RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4209
(856 letters)
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium
smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Length = 868
Score = 846 bits (2188), Expect = 0.0
Identities = 236/578 (40%), Positives = 333/578 (57%), Gaps = 32/578 (5%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
+A L Y T GTIHI++NNQ+GFT P ++RSS YCT VAK+IGAP+FHVN D+PE
Sbjct: 301 LALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAW 360
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLL 120
+ +L +RQ FK+D ID++ YRR GHNEGDDPS TQP MY+ I + + YT+ L+
Sbjct: 361 VARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALI 420
Query: 121 QEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTG 180
I+ ++ YQ +LE + + +E + + + T
Sbjct: 421 GRGDISMKEAEDALRDYQGQLERVFNEVRELEK-HEIEPSESVEADQQIP----SKLATA 475
Query: 181 CDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSG 240
D A LQ + D P E F +H ++ VL +RR+M E +DWA AE LALG+L+ G
Sbjct: 476 VDKAMLQRIGDAHLALP-EGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEG 534
Query: 241 HHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAE------AGKFHVYNSILNEM 294
+RL GQD++RGTF+ RHAV D+ TG +TPL + GKF VYNS L+E
Sbjct: 535 KLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEF 594
Query: 295 AALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI 354
AA+ FEYGYS+ +P+ +V+WEAQFGDF N AQ++ D++ISS +KW S +VLLLPHG
Sbjct: 595 AAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH 654
Query: 355 EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL 414
EGQGP+H+S R ERFL+L ++ + + PSTP+ FH LRR
Sbjct: 655 EGQGPDHTSGRIERFLQLWAEG---------------SMTIAMPSTPANYFHLLRRHGKD 699
Query: 415 PFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTM---ADRNKDKVEKYILCSG 471
+RPL+V TPK++LR+ S D + ++KFR+ L + M + +++KV + +L SG
Sbjct: 700 GIQRPLIVFTPKSMLRNKAAVSDIRDFT-ESKFRSVLEEPMYTDGEGDRNKVTRLLLTSG 758
Query: 472 KIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGF 531
KIYY+L + N + +AI R+EQ++P P R + Y NVK+ W Q EP N G
Sbjct: 759 KIYYELAARKAKENRED-VAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGA 817
Query: 532 WKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
W + ++ + I R S P+SG H
Sbjct: 818 WPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVH 855
Score = 87.2 bits (217), Expect = 1e-17
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 726 AQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKS 785
A++ L+ YR+ GHLMA++DPL + F+ P + L DL++
Sbjct: 9 ARVIELIAAYRNRGHLMADIDPLR-------LDNTRFRSHPDLDVNSHG--LTLWDLDRE 59
Query: 786 VTLPEDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNFYY 845
+ D G + L+ D + L YC VGVE THI ++RW++ VE +
Sbjct: 60 FKV--DGFAGVQRKKLR--DILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKHDKP 115
Query: 846 S 846
+
Sbjct: 116 T 116
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 850 bits (2199), Expect = 0.0
Identities = 236/578 (40%), Positives = 333/578 (57%), Gaps = 32/578 (5%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVS 60
+A L Y T GTIHI++NNQ+GFT P ++RSS YCT VAK+IGAP+FHVN D+PE
Sbjct: 546 LALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAW 605
Query: 61 IMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLL 120
+ +L +RQ FK+D ID++ YRR GHNEGDDPS TQP MY+ I + + YT+ L+
Sbjct: 606 VARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALI 665
Query: 121 QEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTG 180
I+ ++ YQ +LE + + +E + + + T
Sbjct: 666 GRGDISMKEAEDALRDYQGQLERVFNEVRELEK-HEIEPSESVEADQQIP----SKLATA 720
Query: 181 CDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSG 240
D A LQ + D P E F +H ++ VL +RR+M E +DWA AE LALG+L+ G
Sbjct: 721 VDKAMLQRIGDAHLALP-EGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEG 779
Query: 241 HHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAE------AGKFHVYNSILNEM 294
+RL GQD++RGTF+ RHAV D+ TG +TPL + GKF VYNS L+E
Sbjct: 780 KLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEF 839
Query: 295 AALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGI 354
AA+ FEYGYS+ +P+ +V+WEAQFGDF N AQ++ D++ISS +KW S +VLLLPHG
Sbjct: 840 AAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH 899
Query: 355 EGQGPEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLL 414
EGQGP+H+S R ERFL+L ++ + + PSTP+ FH LRR
Sbjct: 900 EGQGPDHTSGRIERFLQLWAEG---------------SMTIAMPSTPANYFHLLRRHGKD 944
Query: 415 PFRRPLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTM---ADRNKDKVEKYILCSG 471
+RPL+V TPK++LR+ S D + ++KFR+ L + M + +++KV + +L SG
Sbjct: 945 GIQRPLIVFTPKSMLRNKAAVSDIRDFT-ESKFRSVLEEPMYTDGEGDRNKVTRLLLTSG 1003
Query: 472 KIYYDLIEARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGF 531
KIYY+L + N + +AI R+EQ++P P R + Y NVK+ W Q EP N G
Sbjct: 1004 KIYYELAARKAKENRED-VAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGA 1062
Query: 532 WKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKH 569
W + ++ + I R S P+SG H
Sbjct: 1063 WPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVH 1100
Score = 104 bits (263), Expect = 4e-23
Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 46/207 (22%)
Query: 640 SFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGSS 699
+ G + Q L + + + F + P
Sbjct: 201 RIIQGAESGDFLRTIHQLLLDD----DFFDEIF--RELGIPYE----------------- 237
Query: 700 FPRREETPIHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIKT 759
P+ NPD + + A++ L+ YR+ GHLMA++DPL +
Sbjct: 238 -------PVRWRTDNPDSIEDKN---ARVIELIAAYRNRGHLMADIDPLR-------LDN 280
Query: 760 PDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPVG 819
F+ P + L DL++ + D G + L+ D + L YC VG
Sbjct: 281 TRFRSHPDLDVNSHG--LTLWDLDREFKV--DGFAGVQRKKLR--DILSVLRDAYCRHVG 334
Query: 820 VEITHIKNIRRRRWLKAEVEKPNFYYS 846
VE THI ++RW++ VE + +
Sbjct: 335 VEYTHILEPEQQRWIQERVETKHDKPT 361
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 837 bits (2164), Expect = 0.0
Identities = 254/586 (43%), Positives = 345/586 (58%), Gaps = 32/586 (5%)
Query: 1 MAKLEPYNTHGTIHIIINNQVGFT-ANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVV 59
M+K Y GT+ I+INNQVGFT +NP + RS+ YCT + K++ AP+FHVNAD+PE V
Sbjct: 372 MSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVA 431
Query: 60 SIMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKL 119
+ +L +R TFKRD FID++ YRRHGHNE D+PS TQPLMY+KIK+ + Y KL
Sbjct: 432 FVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKL 491
Query: 120 LQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTT 179
QEKV T + T V Y+ L++ E + W + + +
Sbjct: 492 EQEKVATLEDATEMVNLYRDALDAGDCVVAE---WRPMNMHSFTWSPY-LNHEWDEEYPN 547
Query: 180 GCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIE-ENSLDWAMAEALALGTLLD 238
++ +LQ LA +S P E ++ + ++ R+ M E DW AE LA TL+D
Sbjct: 548 KVEMKRLQELAKRISTVP-EAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVD 606
Query: 239 SGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALS 298
G +RL G+DS RGTF HRHAV +Q+ G+TYTPL HI G F V++S+L+E A L+
Sbjct: 607 EGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLA 666
Query: 299 FEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSKWNIDSGLVLLLPHGIEGQG 358
FEYGY+ +P L IWEAQFGDFAN AQ V DQ+ISS KW GLV+LLPHG EGQG
Sbjct: 667 FEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQG 726
Query: 359 PEHSSARPERFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLFHALRRQLLLPFRR 418
PEHSSAR ER+L+LC++ N V PSTP+ ++H LRRQ L RR
Sbjct: 727 PEHSSARLERYLQLCAEQ---------------NMQVCVPSTPAQVYHMLRRQALRGMRR 771
Query: 419 PLVVLTPKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLI 478
PLVV++PK+LLRHP S+ E+L+ + F + + + + V++ ++CSGK+YYDL+
Sbjct: 772 PLVVMSPKSLLRHPLAVSSLEELA-NGTFLPAIGEI-DELDPKGVKRVVMCSGKVYYDLL 829
Query: 479 EARDAANLTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQAR 538
E R N +AI R+EQ+ PFP++A + + +VK WCQ EP N G W Q
Sbjct: 830 EQRRKNNQ-HDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHH 888
Query: 539 MCSVMEITTDPVCYIGRDPSSVPASGLQAKHY------LLAALNME 578
V+ + Y GR S+ PA G + H + ALN+E
Sbjct: 889 FREVIP-FGASLRYAGRPASASPAVGHMSVHQKQQQDLVNDALNVE 933
Score = 135 bits (343), Expect = 8e-33
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 23/208 (11%)
Query: 639 DSFLNGTFANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSSNGVGS 698
S+L+G +++E +Y+ +L +P+SV +W F + G Q +
Sbjct: 12 SSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQ-------LPGTGVKPDQFHSQTRE 64
Query: 699 SFPRREETPIHGEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMANVDPLGFSTPFGKIK 758
F R + D + N+ L++ YR GH AN+DPLG
Sbjct: 65 YFRRLAKDASRYSSTISDPDTNVKQVKV--LQLINAYRFRGHQHANLDPLGLWQQ----- 117
Query: 759 TPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSSLKISDFIERLESVYCGPV 818
+V L D ++ + + ++K+ + +E L+ YCGP+
Sbjct: 118 ----DKVADLDPSFHD--LTEADFQETFNV---GSFASGKETMKLGELLEALKQTYCGPI 168
Query: 819 GVEITHIKNIRRRRWLKAEVEKPNFYYS 846
G E HI + +RW++ +E ++
Sbjct: 169 GAEYMHITSTEEKRWIQQRIESGRATFN 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 2e-10
Identities = 86/628 (13%), Positives = 168/628 (26%), Gaps = 167/628 (26%)
Query: 49 HVNADEPEVVVSIMKLLARYRQTFKRDA-FIDIIGYRRH--GHNEGDDPSFTQPLMYEKI 105
H++ + E +L+ + F + D+ + E D + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSK---DAV 61
Query: 106 KQTKPLFEKYTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWE 165
T LF K QE+++ + + + L Y ++ P +
Sbjct: 62 SGTLRLFWTLLSK--QEEMVQKFVEEV--------LRINY------------KFLMSPIK 99
Query: 166 GFEKDTTLIQMPTTGCDIAKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDW 225
++ +++ +L + +K + + L++ L + R +N L
Sbjct: 100 TEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLID 156
Query: 226 AMA----EALALGTLLDSGHHIRL--------IGQ-DSKRGTFSHRHAVYFDQATGNTYT 272
+ +AL L ++ + +S + + Q N +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTS 215
Query: 273 PLHHIGAEAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVI----WEAQ-FGDFANNAQ- 326
H +SI E+ L Y N L++ A+ + F + +
Sbjct: 216 RSDHSSNI---KLRIHSIQAELRRLLKSKPY----ENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 327 -------AVFDQWISSARSKWNIDSGLVLLLPHGIEGQGPEHSSARPERFLELCSDSPRC 379
V D +S+A + + L H P+ L C
Sbjct: 269 LLTTRFKQVTDF-LSAATTT-------HISLDHHSMTLTPDEV-------KSLLLKYLDC 313
Query: 380 VELDMKKQLFDANWFVL---------YPSTPSTLFHALRRQLLLPFRRPLVVLTPKALLR 430
D+ +++ N L +T H +L L VL P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP----- 368
Query: 431 HPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIEARDAANLTEQI 490
+ R F+ LS+ F P + +L + + + D + ++
Sbjct: 369 -AEYRKMFDRLSV---FP---PSA-------HIPTILLS---LIWFDVIKSDVMVVVNKL 411
Query: 491 AIARLEQISPFPYRAFIND-------------------VSSYKNVKQVC-WCQSEPENFG 530
L + P I V Y K P
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 531 FWKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKHYLLAALNMEKKAF--KVFL-- 586
++ Y +IG H+L + E+ VFL
Sbjct: 472 YF-Y----------------SHIG--------------HHLKNIEHPERMTLFRMVFLDF 500
Query: 587 PWFLVKSAQGGIMWKVVNLCKRVLQVTR 614
+ K W LQ +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLK 528
Score = 56.4 bits (135), Expect = 3e-08
Identities = 72/468 (15%), Positives = 140/468 (29%), Gaps = 114/468 (24%)
Query: 425 PKALLRHPQVRSTFEDLSLDTKFRAYLPDTMADRNKDKVEKYILCSGKIYYDLIEARDAA 484
PK++L ++ + L T+ + ++ V+K++ +I Y
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTL-RLFWTLLSKQEEMVQKFVEEVLRINYKF------- 93
Query: 485 NLTEQIAIARLEQISP-FPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVM 543
L I + EQ P R +I N QV F KY +R+ +
Sbjct: 94 -LMSPI---KTEQRQPSMMTRMYIEQRDRLYNDNQV-----------FAKYNVSRLQPYL 138
Query: 544 EITT-----DPVCYI---GRDPSSVPASGLQAKHYL-LAALN----MEKKAFKVFLPWFL 590
++ P + G V SG K ++ L K FK+F W
Sbjct: 139 KLRQALLELRPAKNVLIDG-----VLGSG---KTWVALDVCLSYKVQCKMDFKIF--WLN 188
Query: 591 VKSAQ--GGIMWKVVNLCKRVLQVTRQPSWVQARASKWTPVERPRNPLN---RDSFLNGT 645
+K+ ++ + L ++ P+W R+ + ++ + + R +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQI-----DPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 646 FANYLEVMYDQWLQNPNSVHPSWAKYFAEEAMSAPSSIAIGNPTGQSS--NGVGSSFPRR 703
+ N L V+ + N + A + I + T + + ++
Sbjct: 243 YENCLLVLLNVQ--NAKAW----------NAFNLSCKILL--TTRFKQVTDFLSAATTTH 288
Query: 704 EETPIHGEFVNPDENINLSSEAAQLQNLLHV-YRDSGHLMANVDPLGFSTPFGKI----- 757
H + PDE +L L L +D + +P S +
Sbjct: 289 ISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGL 341
Query: 758 ------KTPDFKRVPTQI---YKNFAPLL---NFPDLNKSVTLPEDTKIGGDQSSLKISD 805
K + ++ T I P F L P I
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPSAHIP---------- 388
Query: 806 FIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNFYYSLNRISDD 853
L ++ + ++ + N + L E + S+ I +
Sbjct: 389 -TILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLE 434
Score = 47.9 bits (113), Expect = 1e-05
Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 69/268 (25%)
Query: 12 TIHIIINN-QVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQ 70
T HI +++ + T P E +S + K + D P V++
Sbjct: 286 TTHISLDHHSMTLT--PDEVKS-----LLLKYLDCRPQ----DLPREVLTTNPRR----- 329
Query: 71 TFKRDAFIDIIGYR-RHGHNEGDDPSFTQPLMYEKIKQT-----KPLFEKYTQKLLQEKV 124
+ II R G D + + +K+ L +K+
Sbjct: 330 -------LSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 125 ITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTG-CDI 183
+ + L + ++ K + + + P I
Sbjct: 380 VFPPSAHIPTIL----LSLIWFDVIKSDVMVVV-------NKLHKYSLVEKQPKESTISI 428
Query: 184 AKLQLLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEEN-SLDWAMAEALALGTLLDS--- 239
+ L +L K E LHRS+ N + ++ + LD
Sbjct: 429 PSIYL--ELKVKLENEY-ALHRSIVDHYNIPKTFDSDDLIPPY-----------LDQYFY 474
Query: 240 ---GHHIRLIGQDSKRGTFSHRHAVYFD 264
GHH++ I + F V+ D
Sbjct: 475 SHIGHHLKNIEHPERMTLFRM---VFLD 499
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 3e-10
Identities = 94/565 (16%), Positives = 168/565 (29%), Gaps = 220/565 (38%)
Query: 56 EVVVSI-MKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEK 114
E V+ + Q ++ F I+ G D+P+ L+ + F
Sbjct: 17 EHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGK--------FLG 66
Query: 115 YTQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLI 174
Y L++ +V + Q L + FE +
Sbjct: 67 YVSSLVEPS---------KVGQFDQVLN-------------------LCLTEFE--NCYL 96
Query: 175 QMPTTGCDI-AKLQLLADLVSKPPAEPFKLHRSLQ-----RVLNQRRKMIEENSLDWAMA 228
+ G DI A L A L+ + K ++ R++ +R + NS
Sbjct: 97 E----GNDIHA---LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS------ 143
Query: 229 EALALGTLLDSGHHIRLI----GQDSKRGTFSHRHAVYFD--QATGNTYTPLHHIGAEAG 282
AL + G + +L+ GQ G YF+ + TY L +G
Sbjct: 144 ---ALFRAVGEG-NAQLVAIFGGQ----GNTD----DYFEELRDLYQTYHVL--VGD--- 186
Query: 283 KFHVYNSILNEMAALS------FEYGYSLV----------DPNFLV--------IWEAQF 318
L+E+ + F G +++ D ++L+ I Q
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 319 --------------GDFANNAQ-----------AVFDQWISSARSKW-----NIDSGLVL 348
G+ + + AV I+ S W ++ + +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA---IAETDS-WESFFVSVRKAITV 302
Query: 349 LLPHGIEGQG--PEHSSARPERFLELCSD------SPRCVELDM-------KKQLFD--- 390
L G+ P +++ P LE + SP M ++Q+ D
Sbjct: 303 LFFIGVRCYEAYP--NTSLPPSILEDSLENNEGVPSP------MLSISNLTQEQVQDYVN 354
Query: 391 -------------------ANWFVL--YPSTPSTLFHALRR--------QLLLPFRRPLV 421
A V+ P + L LR+ Q +PF
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--- 411
Query: 422 VLTPKALLRHPQVRSTFEDLSLDTKF-RAYLPDTMADRNKDKVEKYILCSG---KI-YYD 476
R + + F L + + F L NKD V+ + + +I YD
Sbjct: 412 --------RKLKFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 477 LIEARD----AANLTEQIA--IARL 495
+ D + +++E+I I RL
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRL 486
Score = 62.4 bits (151), Expect = 5e-10
Identities = 96/563 (17%), Positives = 150/563 (26%), Gaps = 189/563 (33%)
Query: 350 LPHGIEG-QGPEHSSARPE---RFLELCSDSPRCVELDMKKQLFDANWFVLYPSTPSTLF 405
LP EG + + E +FL S VE Q VL +
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSL---VEPSKVGQFDQ----VL-----NLCL 88
Query: 406 HALRRQLL-----------LPFRRPLVVLTPKALLR----------HPQVRSTFEDLSLD 444
L L ++ K L++ P + + L
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--- 145
Query: 445 TKFRAYLPDTMADRNKDKVEKYILCSG------------KIY--Y-----DLIEARDAAN 485
FRA ++ + G +Y Y DLI+ +A
Sbjct: 146 --FRA------VGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF--SAE 193
Query: 486 LTEQIAIARLEQISPFPYRAFINDVSSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEI 545
++ L+ F + ++ W + P
Sbjct: 194 TLSELIRTTLDAEKVFT-QGL--NILE--------WLE-NPS------------------ 223
Query: 546 TTDPVCYIGRDPSSVPASGL-QAKHYLLAA--LNMEKKAFKVFLPWFLVKSAQGGIM--- 599
T Y+ P S P G+ Q HY++ A L + +L S G++
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLVTAV 281
Query: 600 -------WKVVNLCKRVLQVTRQPSWVQARASKWTPVERPRNPLNRDSFLNGTFANYLEV 652
W+ + V + ++ R + P
Sbjct: 282 AIAETDSWE--SFFVSVRKAITVLFFIGVRCYEAYPNT---------------------- 317
Query: 653 MYDQWLQNPNSVHPSWAKYFAEEAMSAPS---SIAIGNPTGQSSNGVG---SSFPRREET 706
S+ PS + E PS SI Q + V S P
Sbjct: 318 ----------SLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLP--AGK 364
Query: 707 PIHGEFVNPDENINLSSEAAQLQNLLHVYR----DSGHLMANVDP-----LGFSTPFGKI 757
+ VN +N+ +S L L R SG + + P L FS F +
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPV 423
Query: 758 KTPDF-----KRVPTQIYKNFAP---LLNFPDLNKSVTLPEDTKIGGDQSSLKISDFIER 809
+P F I K+ N D+ V DT G D L ER
Sbjct: 424 ASP-FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLS-GSISER 478
Query: 810 L-ESVYCGPV------GVEITHI 825
+ + + PV + THI
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHI 501
Score = 49.3 bits (117), Expect = 6e-06
Identities = 60/367 (16%), Positives = 103/367 (28%), Gaps = 151/367 (41%)
Query: 15 IIINNQVGFTANPWETRSSMYC--TCVAKVIGAPV---------FHVNADEPEVVVSIMK 63
++ +GFT P E RS + ++ A F V+ + +
Sbjct: 250 VVTAKLLGFT--PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK------AIT 301
Query: 64 LLARYRQTFKRDAFIDIIGYRRHG-----------------HNEGDDPSFTQPLMY---- 102
+L F IG R + +NEG PS P M
Sbjct: 302 VL-----------FF--IGVRCYEAYPNTSLPPSILEDSLENNEGV-PS---P-MLSISN 343
Query: 103 EKIKQTKPLFEKYTQKLLQEK-------------VIT---EDMVTLEVQAYQQKLESEYE 146
+Q + K L K V++ + + L + + K S +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 147 KSKE---------ATRFD--SAPW-------------IDVPWEGFEKDTTLIQMP----T 178
+S+ + RF ++P+ D+ + IQ+P
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 179 TGCDIAKLQ--LLADLVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTL 236
G D+ L + +V I + W +
Sbjct: 464 DGSDLRVLSGSISERIV----------------------DCIIRLPVKWETTTQFKATHI 501
Query: 237 LDSGHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAA 296
LD G G S G +HR+ TG + I AG + N ++
Sbjct: 502 LDFGP-----GGASGLGVLTHRNK----DGTG-----VRVI--VAGTLDI-NP--DD--- 539
Query: 297 LSFEYGY 303
+YG+
Sbjct: 540 ---DYGF 543
Score = 37.3 bits (86), Expect = 0.023
Identities = 43/199 (21%), Positives = 62/199 (31%), Gaps = 63/199 (31%)
Query: 135 QAYQQK---LESEYEKSKEATRFDSAPWIDVPWEGFEKDTTLIQMPTTGCDIAKLQLLAD 191
Q Q++ ++ Y+ SK A + DV W D T G I D
Sbjct: 1624 QGSQEQGMGMD-LYKTSKAA-Q-------DV-WN--RADNHFKD--TYGFSIL------D 1663
Query: 192 LVSKPPAEPFKLHRSLQRVLNQRRKMIEENSLDWAMAEALALGTLLDSGHHIRLIGQDSK 251
+V P +H ++ K I EN AM + L + + I + S
Sbjct: 1664 IVINNPVN-LTIHFG-----GEKGKRIRENYS--AMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 252 RGTFSHRHAVYFDQATGNT--------YTPLHHIGAE---------AGKFHVYNSILNEM 294
TF + AT T + ++ AG H S L E
Sbjct: 1716 SYTFRSEKGLLS--ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG--H---S-LGEY 1767
Query: 295 AAL-------SFEYGYSLV 306
AAL S E +V
Sbjct: 1768 AALASLADVMSIESLVEVV 1786
Score = 31.9 bits (72), Expect = 1.0
Identities = 24/234 (10%), Positives = 57/234 (24%), Gaps = 63/234 (26%)
Query: 638 RDSFLNGTFANYLEVMYDQWLQNPNSVHPSWAKY--FAEEAMSAPSSIAIGNPTGQSSNG 695
++ F D P + K+ + +
Sbjct: 34 QEQFNKILPEPTEGFAADD---EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 696 VGSSFPRREETPIH---GEFVNPDENINLSSEAAQLQNLLHVYRDSGHLMA-NVDPLGFS 751
+ + + IH + + ++ + + + L+ Y + + D S
Sbjct: 91 FENCYLEGND--IHALAAKLLQEND-----TTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 752 TPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKSVTLPEDTKIGGDQSS-------LK-- 802
F + + + + F GG Q + L+
Sbjct: 144 ALFRAVGEGNAQ-----LVAIF---------------------GG-QGNTDDYFEELRDL 176
Query: 803 -------ISDFIER----LESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNFYY 845
+ D I+ L + + E + + WL+ P+ Y
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 38.4 bits (90), Expect = 0.009
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 25/159 (15%)
Query: 13 IHIIINNQVG-FTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQT 71
I I NN+ G T+ R++ + P V+ + V + A Y ++
Sbjct: 194 IFICENNRYGMGTS---VERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRS 250
Query: 72 FKRDAFIDIIGYRRHGHNEGDDPSFTQPLMY------EKIKQTK-PLFEKYTQKLLQEKV 124
K +++ YR HGH DP + Y ++++ P+ +++ +
Sbjct: 251 GKGPILMELQTYRYHGHEMS-DPGVS----YRTREEIQEVRSKSDPI-MLLKDRMVNSNL 304
Query: 125 ITEDMVTLEVQAYQQKLESEYEKSKEATRF-DSAPWIDV 162
+ + E++ ++ E E +A +F + P +
Sbjct: 305 ASVE----ELKEIDVEVRKEIE---DAAQFATADPEPPL 336
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 34.0 bits (79), Expect = 0.16
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 313 IWEAQFGDFANNAQAVFDQWISSA-----RSKWNIDSGLVLLLPHGIEGQGPEHSSARPE 367
+ E QF D+ FDQ +S RS + LV+ +P G +G H S PE
Sbjct: 78 VAEIQFADYIFPG---FDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPE 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.23
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 11/29 (37%)
Query: 133 EVQAYQQKLESE---YEKSKEATRFDSAP 158
E QA + KL++ Y DSAP
Sbjct: 18 EKQALK-KLQASLKLYAD-------DSAP 38
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 33.6 bits (78), Expect = 0.24
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 8/60 (13%)
Query: 313 IWEAQFGDFANNAQAVFDQWISSA-----RSKWNIDSGLVLLLPHGIEGQGPEHSSARPE 367
+ E QF F D R+ + + P G PE S E
Sbjct: 77 VPEIQFFGFVYEV---MDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLE 133
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 33.0 bits (76), Expect = 0.41
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 313 IWEAQFGDFANNAQAVFDQWISSA-----RSKWNIDSGLVLLLPHGIEGQGPEHSSARPE 367
+ E QF DF D+ ++ RS N + LV+ P G +G + S PE
Sbjct: 125 VAEIQFVDFIWLG---ADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPE 181
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 31.4 bits (72), Expect = 1.1
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 315 EAQFGDFANNAQAVFDQWISSA-----RSKWNIDSGLVLLLPHGIEGQGPEHSSARPE 367
E QF D+ A DQ +S RS + L L +P G G + S PE
Sbjct: 81 EIQFADYFYPA---SDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPE 135
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 61
Score = 28.4 bits (63), Expect = 1.2
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 606 CKRVLQVTRQPSW 618
+R VT++P+W
Sbjct: 15 SRRAFLVTKKPNW 27
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 29.7 bits (66), Expect = 5.4
Identities = 13/87 (14%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 46 PVFHVNADEPEVVVSIMKLLARYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKI 105
V+ +D+ + ++L +++ ++ RR + + ++ EK+
Sbjct: 108 KVYQKASDKSGFTAQVERMLTEFKR-----YCLEPEDIRRMAESGTASEYRGERVLSEKL 162
Query: 106 KQTKPLFEKYTQKLLQEKVITEDMVTL 132
L+++ + L + + +ED +TL
Sbjct: 163 HDLSILYQQMEKSLADQYLHSEDYLTL 189
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima}
SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Length = 364
Score = 29.4 bits (67), Expect = 5.7
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 828 IRRRRWLKAEVEKPNFY 844
+ ++A V K FY
Sbjct: 340 FPGGKLVEALVVKKPFY 356
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.2 bits (65), Expect = 7.9
Identities = 9/92 (9%), Positives = 22/92 (23%), Gaps = 3/92 (3%)
Query: 280 EAGKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQWISSARSK 339
GK H N + + G+ N +++ E +
Sbjct: 60 VFGKTHPVNDTIENLRQAYLRMGFE-EYINPVIVDERDI--YKQFGPEAMAVLDRCFYLA 116
Query: 340 WNIDSGLVLLLPHGIEGQGPEHSSARPERFLE 371
+ L + + + + L+
Sbjct: 117 GLPRPDVGLSDEKISQIEKLGIKVSEHKESLQ 148
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 29.1 bits (65), Expect = 8.0
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 282 GKFHVYNSILNEMAALSFEYGYSLVDPNFLVIWEAQFGDFANNAQAVFDQ 331
GK H + + + G+S V +V F A AV D+
Sbjct: 44 GKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLDR 93
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine
nucleotide exchang factor, GTPA signaling protein; 2.08A
{Mus musculus}
Length = 288
Score = 28.4 bits (63), Expect = 8.8
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 93 DPSFTQPLMYEKIKQTKPLFEKYTQKL-----LQEKVITEDMVTLEVQAYQQKLESEYEK 147
P +Y + + F+++ + ++IT + + YQQ+L+ Y K
Sbjct: 220 AEIPADPKLYRHHNKLRLCFKEFIMRCGEAVEKNRRLITAEQ-----REYQQELKKNYNK 274
Query: 148 SKE 150
++
Sbjct: 275 LRD 277
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_B* 2o01_B* 2wsc_B* 2wse_B* 2wsf_B*
3lw5_B*
Length = 740
Score = 28.6 bits (63), Expect = 9.8
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 654 YDQWLQNPNSVHPS----WAKYFAEEAMSAPSSIAIGNPTGQSSNGV 696
++QW+Q+P + P W F + A+ A + NP + +GV
Sbjct: 73 FEQWVQDPVNTRPIAHAIWDPQFGKAAVDAFTQAGASNPVDIAYSGV 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,507,638
Number of extensions: 829955
Number of successful extensions: 1702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1662
Number of HSP's successfully gapped: 39
Length of query: 856
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 754
Effective length of database: 3,853,851
Effective search space: 2905803654
Effective search space used: 2905803654
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)