RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4209
(856 letters)
>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
Reviewed.
Length = 924
Score = 804 bits (2079), Expect = 0.0
Identities = 277/570 (48%), Positives = 366/570 (64%), Gaps = 25/570 (4%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
+++L Y T GTIHI+INNQ+GFT +P + RS+ YCT VAK++ AP+FHVN D+PE VV
Sbjct: 366 LSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVF 425
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLL 120
+L YRQ FK+D ID++ YRRHGHNEGD+PSFTQPLMY+KIK+ E Y KL+
Sbjct: 426 ATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLV 485
Query: 121 QEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTG 180
E VITE+ V Y+ L++ +E KE + A W+ W + TG
Sbjct: 486 AEGVITEEEADEMVNEYRDALDAGFEVVKE---WRPADWLAGDWSPY-LGHEWDDPVDTG 541
Query: 181 CDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIE-ENSLDWAMAEALALGTLLDS 239
+ +L+ LA+ ++ P FK+H ++++L RR+M E E +DW MAEALA +LLD
Sbjct: 542 VPLERLKELAEKLTTVPEG-FKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDE 600
Query: 240 GHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSF 299
G+ +RL GQDS RGTFSHRHAV DQ TG TY PL+H+ F VY+S L+E A L F
Sbjct: 601 GYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGF 660
Query: 300 EYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGP 359
EYGYS +PN LVIWEAQFGDFAN AQ V DQ+ISS KW SGLV+LLPHG EGQGP
Sbjct: 661 EYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHGYEGQGP 720
Query: 360 EHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRP 419
EHSSAR ERFL+LC++ N V P+TP+ FH LRRQ L PFR+P
Sbjct: 721 EHSSARLERFLQLCAED---------------NMQVCNPTTPAQYFHLLRRQALRPFRKP 765
Query: 420 LVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIE 479
LVV+TPK+LLRHP S+ E+L+ + F+ + D + + KV++ +LCSGK+YYDL+E
Sbjct: 766 LVVMTPKSLLRHPLAVSSLEELA-EGSFQPVIGDI-DELDPKKVKRVVLCSGKVYYDLLE 823
Query: 480 ARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARM 539
AR + + +AI R+EQ+ PFP+ +++ Y N K+V WCQ EP+N G W ++Q +
Sbjct: 824 ARRKRGIDD-VAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHL 882
Query: 540 CSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
V+ Y GR S+ PA G + H
Sbjct: 883 EEVLPEGQKLR-YAGRPASASPAVGYMSLH 911
Score = 111 bits (280), Expect = 6e-25
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 31/207 (14%)
Query: 640 SFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSS 699
SFL G A Y+E +Y+Q+L++P+SV W +F G + + V S
Sbjct: 12 SFLFGANAAYIEELYEQYLKDPDSVDEEWRAFFDGLP---------GVAPDVAHSAVRES 62
Query: 700 FPRREETPIHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKT 759
F R + V+ + ++ L++ YR GHL AN+DPLG
Sbjct: 63 FRRLAKPARVSSAVSDPQ--------VKVLQLINAYRFRGHLAANLDPLG---------L 105
Query: 760 PDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPVG 819
VP + L DL+++ +G + ++L+ + IE L+ YCG +G
Sbjct: 106 WKRPDVPELDPAFYG--LTEADLDRTFNTG-SLALGKETATLR--EIIEALKKTYCGSIG 160
Query: 820 VEITHIKNIRRRRWLKAEVEKPNFYYS 846
VE HI + RRWL+ +E +S
Sbjct: 161 VEYMHISDPEERRWLQQRIESGRPSFS 187
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 718 bits (1855), Expect = 0.0
Identities = 274/570 (48%), Positives = 362/570 (63%), Gaps = 27/570 (4%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
+++L+ Y+ GT HI+INNQ+GFT +P + RS+ YCT VAK+I AP+FHVNAD+PE V+
Sbjct: 349 LSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLF 408
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLL 120
L YR FK+D ID++ YRRHGHNEGD+PS TQPLMY+KIK+ + + Y KL+
Sbjct: 409 APALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLI 468
Query: 121 QEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTG 180
E VI+E+ V Y+ L+ +E KE D W++ W G+ + TG
Sbjct: 469 AEGVISEEEADELVNDYRDALDQGFEVVKEYKEMD---WLEGDWSGYLNAGL--RHVDTG 523
Query: 181 CDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIE-ENSLDWAMAEALALGTLLDS 239
L+ L + P E F++H ++++L R+ M E +DW MAE LA TLLD
Sbjct: 524 VPKKTLKELGKKLCTIP-EGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDE 582
Query: 240 GHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSF 299
GH IRL GQDS RGTFSHRHAV DQ TG TY PL+H+ GKF V NS L+E A L F
Sbjct: 583 GHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGF 642
Query: 300 EYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGP 359
EYGYSL +P LV+WEAQFGDFAN AQ V DQ+ISS KW SGLV+LLPHG EGQGP
Sbjct: 643 EYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGYEGQGP 702
Query: 360 EHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRP 419
EHSSAR ERFL+LC+++ N V+ PSTP+ FH LRRQ L FR+P
Sbjct: 703 EHSSARLERFLQLCAEN---------------NMQVVVPSTPAQYFHLLRRQALRDFRKP 747
Query: 420 LVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIE 479
L+V+TPK+LLRH S+ E+L+ + F+ L D + + KV++ +LCSGK+YYDL+E
Sbjct: 748 LIVMTPKSLLRHKLAVSSLEELT-EGTFQPVLEDI-DELD-PKVKRVVLCSGKVYYDLLE 804
Query: 480 ARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARM 539
R+ + + +AI R+EQ+ PFP +A ++ Y NVK+ WCQ EP+N G W Y+Q +
Sbjct: 805 QRE-KDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHL 863
Query: 540 CSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
V+ D + Y GR S+ PA G + H
Sbjct: 864 EEVLP-EGDKLRYAGRPASASPAVGSMSVH 892
Score = 101 bits (254), Expect = 6e-22
Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 43/207 (20%)
Query: 639 DSFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGS 698
S+L+G A Y+E +Y+Q+LQ+PNSV PSW ++F + +P +S
Sbjct: 7 TSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDG----------LSDPVRES------ 50
Query: 699 SFPRREETPIHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIK 758
RR + ++ L++ YR GHL AN+DPLG P
Sbjct: 51 --FRRLAKKGNDPDATLKS--------VKVLRLINAYRSRGHLHANLDPLGLKRP----D 96
Query: 759 TPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPV 818
P+ + DL++ T G + ++ + + IE L+ YCG +
Sbjct: 97 VPEL----DPEFHGLTE----ADLDE--TFNIGDGFLG-KETMTLRELIEILKKTYCGSI 145
Query: 819 GVEITHIKNIRRRRWLKAEVE--KPNF 843
GVE HI + +RWL+ +E KP F
Sbjct: 146 GVEYMHISDPEEKRWLQERIESGKPTF 172
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 682 bits (1763), Expect = 0.0
Identities = 252/569 (44%), Positives = 337/569 (59%), Gaps = 25/569 (4%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
+++L Y T GTIHI++NNQVGFT P +RSS Y T VAK+I AP+FHVN D+PE VV
Sbjct: 671 LSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVR 730
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLL 120
+ +L YRQ F +D ID++ YRR GHNEGDDPS TQPLMY+ I + + + YT+ L+
Sbjct: 731 VARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALI 790
Query: 121 QEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTG 180
IT + ++ YQ +LE + + +EA + P E E D T
Sbjct: 791 GRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPP-----ESVESDQGPPAGVDTA 845
Query: 181 CDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSG 240
L+ + D P E F +H L+ +L +RR+M E +DWA E LA G+LL G
Sbjct: 846 VSAEVLERIGDAHVNLP-EGFTVHPKLKPLLEKRREMAREGGIDWAFGELLAFGSLLLEG 904
Query: 241 HHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSFE 300
+RL GQDS+RGTFS RHAV D+ TG YTPL ++ + GKF VY+S+L+E AA+ FE
Sbjct: 905 TPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFE 964
Query: 301 YGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPE 360
YGYS+ P+ LV+WEAQFGDFAN AQ + D++ISS +KW SG+VLLLPHG EGQGP+
Sbjct: 965 YGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPD 1024
Query: 361 HSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPL 420
HSSAR ERFL+LC+ + N V PSTP+ FH LRRQ L RRPL
Sbjct: 1025 HSSARIERFLQLCA---------------EGNMTVAQPSTPANYFHLLRRQALSGPRRPL 1069
Query: 421 VVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIEA 480
VV TPK++LR S ED + + KFR + D D + KV + +LCSGK+YYDL
Sbjct: 1070 VVFTPKSMLRLKAAVSDVEDFT-EGKFRPVIDDPTVD-DGAKVRRVLLCSGKLYYDLAAR 1127
Query: 481 RDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMC 540
R+ + AI R+EQ+ P P ++ Y N +V W Q EP N G W ++ +
Sbjct: 1128 REKDGRDD-TAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLP 1186
Query: 541 SVMEITTDPVCYIGRDPSSVPASGLQAKH 569
++ + + R S+ PA+G H
Sbjct: 1187 ELLPDGR-RLRRVSRPASASPATGSAKVH 1214
Score = 67.6 bits (166), Expect = 2e-11
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 29/134 (21%)
Query: 713 VNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKN 772
+ ++ ++ + A++ L+H YR GHLMA+ DPL + PD
Sbjct: 377 ADHEDEVD---KNARVMELIHAYRVRGHLMADTDPLEYRQR----SHPDLD--------- 420
Query: 773 FAPL---LNFPDLNKSVTLPEDTKIGG--DQSSLKISDFIERLESVYCGPVGVEITHIKN 827
L L DL++ +GG + +K+ D + L YC VG+E HI++
Sbjct: 421 --VLTHGLTLWDLDREF------PVGGFGGKERMKLRDILGVLRDSYCRTVGIEYMHIQD 472
Query: 828 IRRRRWLKAEVEKP 841
+RRWL+ VE+P
Sbjct: 473 PEQRRWLQERVERP 486
Score = 43.3 bits (103), Expect = 6e-04
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 649 YLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSSFPRREETP 707
+E MY Q+L +PNSV PSW ++FA+ ++ ++ + + P
Sbjct: 10 LVEEMYQQYLADPNSVDPSWREFFADYG-PGSTAAPTAAAAAAAAAASAPAAAPAAKAP 67
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 583 bits (1504), Expect = 0.0
Identities = 262/579 (45%), Positives = 346/579 (59%), Gaps = 38/579 (6%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
M+KL Y+ GTIHIIINNQ+GFT NP + RS+ YC+ +AK+I AP+FHVNAD+PE V
Sbjct: 367 MSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAF 426
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLL 120
+L YR TFKRD FID++GYRRHGHNE D+PS TQPLMY+KIK+ + Y KL+
Sbjct: 427 ATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLV 486
Query: 121 QEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPW------EGFEKDTTLI 174
E V TE+ VT V Y+ LE+ ++A + P E + +
Sbjct: 487 SEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMK 546
Query: 175 QMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIE--ENSLDWAMAEALA 232
+LQ LA +S+ P E ++H + ++ R K + E DW AE LA
Sbjct: 547 ----------RLQELAKRISEVP-EGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLA 595
Query: 233 LGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILN 292
TL+D G +RL G+DS+RGTF RHAV DQ+ G+TYTPL H+ G F V+NS+L+
Sbjct: 596 FATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLS 655
Query: 293 EMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPH 352
E + L FEYGY+ P LVIWEAQFGDFAN AQ V DQ+ISS KW SGLV+LLPH
Sbjct: 656 EESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPH 715
Query: 353 GIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQL 412
G EGQGPEHSS R ERFL+L ++ N V P+TP+ +FH LRRQ
Sbjct: 716 GYEGQGPEHSSGRLERFLQLAAEQ---------------NMQVCVPTTPAQVFHILRRQA 760
Query: 413 LLPFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAY--LPDTMADRNKDKVEKYILCS 470
L RRPLVV++PK+LLRHP S+ E+L+ T + ++ + + V++ +LCS
Sbjct: 761 LRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLVLCS 820
Query: 471 GKIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFG 530
GK+YYDL E R + +AI R+EQ+ PFP++A + Y N+K++ WCQ EP N G
Sbjct: 821 GKVYYDLHEQRRKNG-QKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMG 879
Query: 531 FWKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
W Y Q + V+ V Y GR S+ PA G + H
Sbjct: 880 AWYYSQPHLREVIPEGVS-VRYAGRPASASPAVGYMSLH 917
Score = 100 bits (250), Expect = 2e-21
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 26/207 (12%)
Query: 641 FLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSSF 700
+L+G +Y+E +Y+ +L +P+SV SW F + + P G Q + S F
Sbjct: 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQ--LPGP-----GPAPDQFHSPTRSYF 53
Query: 701 PRREETPIHGEFV--NPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLG-FSTPFGKI 757
R + G +PD N+ ++ L+ YR GHL AN+DPLG
Sbjct: 54 RRLAKDASRGSVTISDPDTNV----SQVKVLQLIRAYRFRGHLHANLDPLGLKQQDKVPE 109
Query: 758 KTPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGP 817
F + DL ++ + L + ++ L+ YCG
Sbjct: 110 LDLSFYGLTEA------------DLQETFNIGSFVSGKDATMKLSNLELLQALKQTYCGS 157
Query: 818 VGVEITHIKNIRRRRWLKAEVEKPNFY 844
+G E HI + +RWL+ +E
Sbjct: 158 IGAEYMHITSTEEKRWLQQRIESGERA 184
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 204 bits (522), Expect = 5e-60
Identities = 64/102 (62%), Positives = 80/102 (78%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
++ L Y T GTIHI++NNQ+GFT +P ++RSS YCT VAK+IGAP+FHVN D+PE VV
Sbjct: 164 LSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVR 223
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMY 102
+L YRQ FK+D ID++ YRRHGHNE D+PSFTQPLMY
Sbjct: 224 ATRLALEYRQKFKKDVVIDLVCYRRHGHNELDEPSFTQPLMY 265
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 172
Score = 165 bits (421), Expect = 3e-47
Identities = 49/212 (23%), Positives = 68/212 (32%), Gaps = 42/212 (19%)
Query: 222 SLDWAMAEALALGTLLDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEA 281
+ A AL L + G D GTF+ + Q G
Sbjct: 2 KIATRKASGEALAELAKRDPRVVGGGADVAGGTFTVTKGLLHPQGDGR------------ 49
Query: 282 GKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWN 341
V ++ + E A + G +L L EA FGDFAN D I +
Sbjct: 50 ----VIDTGIAEQAMVGIANGMALHGL--LPPVEATFGDFAN----RADDAIRHYAALGK 99
Query: 342 IDSG-LVLLLPHGIEGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPST 400
+ +V P G+ GP H S FL N V+ PS
Sbjct: 100 LPVPFVVTRDPIGVGEDGPTHQSQEDLAFLRAI-----------------PNLKVVRPSD 142
Query: 401 PSTLFHALRRQLLLPFRRPLVVLTPKALLRHP 432
+ LR + P+V+ P+ LLRH
Sbjct: 143 AAETKGLLRAAIEDDG--PVVLRLPRQLLRHK 172
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 108 bits (273), Expect = 5e-26
Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 4/153 (2%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
A L I + NNQ + + +S A+ G P V+ +P V
Sbjct: 149 FAALWKLPV---IFVCENNQYAISTPAERSSASTTYADRARGYGIPGIRVDGMDPLAVYQ 205
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQ-PLMYEKIKQTKPLFEKYTQKL 119
+K A +T I+++ YR GH+ DDPS + E++++ K ++ + L
Sbjct: 206 AVKFAAERARTGNGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHL 265
Query: 120 LQEKVITEDMVTLEVQAYQQKLESEYEKSKEAT 152
+ V++E+ + + ++++E +K++
Sbjct: 266 VSRGVVSEEELKEIEKEVRKEIEEAVKKAESDP 298
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 90.6 bits (226), Expect = 2e-21
Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 29/146 (19%)
Query: 287 YNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGL 346
++ + E A + F G +L L F F + A+ DQ S+ S +
Sbjct: 18 IDTGIAEQAMVGFAAGLALHG---LRPVVEIFFTFFDRAK---DQIRSAGASGNVP--VV 69
Query: 347 VLLLPHGIEGQ-GPEHSSARPE-RFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTL 404
G G+ GP H S E + V+ PS P+
Sbjct: 70 FRHDGGGGVGEDGPTHHSIEDEALLRAIP------------------GLKVVAPSDPAEA 111
Query: 405 FHALRRQLLLPFRRPLVVLTPKALLR 430
LR + ++ L K+L R
Sbjct: 112 KGLLRAAIRDD-GPVVIRLERKSLYR 136
>gnl|CDD|188688 cd08734, RGS-like_1, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 1. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. As a major G-protein
regulator, the RGS domain containing proteins that are
involved in many crucial cellular processes. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play an important role in neuronal signal modulation.
Some RGS proteins are the principal elements needed for
proper vision.
Length = 109
Score = 34.0 bits (78), Expect = 0.059
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 708 IHGEFVNPDEN--INLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPF--GKIKTPDFK 763
I+ EF++ + IN+SS A L+ L + + ANVD G +TPF K
Sbjct: 46 IYKEFISSESPFQINISS--AMLRRLDNDFELLTGAFANVDS-GLNTPFNEEISKIEASD 102
Query: 764 RVPT 767
P
Sbjct: 103 LYPA 106
>gnl|CDD|150656 pfam10007, DUF2250, Uncharacterized protein conserved in archaea
(DUF2250). Members of this family of hypothetical
archaeal proteins have no known function.
Length = 93
Score = 32.7 bits (75), Expect = 0.13
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 802 KISDFIERLESVYCGPVG-VEITHIKNIRRRRWLKAEVEKPNFYYSLNRISD 852
++ D +++LE + G + V + IK + +EV K + YY L R +
Sbjct: 38 EVRDLLDKLEEM--GLLERVTGSTIKRTEAKFKKSSEVHKHHTYYRLTREGE 87
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 31.8 bits (73), Expect = 1.4
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 282 GKFHVYN-----SILNEMAALSFEYGYSLVDPNF 310
G F+ Y+ SILNE AA +F +G+SLV F
Sbjct: 150 GYFNGYDPNVDPSILNEFAAAAFRFGHSLVPGTF 183
>gnl|CDD|236497 PRK09400, secE, preprotein translocase subunit SecE; Reviewed.
Length = 61
Score = 28.7 bits (65), Expect = 1.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 606 CKRVLQVTRQPSW 618
KRVL+V R+P+
Sbjct: 17 YKRVLKVARKPTR 29
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 31.3 bits (71), Expect = 2.5
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 582 FKVFLPWFLVKSAQGGIMWKVVNLCKRVLQVTRQPSWVQARASKWTPVERP 632
+ +PW +A GGI V RV+Q Q S A P
Sbjct: 119 ISIVIPW----AAGGGIALVVF---CRVIQGLAQGSVSPATHKIIVKWAPP 162
>gnl|CDD|227668 COG5377, COG5377, Phage-related protein, predicted endonuclease
[DNA replication, recombination, and repair].
Length = 319
Score = 31.0 bits (70), Expect = 2.6
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 164 WEGFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENS- 222
W+ E+D LI M ++ D+V P + ++ L R E
Sbjct: 168 WKEIERDDELINMIINA----EIDFWNDIVLGPVPPALDGSSAAEKYLALRYAKTEAVKT 223
Query: 223 --LDWAMAEALA 232
L AEALA
Sbjct: 224 VDLPHFYAEALA 235
>gnl|CDD|180832 PRK07090, PRK07090, class II aldolase/adducin domain protein;
Provisional.
Length = 260
Score = 30.8 bits (70), Expect = 3.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 208 QRVLNQRRKMIEENSLDWAMAEALALG--TLLDSGHHIRLIGQDSKR----GTF-SHRHA 260
R Q ++++ W + + LAL L D+GH L GQ + R GT+ + R
Sbjct: 14 ARAQRQMDNELKDS--GWTLRQKLALTCRILFDAGHDSGLAGQITARAEAPGTYYTQRLG 71
Query: 261 VYFDQAT 267
+ FD+ T
Sbjct: 72 LGFDEIT 78
>gnl|CDD|233028 TIGR00571, dam, DNA adenine methylase (dam). All proteins in this
family for which functions are known are DNA-adenine
methyltransferases. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University). The DNA adenine methylase (dam) of
E. coli and related species is instrumental in
distinguishing the newly synthesized strand during DNA
replication for methylation-directed mismatch repair.
This family includes several phage methylases and a
number of different restriction enzyme chromosomal
site-specific modification systems [DNA metabolism, DNA
replication, recombination, and repair].
Length = 266
Score = 30.4 bits (69), Expect = 3.9
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 749 GFSTPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSSLKISDFIE 808
F+ PFG+ KTP+F + ++FA L + T S KI ++
Sbjct: 127 EFNVPFGRYKTPNF--FDEKNLRHFAEKLQ------NTTFLC-------GSFEKILAMVD 171
Query: 809 RLESVYCGP 817
VYC P
Sbjct: 172 DDSFVYCDP 180
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 717
Score = 30.2 bits (68), Expect = 6.1
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 409 RRQLLLPFRRPLVVLTPKA----LLRHPQVRS--TFEDLSLDTKFRAYLPDTMADRNKD- 461
+R L+L LVV+ P A L+ + + + + E L + Y PDT A D
Sbjct: 172 QRDLVLYLPDELVVVDPYAGLARLVAYDFITAAGSTEGLECGGRDHPYRPDTNAPPGCDH 231
Query: 462 KVEKY--ILCSGKIYY---DLIEARDAANLTEQIAIA------RLEQISPFPYRAFIN 508
+Y ++ S K + DL E E A RL+ I+P PY F+N
Sbjct: 232 APGEYARLVESAKAAFRRGDLFEVVPGQTFAEPCEDAPSSVFRRLKAINPSPYEFFVN 289
>gnl|CDD|197332 cd09098, INPP5c_Synj1, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of synaptojanin 1. This
subfamily contains the INPP5c domains of human
synaptojanin 1 (Synj1) and related proteins. It belongs
to a family of Mg2+-dependent inositol polyphosphate
5-phosphatases, which hydrolyze the 5-phosphate from the
inositol ring of various 5-position phosphorylated
phosphoinositides (PIs) and inositol phosphates (IPs),
and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. Synj1 occurs as two main isoforms: a brain
enriched 145 KDa protein (Synj1-145) and a ubiquitously
expressed 170KDa protein (Synj1-170). Synj1-145
participates in clathrin-mediated endocytosis. The
primary substrate of the Synj1-145 INPP5c domain is
PI(4,5)P2, which it converts to PI4P. Synj1-145 may work
with membrane curvature sensors/generators (such as
endophilin) to remove PI(4,5)P2 from curved membranes.
The recruitment of the INPP5c domain of Synj1-145 to
endophilin-induced membranes leads to a fragmentation
and condensation of these structures. The PI(4,5)P2 to
PI4P conversion may cooperate with dynamin to produce
membrane fission. In addition to this INPP5c domain,
these proteins contain an N-terminal Sac1-like domain;
the Sac1 domain can dephosphorylate a variety of
phosphoinositides in vitro.
Length = 336
Score = 29.6 bits (66), Expect = 6.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 381 ELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRRPLVVL 423
+LD+ F N Y +P TL H R +L RP+V L
Sbjct: 291 DLDLLNASFPDNSKEQYTWSPGTLLHYGRAELKTSDHRPVVAL 333
>gnl|CDD|239046 cd02131, PA_hNAALADL2_like, PA_hNAALADL2_like: Protease-associated
domain containing proteins like human N-acetylated
alpha-linked acidic dipeptidase-like 2 protein
(hNAALADL2). This group contains various PA
domain-containing proteins similar to hNAALADL2. The
function of hNAALADL2 is unknown. This gene has been
mapped to a chromosomal region associated with Cornelia
de Lange syndrome. The significance of the PA domain to
hNAALADL2 has not been ascertained. It may be a
protein-protein interaction domain. At peptidase active
sites, the PA domain may participate in substrate
binding and/or promoting conformational changes, which
influence the stability and accessibility of the site to
substrate.
Length = 153
Score = 28.7 bits (64), Expect = 6.9
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 476 DLIEARDAANLTEQIAIARLEQISPFPYR 504
DL RD N+T QIA+ +L Q +P Y+
Sbjct: 29 DLRRIRDNMNVTNQIALLKLGQ-APLLYK 56
>gnl|CDD|224519 COG1603, RPP1, RNase P/RNase MRP subunit p30 [Translation,
ribosomal structure and biogenesis].
Length = 229
Score = 29.3 bits (66), Expect = 7.1
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 24 TANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQTF 72
+P E RS +AKV+G E I++ R R F
Sbjct: 171 AESPLELRSPRDVISLAKVLGLEDDEAKKSLSEYPRLILRNRNRIRDGF 219
>gnl|CDD|218368 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 6, represents a mobile module of the RNA
polymerase. Domain 6 forms part of the shelf module.
This family appears to be specific to the largest
subunit of RNA polymerase II.
Length = 187
Score = 29.0 bits (66), Expect = 7.3
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 113 EKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRF 154
E + +L E V+ E + EV Q+ L+ EYE+ E R
Sbjct: 34 EGFLPGVLDEDVVKELLGDAEV---QKLLDEEYEQLLEDRRL 72
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 29.1 bits (66), Expect = 8.8
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 103 EKIKQTKPLFEKYTQKLLQ--------EKVITEDMVTLEVQAYQ---QKLESEYEKSKEA 151
+KIKQ + +K ++L + EK + EV + Q LE + E+S+E
Sbjct: 1 KKIKQLEEELDKAEERLEEAQEKLEEAEKRAEKAEA--EVASLNRRIQLLEEDLERSEE- 57
Query: 152 TRFDSA 157
R +A
Sbjct: 58 -RLATA 62
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family. The model
describes Niemann-Pick C type protein in eukaryotes. The
defective protein has been associated with Niemann-Pick
disease which is described in humans as autosomal
recessive lipidosis. It is characterized by the
lysosomal accumulation of unestrified cholesterol. It is
an integral membrane protein, which indicates that this
protein is most likely involved in cholesterol transport
or acts as some component of cholesterol homeostasis
[Transport and binding proteins, Other].
Length = 1204
Score = 29.8 bits (67), Expect = 9.1
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 532 WKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKHYLLAALNMEKKAFKVFLPWFL 590
W Q+ C G DPS + L + A FK +LP+FL
Sbjct: 908 WASPQSSCCCRKFTNGT--FCNGPDPSCFRCADLSSN----AQGRPSTTQFKEYLPFFL 960
>gnl|CDD|183997 PRK13358, PRK13358, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 269
Score = 28.9 bits (65), Expect = 9.4
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 197 PAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSGHHIRLIGQDSKR 252
P E HR+ + + R + D A AE L D G I L+ D R
Sbjct: 82 PRELVPGHRAFAQAIALHR---AADGFDLAQAEEL----RPDHGVMIPLLFMDPGR 130
>gnl|CDD|206563 pfam14395, COOH-NH2_lig, Phage phiEco32-like COOH.NH2 ligase-type
2. A family of COOH-NH2 ligases/GCS superfamily found
in the neighborhood of YheC/D-like ATP-grasp and the
CotE family of proteins in the firmicutes. Contextual
analysis suggests that it might be involved in cell wall
modification and spore coat biosynthesis.
Length = 261
Score = 28.9 bits (65), Expect = 9.7
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 180 GCDIAKLQ------LLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALAL 233
GCD +L+ LA+L P +P +L +L+R+L + + I ++ W A ++
Sbjct: 34 GCDNRRLRGAQKILPLAELRPAPSEDPDELTANLRRLLQEASRKIPYRNVRWL-AGSMPF 92
Query: 234 GTLLDSGH 241
G GH
Sbjct: 93 GGYPIGGH 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,622,971
Number of extensions: 4418508
Number of successful extensions: 3613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3574
Number of HSP's successfully gapped: 39
Length of query: 856
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 751
Effective length of database: 6,280,432
Effective search space: 4716604432
Effective search space used: 4716604432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.8 bits)