RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4209
(856 letters)
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 53.0 bits (126), Expect = 7e-08
Identities = 23/141 (16%), Positives = 52/141 (36%)
Query: 11 GTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLARYRQ 70
+ I NN + + S A G P + V+ + ++K +
Sbjct: 191 PAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERAR 250
Query: 71 TFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVITEDMV 130
+ + +++ YR H+ DD S +P + K ++ + L + E+
Sbjct: 251 RGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWE 310
Query: 131 TLEVQAYQQKLESEYEKSKEA 151
+ + +LE ++++EA
Sbjct: 311 EDVREEIRAELERGLKEAEEA 331
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 49.5 bits (117), Expect = 1e-06
Identities = 20/156 (12%), Positives = 50/156 (32%)
Query: 7 YNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLA 66
Y ++++ N T S G V+ ++ V + + A
Sbjct: 230 YRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA 289
Query: 67 RYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPLMYEKIKQTKPLFEKYTQKLLQEKVIT 126
+ + I+ + YR H+ DDPS +P + Q L++ +
Sbjct: 290 ERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWS 349
Query: 127 EDMVTLEVQAYQQKLESEYEKSKEATRFDSAPWIDV 162
E+ ++ + + +++++ +
Sbjct: 350 EEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSA 385
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 48.3 bits (114), Expect = 2e-06
Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 1/146 (0%)
Query: 7 YNTHGTIHIIINNQVGFTANPWETRSSMYCTCVAKVIGAPVFHVNADEPEVVVSIMKLLA 66
I NN + E G V+ ++ V + K
Sbjct: 205 TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEAR 264
Query: 67 RYRQTFKRDAFIDIIGYRRHGHNEGDDPSFTQPL-MYEKIKQTKPLFEKYTQKLLQEKVI 125
R + I+ + YR + DD S + + + + LL +
Sbjct: 265 RRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWW 324
Query: 126 TEDMVTLEVQAYQQKLESEYEKSKEA 151
E+ + ++K+ +E+++
Sbjct: 325 DEEQEKAWRKQSRRKVMEAFEQAERK 350
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 29.4 bits (66), Expect = 2.4
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 654 YDQWLQNPNSVHPS----WAKYFAEEAMSAPSSIAIGNPTGQSSNGV 696
++QW+Q+P + P W F + A+ A + NP + +GV
Sbjct: 73 FEQWVQDPVNTRPIAHAIWDPQFGKAAVDAFTQAGASNPVDIAYSGV 119
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase,
C-terminal domain {Bacillus stearothermophilus,
maltogenic alpha-amylase [TaxId: 1422]}
Length = 110
Score = 27.3 bits (60), Expect = 2.9
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 240 GHHIRLIGQDSKRGTFSHRHAVYFDQATGNTYTPLHHIGAEAGKFHVYNSILNEMAALSF 299
G I L G + G +S + + A G + + + + A +
Sbjct: 21 GDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLA---------PNYPDWFYVFSVPAGKTI 71
Query: 300 EYGYSLVDPNFLVIWE 315
++ + + + + WE
Sbjct: 72 QFKFFIKRADGTIQWE 87
>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 244
Score = 28.1 bits (62), Expect = 3.8
Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 22/188 (11%)
Query: 455 MADRNKDKVEKYI--LCSGKIYY--DLIEARDAANLTEQIAIARLEQISPFPYRAFINDV 510
D ++ + L Y D+ + + A+ + A I ++
Sbjct: 35 FGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDT-AVTAFGGLHVLVNNAGILNI 93
Query: 511 SSYKNVKQVCWCQSEPENFGFWKYVQARMCSVMEITTDPVCYIGRDPSSVPASGLQAKHY 570
+ ++ W + N V + I S A
Sbjct: 94 GTIEDYALTEWQRILDVNLTGVFLGI--RAVVKPMKEAGRGSIINISSIEG----LAGTV 147
Query: 571 LLAALNMEKKAFKVFLPWFLVKSAQGGIMWKVVNLCKRVLQVTRQPSWVQARASKWTPVE 630
K A + ++ GI V ++ P V+ + W P +
Sbjct: 148 ACHGYTATKFAVRGLTKSTALELGPSGIR--VNSIH---------PGLVKTPMTDWVPED 196
Query: 631 RPRNPLNR 638
+ L R
Sbjct: 197 IFQTALGR 204
>d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus
subtilis [TaxId: 1423]}
Length = 458
Score = 28.0 bits (61), Expect = 5.6
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 21/83 (25%)
Query: 44 GAPVFHVNADEPEVVVSIMKLL----------ARYRQTFKRDAFIDIIGYRRHGHNEGD- 92
GA ++ + D S +KLL Y F + D G + G+
Sbjct: 32 GAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENYS--FTTEVRTD--GTLKGKKLNGNL 87
Query: 93 ------DPSFTQPLMYEKIKQTK 109
DP+ + + K
Sbjct: 88 YLKGKGDPTLLPSDFDKMAEILK 110
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 27.0 bits (59), Expect = 5.8
Identities = 19/119 (15%), Positives = 46/119 (38%)
Query: 729 QNLLHVYRDSGHLMANVDPLGFSTPFGKIKTPDFKRVPTQIYKNFAPLLNFPDLNKSVTL 788
+ +L V + +DP G S P+ K+K + ++ P+ N++
Sbjct: 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73
Query: 789 PEDTKIGGDQSSLKISDFIERLESVYCGPVGVEITHIKNIRRRRWLKAEVEKPNFYYSL 847
+ S++I D+ + + G + I+ ++ W K ++ Y+++
Sbjct: 74 QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNV 132
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 111
Score = 26.2 bits (58), Expect = 7.2
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 102 YEKIKQ---TKPLFEKY--TQKLLQEKVITEDMVTLEVQAYQQKLESEYEKSKEATRFDS 156
+ I +F Y Q+ +Q+ T M QA + + + + + F +
Sbjct: 28 KDAIAADAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEGFGKQIQGNSLLSEFFT 87
Query: 157 A 157
Sbjct: 88 K 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,314,200
Number of extensions: 159635
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 13
Length of query: 856
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 763
Effective length of database: 1,130,706
Effective search space: 862728678
Effective search space used: 862728678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)