Query psy4210
Match_columns 71
No_of_seqs 122 out of 629
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 19:41:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yic_A 2-oxoglutarate decarbox 99.6 3.6E-16 1.2E-20 128.2 1.7 66 1-66 236-306 (868)
2 2jgd_A 2-oxoglutarate dehydrog 99.6 3.2E-16 1.1E-20 129.4 1.3 66 1-66 312-377 (933)
3 2xt6_A 2-oxoglutarate decarbox 99.5 1.7E-15 5.8E-20 126.7 2.0 66 1-66 481-551 (1113)
4 1w85_A Pyruvate dehydrogenase 98.4 2.1E-08 7E-13 74.9 -0.2 57 3-65 135-191 (368)
5 2bfd_A 2-oxoisovalerate dehydr 98.2 2.2E-07 7.5E-12 70.0 0.5 54 5-64 157-210 (400)
6 1qs0_A 2-oxoisovalerate dehydr 98.2 2.2E-07 7.4E-12 70.5 0.4 55 4-64 175-229 (407)
7 1umd_A E1-alpha, 2-OXO acid de 98.1 7.1E-07 2.4E-11 66.0 1.0 54 4-63 138-191 (367)
8 2ozl_A PDHE1-A type I, pyruvat 98.1 5.1E-07 1.7E-11 67.5 0.1 54 6-65 136-189 (365)
9 3mos_A Transketolase, TK; thia 83.6 0.3 1E-05 38.4 0.8 43 16-63 127-169 (616)
10 3rim_A Transketolase, TK; TPP, 67.4 1.1 3.7E-05 36.2 -0.1 44 17-63 140-193 (700)
11 2o1x_A 1-deoxy-D-xylulose-5-ph 67.2 1.4 4.9E-05 34.3 0.6 43 14-62 127-169 (629)
12 2o1s_A 1-deoxy-D-xylulose-5-ph 66.8 1.5 5.1E-05 34.1 0.6 41 16-62 127-167 (621)
13 3l84_A Transketolase; TKT, str 57.7 2.1 7E-05 34.1 -0.1 43 17-62 121-167 (632)
14 3oz2_A Digeranylgeranylglycero 44.1 11 0.00038 25.1 1.8 16 41-56 279-299 (397)
15 2qtc_A Pyruvate dehydrogenase 38.1 7.4 0.00025 32.3 0.2 44 17-63 199-246 (886)
16 3uk1_A Transketolase; structur 33.3 6.7 0.00023 31.7 -0.7 43 17-62 162-211 (711)
17 2xdo_A TETX2 protein; tetracyc 31.2 19 0.00064 25.1 1.4 16 41-56 316-336 (398)
18 3f7w_A Putative fructosamine-3 27.6 17 0.00058 24.2 0.6 8 39-46 187-194 (288)
19 1gpu_A Transketolase; transfer 23.8 26 0.00087 27.7 1.1 43 17-62 123-172 (680)
20 3on3_A Keto/oxoacid ferredoxin 23.7 34 0.0012 22.4 1.6 18 39-59 6-23 (183)
21 1itz_A Transketolase; calvin c 21.1 31 0.0011 27.2 1.1 43 17-62 134-183 (675)
22 2vou_A 2,6-dihydroxypyridine h 21.0 40 0.0014 23.4 1.5 16 41-56 301-321 (397)
23 4hb9_A Similarities with proba 20.6 35 0.0012 22.9 1.1 16 41-56 313-333 (412)
24 3bwz_A Cellulosomal scaffoldin 20.2 47 0.0016 23.4 1.7 25 2-28 38-62 (181)
25 4gkh_A Aminoglycoside 3'-phosp 20.1 34 0.0011 22.0 0.9 10 39-48 192-201 (272)
No 1
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.57 E-value=3.6e-16 Score=128.16 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=58.9
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccCCCC-----CeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAG-----DRIAHPKLSNSSLMITLGIGLPMFLYTEILH 66 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~-----~~vlpiliHGDAAf~GQGvv~Etl~ls~lph 66 (71)
+++++++|||||+++.|+++|.++|+|++.++.++ .+.+++.+||||||++||+++|+|||+.+..
T Consensus 236 v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~ 306 (868)
T 2yic_A 236 IEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRG 306 (868)
T ss_dssp EEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTT
T ss_pred eeeeecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcC
Confidence 46899999999999999999999999987654333 6789999999999999999999999998754
No 2
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.57 E-value=3.2e-16 Score=129.41 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=59.9
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH 66 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph 66 (71)
+++++++|||||+++.|+++|.++|+|++.++.++.+.++|.+||||||++||+++|+||++.+..
T Consensus 312 ~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~ 377 (933)
T 2jgd_A 312 VHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARG 377 (933)
T ss_dssp EEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTT
T ss_pred eEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccC
Confidence 478899999999999999999999999886555567899999999999999999999999998764
No 3
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.52 E-value=1.7e-15 Score=126.68 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=58.5
Q ss_pred CeEEeecCCCCccccCceeeeeeehhhhhccCCCC-----CeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210 1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAG-----DRIAHPKLSNSSLMITLGIGLPMFLYTEILH 66 (71)
Q Consensus 1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~-----~~vlpiliHGDAAf~GQGvv~Etl~ls~lph 66 (71)
+++++++|||||+++.|+++|.++|+|++.++.++ .+.+++.+||||||++||+++|+|||+.+..
T Consensus 481 v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~ 551 (1113)
T 2xt6_A 481 IEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRG 551 (1113)
T ss_dssp EEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTT
T ss_pred eeeeecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcC
Confidence 36899999999999999999999999997644333 6789999999999999999999999998754
No 4
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=98.45 E-value=2.1e-08 Score=74.89 Aligned_cols=57 Identities=5% Similarity=-0.022 Sum_probs=48.7
Q ss_pred EEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210 3 LTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL 65 (71)
Q Consensus 3 v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp 65 (71)
..+.+|++||....|+++|.++|.+... .....|.++|||||. ||+++|+|++....
T Consensus 135 ~~~~~~~g~lG~~lp~AvG~A~A~~~~~-----~~~~vv~i~GDGa~~-~G~~~Eal~~A~~~ 191 (368)
T 1w85_A 135 VNVLPPQIIIGAQYIQAAGVALGLKMRG-----KKAVAITYTGDGGTS-QGDFYEGINFAGAF 191 (368)
T ss_dssp CCBCCCCCSTTHHHHHHHHHHHHHHHTT-----CSCCEEEEEETGGGG-SHHHHHHHHHHHHT
T ss_pred cccCCCccccCccccHHHHHHHHhHhhC-----CCCeEEEEEchhhhh-hcHHHHHHHHHHHH
Confidence 4578899999999999999999998753 234688999999999 99999999987543
No 5
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=98.20 E-value=2.2e-07 Score=69.99 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=46.7
Q ss_pred eecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 5 LSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 5 l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
+..+++||....|+++|.+.|.+... .....+.++||||| +||+++|+|+++..
T Consensus 157 ~~~~~g~lG~~lp~AvG~AlA~~~~~-----~~~~vv~~~GDGa~-~~G~~~Eal~~A~~ 210 (400)
T 2bfd_A 157 FVTISSPLATQIPQAVGAAYAAKRAN-----ANRVVICYFGEGAA-SEGDAHAGFNFAAT 210 (400)
T ss_dssp BCCCCSSTTTHHHHHHHHHHHHHHHT-----CCCCEEEEEETTGG-GSHHHHHHHHHHHH
T ss_pred ccccCccccccccHHHHHHHhhhhhC-----CCCeEEEEECchhh-hcChHHHHHHHHHH
Confidence 57889999999999999999998763 23467899999999 89999999998754
No 6
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=98.20 E-value=2.2e-07 Score=70.51 Aligned_cols=55 Identities=7% Similarity=-0.014 Sum_probs=47.0
Q ss_pred EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210 4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI 64 (71)
Q Consensus 4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l 64 (71)
.+.+|++||....|+++|.++|.+... .....|.++||||| +||.++|+|+++..
T Consensus 175 ~~~~~~g~lG~~lp~AvGaA~A~k~~~-----~~~~vv~i~GDGa~-~~G~~~Eal~~A~~ 229 (407)
T 1qs0_A 175 GFFTISGNLATQFVQAVGWAMASAIKG-----DTKIASAWIGDGAT-AESDFHTALTFAHV 229 (407)
T ss_dssp TBCCCCSSSSHHHHHHHHHHHHHHHTT-----CCCCEEEEEETGGG-GSHHHHHHHHHHHH
T ss_pred CccccccccccchhHHHHHHHHHHHhC-----CCCEEEEEECCchh-hcChHHHHHHHHHH
Confidence 467899999999999999999998753 23478999999995 79999999998753
No 7
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=98.08 E-value=7.1e-07 Score=65.97 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=45.6
Q ss_pred EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
.+.++++||....|+++|.+.|.+.... ....|.++||||| ++|+++|+|++..
T Consensus 138 ~~~~~~g~lG~~l~~a~G~A~a~k~~~~-----~~~vv~i~GDGa~-~~G~~~Eal~~A~ 191 (367)
T 1umd_A 138 NFFTVASPIASHVPPAAGAAISMKLLRT-----GQVAVCTFGDGAT-SEGDWYAGINFAA 191 (367)
T ss_dssp TBCCCCSSTTTTHHHHHHHHHHHHHTTC-----CCCEEEEEETGGG-GSHHHHHHHHHHH
T ss_pred CcCCCCchhhhhhhHHHHHHHHHHHhCC-----CCeEEEEEccccc-ccCcHHHHHHHHH
Confidence 3567999999999999999999887532 2367899999999 8999999888764
No 8
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=98.07 E-value=5.1e-07 Score=67.52 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=44.8
Q ss_pred ecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210 6 SSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL 65 (71)
Q Consensus 6 ~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp 65 (71)
..+.+++-...|+++|.++|++... .+..+|.+||||| ++||+++|+|+++.+.
T Consensus 136 ~~~~g~~G~~lp~A~G~A~A~~~~~-----~~~~vv~~~GDGa-~~~G~~~Ealn~A~~~ 189 (365)
T 2ozl_A 136 YGGNGIVGAQVPLGAGIALACKYNG-----KDEVCLTLYGDGA-ANQGQIFEAYNMAALW 189 (365)
T ss_dssp CCCCCSTTTHHHHHHHHHHHHHHHT-----CCCCEEEEEETTG-GGCHHHHHHHHHHHHT
T ss_pred CCCcchhhhhhHHHHHHHHHHHhcC-----CCceEEEEECchh-hhccHHHHHHHHHHHH
Confidence 4556889999999999999998762 3357899999999 5699999999988543
No 9
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=83.55 E-value=0.3 Score=38.35 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=29.8
Q ss_pred CceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 16 YPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 16 nPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
-|.++|.+.|...... ...+| +.+-|||+|. +|+.+|.+++..
T Consensus 127 l~~A~G~AlA~~~~~~--~~~~v--v~v~GDG~~~-eG~~~Eal~~A~ 169 (616)
T 3mos_A 127 LGAACGMAYTGKYFDK--ASYRV--YCLLGDGELS-EGSVWEAMAFAS 169 (616)
T ss_dssp HHHHHHHHHHHHHTSC--CSCCE--EEEEETGGGG-SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCC--CCCEE--EEEECccccc-cCcHHHHHHHHH
Confidence 3567788877654322 12344 5678999998 799999998753
No 10
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=67.36 E-value=1.1 Score=36.24 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=29.4
Q ss_pred ceeeeeeehhhhhc---c-------CCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 17 PVNLGKTKAFQFLT---N-------DNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~---~-------d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
|.++|.+.|..... + +....+ .+.+=|||++. +|+++|.+++..
T Consensus 140 ~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~--v~~~~GDG~l~-eG~~~EAl~~A~ 193 (700)
T 3rim_A 140 ASAVGMAMASRYERGLFDPDAEPGASPFDHY--IYVIASDGDIE-EGVTSEASSLAA 193 (700)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCTTCSTTCCC--EEEEEEHHHHH-SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccccccccccCCCCe--EEEEECCcccc-cChHHHHHHHHH
Confidence 45677777776531 1 112233 45566999998 899999998854
No 11
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=67.20 E-value=1.4 Score=34.26 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=29.5
Q ss_pred ccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 14 LVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 14 aVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
.-=|.++|.+.|+..... ..+| +.+=|||+| .+|..+|.|+..
T Consensus 127 ~gl~~AvG~AlA~k~~~~---~~~V--v~v~GDG~~-~~G~~~EaL~~A 169 (629)
T 2o1x_A 127 TSLTNALGMALARDAQGK---DFHV--AAVIGDGSL-TGGMALAALNTI 169 (629)
T ss_dssp CHHHHHHHHHHHHHHHTC---CCCE--EEEEETTGG-GSHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHhCC---CCeE--EEEEchhhh-hccHHHHHHHHH
Confidence 344677788888654321 2344 456799999 479999998864
No 12
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=66.81 E-value=1.5 Score=34.06 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=28.7
Q ss_pred CceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 16 YPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 16 nPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
=|.++|.+.|+..... ..+| +.+=|||+|. +|..+|.|++.
T Consensus 127 l~~A~G~AlA~~~~~~---~~~V--v~v~GDG~~~-~G~~~EaL~~A 167 (621)
T 2o1s_A 127 ISAGIGIAVAAEKEGK---NRRT--VCVIGDGAIT-AGMAFEAMNHA 167 (621)
T ss_dssp HHHHHHHHHHHHHHTS---CCCE--EEEEETTGGG-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---CCeE--EEEEchhhhh-ccHHHHHHHHH
Confidence 4677788887654322 2344 4566999995 79999998864
No 13
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=57.75 E-value=2.1 Score=34.05 Aligned_cols=43 Identities=19% Similarity=0.104 Sum_probs=28.5
Q ss_pred ceeeeeeehhhhhcc----CCCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 17 PVNLGKTKAFQFLTN----DNAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~----d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
|.++|.+.|...... +....+|+ .+=|||+|. +|+.+|.+++.
T Consensus 121 ~~AvG~AlA~~~~~~~~n~~~~d~~v~--~v~GDG~~~-eG~~~Eal~~A 167 (632)
T 3l84_A 121 ANAVGFAMAAKKAQNLLGSDLIDHKIY--CLCGDGDLQ-EGISYEACSLA 167 (632)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCCEE--EEEEHHHHH-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCCeEE--EEECCcchh-hccHHHHHHHH
Confidence 456777777764321 11134454 456999998 69999998874
No 14
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=44.15 E-value=11 Score=25.12 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=12.7
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
+++=|||| ++|||+.+
T Consensus 279 v~lvGDAA~~~~P~~G~Gi~~ 299 (397)
T 3oz2_A 279 LMLVGDAARLIDPITGGGIAN 299 (397)
T ss_dssp EEECGGGGTCSCTTTCCCHHH
T ss_pred EEEcccccccCCCCcchhHHH
Confidence 55669998 78999864
No 15
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=38.11 E-value=7.4 Score=32.31 Aligned_cols=44 Identities=9% Similarity=0.016 Sum_probs=29.8
Q ss_pred ceeeeeeehhhhhc--c--CCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210 17 PVNLGKTKAFQFLT--N--DNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE 63 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~--~--d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~ 63 (71)
+.++|.++|..... + +....+|.+ +=|||++. +|..+|.+++..
T Consensus 199 s~AiG~A~a~~~l~~~~~~~~~~~~v~a--viGDG~l~-eG~~~EAl~~A~ 246 (886)
T 2qtc_A 199 IGAIYQAKFLKYLEHRGLKDTSKQTVYA--FLGDGEMD-EPESKGAITIAT 246 (886)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCTTCCEEE--EEETGGGG-SHHHHTTHHHHH
T ss_pred HHHHHHHHHhhhhcccccccCCCCEEEE--EECCcccc-ccchHHHHHHHH
Confidence 45678888876521 1 223345554 55999998 499999999754
No 16
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=33.33 E-value=6.7 Score=31.65 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=27.9
Q ss_pred ceeeeeeehhhhhcc---C----CCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 17 PVNLGKTKAFQFLTN---D----NAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~~---d----~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
|.++|.+.|...... . ....+|+ .+=|||+|. +|+.+|.+++.
T Consensus 162 ~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv--~i~GDG~l~-eG~~~Eal~~A 211 (711)
T 3uk1_A 162 ANAVGMALGEALLAAEFNRDDAKIVDHHTY--VFLGDGCLM-EGISHEACSLA 211 (711)
T ss_dssp HHHHHHHHHHHHHHHHHCBTTBCCCCCCEE--EEECHHHHH-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccccCCCeEE--EEECCcchh-hccHHHHHHHH
Confidence 456677777654321 0 0124454 456999998 79999998765
No 17
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=31.20 E-value=19 Score=25.10 Aligned_cols=16 Identities=6% Similarity=0.115 Sum_probs=13.3
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
+++=|||| ++|||+..
T Consensus 316 v~LiGDAAh~~~P~~GqG~n~ 336 (398)
T 2xdo_A 316 ITMIGDAAHLMPPFAGQGVNS 336 (398)
T ss_dssp EEECTHHHHCCCCTTSCSHHH
T ss_pred EEEEeehhccCCCccCccHHH
Confidence 66779999 78999875
No 18
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=27.60 E-value=17 Score=24.16 Aligned_cols=8 Identities=0% Similarity=0.239 Sum_probs=6.9
Q ss_pred EeEeeecc
Q psy4210 39 AHPKLSNS 46 (71)
Q Consensus 39 lpiliHGD 46 (71)
-|.+||||
T Consensus 187 ~p~LvHGD 194 (288)
T 3f7w_A 187 PPARIHGD 194 (288)
T ss_dssp CCEEECSC
T ss_pred CCeeeecC
Confidence 47899999
No 19
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=23.80 E-value=26 Score=27.74 Aligned_cols=43 Identities=14% Similarity=0.049 Sum_probs=27.4
Q ss_pred ceeeeeeehhhhhc---cCC----CCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 17 PVNLGKTKAFQFLT---NDN----AGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~---~d~----~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
|.++|.+-|..... +.. ...+| +.+=|||+|. +|+.+|.+++.
T Consensus 123 ~~AvG~AlA~~~~~~~~n~~~~~~~~~~v--v~i~GDG~~~-eG~~~Eal~~A 172 (680)
T 1gpu_A 123 SNAVGMAMAQANLAATYNKPGFTLSDNYT--YVFLGDGCLQ-EGISSEASSLA 172 (680)
T ss_dssp HHHHHHHHHHHHHHHHHCBTTBCCCCCCE--EEEECHHHHH-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCccCCCCCeE--EEEECCCccc-hhhHHHHHHHH
Confidence 44567777765332 110 12334 5667999996 69999998875
No 20
>3on3_A Keto/oxoacid ferredoxin oxidoreductase, gamma SUB; structural genomics, PSI-2, protein structure initiative; 2.19A {Geobacter sulfurreducens}
Probab=23.70 E-value=34 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=13.5
Q ss_pred EeEeeecchhccCcchhHHhh
Q psy4210 39 AHPKLSNSSLMITLGIGLPMF 59 (71)
Q Consensus 39 lpiliHGDAAf~GQGvv~Etl 59 (71)
.-|+++|.| |||++.=.-
T Consensus 6 ~~i~i~G~G---GqGvvta~~ 23 (183)
T 3on3_A 6 YEIRFSGAG---GQGLILAGV 23 (183)
T ss_dssp EEEEEEECT---TSCHHHHHH
T ss_pred EEEEEEEeC---chHHHHHHH
Confidence 468899976 999986443
No 21
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=21.07 E-value=31 Score=27.22 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=28.5
Q ss_pred ceeeeeeehhhhhc---cC----CCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210 17 PVNLGKTKAFQFLT---ND----NAGDRIAHPKLSNSSLMITLGIGLPMFLYT 62 (71)
Q Consensus 17 PVv~Gk~RA~Q~~~---~d----~~~~~vlpiliHGDAAf~GQGvv~Etl~ls 62 (71)
|.++|.+.|+.... +. ....+| +.+=|||+|. +|+.+|.+++.
T Consensus 134 ~~AvG~AlA~~~~~~~~n~~~~~~~~~~v--~~i~GDG~~~-eG~~~Eal~~A 183 (675)
T 1itz_A 134 ANAVGLALAEKHLAARFNKPDSEIVDHYT--YVILGDGCQM-EGIANEACSLA 183 (675)
T ss_dssp HHHHHHHHHHHHHHHHHCBTTBCCCCCCE--EEEECHHHHH-SHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccccccCCCCCEE--EEEECHhHhc-hhHHHHHHHHH
Confidence 56788888865322 10 012344 5567999997 69999998875
No 22
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=21.01 E-value=40 Score=23.37 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=12.6
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
+.+=|||| ++|||+.+
T Consensus 301 v~LiGDAAH~~~P~~GqG~n~ 321 (397)
T 2vou_A 301 VLLIGDAAVTPRPHAAAGGAK 321 (397)
T ss_dssp EEECGGGTSBCCGGGSCHHHH
T ss_pred EEEEeccccccCCcchhhHHH
Confidence 56669998 57999864
No 23
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=20.58 E-value=35 Score=22.92 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=12.3
Q ss_pred Eeeecchh-----ccCcchhH
Q psy4210 41 PKLSNSSL-----MITLGIGL 56 (71)
Q Consensus 41 iliHGDAA-----f~GQGvv~ 56 (71)
|++=|||| |.|||+..
T Consensus 313 v~LiGDAAH~~~P~~GqG~n~ 333 (412)
T 4hb9_A 313 VTLLGDAIHNMTPMTGSGANT 333 (412)
T ss_dssp EEECTHHHHCSSCCSSSHHHH
T ss_pred EEEEEcccccCCCchhhHHHH
Confidence 44569999 68999864
No 24
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=20.20 E-value=47 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.2
Q ss_pred eEEeecCCCCccccCceeeeeeehhhh
Q psy4210 2 TLTLSSNPSHLELVYPVNLGKTKAFQF 28 (71)
Q Consensus 2 ~v~l~~NPSHLEaVnPVv~Gk~RA~Q~ 28 (71)
.+.+-++|.=|++||| -|+.-.+-.
T Consensus 38 QvNIKYDP~VLQaV~~--tG~~y~~~T 62 (181)
T 3bwz_A 38 QLNMKYDPAVLQPVTS--SGVAYTKST 62 (181)
T ss_dssp EEEEECCTTTEEEECT--TSCBCCTTC
T ss_pred EEecccChhHeeeecC--CCccccccc
Confidence 4688999999999999 887765543
No 25
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=20.14 E-value=34 Score=21.99 Aligned_cols=10 Identities=0% Similarity=-0.313 Sum_probs=7.7
Q ss_pred EeEeeecchh
Q psy4210 39 AHPKLSNSSL 48 (71)
Q Consensus 39 lpiliHGDAA 48 (71)
=++++|||-.
T Consensus 192 ~~~l~HGDl~ 201 (272)
T 4gkh_A 192 DSVVTHGDFS 201 (272)
T ss_dssp CEEEECSCCC
T ss_pred CcEEEcCCCC
Confidence 3678999964
Done!