RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4210
         (71 letters)



>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African
           clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 150

 Score = 23.5 bits (50), Expect = 3.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 17  PVNLGKTKAFQFLTNDNAGDRIA 39
             +LGK    + L   NAG R+A
Sbjct: 120 ADDLGKGGNDESLKTGNAGGRLA 142


>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke
           (Schistosoma mansoni) [TaxId: 6183]}
          Length = 156

 Score = 23.1 bits (49), Expect = 3.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 19  NLGKTKAFQFLTNDNAGDRIA 39
           +LG+          NAG R+A
Sbjct: 127 DLGRGGHELSKVTGNAGGRLA 147


>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach
           (Spinacia oleracea) [TaxId: 3562]}
          Length = 154

 Score = 23.1 bits (49), Expect = 4.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 17  PVNLGKTKAFQFLTNDNAGDRIA 39
             +LGK       T  NAG R+A
Sbjct: 123 EDDLGKGGHELSPTTGNAGGRLA 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 225,296
Number of extensions: 7193
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 5
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)