Query psy4210
Match_columns 71
No_of_seqs 122 out of 629
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 19:41:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450|consensus 100.0 3.4E-32 7.3E-37 225.5 2.3 66 1-66 365-430 (1017)
2 COG0567 SucA 2-oxoglutarate de 100.0 2.4E-30 5.3E-35 215.5 4.1 68 1-68 289-356 (906)
3 KOG0451|consensus 100.0 1.7E-29 3.7E-34 207.0 3.7 67 1-67 274-349 (913)
4 PRK12270 kgd alpha-ketoglutara 99.9 6.3E-29 1.4E-33 210.3 3.2 67 1-67 610-677 (1228)
5 cd02016 TPP_E1_OGDC_like Thiam 99.9 3.2E-24 6.9E-29 158.9 3.8 66 1-66 104-169 (265)
6 TIGR00239 2oxo_dh_E1 2-oxoglut 99.9 2.6E-24 5.6E-29 179.8 3.3 66 1-66 306-372 (929)
7 PRK09404 sucA 2-oxoglutarate d 99.9 7.5E-23 1.6E-27 170.8 3.5 66 1-66 305-371 (924)
8 PF00676 E1_dh: Dehydrogenase 98.8 7E-10 1.5E-14 82.1 0.4 54 4-65 97-150 (300)
9 PLN02269 Pyruvate dehydrogenas 98.1 1.1E-06 2.3E-11 67.5 1.3 56 4-65 132-187 (362)
10 cd02000 TPP_E1_PDC_ADC_BCADC T 97.6 2E-05 4.2E-10 57.7 1.3 55 4-64 98-152 (293)
11 TIGR03182 PDH_E1_alph_y pyruva 97.5 3.3E-05 7.1E-10 57.6 0.9 54 6-65 106-159 (315)
12 PLN02374 pyruvate dehydrogenas 95.2 0.0064 1.4E-07 48.1 0.3 57 7-64 191-249 (433)
13 KOG0225|consensus 94.4 0.019 4.2E-07 45.8 1.4 45 14-64 169-213 (394)
14 TIGR03181 PDH_E1_alph_x pyruva 94.3 0.022 4.8E-07 43.1 1.3 47 12-64 124-170 (341)
15 PF13292 DXP_synthase_N: 1-deo 94.1 0.022 4.7E-07 43.4 1.0 38 18-61 119-156 (270)
16 COG1154 Dxs Deoxyxylulose-5-ph 92.8 0.056 1.2E-06 45.4 1.5 41 17-63 122-162 (627)
17 PLN02225 1-deoxy-D-xylulose-5- 91.5 0.079 1.7E-06 44.6 0.9 39 18-62 197-235 (701)
18 CHL00149 odpA pyruvate dehydro 90.5 0.1 2.3E-06 39.7 0.7 54 10-64 128-183 (341)
19 cd02007 TPP_DXS Thiamine pyrop 89.2 0.19 4.1E-06 35.1 1.1 41 17-63 82-122 (195)
20 PRK12315 1-deoxy-D-xylulose-5- 86.3 0.28 6E-06 39.7 0.6 49 10-64 113-161 (581)
21 PLN02234 1-deoxy-D-xylulose-5- 84.4 0.42 9E-06 39.9 0.8 41 17-63 184-224 (641)
22 COG1071 AcoA Pyruvate/2-oxoglu 82.9 0.51 1.1E-05 37.1 0.7 46 14-64 140-185 (358)
23 PLN02790 transketolase 75.3 1.3 2.8E-05 36.5 0.8 44 17-63 112-162 (654)
24 TIGR00204 dxs 1-deoxy-D-xylulo 66.5 2.4 5.3E-05 34.7 0.6 43 15-63 116-158 (617)
25 PLN02582 1-deoxy-D-xylulose-5- 65.4 2.9 6.2E-05 35.2 0.8 42 17-64 151-192 (677)
26 KOG4450|consensus 64.1 1.9 4.2E-05 31.2 -0.3 23 35-57 21-43 (168)
27 PRK05444 1-deoxy-D-xylulose-5- 61.5 4.4 9.6E-05 32.6 1.3 41 17-62 124-164 (580)
28 PRK12753 transketolase; Review 57.1 4.4 9.6E-05 33.6 0.6 44 17-63 121-171 (663)
29 PTZ00089 transketolase; Provis 53.4 5 0.00011 33.1 0.3 44 17-63 123-173 (661)
30 TIGR00232 tktlase_bact transke 52.1 7.3 0.00016 32.2 1.1 23 40-63 145-167 (653)
31 PF15230 SRRM_C: Serine/argini 51.6 5.3 0.00011 25.1 0.1 8 8-15 44-51 (66)
32 PRK12754 transketolase; Review 46.1 9.1 0.0002 32.0 0.7 24 39-63 148-171 (663)
33 KOG0523|consensus 44.9 18 0.0004 30.9 2.4 29 35-66 141-169 (632)
34 COG3394 Uncharacterized protei 44.7 4.2 9E-05 31.2 -1.3 47 13-59 134-189 (257)
35 cd02017 TPP_E1_EcPDC_like Thia 43.1 12 0.00025 29.9 0.9 26 34-62 146-171 (386)
36 PRK05899 transketolase; Review 42.2 10 0.00022 30.7 0.5 43 17-62 125-174 (624)
37 cd02012 TPP_TK Thiamine pyroph 39.5 13 0.00028 26.6 0.6 39 18-62 113-151 (255)
38 TIGR02023 BchP-ChlP geranylger 32.2 28 0.00061 25.7 1.4 16 41-56 266-286 (388)
39 PF03881 Fructosamin_kin: Fruc 31.7 25 0.00053 26.2 1.1 13 34-46 182-194 (288)
40 PF13882 Bravo_FIGEY: Bravo-li 31.4 16 0.00034 23.7 -0.0 14 39-52 70-83 (90)
41 PRK07588 hypothetical protein; 29.7 34 0.00075 25.0 1.5 17 40-56 280-301 (391)
42 KOG2232|consensus 27.9 46 0.001 28.7 2.1 36 23-60 67-102 (734)
43 PF01494 FAD_binding_3: FAD bi 27.8 34 0.00073 23.5 1.1 17 40-56 292-313 (356)
44 PRK06753 hypothetical protein; 27.7 38 0.00083 24.4 1.5 17 40-56 271-292 (373)
45 TIGR02028 ChlP geranylgeranyl 25.3 43 0.00094 25.2 1.4 16 41-56 272-292 (398)
46 PRK09126 hypothetical protein; 24.7 39 0.00086 24.5 1.1 17 40-56 281-302 (392)
47 PRK11445 putative oxidoreducta 24.2 49 0.0011 24.2 1.5 16 41-56 266-286 (351)
48 PLN00093 geranylgeranyl diphos 23.3 44 0.00095 26.1 1.1 16 41-56 311-331 (450)
49 TIGR01988 Ubi-OHases Ubiquinon 23.3 45 0.00097 23.8 1.1 17 40-56 277-298 (385)
50 PRK12571 1-deoxy-D-xylulose-5- 22.6 42 0.00091 27.8 1.0 40 17-62 126-165 (641)
51 PRK07236 hypothetical protein; 22.6 49 0.0011 24.3 1.2 16 41-56 307-327 (386)
52 PRK06475 salicylate hydroxylas 22.5 44 0.00096 24.7 1.0 17 40-56 293-314 (400)
53 PF15380 DUF4607: Domain of un 22.3 33 0.0007 26.5 0.2 11 6-16 85-95 (265)
54 PRK08163 salicylate hydroxylas 21.2 54 0.0012 23.8 1.2 17 40-56 287-308 (396)
55 COG3231 Aph Aminoglycoside pho 21.1 44 0.00095 25.9 0.7 10 41-50 186-195 (266)
56 KOG1116|consensus 20.5 44 0.00095 28.3 0.7 14 47-60 241-254 (579)
57 PF07521 RMMBL: RNA-metabolisi 20.2 48 0.001 18.0 0.6 7 41-47 36-42 (43)
58 PRK08338 2-oxoglutarate ferred 20.0 54 0.0012 22.2 0.9 16 39-57 1-16 (170)
No 1
>KOG0450|consensus
Probab=99.97 E-value=3.4e-32 Score=225.47 Aligned_cols=66 Identities=35% Similarity=0.541 Sum_probs=64.5
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH 66 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph 66 (71)
|+++|++|||||||+||||+|||||+|++.+|.+++|+|.|||||||||||||||||||.||+||.
T Consensus 365 i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~ 430 (1017)
T KOG0450|consen 365 ITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPS 430 (1017)
T ss_pred eEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999995
No 2
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.96 E-value=2.4e-30 Score=215.50 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=65.1
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCcCcc
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHSQ 68 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph~~ 68 (71)
|+++|++||||||+|||||+|++||+|+.+.|.+.+++|||+|||||||+|||||+||||||+++...
T Consensus 289 v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gys 356 (906)
T COG0567 289 VHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYS 356 (906)
T ss_pred eEEEecCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcc
Confidence 68999999999999999999999999999999888999999999999999999999999999998653
No 3
>KOG0451|consensus
Probab=99.95 E-value=1.7e-29 Score=207.04 Aligned_cols=67 Identities=28% Similarity=0.394 Sum_probs=62.9
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccCC---------CCCeEEeEeeecchhccCcchhHHhhhhccCcCc
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDN---------AGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHS 67 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~---------~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph~ 67 (71)
+|++|++|||||||||||+|||||+||..++++ .++.||++++||||||+|||||+||++||++||-
T Consensus 274 lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHF 349 (913)
T KOG0451|consen 274 LHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHF 349 (913)
T ss_pred eEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCce
Confidence 589999999999999999999999999988763 3789999999999999999999999999999995
No 4
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.95 E-value=6.3e-29 Score=210.27 Aligned_cols=67 Identities=24% Similarity=0.262 Sum_probs=61.8
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccCC-CCCeEEeEeeecchhccCcchhHHhhhhccCcCc
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDN-AGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHS 67 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~-~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph~ 67 (71)
|.|+|++|||||||||||++|.+|||||.++.. ++..||||+|||||||+|||||+||||||+|..-
T Consensus 610 ~~v~laaNPSHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y 677 (1228)
T PRK12270 610 IKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGY 677 (1228)
T ss_pred eEEEEecCchhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCC
Confidence 579999999999999999999999999998743 3579999999999999999999999999999763
No 5
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.89 E-value=3.2e-24 Score=158.89 Aligned_cols=66 Identities=29% Similarity=0.402 Sum_probs=61.8
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH 66 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph 66 (71)
|+++|++||||||+++||++|++||+|++..+.++++.++|.+||||||+|||+++|+|||++||.
T Consensus 104 ~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~ 169 (265)
T cd02016 104 VHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPG 169 (265)
T ss_pred eEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcC
Confidence 478999999999999999999999999997666677899999999999999999999999999985
No 6
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.89 E-value=2.6e-24 Score=179.76 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=61.0
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccC-CCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTND-NAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH 66 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d-~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph 66 (71)
++++|++||||||+||||++|++||+|++.++ .+++++++|++||||||+|||+++|+|||+.|+.
T Consensus 306 ~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~ 372 (929)
T TIGR00239 306 VHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRG 372 (929)
T ss_pred ceeeecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcC
Confidence 47899999999999999999999999999765 5577899999999999999999999999998875
No 7
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.86 E-value=7.5e-23 Score=170.75 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=62.1
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccC-CCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTND-NAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH 66 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d-~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph 66 (71)
||+++++||||||+|+||++|++||+|++.++ .+++++++|++||||||+|||+++|+|||+.|+.
T Consensus 305 mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~ 371 (924)
T PRK09404 305 VHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRG 371 (924)
T ss_pred eEeeccCCccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcC
Confidence 58899999999999999999999999999877 6778899999999999999999999999999875
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=98.83 E-value=7e-10 Score=82.07 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=44.6
Q ss_pred EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210 4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL 65 (71)
Q Consensus 4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp 65 (71)
...++|+|.+ .|++.|.++|.|.. +++.++|.+||||| ++||.++|+|||+.+.
T Consensus 97 ~~~~~~vg~~--~p~a~G~A~a~k~~-----~~~~v~v~~~GDga-~~qG~~~EalN~A~~~ 150 (300)
T PF00676_consen 97 LGASSPVGAQ--VPIAAGVALAIKYR-----GKDGVVVCFFGDGA-TSQGDFHEALNLAALW 150 (300)
T ss_dssp EEEESSTTTH--HHHHHHHHHHHHHT-----TSSEEEEEEEETGG-GGSHHHHHHHHHHHHT
T ss_pred eecccccccc--CccccchhHhhhhc-----CCceeEEEEecCcc-cccCccHHHHHHHhhc
Confidence 3445555555 99999999999954 46689999999999 9999999999998764
No 9
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=98.10 E-value=1.1e-06 Score=67.47 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=48.4
Q ss_pred EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210 4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL 65 (71)
Q Consensus 4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp 65 (71)
.+.+..|+|=.-.|++.|.+.|.|... ++.+++.+||||| ++||.++|+|||+.+.
T Consensus 132 ~~~~~~~~vG~~~p~A~G~A~A~k~~~-----~~~v~v~~~GDGa-~~eG~~~Ealn~A~~~ 187 (362)
T PLN02269 132 NFYGGHGIVGAQVPLGAGLAFAQKYNK-----EENVAFALYGDGA-ANQGQLFEALNIAALW 187 (362)
T ss_pred CccccCchhhccccHHHHHHHHHHHhC-----CCCeEEEEECCCC-cccCHHHHHHHHhhcc
Confidence 456677889999999999999999863 3468999999999 8999999999998764
No 10
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=97.64 E-value=2e-05 Score=57.69 Aligned_cols=55 Identities=7% Similarity=0.023 Sum_probs=46.8
Q ss_pred EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
.+.+..+++-..-|+++|.+.|.+.... +...|.++||||| +||+++|+|++...
T Consensus 98 ~~~~~~g~lG~~~p~a~G~a~a~k~~~~-----~~~vv~~~GDGa~-~~g~~~E~l~~A~~ 152 (293)
T cd02000 98 NFFGGNGIVGGQVPLAAGAALALKYRGE-----DRVAVCFFGDGAT-NEGDFHEALNFAAL 152 (293)
T ss_pred CccccccccccchhHHHHHHHHHHHhCC-----CCEEEEEeCCCcc-ccchHHHHHHHHHh
Confidence 4667889999999999999999987642 3478899999998 79999999998754
No 11
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=97.51 E-value=3.3e-05 Score=57.57 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=42.7
Q ss_pred ecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210 6 SSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL 65 (71)
Q Consensus 6 ~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp 65 (71)
...-+.+=.--|+++|.+.|.|... .....|.++||||| +||.++|+|++..+.
T Consensus 106 ~~~~g~~G~~lp~AiGaa~A~~~~~-----~~~~vv~~~GDGa~-~~g~~~ealn~A~~~ 159 (315)
T TIGR03182 106 YGGHGIVGAQVPLATGLAFANKYRG-----NDNVTACFFGDGAA-NQGQFYESFNMAALW 159 (315)
T ss_pred ccCcCcccccccHHHHHHHHHHHhC-----CCCEEEEEeCCCcc-cccHHHHHHHHhhcc
Confidence 3444556667799999999998753 23477999999999 599999999997764
No 12
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=95.15 E-value=0.0064 Score=48.09 Aligned_cols=57 Identities=7% Similarity=-0.064 Sum_probs=42.4
Q ss_pred cCCCCccccCceeeeeeehhhhhccCC--CCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 7 SNPSHLELVYPVNLGKTKAFQFLTNDN--AGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 7 ~NPSHLEaVnPVv~Gk~RA~Q~~~~d~--~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
..-+.|-..-|+++|.+.|.+.+.... .......+.+.|||++. +|.++|+||+..+
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-eG~f~EaLn~A~~ 249 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCN-NGQFFECLNMAAL 249 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccc-cChHHHHHHHHHH
Confidence 444567778899999999988764311 11223457999999995 9999999998754
No 13
>KOG0225|consensus
Probab=94.45 E-value=0.019 Score=45.81 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=36.9
Q ss_pred ccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 14 LVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 14 aVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
|--|+-.|.+-|.++..++ -+++.+-||+| |-||-++|+|||+.|
T Consensus 169 AQiPLGaGia~A~kY~~~~-----~v~~alYGDGA-aNQGQ~fEa~NMA~L 213 (394)
T KOG0225|consen 169 AQIPLGAGIAFAQKYNRED-----AVCFALYGDGA-ANQGQVFEAFNMAAL 213 (394)
T ss_pred cCCCccccHHHHHHhccCC-----ceEEEEecccc-ccchhHHHHhhHHHH
Confidence 4458888888888776544 58999999999 679999999999754
No 14
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=94.26 E-value=0.022 Score=43.06 Aligned_cols=47 Identities=9% Similarity=-0.019 Sum_probs=33.9
Q ss_pred ccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 12 LELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 12 LEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
+=.--|.++|.+-|.+.... ....+.++|||||. +|.++|+|++...
T Consensus 124 vG~~lp~AiGaAla~k~~~~-----~~~vv~~~GDGa~~-~g~~~EaL~tA~~ 170 (341)
T TIGR03181 124 IGTQYLHAAGVAYALKLRGE-----DNVAVTYFGDGGTS-EGDFYEALNFAGV 170 (341)
T ss_pred HhcchhHHHhHHHHHHhhCC-----CCEEEEEecCCccc-cChHHHHHHHHhc
Confidence 33445677787777665432 23678899999996 9999999887654
No 15
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=94.10 E-value=0.022 Score=43.44 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=26.2
Q ss_pred eeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhh
Q psy4210 18 VNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLY 61 (71)
Q Consensus 18 Vv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~l 61 (71)
.++|.+.|+.... ...+|++|+ ||||++| |+.||.||-
T Consensus 119 aa~Gma~ar~l~~---~~~~vVaVI--GDGalt~-Gma~EALN~ 156 (270)
T PF13292_consen 119 AALGMAVARDLKG---EDRKVVAVI--GDGALTG-GMAFEALNN 156 (270)
T ss_dssp HHHHHHHHHHHHT---S---EEEEE--ETTGGGS-HHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCCcEEEEE--CCcchhH-HHHHHHHHH
Confidence 4567888875443 234565554 9999999 999999974
No 16
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=92.79 E-value=0.056 Score=45.36 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=30.5
Q ss_pred ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
.-++|.+.|+.... +.++|++|+ ||||++| |..+|.||--.
T Consensus 122 SaalG~A~A~~~~g---~~~~vvaVI--GDGAlt~-GmA~EALN~ag 162 (627)
T COG1154 122 SAALGMAKARDLKG---EDRNVVAVI--GDGALTG-GMAFEALNNAG 162 (627)
T ss_pred HHHhhHHHHHHhcC---CCCcEEEEE--CCccccc-hHHHHHHhhhh
Confidence 45678888876543 335566655 9999999 99999998654
No 17
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=91.50 E-value=0.079 Score=44.65 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=28.0
Q ss_pred eeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 18 VNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 18 Vv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
.++|.++|+.-.. +..+|++ +=||||++| |+.||.||-.
T Consensus 197 aalG~a~ardl~g---~~~~vva--VIGDGaltg-Gma~EaLN~~ 235 (701)
T PLN02225 197 AGLGLAVARDIKG---KRDRVVA--VIDNATITA-GQAYEAMSNA 235 (701)
T ss_pred HHHHHHHHHHhcC---CCCcEEE--EEcCcchhh-hhHHHHHhhh
Confidence 4678888874432 2345654 459999999 9999999843
No 18
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=90.52 E-value=0.1 Score=39.66 Aligned_cols=54 Identities=7% Similarity=-0.028 Sum_probs=35.4
Q ss_pred CCccccCceeeeeeehhhhhccC--CCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 10 SHLELVYPVNLGKTKAFQFLTND--NAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 10 SHLEaVnPVv~Gk~RA~Q~~~~d--~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
+.+=.--|.++|-+-|.+..... .....-..+.+-|||||. +|..+|+|++..+
T Consensus 128 g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~ 183 (341)
T CHL00149 128 AFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVL 183 (341)
T ss_pred hhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhh
Confidence 33444457778887776544320 011123567889999997 9999999998654
No 19
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=89.22 E-value=0.19 Score=35.15 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=28.9
Q ss_pred ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
|+.+|.+.|..... ...+| +.+-||++|. +|+++|.+++..
T Consensus 82 ~~A~G~Ala~k~~~---~~~~v--v~~~GDG~~~-eG~~~Eal~~A~ 122 (195)
T cd02007 82 SAALGMAVARDLKG---KKRKV--IAVIGDGALT-GGMAFEALNNAG 122 (195)
T ss_pred HHHHHHHHHHHHhC---CCCeE--EEEEcccccc-cChHHHHHHHHH
Confidence 55667776665432 12344 5678999999 999999998753
No 20
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=86.34 E-value=0.28 Score=39.72 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=34.1
Q ss_pred CCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 10 SHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 10 SHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
+|.=+-=|++.|.+.|++.+.. ..+ -+.+-||||+. +|..+|.||+...
T Consensus 113 g~~~~~ls~A~G~A~A~k~~~~---~~~--vv~~iGDG~~~-eG~~~EAln~A~~ 161 (581)
T PRK12315 113 GHTSTSIALATGLAKARDLKGE---KGN--IIAVIGDGSLS-GGLALEGLNNAAE 161 (581)
T ss_pred CcHHHHHHHHHHHHHHHHhcCC---CCe--EEEEECchhhh-cchHHHHHHHHHh
Confidence 3433445677888888765432 233 45677999998 6999999998653
No 21
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=84.37 E-value=0.42 Score=39.85 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=30.0
Q ss_pred ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
++.+|.+.|+... +...+|.+|+ |||++.+ |.+||.++...
T Consensus 184 S~a~GmA~a~~l~---g~~~~v~~vi--GDGel~e-G~~wEAl~~a~ 224 (641)
T PLN02234 184 SAGLGMAVGRDLK---GMNNSVVSVI--GDGAMTA-GQAYEAMNNAG 224 (641)
T ss_pred HHHHHHHHHHHhC---CCCCeEEEEE--ccchhhh-HHHHHHHHHHh
Confidence 4677888877543 2345676554 9999996 99999998754
No 22
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=82.92 E-value=0.51 Score=37.12 Aligned_cols=46 Identities=9% Similarity=0.051 Sum_probs=34.5
Q ss_pred ccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 14 LVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 14 aVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
+--|.+.|.+-|.+.+..+ .-+.+..=||+|-+ ||-.+|+|||..+
T Consensus 140 ~Q~~~AaG~A~a~k~~~~~----~~Va~~~~GDGat~-qG~FhEalN~A~v 185 (358)
T COG1071 140 TQIPLAAGAALALKYRGTK----DGVAVAFFGDGATN-QGDFHEALNFAAV 185 (358)
T ss_pred ccccHHHHHHHHHHHhCCC----CcEEEEEecCCccc-cchHHHHHHHHHH
Confidence 3456677777777766422 22788889999987 9999999999753
No 23
>PLN02790 transketolase
Probab=75.27 E-value=1.3 Score=36.48 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=30.9
Q ss_pred ceeeeeeehhhhhc---cCC----CCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 17 PVNLGKTKAFQFLT---NDN----AGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~---~d~----~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
|.+.|.+.|..... +.. ...+| +.+=|||++. +|+.+|++++..
T Consensus 112 ~~A~G~A~A~k~~~~~~~~~~~~~~~~~v--~~~~GDG~l~-eG~~~EAl~~A~ 162 (654)
T PLN02790 112 ANAVGLALAEKHLAARFNKPDHKIVDHYT--YCILGDGCQM-EGISNEAASLAG 162 (654)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccCCEE--EEEECcCccc-chHHHHHHHHHH
Confidence 67888888887531 111 12344 5667999998 699999999864
No 24
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=66.49 E-value=2.4 Score=34.66 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=31.9
Q ss_pred cCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 15 VYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 15 VnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
--|++.|.+.|.+.+. ...+++ .+-|||++. +|.+||.+++..
T Consensus 116 ~ls~a~G~A~a~~~~~---~~~~v~--~~~GDG~~~-eG~~~Ea~~~a~ 158 (617)
T TIGR00204 116 SISAGLGIAVAAEKKG---ADRKTV--CVIGDGAIT-AGMAFEALNHAG 158 (617)
T ss_pred HHHHHHHHHHHHHhhC---CCCEEE--EEECCcccc-cccHHHHHHHHH
Confidence 3478888888887553 234454 566999998 699999999754
No 25
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=65.40 E-value=2.9 Score=35.15 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=30.8
Q ss_pred ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
+++.|.+.|+.... ...+|+ .+=|||++.+ |.++|.++....
T Consensus 151 s~a~G~A~a~~~~~---~~~~v~--~viGDG~~~~-G~~~Ealn~a~~ 192 (677)
T PLN02582 151 SAGLGMAVGRDLKG---KKNNVV--AVIGDGAMTA-GQAYEAMNNAGY 192 (677)
T ss_pred HHHHHHHHHHHhcC---CCCEEE--EEecccccch-hhHHHHHHHHHh
Confidence 77888888865432 234554 6679999985 999999998653
No 26
>KOG4450|consensus
Probab=64.07 E-value=1.9 Score=31.22 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=17.8
Q ss_pred CCeEEeEeeecchhccCcchhHH
Q psy4210 35 GDRIAHPKLSNSSLMITLGIGLP 57 (71)
Q Consensus 35 ~~~vlpiliHGDAAf~GQGvv~E 57 (71)
...+|-=++||||+|.|+|--.+
T Consensus 21 Nh~~L~d~~~g~A~F~gr~~T~~ 43 (168)
T KOG4450|consen 21 NHFLLEDLINGDAVFIGRGTTLL 43 (168)
T ss_pred CchhhhhccCCceEEEEeceecc
Confidence 34567777899999999996544
No 27
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=61.54 E-value=4.4 Score=32.57 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=27.4
Q ss_pred ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
|+++|.+-|..... ....+|+ .+-||++| -+|+.+|.++..
T Consensus 124 ~~AvG~A~a~~~~~--~~~~~v~--~i~GDG~l-~eG~~~Eal~~A 164 (580)
T PRK05444 124 SAALGMAKARDLKG--GEDRKVV--AVIGDGAL-TGGMAFEALNNA 164 (580)
T ss_pred HHHHHHHHHHHhhC--CCCCeEE--EEEccccc-ccCHHHHHHHHH
Confidence 56677766664431 1234554 56799999 469999999864
No 28
>PRK12753 transketolase; Reviewed
Probab=57.06 E-value=4.4 Score=33.59 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=28.5
Q ss_pred ceeeeeeehhhhhcc---CC----CCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 17 PVNLGKTKAFQFLTN---DN----AGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~---d~----~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
|.+.|.+.|...... .. ...++ +.+-|||++. +|+++|.+++..
T Consensus 121 ~~AvG~A~A~k~~~~~~~~~~~~~~~~~v--~~~~GDGel~-EG~~~EA~~~A~ 171 (663)
T PRK12753 121 ANAVGLAIAERTLAAQFNRPGHEIVDHYT--YVFMGDGCLM-EGISHEVCSLAG 171 (663)
T ss_pred HHHHHHHHHHHHhhhhcCCccccccCCEE--EEEECcCccc-cHHHHHHHHHHH
Confidence 445667777655421 11 12344 4567999997 699999998753
No 29
>PTZ00089 transketolase; Provisional
Probab=53.43 E-value=5 Score=33.14 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=29.3
Q ss_pred ceeeeeeehhhhhcc---C----CCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 17 PVNLGKTKAFQFLTN---D----NAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~---d----~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
+.+.|.+.|+..... . ....+|. .+=|||++. +|+++|.+++..
T Consensus 123 s~AvG~A~a~k~~~~~~~~~~~~~~~~~v~--~v~GDG~l~-eG~~~EAl~~A~ 173 (661)
T PTZ00089 123 ANAVGLAIAEKHLAAKFNRPGHPIFDNYVY--VICGDGCLQ-EGVSQEALSLAG 173 (661)
T ss_pred HHHHHHHHHHHHHhhhccCccccCcCCEEE--EEECccchh-hHHHHHHHHHHH
Confidence 456777777765421 1 1134454 455999998 699999999754
No 30
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=52.12 E-value=7.3 Score=32.16 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=18.8
Q ss_pred eEeeecchhccCcchhHHhhhhcc
Q psy4210 40 HPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 40 piliHGDAAf~GQGvv~Etl~ls~ 63 (71)
-+.+=|||++. +|+++|.+++..
T Consensus 145 v~~~~GDG~l~-EG~~~EA~~~A~ 167 (653)
T TIGR00232 145 TYVFVGDGCLQ-EGISYEVASLAG 167 (653)
T ss_pred EEEEEcccccc-ccHHHHHHHHHH
Confidence 34566999997 899999999863
No 31
>PF15230 SRRM_C: Serine/arginine repetitive matrix protein C-terminus
Probab=51.60 E-value=5.3 Score=25.13 Aligned_cols=8 Identities=63% Similarity=0.879 Sum_probs=6.5
Q ss_pred CCCCcccc
Q psy4210 8 NPSHLELV 15 (71)
Q Consensus 8 NPSHLEaV 15 (71)
-|||||+=
T Consensus 44 SPS~lEaR 51 (66)
T PF15230_consen 44 SPSHLEAR 51 (66)
T ss_pred Cccccchh
Confidence 49999973
No 32
>PRK12754 transketolase; Reviewed
Probab=46.07 E-value=9.1 Score=32.04 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=19.6
Q ss_pred EeEeeecchhccCcchhHHhhhhcc
Q psy4210 39 AHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 39 lpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
--..+-|||++. +|+++|++++..
T Consensus 148 ~v~~~~GDGel~-EG~~~EA~~~A~ 171 (663)
T PRK12754 148 YTYAFMGDGCMM-EGISHEVCSLAG 171 (663)
T ss_pred EEEEEECcchhh-chHHHHHHHHHH
Confidence 345677999997 899999998853
No 33
>KOG0523|consensus
Probab=44.91 E-value=18 Score=30.86 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=23.6
Q ss_pred CCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210 35 GDRIAHPKLSNSSLMITLGIGLPMFLYTEILH 66 (71)
Q Consensus 35 ~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph 66 (71)
.++|.+|+ ||++.. .|++||+|.+..--+
T Consensus 141 ~~rv~~vl--GDG~~~-eG~~~EA~s~Ag~l~ 169 (632)
T KOG0523|consen 141 SNRVYCVL--GDGCLT-EGSVWEAMSLAGHLK 169 (632)
T ss_pred cceEEEEE--cCchhc-cchHHHHHhhhhhcc
Confidence 56888876 999998 699999999876443
No 34
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.66 E-value=4.2 Score=31.17 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=28.1
Q ss_pred cccCceeeeeeehhhhhcc-C-----CCCCeEEeE---eeecchhccCcchhHHhh
Q psy4210 13 ELVYPVNLGKTKAFQFLTN-D-----NAGDRIAHP---KLSNSSLMITLGIGLPMF 59 (71)
Q Consensus 13 EaVnPVv~Gk~RA~Q~~~~-d-----~~~~~vlpi---liHGDAAf~GQGvv~Etl 59 (71)
+.|.|++-+.++-.--... + ..+.+..+| ..+.+++|.|+|+..|.|
T Consensus 134 P~I~p~v~rlA~e~~i~lR~~~~~~~~~~~~~~~ir~~~~~f~~~fy~~~~s~~~f 189 (257)
T COG3394 134 PQIAPIVARLAEEYGIPLRIDRTWVSNAGELPAGIRSLLEGFLAAFYGEGVSEELF 189 (257)
T ss_pred chHHHHHHHHHhccCcccccCcccccccccccchhHHHHhhhhhhhhcccchHHHH
Confidence 4566776555443322111 1 123344454 449999999999999876
No 35
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=43.12 E-value=12 Score=29.92 Aligned_cols=26 Identities=8% Similarity=-0.140 Sum_probs=20.2
Q ss_pred CCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 34 AGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 34 ~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
...+|.+|+ ||+.+. .|+++|.+++.
T Consensus 146 ~~~rvyvll--GDGEl~-EG~vwEA~~~A 171 (386)
T cd02017 146 SDQKVWAFL--GDGEMD-EPESLGAIGLA 171 (386)
T ss_pred CCCeEEEEE--cccccc-cHHHHHHHHHH
Confidence 346677655 999997 69999998764
No 36
>PRK05899 transketolase; Reviewed
Probab=42.23 E-value=10 Score=30.74 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=27.0
Q ss_pred ceeeeeeehhhhhccC--C-----CCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 17 PVNLGKTKAFQFLTND--N-----AGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~d--~-----~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
|.++|.+.|....... . ...+| +.+-|||+|. .|.++|.++..
T Consensus 125 ~~AiG~Ala~~~~~~~~~~~~~~~~~~~v--~~v~GDG~~~-~g~~~Eal~~A 174 (624)
T PRK05899 125 ANAVGMALAEKYLAALFNRPGLDIVDHYT--YVLCGDGDLM-EGISHEACSLA 174 (624)
T ss_pred HHHHHHHHHHHHhhhhcCCccccCcCCeE--EEEECcchhh-chHHHHHHHHH
Confidence 5566777776543210 0 02344 5677999997 69999977753
No 37
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=39.45 E-value=13 Score=26.60 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=25.1
Q ss_pred eeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 18 VNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 18 Vv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
..+|.+-|..... ...+|+ .|=||++|. .|.++|.+...
T Consensus 113 ~avG~Ala~~~~~---~~~~v~--~i~GDG~~~-~G~~~eal~~a 151 (255)
T cd02012 113 VAVGMALAEKLLG---FDYRVY--VLLGDGELQ-EGSVWEAASFA 151 (255)
T ss_pred HHHHHHHHHHHhC---CCCEEE--EEECccccc-ccHHHHHHHHH
Confidence 4556655554432 234555 556999996 79999987654
No 38
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=32.17 E-value=28 Score=25.72 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.7
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
+++-|||| ++||||.+
T Consensus 266 v~lvGDAAg~v~P~tG~GI~~ 286 (388)
T TIGR02023 266 AMLVGDAAGLVTPASGEGIYF 286 (388)
T ss_pred EEEEeccccCcCCcccccHHH
Confidence 66779998 89999976
No 39
>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []. Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.
Probab=31.68 E-value=25 Score=26.24 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=6.3
Q ss_pred CCCeEEeEeeecc
Q psy4210 34 AGDRIAHPKLSNS 46 (71)
Q Consensus 34 ~~~~vlpiliHGD 46 (71)
.+.++-|-|||||
T Consensus 182 ~~~~~~PsLlHGD 194 (288)
T PF03881_consen 182 PGREPKPSLLHGD 194 (288)
T ss_dssp TTS----EEE-SS
T ss_pred cCCCCCceeeEcC
Confidence 3456789999999
No 40
>PF13882 Bravo_FIGEY: Bravo-like intracellular region
Probab=31.40 E-value=16 Score=23.72 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=10.9
Q ss_pred EeEeeecchhccCc
Q psy4210 39 AHPKLSNSSLMITL 52 (71)
Q Consensus 39 lpiliHGDAAf~GQ 52 (71)
-+...-=|++|+||
T Consensus 70 ~~~~FNEDGSFIGQ 83 (90)
T PF13882_consen 70 DTGQFNEDGSFIGQ 83 (90)
T ss_pred CCcccccccchhhh
Confidence 44666779999998
No 41
>PRK07588 hypothetical protein; Provisional
Probab=29.67 E-value=34 Score=25.02 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=13.8
Q ss_pred eEeeecchh-----ccCcchhH
Q psy4210 40 HPKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 40 piliHGDAA-----f~GQGvv~ 56 (71)
.+++=|||| |+|||..+
T Consensus 280 rv~LiGDAAH~~~P~~GqG~n~ 301 (391)
T PRK07588 280 RVALVGDAAACPSLLGGEGSGL 301 (391)
T ss_pred CEEEEEccccCCCCccCCcHHH
Confidence 367789999 78999865
No 42
>KOG2232|consensus
Probab=27.94 E-value=46 Score=28.73 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=25.3
Q ss_pred eehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhh
Q psy4210 23 TKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60 (71)
Q Consensus 23 ~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ 60 (71)
.|||.+...+.+++++.- +.=||.+++||+-.|.++
T Consensus 67 l~aRaFIvaep~gnRv~F--Vs~DagM~sq~lkleVi~ 102 (734)
T KOG2232|consen 67 LRARAFIVAEPQGNRVAF--VSLDAGMASQGLKLEVIE 102 (734)
T ss_pred eeeeeEEEecCCCceEEE--EecchhhhhhhhHHHHHH
Confidence 344444445556777764 456999999999988864
No 43
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=27.76 E-value=34 Score=23.53 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=13.0
Q ss_pred eEeeecchh-----ccCcchhH
Q psy4210 40 HPKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 40 piliHGDAA-----f~GQGvv~ 56 (71)
.|++=|||| ++|||+.+
T Consensus 292 rv~LiGDAAh~~~P~~GqG~n~ 313 (356)
T PF01494_consen 292 RVLLIGDAAHAMDPFSGQGINM 313 (356)
T ss_dssp TEEE-GGGTEEE-CCTSHHHHH
T ss_pred eeEEeccceeeecccccCCCCc
Confidence 366779999 78999865
No 44
>PRK06753 hypothetical protein; Provisional
Probab=27.69 E-value=38 Score=24.40 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=13.7
Q ss_pred eEeeecchh-----ccCcchhH
Q psy4210 40 HPKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 40 piliHGDAA-----f~GQGvv~ 56 (71)
.+++=|||| ++|||+.+
T Consensus 271 rv~LiGDAAh~~~P~~GqG~n~ 292 (373)
T PRK06753 271 RIVLLGDAAHATTPNMGQGAGQ 292 (373)
T ss_pred CEEEEecccccCCCCcCccHHH
Confidence 467889998 67999864
No 45
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=25.34 E-value=43 Score=25.23 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=12.9
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
+++=|||| ++|+||.+
T Consensus 272 ~llvGDAAg~v~P~tGeGI~~ 292 (398)
T TIGR02028 272 VALVGDAAGYVTKCSGEGIYF 292 (398)
T ss_pred EEEEEcCCCCCCcccccchHH
Confidence 44559998 89999976
No 46
>PRK09126 hypothetical protein; Provisional
Probab=24.70 E-value=39 Score=24.52 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=13.7
Q ss_pred eEeeecchh-----ccCcchhH
Q psy4210 40 HPKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 40 piliHGDAA-----f~GQGvv~ 56 (71)
.+++=|||| +.|||+.+
T Consensus 281 rv~LvGDAAh~~~P~~GqG~~~ 302 (392)
T PRK09126 281 RFALIGDAAVGMHPVTAHGFNL 302 (392)
T ss_pred ceEEEehhhhcCCCcccchhhh
Confidence 367889998 78999875
No 47
>PRK11445 putative oxidoreductase; Provisional
Probab=24.22 E-value=49 Score=24.22 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=13.8
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
+++=|||| ++|||+.+
T Consensus 266 vvlVGDAAg~i~P~tG~Gi~~ 286 (351)
T PRK11445 266 AFLIGEAAGFISPSSLEGISY 286 (351)
T ss_pred EEEEEcccCccCCccCccHHH
Confidence 78889998 78999876
No 48
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=23.33 E-value=44 Score=26.11 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.1
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
+++=|||| ++|+||.+
T Consensus 311 vlLvGDAAg~v~P~tGeGI~~ 331 (450)
T PLN00093 311 VALVGDAAGYVTKCSGEGIYF 331 (450)
T ss_pred cEEEeccccCCCccccccHHH
Confidence 44559998 99999976
No 49
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=23.25 E-value=45 Score=23.82 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=13.4
Q ss_pred eEeeecchh-----ccCcchhH
Q psy4210 40 HPKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 40 piliHGDAA-----f~GQGvv~ 56 (71)
.|++=|||| +.|||+.+
T Consensus 277 ~v~LiGDAah~~~P~~G~G~~~ 298 (385)
T TIGR01988 277 RLALIGDAAHTIHPLAGQGLNL 298 (385)
T ss_pred ceEEEecccccCCccccchhhh
Confidence 367889998 67999854
No 50
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=22.65 E-value=42 Score=27.79 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=26.7
Q ss_pred ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
++.+|.+-|.+... ...+|+ .+=|||+|. .|.++|.+++.
T Consensus 126 g~a~G~A~a~~~~~---~~~~v~--~v~GDG~~~-eG~~~Eal~~a 165 (641)
T PRK12571 126 SAALGFAKARALGQ---PDGDVV--AVIGDGSLT-AGMAYEALNNA 165 (641)
T ss_pred HHHHHHHHHHHHhC---CCCeEE--EEEeCchhh-cchHHHHHHHH
Confidence 44556666665442 234454 556999996 79999999764
No 51
>PRK07236 hypothetical protein; Provisional
Probab=22.64 E-value=49 Score=24.33 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=13.1
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
|++=|||| +.|||.+.
T Consensus 307 v~LiGDAAH~~~P~~GqG~n~ 327 (386)
T PRK07236 307 VALLGDAAFVARPHTAAGVAK 327 (386)
T ss_pred EEEEecccccCCCcchhhHHH
Confidence 67889999 68999864
No 52
>PRK06475 salicylate hydroxylase; Provisional
Probab=22.48 E-value=44 Score=24.73 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=13.4
Q ss_pred eEeeecchh-----ccCcchhH
Q psy4210 40 HPKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 40 piliHGDAA-----f~GQGvv~ 56 (71)
.+.+=|||| ++|||..+
T Consensus 293 rvvLiGDAAH~~~P~~GqG~n~ 314 (400)
T PRK06475 293 RTIFLGDASHAVTPFAAQGAAM 314 (400)
T ss_pred CEEEEecccccCCchhhhhHHH
Confidence 467789999 57999865
No 53
>PF15380 DUF4607: Domain of unknown function (DUF4607)
Probab=22.25 E-value=33 Score=26.49 Aligned_cols=11 Identities=55% Similarity=0.585 Sum_probs=8.2
Q ss_pred ecCCCCccccC
Q psy4210 6 SSNPSHLELVY 16 (71)
Q Consensus 6 ~~NPSHLEaVn 16 (71)
.-||.||||.-
T Consensus 85 svNp~~Lea~G 95 (265)
T PF15380_consen 85 SVNPIHLEAAG 95 (265)
T ss_pred ccCceeeecce
Confidence 35899999864
No 54
>PRK08163 salicylate hydroxylase; Provisional
Probab=21.19 E-value=54 Score=23.84 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=13.8
Q ss_pred eEeeecchh-----ccCcchhH
Q psy4210 40 HPKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 40 piliHGDAA-----f~GQGvv~ 56 (71)
.+++=|||| +.|||..+
T Consensus 287 rv~LiGDAAH~~~P~~GqG~n~ 308 (396)
T PRK08163 287 RVTLLGDAAHPMTQYMAQGACM 308 (396)
T ss_pred cEEEEecccccCCcchhccHHH
Confidence 477889998 78999875
No 55
>COG3231 Aph Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=21.06 E-value=44 Score=25.88 Aligned_cols=10 Identities=0% Similarity=-0.140 Sum_probs=8.1
Q ss_pred Eeeecchhcc
Q psy4210 41 PKLSNSSLMI 50 (71)
Q Consensus 41 iliHGDAAf~ 50 (71)
++.|||||..
T Consensus 186 Vv~HGDACLP 195 (266)
T COG3231 186 VVTHGDACLP 195 (266)
T ss_pred eeecCcccCc
Confidence 5789999964
No 56
>KOG1116|consensus
Probab=20.45 E-value=44 Score=28.34 Aligned_cols=14 Identities=7% Similarity=-0.107 Sum_probs=12.1
Q ss_pred hhccCcchhHHhhh
Q psy4210 47 SLMITLGIGLPMFL 60 (71)
Q Consensus 47 AAf~GQGvv~Etl~ 60 (71)
.+.+|+|+.+|.+|
T Consensus 241 v~vsGDGl~hEVlN 254 (579)
T KOG1116|consen 241 VCVSGDGLLHEVLN 254 (579)
T ss_pred EEecCCcCHHHhhh
Confidence 36789999999987
No 57
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=20.21 E-value=48 Score=18.02 Aligned_cols=7 Identities=0% Similarity=-0.097 Sum_probs=5.2
Q ss_pred Eeeecch
Q psy4210 41 PKLSNSS 47 (71)
Q Consensus 41 iliHGDA 47 (71)
+++|||.
T Consensus 36 ilVHGe~ 42 (43)
T PF07521_consen 36 ILVHGEP 42 (43)
T ss_dssp EEESSEH
T ss_pred EEecCCC
Confidence 5789974
No 58
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=20.04 E-value=54 Score=22.19 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=11.2
Q ss_pred EeEeeecchhccCcchhHH
Q psy4210 39 AHPKLSNSSLMITLGIGLP 57 (71)
Q Consensus 39 lpiliHGDAAf~GQGvv~E 57 (71)
|-|.|+|-| ||||+.=
T Consensus 1 ~~i~i~G~g---GqGv~ta 16 (170)
T PRK08338 1 MQIRFAGIG---GQGVVLA 16 (170)
T ss_pred CeEEEEEEC---cHHHHHH
Confidence 356777754 9999754
Done!