RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4210
         (71 letters)



>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
           of OGDC-like subfamily, TPP-binding module; composed of
           proteins similar to the E1 component of the
           2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
           OGDC catalyzes the oxidative decarboxylation of
           2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
           reaction of the tricarboxylic acid cycle.
          Length = 265

 Score = 52.1 bits (126), Expect = 7e-10
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
           + L+L+ NPSHLE V PV +GKT+A Q    D   D++
Sbjct: 104 VHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKV 141


>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
           Reviewed.
          Length = 924

 Score = 46.3 bits (111), Expect = 9e-08
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDR 37
           + L+L+ NPSHLE+V PV  G  +A Q    D    +
Sbjct: 305 VHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341


>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
           (E1) component, and related enzymes [Energy production
           and conversion].
          Length = 906

 Score = 44.2 bits (105), Expect = 6e-07
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIA 39
           + L+L+ NPSHLE+V PV  G  +A Q    D   D++ 
Sbjct: 289 VHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVL 327


>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component. 
           The 2-oxoglutarate dehydrogenase complex consists of
           this thiamine pyrophosphate-binding subunit (E1),
           dihydrolipoamide succinyltransferase (E2), and lipoamide
           dehydrogenase (E3). The E1 ortholog from Corynebacterium
           glutamicum is unusual in having an N-terminal extension
           that resembles the dihydrolipoamide succinyltransferase
           (E2) component of 2-oxoglutarate dehydrogenase [Energy
           metabolism, TCA cycle].
          Length = 929

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

Query: 3   LTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITL 52
           L L+ NPSHLE+V PV +G T+A          DR+     S   L I +
Sbjct: 308 LALAFNPSHLEIVSPVVIGSTRARL--------DRLNDSPESTKVLAILI 349


>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
          Length = 1228

 Score = 32.6 bits (75), Expect = 0.007
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 4   TLSSNPSHLELVYPVNLGKTKAFQ 27
           +L++NPSHLE V PV  G  +A Q
Sbjct: 613 SLAANPSHLEAVDPVLEGIVRAKQ 636


>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
            This model represents proteins of 1350 in length, in
            multiple species of Burkholderia, in Acidovorax avenae
            subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
            and in multiple copies in Sorangium cellulosum, in
            genomic neighborhoods that include a
            cyclodehydratase/docking scaffold fusion protein
            (TIGR03882) and a member of the thiazole/oxazole modified
            metabolite (TOMM) precursor family TIGR03795. It has a
            kinase domain in the N-terminal 300 amino acids, followed
            by a cyclase homology domain, followed by regions without
            named domain definitions. It is a probable
            bacteriocin-like metabolite biosynthesis protein
            [Cellular processes, Toxin production and resistance].
          Length = 1266

 Score = 27.5 bits (61), Expect = 0.52
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 13   ELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMF-LYTEILH 66
             L +  +LG T  +        GDR     +++++L ++   GLP   +Y  ++ 
Sbjct: 1095 CLDHLPSLGLTMMYLARFLQAQGDRDQARAVADAALELSHRYGLPAVEVYAAVIR 1149


>gnl|CDD|215425 PLN02791, PLN02791, Nudix hydrolase homolog.
          Length = 770

 Score = 24.4 bits (53), Expect = 6.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 5   LSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLG 53
            + +PS L+      L K+KA  FL+ND     IA  +L +S L +T+G
Sbjct: 410 CADSPS-LK-----RLLKSKAEAFLSNDYYESDIAWMEL-DSKLDVTIG 451


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0819    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,341,635
Number of extensions: 235151
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 9
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)