BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4214
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V24|A Chain A, Structure Of The Human Spry Domain-Containing Socs Box
Protein Ssb-4
Length = 208
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 79/114 (69%), Gaps = 4/114 (3%)
Query: 85 HSWNPNDCSRNVYIKPNG-FTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG-PLGTVA 142
H+WNP D S NV++K + T HR+PVAQSTD +RGK+G +G HAW++ W GT A
Sbjct: 29 HAWNPEDRSLNVFVKDDDRLTFHRHPVAQSTDGIRGKVGHARGLHAWQINWPARQRGTHA 88
Query: 143 VVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQG--SYPQLNNP 194
VVG+AT A L S GY AL+GSD+ESWGW++ +R+ H+G++Q +YP P
Sbjct: 89 VVGVATARAPLHSVGYTALVGSDAESWGWDLGRSRLYHDGKNQPGVAYPAFLGP 142
>pdb|3F2O|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
pdb|3F2O|B Chain B, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
Length = 233
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 78/115 (67%), Gaps = 4/115 (3%)
Query: 84 FHSWNPNDCSRNVYIKPNG-FTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFW-QGPLGTV 141
HSWN ND S NV++K + HR+PVAQSTDA+RGK+G+ +G H W++ W GT
Sbjct: 53 LHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTH 112
Query: 142 AVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGS--YPQLNNP 194
AVVG+AT DA L S GY L+G++ ESWGW++ NR+ H+G++Q S YP P
Sbjct: 113 AVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEP 167
>pdb|2JK9|A Chain A, The Structure Of Spla-Ryanodine Receptor Domain And Socs
Box Containing 1 In Complex With A Par-4 Peptide
Length = 212
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 78/115 (67%), Gaps = 4/115 (3%)
Query: 84 FHSWNPNDCSRNVYIKPNG-FTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFW-QGPLGTV 141
HSWN ND S NV++K + HR+PVAQSTDA+RGK+G+ +G H W++ W GT
Sbjct: 32 LHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTH 91
Query: 142 AVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGS--YPQLNNP 194
AVVG+AT DA L S GY L+G++ ESWGW++ NR+ H+G++Q S YP P
Sbjct: 92 AVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEP 146
>pdb|2AFJ|A Chain A, Spry Domain-Containing Socs Box Protein 2 (Ssb-2)
Length = 226
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 77/119 (64%), Gaps = 8/119 (6%)
Query: 85 HSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQGPL---GTV 141
H WNP DCS N+ +K G R PVAQSTD VRGK G+ +G HAWE+ W PL GT
Sbjct: 41 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISW--PLEQRGTH 98
Query: 142 AVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQG-SYPQLNNPPKWEK 199
AVVG+AT A LQ+ Y AL+GS+SESWGW+I ++ H +S+G PQ P+ E+
Sbjct: 99 AVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYH--QSKGLEAPQYPAGPQGEQ 155
>pdb|3EK9|A Chain A, Spry Domain-Containing Socs Box Protein 2: Crystal
Structure And Residues Critical For Protein Binding
Length = 213
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 77/119 (64%), Gaps = 8/119 (6%)
Query: 85 HSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQGPL---GTV 141
H WNP DCS N+ +K G R PVAQSTD VRGK G+ +G HAWE+ W PL GT
Sbjct: 35 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISW--PLEQRGTH 92
Query: 142 AVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQG-SYPQLNNPPKWEK 199
AVVG+AT A LQ+ Y AL+GS+SESWGW+I ++ H +S+G PQ P+ E+
Sbjct: 93 AVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYH--QSKGLEAPQYPAGPQGEQ 149
>pdb|3EMW|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 2 (Spsb2) In Complex With A
20-Residue Vasa Peptide
Length = 217
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
Query: 85 HSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQGPL---GTV 141
H WNP DCS N+ +K G R PVAQSTD RGK G+ +G HAWE+ W PL GT
Sbjct: 44 HGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISW--PLEQRGTH 101
Query: 142 AVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGS--YP 189
AVVG+AT A LQ+ Y AL+GS+SESWGW+I ++ H + G+ YP
Sbjct: 102 AVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYP 151
>pdb|2FNJ|A Chain A, Crystal Structure Of A B30.2SPRY DOMAIN-Containing Protein
Gustavus In Complex With Elongin B And Elongin C
Length = 226
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%), Gaps = 4/111 (3%)
Query: 85 HSWNPNDCSRNVYIKPNG-FTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFW-QGPLGTVA 142
HSWN D S N+++K + T HR+PVAQSTD +RGK+G +G H WE++W GT A
Sbjct: 31 HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHA 90
Query: 143 VVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQG--SYPQL 191
VVG+ T DA L S GY +L+GS +SWGW++ N++ H+ ++ +YP +
Sbjct: 91 VVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAI 141
>pdb|2IHS|A Chain A, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN
Complex With A 20-Residue Vasa Peptide
pdb|2IHS|B Chain B, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN
Complex With A 20-Residue Vasa Peptide
Length = 214
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%), Gaps = 4/111 (3%)
Query: 85 HSWNPNDCSRNVYIKPNG-FTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFW-QGPLGTVA 142
HSWN D S N+++K + T HR+PVAQSTD +RGK+G +G H WE++W GT A
Sbjct: 33 HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHA 92
Query: 143 VVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQG--SYPQL 191
VVG+ T DA L S GY +L+GS +SWGW++ N++ H+ ++ +YP +
Sbjct: 93 VVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAI 143
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin
Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin
Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein- Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein- Substrate Interactions In Auxin Perception And
Signaling
Length = 594
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 6 EYEIISHLPEHILELLFSYLDLTDIRNCM-LVCKKWYTLLCNEKNEVWRVHCLRFMSENV 64
+ I PE +LE +FS++ L RN + LVCK WY + + +V+ +C V
Sbjct: 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATV 61
Query: 65 IKSDLLSSLSTYKAKLRAYFHSWN 88
I+ + + + K + +F +N
Sbjct: 62 IRR--FPKVRSVELKGKPHFADFN 83
>pdb|1Q9J|A Chain A, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
pdb|1Q9J|B Chain B, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
Length = 422
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 150 DALLQSHGYLALIGSDSESWGWNIVDNRILHNG 182
DALL++H LA S GWN+V + +LH+G
Sbjct: 44 DALLETHPVLASHLEQSSDGGWNLVADDLLHSG 76
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 6 EYEIISHLP----EHILELLFSYLDLTDIRNCMLVCKKWYTL 43
+ + I+ LP +HI E + SYLD + LVCK+WY +
Sbjct: 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48
>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
Length = 637
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 214 LRRTMSSLGWHSEDCQTKYSTPPYLLYTETQKYQWCTLDPHWMAELFSLG 263
LRR S +G +D TK T PY L+T +Y+ + + L LG
Sbjct: 430 LRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLG 479
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 5 YEYEIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHC 56
++ + IS LP+ + + S+L+ D+ C+ W L E N +WR C
Sbjct: 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA--EDNLLWREKC 63
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 1 MSNGYEYEIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFM 60
+ + + ++I+ LP I +F+YL DI N + V + W ++ + +W+ +
Sbjct: 6 IKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII-RKSTSLWKK---LLI 61
Query: 61 SENVIKSDLLSSLS 74
SEN + +SL+
Sbjct: 62 SENFVSPKGFNSLN 75
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 1 MSNGYEYEIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFM 60
+ + + ++I+ LP I +F+YL DI N + V + W ++ + +W+ +
Sbjct: 6 IKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII-RKSTSLWKK---LLI 61
Query: 61 SENVIKSDLLSSLS 74
SEN + +SL+
Sbjct: 62 SENFVSPKGFNSLN 75
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 97 YIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFW---QG-PL-GTVAVVGIATKDA 151
Y KP+ TL N + + V YQG EVFW QG PL G V +A +
Sbjct: 109 YSKPS-MTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERG 167
Query: 152 LLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGSYPQLNNPPKWEKESG 202
L H L ++ + ++ +V N +L ++ GS P + E+G
Sbjct: 168 LFDVHSVLRVVLGANGTYSC-LVRNPVLQQ-DAHGSVTITGQPLTFPPETG 216
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 13 LPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNE 47
LP+ +L +FS L L ++ VCK+WY L +E
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A
P27 Peptide
Length = 336
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 13 LPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNE 47
LP+ +L +FS L L ++ VCK+WY L +E
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,118,781
Number of Sequences: 62578
Number of extensions: 381550
Number of successful extensions: 729
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 28
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)