~l 526 (575)
T TIGR02720 451 YHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRV--NKIEQLPAVFEQAKA-I-KQGKPVL 526 (575)
T ss_pred hCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEe--CCHHHHHHHHHHHHh-h-CCCCcEE
Confidence 3444455666777799632 1 010 012345789999999999999 567888888888876 3 4589999
Q ss_pred EEEee
Q psy4209 78 IDIIG 82 (856)
Q Consensus 78 Ie~~t 82 (856)
||+.+
T Consensus 527 iev~i 531 (575)
T TIGR02720 527 IDAKI 531 (575)
T ss_pred EEEEe
Confidence 99988
No 113
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.29 E-value=0.34 Score=58.25 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=46.8
Q ss_pred cEEEEEEcCC-ceeccCC------C-----CccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEE
Q psy4209 11 GTIHIIINNQ-VGFTANP------W-----ETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFI 78 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~~------~-----~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlI 78 (856)
.+++||.||+ ||+.... . ..........+|++||+++++|+ +++++..+.++|++ .++|+||
T Consensus 465 pvi~vV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lI 538 (564)
T PRK08155 465 DVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALI 538 (564)
T ss_pred CeEEEEEeCCcccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEE
Confidence 4677777776 8874310 0 01122457889999999999887 47777666666654 5789999
Q ss_pred EEeee
Q psy4209 79 DIIGY 83 (856)
Q Consensus 79 e~~tY 83 (856)
|+.+=
T Consensus 539 eV~~~ 543 (564)
T PRK08155 539 HVRID 543 (564)
T ss_pred EEEeC
Confidence 99983
No 114
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=92.26 E-value=0.31 Score=58.71 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=34.8
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.....+|++||+++++|+. ++++..+.+.| .+.+||+|||+.+-+
T Consensus 505 ~d~~~~A~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~lieV~vd~ 549 (571)
T PRK07710 505 PDFVKLAEAYGIKGVRIDD--ELEAKEQLQHA----IELQEPVVIDCRVLQ 549 (571)
T ss_pred CCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HhCCCCEEEEEEecC
Confidence 4678899999999999976 55555555444 456899999999964
No 115
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=92.17 E-value=0.4 Score=52.62 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=36.3
Q ss_pred hhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 35 YCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 35 ~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
++..+|+++|++++ +..-.+++++..+.++|++ .+||+|||+.+-
T Consensus 156 D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~----~~Gp~lIeV~~~ 201 (277)
T PRK09628 156 DACKLATAAGASFVARESVIDPQKLEKLLVKGFS----HKGFSFFDVFSN 201 (277)
T ss_pred CHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh----CCCCEEEEEcCC
Confidence 45889999999986 4555689999888888875 589999999753
No 116
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.09 E-value=1.2 Score=49.29 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=39.4
Q ss_pred chhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.++..+|.++|++.+ +++-.|+..+.+++++|.+ .+||.||++.+-
T Consensus 165 kd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sP 211 (299)
T PRK11865 165 KNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQP 211 (299)
T ss_pred CCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 457788999999987 6798999999999999886 589999998764
No 117
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=91.73 E-value=0.7 Score=47.82 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=36.8
Q ss_pred chhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+...+|+++|++.+ ++.-.++.++..+.++|++ .++|++||+.+
T Consensus 138 ~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 138 FNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred CCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 357889999999985 3466789999888888875 58899999974
No 118
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.59 E-value=0.43 Score=57.74 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=41.7
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.+....|++||+++.+| .+++++..|.++|++...+.+||+|||+.+-
T Consensus 509 ~df~~lA~a~G~~~~~v--~~~~eL~~al~~a~~~~~~~~gp~lieV~v~ 556 (591)
T PRK11269 509 VDHVKVAEGLGCKAIRV--FKPEDIAPALEQAKALMAEFRVPVVVEVILE 556 (591)
T ss_pred CCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 45788999999999998 6799999999999877666789999999984
No 119
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.52 E-value=0.42 Score=57.62 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=46.0
Q ss_pred EEEEEEcCC-ceeccCC---------C-CccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 12 TIHIIINNQ-VGFTANP---------W-ETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 12 vIfvveNNq-yg~sT~~---------~-~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
++|||.||+ ||+.... . ......+.+.+|++||+++.+| ++++++..+.+.|.+ .+||+|||+
T Consensus 469 i~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v--~~~~~l~~al~~a~~----~~~p~liev 542 (570)
T PRK06725 469 VKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA--TNSTEAKQVMLEAFA----HEGPVVVDF 542 (570)
T ss_pred eEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe--CCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 667777766 6653210 0 0111346789999999999999 588887777766654 589999999
Q ss_pred eee
Q psy4209 81 IGY 83 (856)
Q Consensus 81 ~tY 83 (856)
.+=
T Consensus 543 ~id 545 (570)
T PRK06725 543 CVE 545 (570)
T ss_pred EeC
Confidence 983
No 120
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.47 E-value=0.49 Score=56.95 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=36.1
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.....+|++||+++++|+ +++++..+.++|++. .++|+|||+.+=|
T Consensus 502 ~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 502 PDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred CCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 457889999999999985 466777777776653 3689999999854
No 121
>PRK06154 hypothetical protein; Provisional
Probab=91.32 E-value=0.53 Score=56.71 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=39.3
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+...+|++||+++++|+ +++++..+.++|+++.+. ++|+|||+.+
T Consensus 509 ~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~-~~p~lIev~v 554 (565)
T PRK06154 509 GDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKE-GTPALLEVIT 554 (565)
T ss_pred CCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccC-CCeEEEEEEe
Confidence 357889999999999997 689999999998876544 6799999987
No 122
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=91.30 E-value=1.2 Score=50.89 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=46.9
Q ss_pred cEEEEEEcCC-ceeccCCCCccccchhhhhhhhcCCc-EEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 11 GTIHIIINNQ-VGFTANPWETRSSMYCTCVAKVIGAP-VFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 11 GvIfvveNNq-yg~sT~~~~~~s~~~~sdrAk~~gip-~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+++||-||+ |+.+-..........+..+|+++|.. +++ .++++++..+.++|. +.+||+|||+.+-.
T Consensus 268 nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~--v~~~~eL~~al~~a~----~~~gp~lIeV~v~~ 337 (361)
T TIGR03297 268 NLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYE--VSTLEELETALTAAS----SANGPRLIEVKVRP 337 (361)
T ss_pred CeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEE--eCCHHHHHHHHHHHH----hCCCcEEEEEEecC
Confidence 5788888877 45432111111235688999999974 554 578999988888875 34789999999743
No 123
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=91.27 E-value=0.32 Score=58.82 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=40.1
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.++..+|++||+++++|+ +++++..+.++|++.. +.+||+|||+.+=|
T Consensus 516 ~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~ 563 (588)
T PRK07525 516 VSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQ 563 (588)
T ss_pred CCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecc
Confidence 467889999999999995 7889999999988764 34689999999843
No 124
>PRK08322 acetolactate synthase; Reviewed
Probab=91.18 E-value=0.51 Score=56.40 Aligned_cols=71 Identities=13% Similarity=0.010 Sum_probs=51.3
Q ss_pred CccCcEEEEEEcCCceeccC------CCC---ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEE
Q psy4209 7 YNTHGTIHIIINNQVGFTAN------PWE---TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAF 77 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~------~~~---~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvl 77 (856)
|...-+++|+.|++||+-.. ... .....+...+|++||+++++| .+++++..+.++|++ .++|+|
T Consensus 449 ~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v--~~~~eL~~al~~a~~----~~~p~l 522 (547)
T PRK08322 449 LGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRV--ESADDLLPTLEEALA----QPGVHV 522 (547)
T ss_pred hCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEe--CCHHHHHHHHHHHHh----CCCCEE
Confidence 55666777888888986421 000 011346788999999999999 568888888887764 479999
Q ss_pred EEEeee
Q psy4209 78 IDIIGY 83 (856)
Q Consensus 78 Ie~~tY 83 (856)
||+.+-
T Consensus 523 Iev~v~ 528 (547)
T PRK08322 523 IDCPVD 528 (547)
T ss_pred EEEEec
Confidence 999984
No 125
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.05 E-value=0.56 Score=56.71 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=35.5
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.+...+|++||+++++|+. ++++..+.++|++ .+||+|||+.+=
T Consensus 512 ~d~~~la~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~liev~v~ 555 (585)
T CHL00099 512 PDFVKLAEAYGIKGLRIKS--RKDLKSSLKEALD----YDGPVLIDCQVI 555 (585)
T ss_pred CCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 4578899999999999964 7777666666654 679999999983
No 126
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=90.66 E-value=0.33 Score=58.75 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=40.2
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+....|++||+.+.+| .+++++..|.++|++.+++.++|+|||+.+
T Consensus 508 ~d~~~lA~a~G~~~~~V--~~~~eL~~al~~a~~~~~~~~~p~lIeV~i 554 (588)
T TIGR01504 508 VDHVKVAEGLGCKAIRV--FKPEEIAPAFEQAKALMAEHRVPVVVEVIL 554 (588)
T ss_pred CCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 35688999999999999 568899888888887665568999999998
No 127
>PRK07064 hypothetical protein; Provisional
Probab=90.20 E-value=0.62 Score=55.63 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=49.3
Q ss_pred CccCcEEEEEEcCCceeccCC----------CCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcE
Q psy4209 7 YNTHGTIHIIINNQVGFTANP----------WETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDA 76 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~----------~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPv 76 (856)
|...=+++|+.|++||+-... ...........+|++||+++.+|+ .++++..+.++|++ .+||+
T Consensus 448 ~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~ 521 (544)
T PRK07064 448 ENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPV 521 (544)
T ss_pred hCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCE
Confidence 445445666666778864310 001113457889999999999985 68888888887764 57899
Q ss_pred EEEEeee
Q psy4209 77 FIDIIGY 83 (856)
Q Consensus 77 lIe~~tY 83 (856)
|||+.++
T Consensus 522 lIeV~~~ 528 (544)
T PRK07064 522 LVEVDML 528 (544)
T ss_pred EEEEEcc
Confidence 9999986
No 128
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=90.04 E-value=0.7 Score=55.75 Aligned_cols=74 Identities=22% Similarity=0.166 Sum_probs=51.4
Q ss_pred CccCcEEEEEEcCCceeccC-----CC----C--ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCc
Q psy4209 7 YNTHGTIHIIINNQVGFTAN-----PW----E--TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRD 75 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~-----~~----~--~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gP 75 (856)
|...-+++|+.|++||+-.. .. . .....+...+|++||+++++| .+++++..+.++|++.. +.++|
T Consensus 473 ~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v--~~~~el~~al~~a~~~~-~~~~p 549 (579)
T TIGR03457 473 HDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVV--DKPEDVGPALKKAIAAQ-AEGKT 549 (579)
T ss_pred hCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHhhC-CCCCc
Confidence 34444566666677886321 00 0 011136788999999999988 67889999999988754 34689
Q ss_pred EEEEEeee
Q psy4209 76 AFIDIIGY 83 (856)
Q Consensus 76 vlIe~~tY 83 (856)
+|||+.+=
T Consensus 550 ~lieV~v~ 557 (579)
T TIGR03457 550 TVIEIVCT 557 (579)
T ss_pred EEEEEEeC
Confidence 99999983
No 129
>PRK07586 hypothetical protein; Validated
Probab=89.99 E-value=0.62 Score=55.29 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=34.7
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+...+|++||+++++|+ ++.+...+.++|++ .++|+|||+.+
T Consensus 472 ~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 472 LDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 357889999999999995 57788777777753 57999999863
No 130
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=89.38 E-value=1.1 Score=54.02 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=48.6
Q ss_pred CccCcEEEEEEcCCceeccC------C-CCcc--ccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEE
Q psy4209 7 YNTHGTIHIIINNQVGFTAN------P-WETR--SSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAF 77 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~------~-~~~~--s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvl 77 (856)
|...=+++|+.|++||+.-. . .... ...+...+|++||+++++|+ +++++..+.++|++ .+||+|
T Consensus 451 ~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~l 524 (574)
T PRK09124 451 LKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPAL 524 (574)
T ss_pred hCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEE
Confidence 44444566666667887521 0 0011 12357889999999999985 68888777777764 478999
Q ss_pred EEEeee
Q psy4209 78 IDIIGY 83 (856)
Q Consensus 78 Ie~~tY 83 (856)
||+.+=
T Consensus 525 Iev~i~ 530 (574)
T PRK09124 525 VDVVTA 530 (574)
T ss_pred EEEEec
Confidence 999883
No 131
>PRK08611 pyruvate oxidase; Provisional
Probab=89.31 E-value=0.92 Score=54.75 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=49.7
Q ss_pred CccCcEEEEEEcCCceecc-----CC--C--CccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEE
Q psy4209 7 YNTHGTIHIIINNQVGFTA-----NP--W--ETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAF 77 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT-----~~--~--~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvl 77 (856)
|...-+++|+.||.||+-- .. . ......+....|++||+++++| .+++++..+.++|. +.+||++
T Consensus 451 ~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v--~~~~eL~~al~~a~----~~~~p~l 524 (576)
T PRK08611 451 YKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRV--EKAEELDPAFEEAL----AQDKPVI 524 (576)
T ss_pred hCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe--CCHHHHHHHHHHHH----hCCCCEE
Confidence 4555567777777888631 00 0 0112346788999999999998 56777777777665 4589999
Q ss_pred EEEeeec
Q psy4209 78 IDIIGYR 84 (856)
Q Consensus 78 Ie~~tYR 84 (856)
||+.+-+
T Consensus 525 IeV~vd~ 531 (576)
T PRK08611 525 IDVYVDP 531 (576)
T ss_pred EEEEeCC
Confidence 9999964
No 132
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.12 E-value=1.1 Score=53.65 Aligned_cols=70 Identities=24% Similarity=0.198 Sum_probs=48.0
Q ss_pred ccCcEEEEEEcCCceeccC-------CCCc--cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEE
Q psy4209 8 NTHGTIHIIINNQVGFTAN-------PWET--RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFI 78 (856)
Q Consensus 8 ~~gGvIfvveNNqyg~sT~-------~~~~--~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlI 78 (856)
...=+++|+.|++||+--. .... ....+....|++||+++++|+ +++++..+.++|.+ .+||+||
T Consensus 441 ~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lI 514 (549)
T PRK06457 441 DLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVL 514 (549)
T ss_pred CCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEE
Confidence 3344566666677875311 0000 112457889999999999986 68888888777764 5789999
Q ss_pred EEeee
Q psy4209 79 DIIGY 83 (856)
Q Consensus 79 e~~tY 83 (856)
|+.+-
T Consensus 515 eV~i~ 519 (549)
T PRK06457 515 DAIVD 519 (549)
T ss_pred EEEeC
Confidence 99984
No 133
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.03 E-value=0.79 Score=55.25 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=50.9
Q ss_pred CccCcEEEEEEcCCceeccC---------CCCc--cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCc
Q psy4209 7 YNTHGTIHIIINNQVGFTAN---------PWET--RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRD 75 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~---------~~~~--~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gP 75 (856)
|...-+++|+.|++||+-.. .... ....+...+|++||+++++| .+++++..+.++|++.++. ++|
T Consensus 464 ~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v--~~~~eL~~al~~a~~~~~~-~~p 540 (574)
T PRK07979 464 YELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQI--SHPDELESKLSEALEQVRN-NRL 540 (574)
T ss_pred hCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHhccCC-CCc
Confidence 44454566666666775221 0101 12245788999999999998 5788888888888876543 689
Q ss_pred EEEEEeee
Q psy4209 76 AFIDIIGY 83 (856)
Q Consensus 76 vlIe~~tY 83 (856)
+|||+.+=
T Consensus 541 ~lIeV~i~ 548 (574)
T PRK07979 541 VFVDVTVD 548 (574)
T ss_pred EEEEEEEC
Confidence 99999984
No 134
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.94 E-value=1.1 Score=53.83 Aligned_cols=45 Identities=22% Similarity=0.128 Sum_probs=36.2
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+...+|++||+.+++|+ +++++..+.++|.+ .+||+|||+.+.+
T Consensus 495 ~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 495 PDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred CCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 357889999999999986 57777666666654 5789999999976
No 135
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=88.52 E-value=2.1 Score=47.59 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=36.9
Q ss_pred chhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.++..+|+++|++.+ ++...++.++..+.++|++ .+||+|||+.+
T Consensus 157 ~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~ 202 (301)
T PRK05778 157 IDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLS 202 (301)
T ss_pred CCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 367889999999986 5677799999888888875 58899999654
No 136
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.46 E-value=1.4 Score=48.55 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=36.8
Q ss_pred hhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 35 YCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 35 ~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
++.++|+++|++.+ +....|+.++.++.++|++ .+||.|||+.+
T Consensus 147 d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 147 NPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred CHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 67799999999865 4577899999888888875 58999999975
No 137
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.24 E-value=1.3 Score=48.76 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=38.2
Q ss_pred chhhhhhhhcCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVFH-VNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~-VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.++..+|+++|++.+. .+-.++.++.++.++|++ .+||+|||+.+.
T Consensus 147 ~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~p 193 (280)
T PRK11869 147 FNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQP 193 (280)
T ss_pred CCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 3678899999999776 347899999999998885 489999999753
No 138
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.79 E-value=0.76 Score=55.94 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=37.0
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.+...+|+++|+.+++|+ +++++..|.++|.+ .++|+|||+.+.
T Consensus 516 ~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~ 559 (616)
T PRK07418 516 PDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVR 559 (616)
T ss_pred CCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 457889999999999996 78888777777764 578999999985
No 139
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=86.76 E-value=1.7 Score=52.05 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=49.4
Q ss_pred CccCcEEEEEEcCCceeccC------C-C-Ccc---ccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCc
Q psy4209 7 YNTHGTIHIIINNQVGFTAN------P-W-ETR---SSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRD 75 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~------~-~-~~~---s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gP 75 (856)
|...=+++|+.||+||+-.. . . ... ...+....|++||+++.+| .+++++..+.++|++ .++|
T Consensus 444 ~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v--~~~~el~~al~~a~~----~~~p 517 (548)
T PRK08978 444 KQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTI--TRKDQVEAALDTLLN----SEGP 517 (548)
T ss_pred hCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCC
Confidence 44555666666777875321 0 0 001 1245788999999999999 568888777777764 5789
Q ss_pred EEEEEeeec
Q psy4209 76 AFIDIIGYR 84 (856)
Q Consensus 76 vlIe~~tYR 84 (856)
+|||+.+=+
T Consensus 518 ~lIeV~id~ 526 (548)
T PRK08978 518 YLLHVSIDE 526 (548)
T ss_pred EEEEEEecC
Confidence 999999854
No 140
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=86.57 E-value=2 Score=51.65 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=35.8
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.....+|++||+++++| .+++++..+.++|++ .+||+|||+.+
T Consensus 495 ~df~~la~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIev~i 537 (554)
T TIGR03254 495 ARYDKMMKAFGGVGYNV--TTPDELKAALNEALA----SGKPTLINAVI 537 (554)
T ss_pred CCHHHHHHHCCCeEEEe--CCHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 35688999999999999 568888888887763 47899999987
No 141
>PLN02470 acetolactate synthase
Probab=86.52 E-value=2 Score=52.06 Aligned_cols=44 Identities=11% Similarity=0.000 Sum_probs=36.7
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.+...+|++||+++.+| .+++++..|.++|.+ -++|+|||+.+=
T Consensus 514 ~d~~~iA~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lieV~i~ 557 (585)
T PLN02470 514 PDFLKFAEGCKIPAARV--TRKSDLREAIQKMLD----TPGPYLLDVIVP 557 (585)
T ss_pred CCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 46788999999999998 468888888888765 478999999984
No 142
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=86.44 E-value=1.8 Score=52.40 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=35.6
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.....+|+++|+.++.| .+++++..+.++|++ .++|+|||+.+
T Consensus 500 ~d~~~la~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIeV~i 542 (586)
T PRK06276 500 PDFVKLAESYGVKADRV--EKPDEIKEALKEAIK----SGEPYLLDIII 542 (586)
T ss_pred CCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 35788999999999888 568888888777763 47899999998
No 143
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=86.20 E-value=1.8 Score=52.42 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=36.5
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+...+|++||+++++|. +++++..+.++|.+ .++|+|||+.+-+
T Consensus 503 ~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 503 VPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred CCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 347899999999999887 57788777777764 4899999999844
No 144
>PRK05858 hypothetical protein; Provisional
Probab=86.10 E-value=1.9 Score=51.61 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=47.0
Q ss_pred CccCcEEEEEEcCCceeccC-CC---------CccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcE
Q psy4209 7 YNTHGTIHIIINNQVGFTAN-PW---------ETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDA 76 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~-~~---------~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPv 76 (856)
|...=+++|+.|+.||+--. .. ......+...+|++||+++.+|+- +++...+.++|++ .++|+
T Consensus 450 ~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~eL~~al~~a~~----~~~p~ 523 (542)
T PRK05858 450 HNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELVTV--PAELGPALERAFA----SGVPY 523 (542)
T ss_pred cCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHHh----CCCcE
Confidence 33433566666667876221 00 011234678899999999999974 6677777777764 57999
Q ss_pred EEEEee
Q psy4209 77 FIDIIG 82 (856)
Q Consensus 77 lIe~~t 82 (856)
|||+.+
T Consensus 524 lIev~~ 529 (542)
T PRK05858 524 LVNVLT 529 (542)
T ss_pred EEEEEE
Confidence 999998
No 145
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.98 E-value=1.7 Score=52.74 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=37.7
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+...+|++||+.+++| .+++++-.+.++|.+ -++|+|||+.+-+
T Consensus 511 ~d~~~lA~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 511 PDFVKLAEAYGAVGIRC--EKPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred CCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 45788999999999999 678888888877765 4789999999864
No 146
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=85.19 E-value=2.3 Score=51.82 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=50.2
Q ss_pred CccCcEEEEEEcCCceeccC---------CC--C-cc---ccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHc
Q psy4209 7 YNTHGTIHIIINNQVGFTAN---------PW--E-TR---SSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQT 71 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~---------~~--~-~~---s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~ 71 (856)
|...-+++|+.|++||+--. .. . .. ...+...+|++||+++++| .+++++..+.++|++.
T Consensus 490 ~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~a~~~--- 564 (612)
T PRK07789 490 EGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRC--EREEDVDAVIEKARAI--- 564 (612)
T ss_pred cCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHhc---
Confidence 45555667777777885321 00 0 00 1135788999999999998 5688888888888764
Q ss_pred cCCcEEEEEeee
Q psy4209 72 FKRDAFIDIIGY 83 (856)
Q Consensus 72 g~gPvlIe~~tY 83 (856)
-++|+|||+.+-
T Consensus 565 ~~~p~lIev~i~ 576 (612)
T PRK07789 565 NDRPVVIDFVVG 576 (612)
T ss_pred CCCcEEEEEEEC
Confidence 268999999984
No 147
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=85.13 E-value=2.1 Score=51.65 Aligned_cols=72 Identities=18% Similarity=0.063 Sum_probs=49.4
Q ss_pred CccCcEEEEEEcCCceeccCC------C-----CccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCc
Q psy4209 7 YNTHGTIHIIINNQVGFTANP------W-----ETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRD 75 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~------~-----~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gP 75 (856)
|...=+|+|+.|++||+.... . +.....+...+|++||+.+++| .+++++..+.++|.+ .++|
T Consensus 464 ~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v--~~~~eL~~al~~a~~----~~~p 537 (572)
T PRK06456 464 EHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV--TTYEDIEKSLKSAIK----EDIP 537 (572)
T ss_pred hCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe--CCHHHHHHHHHHHHh----CCCC
Confidence 445556666666678864310 0 0012246789999999999988 468887777777653 4789
Q ss_pred EEEEEeeec
Q psy4209 76 AFIDIIGYR 84 (856)
Q Consensus 76 vlIe~~tYR 84 (856)
+|||+.+-+
T Consensus 538 ~lIev~v~~ 546 (572)
T PRK06456 538 AVIRVPVDK 546 (572)
T ss_pred EEEEEEeCc
Confidence 999999865
No 148
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=84.96 E-value=2.3 Score=51.27 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=35.8
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+...+|++||+++++| .+++++..+.++|++ .+||+|||+.+
T Consensus 503 ~d~~~lA~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIev~i 545 (569)
T PRK09259 503 ARYDKMMEAFGGVGYNV--TTPDELRHALTEAIA----SGKPTLINVVI 545 (569)
T ss_pred CCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 35688999999999998 468888888888764 57899999998
No 149
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=84.75 E-value=3 Score=49.92 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=47.3
Q ss_pred ccCcEEEEEEcCCceeccC-----CCC----ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEE
Q psy4209 8 NTHGTIHIIINNQVGFTAN-----PWE----TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFI 78 (856)
Q Consensus 8 ~~gGvIfvveNNqyg~sT~-----~~~----~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlI 78 (856)
..-=+++|+.||.||+--. ... .....+...+|++||+++.+|+- ++++..+.++|.+ .++|+||
T Consensus 452 ~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~--~~eL~~al~~a~~----~~~p~lI 525 (539)
T TIGR02418 452 KLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVES--PDQLEPTLRQAME----VEGPVVV 525 (539)
T ss_pred CCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEE
Confidence 3334566666677886311 010 01134578899999999998864 7777777777654 5789999
Q ss_pred EEeeec
Q psy4209 79 DIIGYR 84 (856)
Q Consensus 79 e~~tYR 84 (856)
|+.+-+
T Consensus 526 ev~v~~ 531 (539)
T TIGR02418 526 DIPVDY 531 (539)
T ss_pred EEEecC
Confidence 999853
No 150
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=84.56 E-value=2.8 Score=50.21 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=46.8
Q ss_pred CccCcEEEEEEcCCceeccCCC------CccccchhhhhhhhcCCc----EEEEeCCCHHHHHHHHHHHHHHHHccCCcE
Q psy4209 7 YNTHGTIHIIINNQVGFTANPW------ETRSSMYCTCVAKVIGAP----VFHVNADEPEVVVSIMKLLARYRQTFKRDA 76 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~------~~~s~~~~sdrAk~~gip----~~~VDG~D~~aV~~a~~~Av~~~R~g~gPv 76 (856)
|..-=+++|+.||+||+-.... ..........+|++||++ +++| .++.++..+.++|. +.+||+
T Consensus 447 ~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v--~~~~el~~al~~a~----~~~~p~ 520 (539)
T TIGR03393 447 DKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRV--SEAEQLADVLEKVA----AHERLS 520 (539)
T ss_pred cCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEe--ccHHHHHHHHHHHh----ccCCeE
Confidence 3344467777778888632110 011224578899999996 6777 56777777777665 457899
Q ss_pred EEEEee
Q psy4209 77 FIDIIG 82 (856)
Q Consensus 77 lIe~~t 82 (856)
|||+.+
T Consensus 521 liev~i 526 (539)
T TIGR03393 521 LIEVVL 526 (539)
T ss_pred EEEEEc
Confidence 999987
No 151
>PRK12474 hypothetical protein; Provisional
Probab=84.22 E-value=2.5 Score=50.32 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=34.6
Q ss_pred hhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 35 YCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 35 ~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
+...+|++||+++.+|+- ++++..+.++|++ .++|+|||+.+
T Consensus 477 d~~~lA~a~G~~~~rv~~--~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 477 NWMKIAEGLGVEASRATT--AEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CHHHHHHHCCCeEEEeCC--HHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 568899999999999975 7788777777753 57999999864
No 152
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.04 E-value=3.2 Score=50.22 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=36.8
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.+...+|++||+++++| .++.++..+.++|++. -++|+|||+.+=
T Consensus 518 ~d~~~iA~a~G~~~~~v--~~~~eL~~al~~a~~~---~~~p~lieV~i~ 562 (587)
T PRK06965 518 PDFVKLAEAYGHVGMRI--EKTSDVEPALREALRL---KDRTVFLDFQTD 562 (587)
T ss_pred CCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHhc---CCCcEEEEEEec
Confidence 45788999999999998 4688888888888763 258999999983
No 153
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=82.92 E-value=2.2 Score=51.36 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=35.2
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+....|++||+++++| .+++++..+.++|+ +.+||+|||+.+
T Consensus 506 ~df~~lA~a~G~~~~~V--~~~~eL~~al~~a~----~~~~p~lIev~i 548 (568)
T PRK07449 506 VDFAHAAAMYGLEYHRP--ETWAELEEALADAL----PTPGLTVIEVKT 548 (568)
T ss_pred CCHHHHHHHcCCCccCC--CCHHHHHHHHHHHh----cCCCCEEEEEeC
Confidence 45788999999999888 56888888877775 357899999986
No 154
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.52 E-value=3.2 Score=50.10 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=36.8
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+....|++||+++.+| .+++++..+.++|++. -++|+|||+.+=+
T Consensus 504 ~d~~~lA~a~G~~~~~v--~~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 504 PDFVKLAEAYGHVGIRI--TDLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred CCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 45788999999999998 5688888888777752 2789999999843
No 155
>PRK08617 acetolactate synthase; Reviewed
Probab=82.36 E-value=4 Score=48.95 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=35.3
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+...+|++||+++.+|. +++++..+.++|+ +.++|+|||+.+-|
T Consensus 493 ~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~liev~~~~ 537 (552)
T PRK08617 493 VDFVKYAESFGAKGLRVT--SPDELEPVLREAL----ATDGPVVIDIPVDY 537 (552)
T ss_pred CCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCcEEEEEEecc
Confidence 457889999999998875 5777777776665 45789999999854
No 156
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=81.93 E-value=8.3 Score=42.61 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=35.2
Q ss_pred hhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 35 YCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 35 ~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
....+|.++|...+ ++.-.++.++..+.++|++ .+||+|||+..
T Consensus 157 d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 157 NPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred CHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 46778999999866 4567789999888888875 57899999973
No 157
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=81.64 E-value=6.5 Score=39.49 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=67.1
Q ss_pred cEEEccCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCC---C-c
Q psy4209 284 FHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQ---G-P 359 (856)
Q Consensus 284 ~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~---G-p 359 (856)
+|.+ ..-.|....|++.|+.+.|-++++ =+|-.-..| +. |=++++. -..+.||+++. |+.|. . +
T Consensus 35 i~~i-~~~~ee~aa~~aAg~~~~~~~~~v--~~~~sG~gn-~~----~~l~~a~--~~~~~Pvl~i~--g~rg~~~~~~~ 102 (157)
T TIGR03845 35 FRHI-PLTREEEGVGICAGAYLAGKKPAI--LMQSSGLGN-SI----NALASLN--KTYGIPLPILA--SWRGVYKEKIP 102 (157)
T ss_pred CcEE-ecCChHHHHHHHHHHHHhcCCcEE--EEeCCcHHH-HH----HHHHHHH--HcCCCCEEEEE--eccCCCCCCCc
Confidence 5543 255777788899999999988887 444433332 21 2222222 13368999886 33222 1 1
Q ss_pred cCC--CCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC--CCCCcEEEEecccc
Q psy4209 360 EHS--SARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL--PFRRPLVVLTPKAL 428 (856)
Q Consensus 360 ~HS--sar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~--~~~~P~i~~e~K~L 428 (856)
.|. ....|..||.+ ++.....++|+|+ ..+.++++. ..+.|+.++-+|++
T Consensus 103 ~q~~~g~~~~~~l~~~------------------~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~~ 156 (157)
T TIGR03845 103 AQIPMGRATPKLLDTL------------------GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPKY 156 (157)
T ss_pred cccchhhhhHHHHHHc------------------CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 111 11123333321 2235555779999 999998852 44699999999876
No 158
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=81.53 E-value=1e+02 Score=38.12 Aligned_cols=146 Identities=23% Similarity=0.248 Sum_probs=81.6
Q ss_pred CCeEEEeeccCCCCccc----ccceeeeecCCCCEeecCccc----ccccCCcEEEccCcchHHHHH----HHhhhccCC
Q psy4209 240 GHHIRLIGQDSKRGTFS----HRHAVYFDQATGNTYTPLHHI----GAEAGKFHVYNSILNEMAALS----FEYGYSLVD 307 (856)
Q Consensus 240 g~~V~l~GeDv~~gtf~----~Rh~v~~d~~~gg~~~~~~~L----~~~~g~~rV~nspLsE~~i~G----~~~G~a~~g 307 (856)
|.+|+=+=-|+.| ||. -|-.-+|.+ .|-.|+|-..= +++--..+|.---|+|.+.+. .+.-||..|
T Consensus 512 g~riVpiipDear-Tfgmeg~f~q~GIy~~-~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~ 589 (887)
T COG2609 512 GKRIVPIIPDEAR-TFGMEGLFRQIGIYNP-NGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHG 589 (887)
T ss_pred CCccccccCchhh-hccchhhhhhcccccC-CCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCC
Confidence 4455555556544 221 111223333 35556665321 111123568888888887654 455566666
Q ss_pred C--Ccceeecccc-----hhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcch
Q psy4209 308 P--NFLVIWEAQF-----GDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCV 380 (856)
Q Consensus 308 ~--~~l~~wE~qf-----gDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~ 380 (856)
. -|+-|.=-|| ||-+|-|-+|--. | ..-|..++=+-+- |-|-+|-+. ..-|
T Consensus 590 ~pmiPfyi~YsmFgfqRigD~~waA~dq~AR----g-FLlgaTagrtTLn-----gEGlqHedg--hS~l---------- 647 (887)
T COG2609 590 EPMIPFYIYYSMFGFQRIGDLLWAAGDQDAR----G-FLLGATAGRTTLN-----GEGLQHEDG--HSHL---------- 647 (887)
T ss_pred ccceeeeeeechhhhhhHHHHHHHHHhhhhc----c-eeEeecCCCceeC-----ccccccccc--cchh----------
Confidence 4 4676778888 6777777655421 1 1222333333343 344444441 1112
Q ss_pred hhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC
Q psy4209 381 ELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL 414 (856)
Q Consensus 381 ~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~ 414 (856)
.-+.+||+.-.-|+-.+....+|+..+++
T Consensus 648 -----~~~~ip~~~tYdPafayEvAVI~~~g~~r 676 (887)
T COG2609 648 -----QAMTIPNCISYDPAFAYEVAVIMQDGLRR 676 (887)
T ss_pred -----hhhcCCCccccCchHHHHHHHHHHHHHHH
Confidence 22467999999999999999999988875
No 159
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=81.13 E-value=4.4 Score=48.81 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=35.5
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.+...+|++||+++++|+ ++++...+.++|++ .+||+|||+.+=+
T Consensus 495 ~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 495 VDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred CCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 457889999999998876 46777777777763 5799999999843
No 160
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=80.12 E-value=9.1 Score=37.87 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=67.8
Q ss_pred CcEEEccCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCccC-CCCCccC
Q psy4209 283 KFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI-EGQGPEH 361 (856)
Q Consensus 283 ~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~G~-~g~Gp~H 361 (856)
..+++.+- .|.+..+.+-||++.+.+ ++ =.+-|-=+..+...+- . -+..++||++....-. .+.+-.|
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~-v~--~~~~gpG~~n~~~~l~---~----a~~~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGAR-AM--TATSGPGLNLMAEALY---L----AAGAELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCc-EE--EeeCcchHHHHHHHHH---H----HHhCCCCEEEEEeeCCCCCCCCCC
Confidence 57787776 999999999999999877 54 2444443333333332 2 2223589999874311 2211101
Q ss_pred CCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC--CCCCcEEEEe
Q psy4209 362 SSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL--PFRRPLVVLT 424 (856)
Q Consensus 362 Ssar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~--~~~~P~i~~e 424 (856)
.. .+.+-| ..... |...+..+++|+++..+++++++. ..+.||+++-
T Consensus 110 ~~--~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PD--QSDLMA-------------ARYGG-HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cC--cHHHHH-------------HHhCC-CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 11 011111 11122 256777789999999999988762 3357998864
No 161
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=79.11 E-value=5.2 Score=48.32 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=48.0
Q ss_pred CccCcEEEEEEcCCceeccCC---------CCc--cccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCc
Q psy4209 7 YNTHGTIHIIINNQVGFTANP---------WET--RSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRD 75 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~---------~~~--~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gP 75 (856)
|...=+++|+.|++||+.... ... ....+...+|++||+++.+|+ ++.++..|.++|.+. -++|
T Consensus 464 ~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p 538 (572)
T PRK08979 464 YDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRL 538 (572)
T ss_pred cCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCc
Confidence 334445666666678764310 000 012457889999999999886 577877777777642 2789
Q ss_pred EEEEEeeec
Q psy4209 76 AFIDIIGYR 84 (856)
Q Consensus 76 vlIe~~tYR 84 (856)
+|||+.+=+
T Consensus 539 ~lIev~i~~ 547 (572)
T PRK08979 539 VFVDINVDE 547 (572)
T ss_pred EEEEEEeCC
Confidence 999999843
No 162
>PLN02573 pyruvate decarboxylase
Probab=77.98 E-value=6.9 Score=47.41 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=48.3
Q ss_pred CccCcEEEEEEcCCceeccCCC----CccccchhhhhhhhcC-----CcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEE
Q psy4209 7 YNTHGTIHIIINNQVGFTANPW----ETRSSMYCTCVAKVIG-----APVFHVNADEPEVVVSIMKLLARYRQTFKRDAF 77 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~~~----~~~s~~~~sdrAk~~g-----ip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvl 77 (856)
|...=+++|+.|+.||+-.... ..........+|++|| +++.+|+- +++...+.++|++. ..++|+|
T Consensus 471 ~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~--~~eL~~al~~a~~~--~~~~p~l 546 (578)
T PLN02573 471 CGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRT--EEELIEAIATATGE--KKDCLCF 546 (578)
T ss_pred cCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecC--HHHHHHHHHHHHhh--CCCCcEE
Confidence 3344466777777788643211 1112245788999985 89999875 77777777777642 2478999
Q ss_pred EEEee
Q psy4209 78 IDIIG 82 (856)
Q Consensus 78 Ie~~t 82 (856)
||+.+
T Consensus 547 ieV~v 551 (578)
T PLN02573 547 IEVIV 551 (578)
T ss_pred EEEEc
Confidence 99987
No 163
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=77.23 E-value=7.3 Score=46.72 Aligned_cols=70 Identities=10% Similarity=-0.025 Sum_probs=46.9
Q ss_pred ccCcEEEEEEcCCceeccCCCC-----ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 8 NTHGTIHIIINNQVGFTANPWE-----TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 8 ~~gGvIfvveNNqyg~sT~~~~-----~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
...=+++|+.|++||+-..... .....+....|++||+++++|+ +++++..+.++|.+ ..++|+|||+.+
T Consensus 446 ~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i 520 (535)
T TIGR03394 446 GIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAML 520 (535)
T ss_pred CCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEEC
Confidence 3444667777778886432111 1123456889999999998886 46777777777664 345689999986
No 164
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=75.57 E-value=6.6 Score=47.37 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=46.1
Q ss_pred CccCcEEEEEEcCCceeccC----------CCC-ccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCc
Q psy4209 7 YNTHGTIHIIINNQVGFTAN----------PWE-TRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRD 75 (856)
Q Consensus 7 y~~gGvIfvveNNqyg~sT~----------~~~-~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gP 75 (856)
|...=+++|+.|++||+-.. ... -....+...+|++||+.+.+|. ++.++..+.+ ++ . -++|
T Consensus 461 ~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~---~-~~~p 533 (566)
T PRK07282 461 YKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI---T-EDVP 533 (566)
T ss_pred hCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh---c-CCCC
Confidence 45555667777777886320 011 1123457889999999999986 5666665554 22 2 3789
Q ss_pred EEEEEeeec
Q psy4209 76 AFIDIIGYR 84 (856)
Q Consensus 76 vlIe~~tYR 84 (856)
+|||+.+=+
T Consensus 534 ~lIeV~v~~ 542 (566)
T PRK07282 534 MLIEVDISR 542 (566)
T ss_pred EEEEEEeCC
Confidence 999999844
No 165
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=75.49 E-value=9 Score=46.61 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=36.0
Q ss_pred chhhhhhhhcCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 34 MYCTCVAKVIGAPVFHVN-ADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VD-G~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
..+..+|+++|++..+|. -.|++++..+.++|.+ ..||++|++..
T Consensus 484 ~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 484 ISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred cCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 457899999999999885 4677777777777774 47899999854
No 166
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=74.14 E-value=6.1 Score=43.71 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=30.0
Q ss_pred hhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 37 TCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 37 sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
..+|.+++..... ...++.++..+.++|++ .+||+|||+.+
T Consensus 145 ~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 145 LAIALGYTFVARG-FSGDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred HHHhCCCCeEEEE-ecCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 3556666655443 33799999888888874 58999999975
No 167
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=71.45 E-value=6.3 Score=53.54 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=36.2
Q ss_pred chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 34 MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 34 ~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
.....+|++||+++++|+ +++++..|..+|. +.++|+|||+.|-|
T Consensus 846 ~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~----~~~~p~lIEV~t~~ 890 (1655)
T PLN02980 846 ISIENLCLAHGVRHLHVG--TKSELEDALFTSQ----VEQMDCVVEVESSI 890 (1655)
T ss_pred CCHHHHHHHcCCceeecC--CHHHHHHHHHHhh----ccCCCEEEEEecCh
Confidence 457899999999999997 5777777766655 45899999998743
No 168
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=67.29 E-value=12 Score=42.69 Aligned_cols=116 Identities=22% Similarity=0.202 Sum_probs=75.1
Q ss_pred CcchHHHHHHHhhhccC-CCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCCC--CccCCC-C
Q psy4209 290 ILNEMAALSFEYGYSLV-DPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEGQ--GPEHSS-A 364 (856)
Q Consensus 290 pLsE~~i~G~~~G~a~~-g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g~--Gp~HSs-a 364 (856)
.-.|..-+|++.||.|. |.+|++ =+|-.-+-| +.|-+.|.-.....+.||+++.-+ |..|. -|||.- .
T Consensus 32 ~~~E~~av~iaaG~~latG~~~~v--~mQnSGlGn-----~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G 104 (361)
T TIGR03297 32 AANEGAAVGLAAGAYLATGKRAAV--YMQNSGLGN-----AVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQG 104 (361)
T ss_pred cCCchHHHHHHHHHHHhcCCccEE--EEecCchhh-----hhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHh
Confidence 34599999999999999 999999 567766665 345566653333336788887654 44342 277765 2
Q ss_pred c-hhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC--CCCCcEEEEeccccc
Q psy4209 365 R-PERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL--PFRRPLVVLTPKALL 429 (856)
Q Consensus 365 r-~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~--~~~~P~i~~e~K~L~ 429 (856)
+ .++.|.. +.+|=..+ |.++.+....+.+++.. ...+|+.++-.|..+
T Consensus 105 ~~t~~lL~~---------------~~i~~~~~--~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 105 RITLSLLDA---------------LEIPWEVL--STDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred HHHHHHHHH---------------cCCCEEEC--CCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 2 2444432 23333222 46677777666666542 348999999999887
No 169
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=64.82 E-value=19 Score=41.18 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=38.0
Q ss_pred chhhhhhhhcCCcEE-EEeC-CCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVF-HVNA-DEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~-~VDG-~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.++..+|.++|++.+ ++-- -|+..+..++++|.++ +||.||++.+-
T Consensus 220 kd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~~----~Gps~I~v~sP 267 (365)
T cd03377 220 KDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYSP 267 (365)
T ss_pred cCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhcC----CCCEEEEEEcc
Confidence 457888999999976 5554 5999999999999875 89999999764
No 170
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=60.62 E-value=46 Score=34.31 Aligned_cols=117 Identities=22% Similarity=0.284 Sum_probs=58.9
Q ss_pred CCeEEEeeccCCCCcccccceeeeecCCCCEee--cCcccc-cccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecc
Q psy4209 240 GHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYT--PLHHIG-AEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEA 316 (856)
Q Consensus 240 g~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~--~~~~L~-~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~ 316 (856)
..+.||+|-| .|-|.|-..++|- ++..|. +...-. ........+.+.|||-.+-|+--||.+.|-..+. +
T Consensus 16 ~~nfRvf~PD---Et~SNrL~~v~e~-t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~LtGrhglf---~ 88 (179)
T PF03894_consen 16 PRNFRVFGPD---ETASNRLNAVFEV-TNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLTGRHGLF---A 88 (179)
T ss_dssp TTTEEEEESS----TTTTT-GGGGGT---EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHTT-EEEE---E
T ss_pred CCcceeECCC---cchhhchHHHHHh-cccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhcCCcccc---c
Confidence 4578999998 5678887777766 333331 111000 1112334557999999999999999999988775 3
Q ss_pred cchhhHHhHHHHHHHHH---Hh-hhhhcCCc-cCeEEEcC-ccCC--CCCccCCC
Q psy4209 317 QFGDFANNAQAVFDQWI---SS-ARSKWNID-SGLVLLLP-HGIE--GQGPEHSS 363 (856)
Q Consensus 317 qfgDF~~~A~~~id~~~---a~-~~~kw~~~-~~lv~~lP-~G~~--g~Gp~HSs 363 (856)
-|--|+-.---++.|++ -. .+..|... .+|.+++- |.++ --|-.|-.
T Consensus 89 sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQd 143 (179)
T PF03894_consen 89 SYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQD 143 (179)
T ss_dssp EEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG--
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCC
Confidence 34445543333344433 22 35667765 44665554 5553 33444443
No 171
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=53.48 E-value=24 Score=39.51 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=56.6
Q ss_pred cEEEEEEcCCc---------eeccCCCCcccc------------chhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHH
Q psy4209 11 GTIHIIINNQV---------GFTANPWETRSS------------MYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYR 69 (856)
Q Consensus 11 GvIfvveNNqy---------g~sT~~~~~~s~------------~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~ 69 (856)
.-|||+.||-| ||.....-+.+- -+-...+.+.|+..++| .+|++...|...|....
T Consensus 465 pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv--~~p~e~a~af~~a~~lm 542 (592)
T COG3960 465 PYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--FKPEDIAPAFEQAKALM 542 (592)
T ss_pred ceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEe--cChHHhhHHHHHHHHHH
Confidence 35899999988 444432222211 11234455566666666 57888999999999999
Q ss_pred HccCCcEEEEEeeecCCCCCCCC
Q psy4209 70 QTFKRDAFIDIIGYRRHGHNEGD 92 (856)
Q Consensus 70 R~g~gPvlIe~~tYR~~GHse~D 92 (856)
....-|+++|++--|...-+++-
T Consensus 543 ~eh~vpvvve~ilervtnismgt 565 (592)
T COG3960 543 AQHRVPVVVEVILERVTNISMGT 565 (592)
T ss_pred HhcCCCeeeehHHHHhhcccccc
Confidence 99999999999998887666654
No 172
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=52.93 E-value=9.1 Score=41.75 Aligned_cols=35 Identities=9% Similarity=0.282 Sum_probs=26.1
Q ss_pred CCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 44 GAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 44 gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
|+..+ -|||+|++++.++.+.+. +-+||+||+++|
T Consensus 235 G~~Y~GPiDGHdl~~Li~~l~~~K----~~~gPvllHV~T 270 (270)
T PF13292_consen 235 GFDYIGPIDGHDLEELIEVLENAK----DIDGPVLLHVIT 270 (270)
T ss_dssp T-EEEEEEETT-HHHHHHHHHHHC----CSSSEEEEEEE-
T ss_pred CCeEEeccCCCCHHHHHHHHHHHh----cCCCCEEEEEeC
Confidence 55555 489999999998877665 469999999987
No 173
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=50.17 E-value=19 Score=43.56 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=56.6
Q ss_pred ccCcEEEEEEcCCceeccCCCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCC
Q psy4209 8 NTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHG 87 (856)
Q Consensus 8 ~~gGvIfvveNNqyg~sT~~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~G 87 (856)
.+||+|.|+-+ .+|+.++..+|.+-. .++...||++ |=-||.++++.++.|.+.-++++-||++-+.| +.+
T Consensus 108 v~GGlviv~aD-Dpg~~SSqneqdsr~----y~~~a~iPvL--eP~d~Qea~d~~~~afelSe~~~~pVilr~tt--r~~ 178 (640)
T COG4231 108 VTGGLVIVVAD-DPGMHSSQNEQDSRA----YGKFALIPVL--EPSDPQEAYDYVKYAFELSEKSGLPVILRTTT--RVS 178 (640)
T ss_pred ccccEEEEEcc-CCCcccccchhHhHH----HHHhcCceee--cCCChHHHHHHHHHHHHHHHHhCCCEEEEEEe--eee
Confidence 56787777666 566766666554322 3455678776 45599999999999999999999999987765 567
Q ss_pred CCCCC
Q psy4209 88 HNEGD 92 (856)
Q Consensus 88 Hse~D 92 (856)
|+.+|
T Consensus 179 h~~~~ 183 (640)
T COG4231 179 HSRGD 183 (640)
T ss_pred cccee
Confidence 77655
No 174
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=48.93 E-value=22 Score=40.50 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=44.2
Q ss_pred CCccCcEEEEEEcCCceeccCCCCccc-cchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHH
Q psy4209 6 PYNTHGTIHIIINNQVGFTANPWETRS-SMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARY 68 (856)
Q Consensus 6 ~y~~gGvIfvveNNqyg~sT~~~~~~s-~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~ 68 (856)
.=+.|-|+=|.-=|+|=|+-|+--++- ...+.+.-.+||-.-+.|+|+|+.++...+..|++.
T Consensus 187 P~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~ 250 (379)
T PF09364_consen 187 PATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDW 250 (379)
T ss_dssp TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHH
T ss_pred cccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 335677777777899999998655443 456888889999999999999999998877666544
No 175
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=45.59 E-value=31 Score=42.80 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=30.7
Q ss_pred cCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCCC
Q psy4209 43 IGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGH 88 (856)
Q Consensus 43 ~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~GH 88 (856)
+|+-.+ -|||+|++++..+.+.+-+. ...||+||+++| ..|+
T Consensus 325 lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T--~KGk 367 (701)
T PLN02225 325 LGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVIT--EENR 367 (701)
T ss_pred cCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEe--cCCC
Confidence 344444 48999999999988877542 224999999999 3454
No 176
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=45.33 E-value=85 Score=41.51 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=38.1
Q ss_pred chhhhhhhhcCCcEE-EEe-CCCHHHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 34 MYCTCVAKVIGAPVF-HVN-ADEPEVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 34 ~~~sdrAk~~gip~~-~VD-G~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
.++..+|.++|.+.+ ++- |-++..+..++++|.+ .+||.||++.+-
T Consensus 1020 kd~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1020 KDLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYSP 1067 (1165)
T ss_pred cCHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEECC
Confidence 457788999999866 676 6799999999999866 589999999874
No 177
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=45.15 E-value=38 Score=33.14 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=65.1
Q ss_pred CcEEEccCcchHHHHHHHhhhccCCCC-cceeecccch-hhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCCCCc
Q psy4209 283 KFHVYNSILNEMAALSFEYGYSLVDPN-FLVIWEAQFG-DFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEGQGP 359 (856)
Q Consensus 283 ~~rV~nspLsE~~i~G~~~G~a~~g~~-~l~~wE~qfg-DF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g~Gp 359 (856)
.++++.+ .+|.+.++++.||+..+-+ .++ =.+.| -|.| +...| ..-|..+.||+++.-. +..+.|.
T Consensus 34 ~~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~--~~~~gpG~~n-~~~~l-------~~A~~~~~Pll~i~~~~~~~~~~~ 102 (155)
T cd07035 34 GIRYILV-RHEQGAVGMADGYARATGKPGVV--LVTSGPGLTN-AVTGL-------ANAYLDSIPLLVITGQRPTAGEGR 102 (155)
T ss_pred CCEEEEe-CCHHHHHHHHHHHHHHHCCCEEE--EEcCCCcHHH-HHHHH-------HHHHhhCCCEEEEeCCCccccccC
Confidence 4677664 5999999999999999665 455 34422 2222 21222 2223336899998754 3222222
Q ss_pred cCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhCC--C-CCcEEEEec
Q psy4209 360 EHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLP--F-RRPLVVLTP 425 (856)
Q Consensus 360 ~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~--~-~~P~i~~e~ 425 (856)
.+-|. .+ ....+..+..+ ...+++++++...+.++++.- . +.|+.+.-|
T Consensus 103 ~~~q~---------~d-------~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 103 GAFQE---------ID-------QVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred Ccccc---------cC-------HHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 21110 00 01222333344 455578999999999998642 2 568887654
No 178
>KOG1185|consensus
Probab=42.55 E-value=71 Score=37.78 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=35.1
Q ss_pred hhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 36 CTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 36 ~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.-..++++|..++.|+ .++++..+++.|. |.+.+|++|.++-
T Consensus 518 Y~~v~ka~G~kG~~v~--t~~el~~~l~~a~---q~~~~psvINVlI 559 (571)
T KOG1185|consen 518 YDKVAKAFGGKGYFVS--TVEELLAALQQAC---QDTDKPSVINVLI 559 (571)
T ss_pred HHHHHHHcCCCceeeC--CHHHHHHHHHHHH---hcCCCCeEEEEEe
Confidence 4678999999999999 7888888887765 6677999998864
No 179
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=41.96 E-value=79 Score=35.21 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=37.1
Q ss_pred hhhhhhhhcCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 35 YCTCVAKVIGAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 35 ~~sdrAk~~gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
.+..+|.++|.+.+ ++---|+....+.+++|+++ +||.||++.+
T Consensus 159 d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~s 203 (294)
T COG1013 159 DPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLS 203 (294)
T ss_pred CHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEec
Confidence 67788899998855 77778899999999999885 4999999975
No 180
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=40.72 E-value=64 Score=32.41 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=78.8
Q ss_pred CcccccccCCcEEEccCcchHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-
Q psy4209 274 LHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH- 352 (856)
Q Consensus 274 ~~~L~~~~g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~- 352 (856)
+..|.+.- ..|++. ...|.+....+.||+..+-+|-+ =++...- ++. |.++....-|..+.||+++...
T Consensus 31 ~~al~~~~-~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v--~~~~~Gp--G~~----n~~~~l~~A~~~~~Pvl~i~g~~ 100 (172)
T PF02776_consen 31 LDALEKSP-GIRFIP-VRHEQGAAFMADGYARATGRPGV--VIVTSGP--GAT----NALTGLANAYADRIPVLVITGQR 100 (172)
T ss_dssp HHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEE--EEEETTH--HHH----TTHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHhhhhc-ceeeec-ccCcchhHHHHHHHHHhhccceE--EEeeccc--chH----HHHHHHhhcccceeeEEEEeccc
Confidence 33444432 467776 78999999999999988777766 3333311 121 2222222223336898888753
Q ss_pred c--CCCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhh---CCCCCcEEEEeccc
Q psy4209 353 G--IEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLL---LPFRRPLVVLTPKA 427 (856)
Q Consensus 353 G--~~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~---~~~~~P~i~~e~K~ 427 (856)
+ ..+.+..|......+++ ..+-. ....+++|.+....|+++++ ...+.|+.+.-|+.
T Consensus 101 ~~~~~~~~~~q~~~d~~~~~-----------------~~~~k-~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 101 PSAGEGRGAFQQEIDQQSLF-----------------RPVTK-WSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp SGGGTTTTSTTSSTHHHHHH-----------------GGGSS-EEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred chhhhcccccccchhhcchh-----------------ccccc-hhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 2 24555555332223322 22222 25667899999999998875 24589999999999
Q ss_pred ccCCC
Q psy4209 428 LLRHP 432 (856)
Q Consensus 428 L~r~~ 432 (856)
++..+
T Consensus 163 v~~~~ 167 (172)
T PF02776_consen 163 VQEAE 167 (172)
T ss_dssp HHTSE
T ss_pred HhhCc
Confidence 88664
No 181
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=38.81 E-value=74 Score=30.14 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=29.6
Q ss_pred ccccchhhhhhhhcCCcEEE--EeCCCH-HHHHHHHHHHHHHHHccCCcEEEEEeee
Q psy4209 30 TRSSMYCTCVAKVIGAPVFH--VNADEP-EVVVSIMKLLARYRQTFKRDAFIDIIGY 83 (856)
Q Consensus 30 ~~s~~~~sdrAk~~gip~~~--VDG~D~-~aV~~a~~~Av~~~R~g~gPvlIe~~tY 83 (856)
+.+.....+.|+..||..+| |++.++ .+-..++..+++ .-.||||+.|.+=
T Consensus 43 qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 43 QPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRSG 96 (110)
T ss_dssp -T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SCS
T ss_pred CCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCCC
Confidence 33444567888999999988 465554 444445555444 4578999999763
No 182
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=35.48 E-value=1.4e+02 Score=34.52 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=48.0
Q ss_pred EEEcCCcHHHHHHHHHHHcCCCCcEEEEEecccCCCCHHHHHHHHhcCCCCceEEEEecCCCCCCcHH
Q psy4209 466 YILCSGKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWK 533 (856)
Q Consensus 466 vv~~~g~v~~~l~~a~~~~~~~~~vevi~l~~L~P~~~~~i~~sv~kt~~~~~~v~vqEe~~~~G~~~ 533 (856)
||.-.|+.=.-+..--+..| .++.+|+.++=.|+|.+.|.+.|++.+..+-|.+||-|.-+ |+-.
T Consensus 84 Lv~~nG~FG~R~~~ia~~~g--~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETST-Gvln 148 (383)
T COG0075 84 LVVVNGKFGERFAEIAERYG--AEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETST-GVLN 148 (383)
T ss_pred EEEeCChHHHHHHHHHHHhC--CceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcc-cccC
Confidence 55555554333333223345 79999999999999999999999999888878999988754 5543
No 183
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=34.24 E-value=35 Score=33.90 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=73.1
Q ss_pred hHHHHHHHhhhccCCCCcceeecccchhhHHhHHHHHHHHHHhhhhhcCCccCeEEEcCc-cCCCCCccCCCCchhhhhh
Q psy4209 293 EMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH-GIEGQGPEHSSARPERFLE 371 (856)
Q Consensus 293 E~~i~G~~~G~a~~g~~~l~~wE~qfgDF~~~A~~~id~~~a~~~~kw~~~~~lv~~lP~-G~~g~Gp~HSsar~Er~lq 371 (856)
|.--+|...|+.|+|.+|-. =+|-...-| ..|-++|....+ +-|+.|+.-| |+.+-+-+- |--|-|.+
T Consensus 51 EEeg~GIcAGa~lAGkk~ai--lmQnsGlGN-----siNal~SL~~ty--~iPl~ml~ShRG~~~E~i~A-QVpmGr~~- 119 (172)
T COG4032 51 EEEGVGICAGAYLAGKKPAI--LMQNSGLGN-----SINALASLYVTY--KIPLLMLASHRGVLKEGIEA-QVPMGRAL- 119 (172)
T ss_pred hhcceeeehhhhhcCCCcEE--EEeccCcch-----HHHHHHHHHHHh--ccchhhhhhccchhhcCCcc-ccccchhh-
Confidence 44456899999999999988 456544333 345566655444 6799988888 774443221 11122322
Q ss_pred hcCCCCcchhhhhhhhcCCCCeEEEecCCcchHHHHHHHhhhC--CCCCcEEEEecccccCC
Q psy4209 372 LCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL--PFRRPLVVLTPKALLRH 431 (856)
Q Consensus 372 l~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~~lLr~~i~~--~~~~P~i~~e~K~L~r~ 431 (856)
......-++.-..|-+|+.+..++.-++.. +-.+||.+|-.-.+++.
T Consensus 120 -------------~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~~~We~ 168 (172)
T COG4032 120 -------------PKILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSPKYWEA 168 (172)
T ss_pred -------------HHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEechHHhhh
Confidence 222344567777889999999988877653 34789887766555443
No 184
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.06 E-value=98 Score=31.39 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=41.7
Q ss_pred CCCccccchhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEee
Q psy4209 27 PWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIG 82 (856)
Q Consensus 27 ~~~~~s~~~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~t 82 (856)
-.+-|-+++.+--|++||..++-++|++-+.|.+.++..+ ++.+||.+|+..+
T Consensus 14 ~RDkRiTTHV~LtARAfGA~gil~~~e~De~v~esv~dVv---~rwGG~F~v~~~~ 66 (179)
T COG1303 14 ERDKRITTHVALTARAFGADGILLDGEEDEKVVESVEDVV---ERWGGPFFVKFGV 66 (179)
T ss_pred cccccchhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHH---HhcCCCEEEEEcc
Confidence 3455556677777899999999999998778888877765 5689999887753
No 185
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=30.82 E-value=51 Score=39.93 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=29.2
Q ss_pred CCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeec
Q psy4209 44 GAPVF-HVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYR 84 (856)
Q Consensus 44 gip~~-~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR 84 (856)
|+..+ -|||+|++++..+.+.| |..+||+||+++|--
T Consensus 243 Gf~YiGPiDGHni~~Li~~Lk~~----kd~~gPvllHv~T~K 280 (627)
T COG1154 243 GFNYIGPIDGHNLEELIPTLKNA----KDLKGPVLLHVVTKK 280 (627)
T ss_pred CCeeECCcCCCCHHHHHHHHHHH----hcCCCCEEEEEEecC
Confidence 44444 48999999999887765 558999999999853
No 186
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.49 E-value=68 Score=23.40 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=17.6
Q ss_pred HHHHHcCCCCHHHHHHHHHHH
Q psy4209 117 QKLLQEKVITEDMVTLEVQAY 137 (856)
Q Consensus 117 ~~Li~~G~~teeel~~i~~~~ 137 (856)
+.|.+.|++|++|..+..+++
T Consensus 9 ~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 9 KELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHcCCCCHHHHHHHHHHH
Confidence 456789999999999888765
No 187
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=30.37 E-value=65 Score=32.28 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=34.0
Q ss_pred hhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 36 CTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 36 ~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
..+..+.+--...+| .+++.+-.+++.|+..++.++|||+|++
T Consensus 118 ~~~~~~~~tk~~~~v--~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 118 FLKMFEEITCAAARL--TDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHhheeEEEEe--CCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 345555555555666 4888999999999999999999999986
No 188
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=30.36 E-value=1.5e+02 Score=34.20 Aligned_cols=80 Identities=5% Similarity=0.030 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCceeccCCCCccc-cchhhhhhhhc-CCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEeeecCCC
Q psy4209 10 HGTIHIIINNQVGFTANPWETRS-SMYCTCVAKVI-GAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHG 87 (856)
Q Consensus 10 gGvIfvveNNqyg~sT~~~~~~s-~~~~sdrAk~~-gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~~tYR~~G 87 (856)
.++|.++.+ .-|.+|...-..+ ++....+..++ +.|.+.+...|+.+++..+..|.+.+.+.+-||++-..+| -+
T Consensus 98 ~P~Viv~~~-R~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--ls 174 (376)
T PRK08659 98 TPCVIVNVQ-RGGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VG 174 (376)
T ss_pred CCEEEEEee-cCCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hh
Confidence 455666555 4444443211111 12122232334 4888999999999999999999999999999999999984 88
Q ss_pred CCCCC
Q psy4209 88 HNEGD 92 (856)
Q Consensus 88 Hse~D 92 (856)
|+...
T Consensus 175 h~~~~ 179 (376)
T PRK08659 175 HMREK 179 (376)
T ss_pred CCccc
Confidence 87543
No 189
>smart00087 PTH Parathyroid hormone.
Probab=29.35 E-value=21 Score=27.18 Aligned_cols=18 Identities=28% Similarity=0.890 Sum_probs=15.8
Q ss_pred cCCCHHHHHHHHHHhcCC
Q psy4209 824 HIKNIRRRRWLKAEVEKP 841 (856)
Q Consensus 824 HI~d~eer~WL~~riE~~ 841 (856)
||++.+.+.|||+++|..
T Consensus 16 ~~q~~~R~~WLq~~L~~V 33 (36)
T smart00087 16 HLQSLERREWLRKKLQDV 33 (36)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 688899999999999864
No 190
>KOG0400|consensus
Probab=28.75 E-value=70 Score=31.26 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhhhcCCccCeEEEcCccCCCCCccCCCCchhhhhhhcCCCCcchhhhhhhhcCCCCeEEEecCCcchHH
Q psy4209 326 QAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLF 405 (856)
Q Consensus 326 ~~~id~~~a~~~~kw~~~~~lv~~lP~G~~g~Gp~HSsar~Er~lql~~e~~~~~~~~~~~~~~~~gl~V~~pstpad~~ 405 (856)
..||.++..+|-.- .|.++.+|=-||. |+-..=.-..|-||||- .|+ .|--|.|.+
T Consensus 34 keqI~K~akKGltp--sqIGviLRDshGi-~q~r~v~G~kI~Rilk~------------------~Gl---~PeiPeDLy 89 (151)
T KOG0400|consen 34 KEQIYKLAKKGLTP--SQIGVILRDSHGI-GQVRFVTGNKILRILKS------------------NGL---APEIPEDLY 89 (151)
T ss_pred HHHHHHHHHcCCCh--hHceeeeecccCc-chhheechhHHHHHHHH------------------cCC---CCCCcHHHH
Confidence 34555555444221 2678888888888 33333333458888861 343 588999999
Q ss_pred HHHHHhhh
Q psy4209 406 HALRRQLL 413 (856)
Q Consensus 406 ~lLr~~i~ 413 (856)
||+++|+.
T Consensus 90 ~likkAv~ 97 (151)
T KOG0400|consen 90 HLIKKAVA 97 (151)
T ss_pred HHHHHHHH
Confidence 99999974
No 191
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=26.65 E-value=7.1e+02 Score=26.21 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=64.7
Q ss_pred EeCCCHHHHHHHHHHHHHHHH-ccCCcEEEEEeeecCC-------------------CCCCCCCCCC---C--CHHHHHH
Q psy4209 50 VNADEPEVVVSIMKLLARYRQ-TFKRDAFIDIIGYRRH-------------------GHNEGDDPSF---T--QPLMYEK 104 (856)
Q Consensus 50 VDG~D~~aV~~a~~~Av~~~R-~g~gPvlIe~~tYR~~-------------------GHse~D~~~y---r--~~~e~~~ 104 (856)
..+.+..+.+.+...+.+++. +|-.-+++|.-.||++ .||+.-=|.| + -=.+|.+
T Consensus 74 ~~~~N~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL~fPh~~~~~p~~~ri~G~Hia~y~~ 153 (193)
T PRK08569 74 GDTGNTPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGLEIPHGEEVLPDEDRIRGEHIAEYAE 153 (193)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCCcCCCCCCcCCCccccccchHHHHHH
Confidence 468999999999998888886 4557899999999998 6776433332 1 1123332
Q ss_pred HHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4209 105 IKQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEY 145 (856)
Q Consensus 105 ~~~~dpi~~~~~~~Li~~G~~teeel~~i~~~~~~~v~~a~ 145 (856)
..+.+..-..|.++| +.| ++.+++.++-+++.+.|.+++
T Consensus 154 ~l~~e~y~~~Fs~y~-~~g-~~~~~l~~~~~~~~~~i~~~~ 192 (193)
T PRK08569 154 SLKEENYKKQFSKYL-ERG-LDPEDLPEHFEEVKEKILEEY 192 (193)
T ss_pred HHhhhHHHHHHHHHH-hcC-CCHHHHHHHHHHHHHHHHHhc
Confidence 222222445565555 555 789999999999888887654
No 192
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=26.54 E-value=5.4e+02 Score=27.50 Aligned_cols=128 Identities=13% Similarity=0.056 Sum_probs=66.1
Q ss_pred cEEEccCcchHHHHHHHhhhccC---------C-CCcceeecccchhhHHh--HHHHHHHHHHhhhhhcCCccCeEEEcC
Q psy4209 284 FHVYNSILNEMAALSFEYGYSLV---------D-PNFLVIWEAQFGDFANN--AQAVFDQWISSARSKWNIDSGLVLLLP 351 (856)
Q Consensus 284 ~rV~nspLsE~~i~G~~~G~a~~---------g-~~~l~~wE~qfgDF~~~--A~~~id~~~a~~~~kw~~~~~lv~~lP 351 (856)
.+..++.+.-.+-||+++.+|+. . .++|+ .-.||-... .+..+.+ ..+ .+.|+++++=
T Consensus 53 ~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv---~i~GDG~~~~~g~~~l~t---a~~----~~l~i~ivVl 122 (237)
T cd02018 53 VPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVV---VIGGDGATYDIGFGALSH---SLF----RGEDITVIVL 122 (237)
T ss_pred CCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEE---EEeCchHHHhccHHHHHH---HHH----cCCCeEEEEE
Confidence 34556665556888887776653 3 24555 456887542 2222322 222 2467766664
Q ss_pred c--cCCCCCccCCCC-chhhhhhh--cCCCCcchhhh--hhhhcCCCCeEEEecCCcchHHHHHHHhhhCCCCCcEEEE
Q psy4209 352 H--GIEGQGPEHSSA-RPERFLEL--CSDSPRCVELD--MKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVL 423 (856)
Q Consensus 352 ~--G~~g~Gp~HSsa-r~Er~lql--~~e~~~~~~~~--~~~~~~~~gl~V~~pstpad~~~lLr~~i~~~~~~P~i~~ 423 (856)
. +|.-.+-+++.. ...+..+. ...+.. .+++ .+.-.++++.+.+.+.+|.+...+|++++. +.+.|.+|-
T Consensus 123 NN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~-~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~-~~~GP~lI~ 199 (237)
T cd02018 123 DNEVYSNTGGQRSGATPLGADSKMAPAGKKED-KKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS-RTDGPTFIH 199 (237)
T ss_pred CCccccCCCCCCCCCCcCCCcccccCCCCcCC-CCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh-cCCCCEEEE
Confidence 2 332112223321 01110000 000000 0111 122347777777789999999999999995 137888764
No 193
>KOG4721|consensus
Probab=26.07 E-value=21 Score=42.82 Aligned_cols=95 Identities=18% Similarity=0.298 Sum_probs=58.5
Q ss_pred chhHHHHHHHHHHHHHhhhcchhhHHHHHHHHhhh-----h---ccCCeEEEeeccCCCCcccccceeeeecCCCCEeec
Q psy4209 202 KLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTL-----L---DSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTP 273 (856)
Q Consensus 202 ~~h~~l~~~l~~r~~~~~~~~idw~~aE~la~~sl-----l---~eg~~V~l~GeDv~~gtf~~Rh~v~~d~~~gg~~~~ 273 (856)
-.+-.|..+|+.+..+...-.+||.+..+....-| + ..-++|.|+-+||-. + .-|+.
T Consensus 194 Ca~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VK---------I------sDFGT 258 (904)
T KOG4721|consen 194 CAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVK---------I------SDFGT 258 (904)
T ss_pred cccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEE---------e------ccccc
Confidence 35566677777776665556699999777544333 2 235889999999843 1 22333
Q ss_pred Ccccccc-----c-------CCcEEEccCcchHHHHHHHhhhccCCCCcceeecccchh
Q psy4209 274 LHHIGAE-----A-------GKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGD 320 (856)
Q Consensus 274 ~~~L~~~-----~-------g~~rV~nspLsE~~i~G~~~G~a~~g~~~l~~wE~qfgD 320 (856)
.+.+.++ | ++.-|.|-|.||--=+ +.+| |||||+-.|.
T Consensus 259 S~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDI-wSfG--------VVLWEmLT~E 308 (904)
T KOG4721|consen 259 SKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDI-WSFG--------VVLWEMLTGE 308 (904)
T ss_pred hHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccce-ehhH--------HHHHHHHhcC
Confidence 3333332 2 5677888899886433 3333 6888876554
No 194
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=25.70 E-value=92 Score=31.31 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=32.2
Q ss_pred hhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 36 CTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 36 ~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
..+..+.+---..+| .+++.+.+++..|++.++..+|||+|++
T Consensus 114 ~~~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 114 LLALFKDVAVYNETV--TSPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred HHHHHHHhhcEEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 344555444434444 4888999999999999998899999987
No 195
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=23.69 E-value=2e+02 Score=27.64 Aligned_cols=41 Identities=7% Similarity=0.081 Sum_probs=33.0
Q ss_pred hhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy4209 40 AKVIGAPVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDI 80 (856)
Q Consensus 40 Ak~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g~gPvlIe~ 80 (856)
+..-+++-..+--.++.+....+..|+..+...+||++|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 112 GMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 33346677777678888899999999999888899999976
No 196
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=22.15 E-value=2.4e+02 Score=31.97 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=13.8
Q ss_pred HHHHHhhhccCCCCcceeecccchhh
Q psy4209 296 ALSFEYGYSLVDPNFLVIWEAQFGDF 321 (856)
Q Consensus 296 i~G~~~G~a~~g~~~l~~wE~qfgDF 321 (856)
.+|+++|..+.++..+| =.-|||=
T Consensus 131 AiGaAla~k~~~~~~~v--v~~~GDG 154 (341)
T TIGR03181 131 AAGVAYALKLRGEDNVA--VTYFGDG 154 (341)
T ss_pred HHhHHHHHHhhCCCCEE--EEEecCC
Confidence 34555555555565555 4578883
No 197
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=21.57 E-value=2.9e+02 Score=26.87 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=32.0
Q ss_pred hhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHHHcc-CCcEEEEE
Q psy4209 37 TCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTF-KRDAFIDI 80 (856)
Q Consensus 37 sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~R~g-~gPvlIe~ 80 (856)
.+..+.+-....++ ++++++...+.+|+..++.. +|||.|++
T Consensus 111 ~~~~~~~~~~~~~i--~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 111 VALFRPITKWAYRV--TSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHHHHhceEEEc--CCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 34444444444555 58899999999999999988 79999986
No 198
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=20.86 E-value=3.2e+02 Score=27.15 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.7
Q ss_pred CeEEEecCCcchHHHHHHHhhhCCCCCcEEE
Q psy4209 392 NWFVLYPSTPSTLFHALRRQLLLPFRRPLVV 422 (856)
Q Consensus 392 gl~V~~pstpad~~~lLr~~i~~~~~~P~i~ 422 (856)
|++-+...|+++....|++++.. +.|.++
T Consensus 122 G~~~~~v~~~~el~~al~~a~~~--~gp~vi 150 (157)
T cd02001 122 GYLVLSAPLLGGLGSEFAGLLAT--TGPTLL 150 (157)
T ss_pred CCceEEcCCHHHHHHHHHHHHhC--CCCEEE
Confidence 55555568999999999999854 788875
No 199
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=20.40 E-value=3.4e+02 Score=27.17 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=33.6
Q ss_pred hhhhhhhhcCCcEEEEeCCCHHHHHHHHHHHHHHH-HccCCcEEEEE
Q psy4209 35 YCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYR-QTFKRDAFIDI 80 (856)
Q Consensus 35 ~~sdrAk~~gip~~~VDG~D~~aV~~a~~~Av~~~-R~g~gPvlIe~ 80 (856)
+.....+.+..-..+|. +++.+..++++|+..+ ...+||++|++
T Consensus 115 d~~~~~~~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~i 159 (172)
T PF02776_consen 115 DQQSLFRPVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEI 159 (172)
T ss_dssp HHHHHHGGGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEE
T ss_pred hhcchhccccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEc
Confidence 34555666776677774 6777788888888888 88899999987
Done!