Query psy4214
Match_columns 271
No_of_seqs 230 out of 595
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 19:45:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3953|consensus 100.0 6.9E-34 1.5E-38 252.9 11.5 150 72-229 15-166 (242)
2 KOG4367|consensus 99.6 1.5E-15 3.3E-20 145.8 10.5 125 86-229 536-663 (699)
3 smart00449 SPRY Domain in SPla 99.6 5.5E-15 1.2E-19 118.1 10.9 88 125-230 1-89 (122)
4 PF00622 SPRY: SPRY domain; I 99.5 1.5E-13 3.3E-18 109.3 11.1 90 125-231 1-91 (124)
5 PF12937 F-box-like: F-box-lik 99.5 1.9E-14 4.1E-19 98.5 4.1 47 10-58 1-47 (47)
6 PF00646 F-box: F-box domain; 99.0 1.6E-10 3.5E-15 78.7 1.3 46 9-56 2-47 (48)
7 smart00256 FBOX A Receptor for 99.0 8.1E-10 1.8E-14 72.1 4.1 40 13-54 1-40 (41)
8 KOG2120|consensus 98.5 7.7E-08 1.7E-12 90.5 3.8 49 8-58 96-144 (419)
9 KOG4030|consensus 98.3 4.3E-06 9.2E-11 71.6 9.9 98 113-229 51-148 (197)
10 KOG0281|consensus 98.2 5.9E-07 1.3E-11 85.5 2.1 52 7-60 72-127 (499)
11 KOG2997|consensus 98.0 2.2E-06 4.7E-11 80.8 2.5 56 8-65 105-165 (366)
12 KOG4341|consensus 97.6 3.5E-05 7.6E-10 75.2 3.0 50 11-62 73-122 (483)
13 KOG2626|consensus 97.3 0.00076 1.7E-08 67.3 7.5 134 90-252 298-436 (544)
14 KOG0274|consensus 96.7 0.00074 1.6E-08 68.3 1.5 52 6-59 104-155 (537)
15 PF13765 PRY: SPRY-associated 96.5 0.0021 4.6E-08 44.4 2.6 38 86-123 2-49 (49)
16 PLN03215 ascorbic acid mannose 95.8 0.0076 1.7E-07 58.5 3.5 39 8-46 2-41 (373)
17 KOG0349|consensus 94.9 0.083 1.8E-06 52.6 7.2 121 85-229 89-210 (725)
18 smart00589 PRY associated with 94.1 0.045 9.7E-07 37.2 2.5 38 86-123 5-52 (52)
19 PF13013 F-box-like_2: F-box-l 92.5 0.13 2.9E-06 41.7 3.3 30 9-38 21-50 (109)
20 KOG3926|consensus 91.6 0.18 4E-06 47.2 3.6 79 7-89 199-279 (332)
21 PF06881 Elongin_A: RNA polyme 84.4 0.66 1.4E-05 37.1 2.0 51 8-62 2-52 (109)
22 PF09372 PRANC: PRANC domain; 78.3 1.5 3.3E-05 34.0 2.0 25 8-32 70-94 (97)
23 KOG4408|consensus 77.9 0.59 1.3E-05 45.0 -0.5 49 10-60 8-56 (386)
24 KOG2243|consensus 74.4 9.2 0.0002 43.4 7.0 83 123-226 1103-1185(5019)
25 PF07177 Neuralized: Neuralize 45.2 50 0.0011 24.3 4.6 59 90-150 7-68 (69)
26 PF15409 PH_8: Pleckstrin homo 23.2 75 0.0016 24.8 2.5 21 201-228 15-35 (89)
27 PF11393 IcmL: Macrophage kill 22.0 68 0.0015 25.5 2.1 35 98-135 71-105 (108)
No 1
>KOG3953|consensus
Probab=100.00 E-value=6.9e-34 Score=252.87 Aligned_cols=150 Identities=43% Similarity=0.777 Sum_probs=136.9
Q ss_pred ccchHHHHHHHHhhhcCCCCCCceeEEeCC-CeEEeeCCCCccchhhhccccccCceeEEEEEEeC-CCCceEEEEEecc
Q psy4214 72 SLSTYKAKLRAYFHSWNPNDCSRNVYIKPN-GFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG-PLGTVAVVGIATK 149 (271)
Q Consensus 72 ~~P~~~~k~r~~~~~Wd~~~as~nI~LS~~-~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~-~~Gt~~~vGVa~~ 149 (271)
.+|+.....++. |.|++.+.+.|+.++++ ++|||+||+.|+|+.+||+.+|+.|+|+|||.|.. +.||+++|||||+
T Consensus 15 ~~~~~~~~~~~~-~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk 93 (242)
T KOG3953|consen 15 FMPPSALGVQAQ-HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATK 93 (242)
T ss_pred hcCCcchhhHHh-hccCcccccceeEEecCCcceEEecCCccccccccceeeeccCceEEEEEecCCccCCcceEEEEcc
Confidence 444434555544 99999999999999964 79999999999999999999999999999999996 8999999999999
Q ss_pred ccccccCCCcceecCCCceeeEEecCCeeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCc
Q psy4214 150 DALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQ 229 (271)
Q Consensus 150 ~~~l~~~g~~sllG~n~~SWgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~ 229 (271)
.++++++||..|||+|++||||++.+|.++|||.....||.+++.|+|.+++||+|+|| .+.|+|+|+.+.+.
T Consensus 94 ~Aplha~gy~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLD-------m~egtl~F~~~~e~ 166 (242)
T KOG3953|consen 94 VAPLHAVGYTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILD-------MIEGTLSFAADGEY 166 (242)
T ss_pred cCchhhhHHHHHhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEe-------eccceEEEEECCeE
Confidence 99999999999999999999999998999999977778999888899999999999999 99999999997655
No 2
>KOG4367|consensus
Probab=99.62 E-value=1.5e-15 Score=145.80 Aligned_cols=125 Identities=18% Similarity=0.314 Sum_probs=102.6
Q ss_pred hcCCCCCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeCCCC-ceEEEEEeccccccccCCCcceecC
Q psy4214 86 SWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQGPLG-TVAVVGIATKDALLQSHGYLALIGS 164 (271)
Q Consensus 86 ~Wd~~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~~~G-t~~~vGVa~~~~~l~~~g~~sllG~ 164 (271)
.+++..+.+.+.||++..|+..... ....|+|+++|++|.|||||.++++.| .+.++|||...+..+ -+||+
T Consensus 536 qlt~spsqrdmilsnecatlsgssl--eyrtilgsiafskgvhywevtidrhdgnsdivigvaqpavnrn-----vmlgk 608 (699)
T KOG4367|consen 536 QLTPSPSQRDMILSNECATLSGSSL--EYRTILGSIAFSKGVHYWEVTIDRHDGNSDIVIGVAQPAVNRN-----VMLGK 608 (699)
T ss_pred eccCCchhhceeeecccceeccccc--chheeeeecccccceeEEEEEEeccCCCCCceEEecchhhhhc-----eeecc
Confidence 3677778888999999999876543 346899999999999999999998654 478999999864433 58999
Q ss_pred CCceeeEEecCC--eeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCc
Q psy4214 165 DSESWGWNIVDN--RILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQ 229 (271)
Q Consensus 165 n~~SWgl~~~~~--~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~ 229 (271)
|.+.|.++.+.+ +.+||..++... ..+...|..|||.|| +++|++.|..+|+|
T Consensus 609 dlhgwsmyvdgerswylhnethhnrv-----lggvtrgtvigvrld-------cdrgtmeytvndrq 663 (699)
T KOG4367|consen 609 DLHGWSMYVDGERSWYLHNETHHNRV-----LGGVTRGTVIGVRLD-------CDRGTMEYTVNDRQ 663 (699)
T ss_pred cccceeEEEcCcceeEEecccccccc-----ccccccccEEEEEEe-------ccCCceEEEecccc
Confidence 999999988643 688999877621 345678999999999 99999999999887
No 3
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.61 E-value=5.5e-15 Score=118.15 Aligned_cols=88 Identities=25% Similarity=0.354 Sum_probs=70.5
Q ss_pred CceeEEEEEEeCCCCceEEEEEeccccccccCCCcceecCCCceeeEEecCCeeEeCCcccCCCCCCCCCCCCCC-CCeE
Q psy4214 125 QGRHAWEVFWQGPLGTVAVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGSYPQLNNPPKWEK-ESGL 203 (271)
Q Consensus 125 ~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l~~~g~~sllG~n~~SWgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~-~~rI 203 (271)
+|+|||||++... ..+.|||+++..++ +....+|.|+.||++....+..+|++.... ++ ..+.. +++|
T Consensus 1 sG~~YwEV~v~~~--~~~~vGv~~~~~~r---~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~-~~-----~~~~~~gd~i 69 (122)
T smart00449 1 SGRHYFEVEIFDG--GHWRVGVATKSVPR---GYFALLGEDKGSWGYDGDGGKKYHNSTGPE-YG-----LPLQEPGDVI 69 (122)
T ss_pred CCcEEEEEEEcCC--CeEEEEEEcCccCC---CccccCCCCCCEEEEEcCCCcEEeCCCCCc-cC-----ccccCCCCEE
Confidence 5899999999863 35889999998655 345789999999999986668899986533 32 23343 8999
Q ss_pred EEEEecccccccccceeEEEEecCCcc
Q psy4214 204 SWTVMTALYPLRRTMSSLGWHSEDCQT 230 (271)
Q Consensus 204 GV~LD~~~~~~~~~~G~Lsfy~~~~~~ 230 (271)
||.|| +++|+|+||.++..+
T Consensus 70 Gv~lD-------~~~g~l~F~~ng~~~ 89 (122)
T smart00449 70 GCFLD-------LEAGTISFYKNGKYL 89 (122)
T ss_pred EEEEE-------CCCCEEEEEECCCEe
Confidence 99999 999999999987764
No 4
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.51 E-value=1.5e-13 Score=109.35 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=70.0
Q ss_pred CceeEEEEEEeCCCCceEEEEEeccccccccCCCcceecCCCceeeEEecCCeeEeCCcccCCCCCCCCCCCCCC-CCeE
Q psy4214 125 QGRHAWEVFWQGPLGTVAVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGSYPQLNNPPKWEK-ESGL 203 (271)
Q Consensus 125 ~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l~~~g~~sllG~n~~SWgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~-~~rI 203 (271)
+|+|||||++..... +.|||+++.. +..+....+|.+..||++....+..+|++.... + ...+.. +++|
T Consensus 1 sG~~YwEV~v~~~~~--~~iGv~~~~~--~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~dvI 70 (124)
T PF00622_consen 1 SGKHYWEVEVDSGGS--ISIGVATSSA--SVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEE-T-----GSPFQEPGDVI 70 (124)
T ss_dssp SSEEEEEEEETGGCT--EEEEEEETTS--EESSSTS-TTSSTTEEEEETTTTTEEESTSSSE-C-----SCTSSTTTSEE
T ss_pred CcCEEEEEEEecCcC--EEEEEeECcc--ccCCccccCCccccceeeeccccccceeecccc-c-----ccccccCCcEE
Confidence 589999999986433 8899999975 334556789999999999986547889887644 3 233455 8999
Q ss_pred EEEEecccccccccceeEEEEecCCccc
Q psy4214 204 SWTVMTALYPLRRTMSSLGWHSEDCQTK 231 (271)
Q Consensus 204 GV~LD~~~~~~~~~~G~Lsfy~~~~~~~ 231 (271)
||.|| ++.|+|+||.++..+.
T Consensus 71 G~~lD-------~~~g~l~F~~ng~~~~ 91 (124)
T PF00622_consen 71 GCGLD-------LDNGELSFYKNGKFLG 91 (124)
T ss_dssp EEEEE-------TTTTEEEEEETTEEEE
T ss_pred EEEEe-------ecccEEEEEECCccce
Confidence 99999 9999999999776644
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.50 E-value=1.9e-14 Score=98.54 Aligned_cols=47 Identities=45% Similarity=0.910 Sum_probs=40.4
Q ss_pred cCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeec
Q psy4214 10 ISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLR 58 (271)
Q Consensus 10 ~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~ 58 (271)
+..||+||+.+||+||++.||++|++|||+|++++.++ .+|+++|.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~--~lW~~~~~r 47 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN--SLWRRLCLR 47 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC--CHHHHHC--
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh--hhhhhhccC
Confidence 46899999999999999999999999999999999865 899998864
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.97 E-value=1.6e-10 Score=78.69 Aligned_cols=46 Identities=35% Similarity=0.673 Sum_probs=38.3
Q ss_pred ccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhhee
Q psy4214 9 IISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHC 56 (271)
Q Consensus 9 ~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~ 56 (271)
++..||+|++.+||+||++.|+++|++|||+|++++.+. .+|++.+
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~--~~~~~~~ 47 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP--RLWKKII 47 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH--HHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC--CccHHHh
Confidence 457899999999999999999999999999999999865 6888654
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.95 E-value=8.1e-10 Score=72.09 Aligned_cols=40 Identities=30% Similarity=0.580 Sum_probs=37.2
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhh
Q psy4214 13 LPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRV 54 (271)
Q Consensus 13 LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~ 54 (271)
||+|++..||++|++.|+++|++|||+|+.++.+. .+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~--~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH--DFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh--hhhhc
Confidence 79999999999999999999999999999999765 78874
No 8
>KOG2120|consensus
Probab=98.51 E-value=7.7e-08 Score=90.53 Aligned_cols=49 Identities=31% Similarity=0.518 Sum_probs=44.8
Q ss_pred cccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeec
Q psy4214 8 EIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLR 58 (271)
Q Consensus 8 ~~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~ 58 (271)
..|+.||+||++.||+.|+.++|++.+.|||+||++..|+ .+|+.+...
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de--~lW~~lDl~ 144 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE--SLWQTLDLT 144 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc--cceeeeccC
Confidence 4588999999999999999999999999999999999988 799976554
No 9
>KOG4030|consensus
Probab=98.33 E-value=4.3e-06 Score=71.64 Aligned_cols=98 Identities=27% Similarity=0.298 Sum_probs=76.5
Q ss_pred cchhhhccccccCceeEEEEEEeCCCCceEEEEEeccccccccCCCcceecCCCceeeEEecCCeeEeCCcccCCCCCCC
Q psy4214 113 STDAVRGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGSYPQLN 192 (271)
Q Consensus 113 st~qVrg~~gfs~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l~~~g~~sllG~n~~SWgl~~~~~~~~Hng~~~~~~p~~~ 192 (271)
+|.+++.+.++-...-|+||++-. .|+ |-||+|++..++++.. .|.+.+||++.- ++...||++.....|...
T Consensus 51 GtGG~lAtaPlvQnKsYFevkiQ~-tG~-WgiGlat~q~~l~~~p----~g~d~~sw~~r~-dga~~hnnee~~r~pa~~ 123 (197)
T KOG4030|consen 51 GTGGALATAPLVQNKSYFEVKIQQ-TGT-WGIGLATKQSPLDKVP----GGCDEKSWGIRD-DGAIAHNNEEVARMPATV 123 (197)
T ss_pred ccCceeeeeeeecccceEEEEEee-cce-eeeeeeeccCccccCC----CCCcceeEEEcc-CCchhcccHHHhcCcccc
Confidence 678899999998889999999964 344 5699999999998663 799999999964 678899998765455321
Q ss_pred CCCCCCCCCeEEEEEecccccccccceeEEEEecCCc
Q psy4214 193 NPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQ 229 (271)
Q Consensus 193 ~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~ 229 (271)
.+ ..|+.+||..| .-.|-||.+...
T Consensus 124 ~p---~EGDvVGvayD---------HVELnfY~NGKn 148 (197)
T KOG4030|consen 124 FP---EEGDVVGVAYD---------HVELNFYVNGKN 148 (197)
T ss_pred CC---ccCcEEEEEee---------eEEEEEEEcCce
Confidence 11 36799999966 677999988554
No 10
>KOG0281|consensus
Probab=98.20 E-value=5.9e-07 Score=85.51 Aligned_cols=52 Identities=37% Similarity=0.777 Sum_probs=47.3
Q ss_pred ccccCCCc----HHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeeccc
Q psy4214 7 YEIISHLP----EHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFM 60 (271)
Q Consensus 7 ~~~~~~LP----~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l 60 (271)
.+.+..|| ++|.+.||+|||..+|+.|-+|||+|++++.|+ .+|++++.+..
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg--~~WKkLie~~v 127 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG--MLWKKLIERMV 127 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc--hHHHHHHHHhc
Confidence 36778899 999999999999999999999999999999876 79999887764
No 11
>KOG2997|consensus
Probab=98.05 E-value=2.2e-06 Score=80.78 Aligned_cols=56 Identities=34% Similarity=0.701 Sum_probs=48.5
Q ss_pred cccCCCcHHHHHHHhc-----CCCHHHHHHHHhhhHHHHHhhhccccchhhheeeccchhhhh
Q psy4214 8 EIISHLPEHILELLFS-----YLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFMSENVI 65 (271)
Q Consensus 8 ~~~~~LP~eiL~~IFs-----~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l~~~~l 65 (271)
+.+..||+|||..||. .||+.+|.+||+|||.|+..+.++ .+||..|.+.|.....
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~--~lwR~aC~KvW~~s~~ 165 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP--ELWRLACLKVWQRSCI 165 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh--HHHHHHHHHHHHHhhh
Confidence 3456799999999996 567899999999999999999876 8999999998876444
No 12
>KOG4341|consensus
Probab=97.61 E-value=3.5e-05 Score=75.23 Aligned_cols=50 Identities=24% Similarity=0.441 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeeccchh
Q psy4214 11 SHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFMSE 62 (271)
Q Consensus 11 ~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l~~ 62 (271)
-.||.|++++|||+||.+.|++|++||+.|+..+.|. .-|+++....-+.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~--~~~q~idL~t~~r 122 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG--SCWQHIDLFTFQR 122 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc--ccceeeehhcchh
Confidence 4599999999999999999999999999999999987 5799877665443
No 13
>KOG2626|consensus
Probab=97.27 E-value=0.00076 Score=67.27 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=96.2
Q ss_pred CCCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeC-CCCceEEEEEeccccccccCCCcceecCCCce
Q psy4214 90 NDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG-PLGTVAVVGIATKDALLQSHGYLALIGSDSES 168 (271)
Q Consensus 90 ~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~-~~Gt~~~vGVa~~~~~l~~~g~~sllG~n~~S 168 (271)
.+...++.|+++++|++..- +..-||.+.|...|.-|.||.+.. +.++++-+|.+...++|+ .-+|.|..|
T Consensus 298 hdrA~ql~Is~drlt~tgeK---Gy~MvRAshgv~~G~WYFEI~vd~~pd~~a~RlGwsq~~g~Lq-----ApvGYdkfs 369 (544)
T KOG2626|consen 298 HDRAEQLKISEDRLTATGEK---GYRMVRASHGVLEGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQ-----APVGYDKFS 369 (544)
T ss_pred hcccccccccccceeeeccc---ceeeeeecccccccceeEEEEeecCCCccceeeeccccccccc-----ccccccccc
Confidence 34556788889988886542 667999999999999999999976 567788899999998887 459999999
Q ss_pred eeEEecCCeeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCcccccCCcee----eeeeee
Q psy4214 169 WGWNIVDNRILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQTKYSTPPYL----LYTETQ 244 (271)
Q Consensus 169 Wgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~~~~~~~~~~----l~~~~~ 244 (271)
++|.--+++-.|-..... | ...|..|..||.++. .-.+.+. --+-|.+| |=.|-|
T Consensus 370 Y~wRdk~GtKfh~s~gk~-Y-----~~gf~qGDvLGf~I~-------LP~~~~~--------~~~lp~~~kdk~lI~yK~ 428 (544)
T KOG2626|consen 370 YGWRDKKGTKFHESLGKH-Y-----SDGFGQGDVLGFYIN-------LPKDLSP--------EKYLPLTHKDKFLIKYKG 428 (544)
T ss_pred ccccccCCcchhhhhhhh-h-----hhhccCCceEEEEEe-------cCCcccc--------cccCCccccccceeeeee
Confidence 999754556667664443 5 345667777777766 4444443 12235555 667777
Q ss_pred eeeEeecC
Q psy4214 245 KYQWCTLD 252 (271)
Q Consensus 245 ~~~~~~~~ 252 (271)
-+-||.=|
T Consensus 429 ~lyfe~~d 436 (544)
T KOG2626|consen 429 HLYFEDPD 436 (544)
T ss_pred eeEEEccc
Confidence 77776533
No 14
>KOG0274|consensus
Probab=96.65 E-value=0.00074 Score=68.27 Aligned_cols=52 Identities=29% Similarity=0.638 Sum_probs=44.9
Q ss_pred cccccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeecc
Q psy4214 6 EYEIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRF 59 (271)
Q Consensus 6 ~~~~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~ 59 (271)
..+.+..||.|+...||.|||.++|++|++||+.|+.++++. ..|.+.|...
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~--~~~~~~~~~~ 155 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD--KVWWRMCREL 155 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc--chhhhhhhhh
Confidence 347778899999999999999999999999999999999764 6777666554
No 15
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=96.50 E-value=0.0021 Score=44.43 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=25.9
Q ss_pred hcCCCCCCceeEEeCCCeEEee---------CCCCcc-chhhhccccc
Q psy4214 86 SWNPNDCSRNVYIKPNGFTLHR---------NPVAQS-TDAVRGKMGF 123 (271)
Q Consensus 86 ~Wd~~~as~nI~LS~~~~T~~~---------~P~~~s-t~qVrg~~gf 123 (271)
+.|++||++++.||+|+.++.. +|.++. ..+|+|++||
T Consensus 2 tlDp~TAh~~L~lS~d~k~v~~~~~~~~~p~~peRF~~~~~VLg~~~F 49 (49)
T PF13765_consen 2 TLDPNTAHPSLVLSEDGKSVRYSEQPQNYPDNPERFDHWPQVLGSEGF 49 (49)
T ss_dssp EB-TTTS-TTEEEETTSSEEEE-SST-S--S-TTS-SSSSEEEBS--B
T ss_pred EECcccCCCCeEECCCCeEEEEccCCccCCCCCCccCCcCeEEECCCC
Confidence 5799999999999999887742 455554 4799999987
No 16
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.82 E-value=0.0076 Score=58.47 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=35.3
Q ss_pred cccCCCcHHHHHHHhcCC-CHHHHHHHHhhhHHHHHhhhc
Q psy4214 8 EIISHLPEHILELLFSYL-DLTDIRNCMLVCKKWYTLLCN 46 (271)
Q Consensus 8 ~~~~~LP~eiL~~IFs~L-~~~dL~rcs~VCk~W~~~~~~ 46 (271)
..|+.||+|+|..|...| +..|+.|.+.||++|+..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 358899999999999999 578999999999999998863
No 17
>KOG0349|consensus
Probab=94.89 E-value=0.083 Score=52.60 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred hhcCCCCCCceeEEeCCCeEEeeCCCCccchhhhccccc-cCceeEEEEEEeCCCCceEEEEEeccccccccCCCcceec
Q psy4214 85 HSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGF-YQGRHAWEVFWQGPLGTVAVVGIATKDALLQSHGYLALIG 163 (271)
Q Consensus 85 ~~Wd~~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gf-s~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l~~~g~~sllG 163 (271)
|..++.|....+.|.+++......-. ...-+.|++.|+ -.|.||.||..-..+ - .-||=++-.++|+ ||
T Consensus 89 w~mn~~Drg~alaI~~dGL~CqSre~-KeWhGcRaT~Gl~gkGK~YyEvtitd~G-L-CRVGWsT~qasLd-------lG 158 (725)
T KOG0349|consen 89 WKMNKQDRGLALAIDEDGLACQSREK-KEWHGCRATAGLYGKGKYYYEVTITDKG-L-CRVGWSTLQASLD-------LG 158 (725)
T ss_pred cccCccccCceeeEcCCccccchhHH-hhhhccccccccccCceEEEEEEeccCc-e-eeechhhcccccc-------cC
Confidence 45555565555666555443310000 012366777777 379999999986542 1 4477777766665 67
Q ss_pred CCCceeeEEecCCeeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCc
Q psy4214 164 SDSESWGWNIVDNRILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQ 229 (271)
Q Consensus 164 ~n~~SWgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~ 229 (271)
.+..+.|+-= .+.--||. +-+.| +..|...+.||.||| .+.+++.|-.++.+
T Consensus 159 t~~~gFGfGG-TGkKS~nk-qFDdY-----Ge~Ft~~DvIGCyLD-------ld~~~v~fsKNG~~ 210 (725)
T KOG0349|consen 159 TGLDGFGFGG-TGKKSTNK-QFDDY-----GEPFTLNDVIGCYLD-------LDSRTVWFSKNGEQ 210 (725)
T ss_pred ccccccccCc-cCcccccc-ccccc-----cCcccccceeeEEEe-------ccCceEEEecCccc
Confidence 7777776642 23333443 33336 445778899999999 99999999988766
No 18
>smart00589 PRY associated with SPRY domains.
Probab=94.07 E-value=0.045 Score=37.18 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=27.6
Q ss_pred hcCCCCCCceeEEeCCCeEEee---------CCCCcc-chhhhccccc
Q psy4214 86 SWNPNDCSRNVYIKPNGFTLHR---------NPVAQS-TDAVRGKMGF 123 (271)
Q Consensus 86 ~Wd~~~as~nI~LS~~~~T~~~---------~P~~~s-t~qVrg~~gf 123 (271)
++|+++|++++.|++|+.++.. +|.++. ..+|+|.++|
T Consensus 5 tld~~tA~~~l~lS~d~~~v~~~~~~~~~~~~~~rF~~~~~VL~~~~f 52 (52)
T smart00589 5 TLDPDTAHPYLLLSEDRRSVRYGDLKQSLPDNPERFDSYPCVLGSQGF 52 (52)
T ss_pred EECcccCCCCeEECCCCCEEEECCCCCCCCCCcccccCCCeEecCCcC
Confidence 6899999999999998766642 233333 2579998876
No 19
>PF13013 F-box-like_2: F-box-like domain
Probab=92.46 E-value=0.13 Score=41.68 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=27.8
Q ss_pred ccCCCcHHHHHHHhcCCCHHHHHHHHhhhH
Q psy4214 9 IISHLPEHILELLFSYLDLTDIRNCMLVCK 38 (271)
Q Consensus 9 ~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk 38 (271)
.+.+||.||+..||.|++..++...+..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 366799999999999999999999999998
No 20
>KOG3926|consensus
Probab=91.65 E-value=0.18 Score=47.23 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=57.9
Q ss_pred ccccCCCcHHHHHHHhcCC-CHHHHHHHHhhhHHHHHhhhccccchhhheeeccchhhhhhhc-cccccchHHHHHHHHh
Q psy4214 7 YEIISHLPEHILELLFSYL-DLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFMSENVIKSD-LLSSLSTYKAKLRAYF 84 (271)
Q Consensus 7 ~~~~~~LP~eiL~~IFs~L-~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l~~~~l~~d-ils~~P~~~~k~r~~~ 84 (271)
...+..||.|++..|...| |-.||...++|-..-+.++++ ..+|+++|.-..++.++.+. +++..- ...++++.
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e--~~iWkkLcqfHF~erQi~~~l~l~k~~--q~dWkqmy 274 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE--RRIWKKLCQFHFNERQIHTILILSKKG--QKDWKQMY 274 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH--HHHHHHHHHHHhhHHHHHHhhhhcccc--chhHHHHH
Confidence 3567889999999998888 589999999999999999874 48999999766666666543 333321 34466665
Q ss_pred hhcCC
Q psy4214 85 HSWNP 89 (271)
Q Consensus 85 ~~Wd~ 89 (271)
+....
T Consensus 275 f~L~r 279 (332)
T KOG3926|consen 275 FQLRR 279 (332)
T ss_pred HHHHH
Confidence 55433
No 21
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=84.43 E-value=0.66 Score=37.11 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=42.3
Q ss_pred cccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeeccchh
Q psy4214 8 EIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFMSE 62 (271)
Q Consensus 8 ~~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l~~ 62 (271)
..+..+|.+++.-|+..+++..|.+.-.-|. .++.+ ++.||+++|.+..|.
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np---~l~~~-tdeLW~~~i~rdFp~ 52 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNP---HLIED-TDELWKKLIKRDFPE 52 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCC---Ccchh-hHHHHHHHHHhHCcC
Confidence 3567899999999999999999999999884 34433 358999999998875
No 22
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=78.26 E-value=1.5 Score=34.01 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.9
Q ss_pred cccCCCcHHHHHHHhcCCCHHHHHH
Q psy4214 8 EIISHLPEHILELLFSYLDLTDIRN 32 (271)
Q Consensus 8 ~~~~~LP~eiL~~IFs~L~~~dL~r 32 (271)
..|..||.||-..|++||+-.||..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999999965
No 23
>KOG4408|consensus
Probab=77.87 E-value=0.59 Score=45.01 Aligned_cols=49 Identities=27% Similarity=0.598 Sum_probs=43.6
Q ss_pred cCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeeccc
Q psy4214 10 ISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFM 60 (271)
Q Consensus 10 ~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l 60 (271)
...+|..++..|.+++..+++.+|+.|.++-..+.... .+|++.|.+.|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~--~lw~r~c~k~l 56 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHL--PLWNRPCKKYL 56 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcc--ccccccccccc
Confidence 45689999999999999999999999999999998765 69999996655
No 24
>KOG2243|consensus
Probab=74.45 E-value=9.2 Score=43.44 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=59.0
Q ss_pred ccCceeEEEEEEeCCCCceEEEEEeccccccccCCCcceecCCCceeeEEecCCeeEeCCcccCCCCCCCCCCCCCCCCe
Q psy4214 123 FYQGRHAWEVFWQGPLGTVAVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQGSYPQLNNPPKWEKESG 202 (271)
Q Consensus 123 fs~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l~~~g~~sllG~n~~SWgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~~~r 202 (271)
...|+.|+|.|+-..+ ++-||-+.+-. ....-+|.|++...++=.+.+-||.|... | +...+.|+.
T Consensus 1103 vkagkwyfefe~vt~g--dmrvgwarpgc-----~pd~elgadd~af~fdg~k~qrwhqg~~~--~-----grswq~gdv 1168 (5019)
T KOG2243|consen 1103 VKAGKWYFEFETVTAG--DMRVGWARPGC-----QPDQELGADDQAFAFDGFKAQRWHQGNEH--F-----GRSWQAGDV 1168 (5019)
T ss_pred eeccceEEEEEEeecc--ceeecccCCCC-----CcchhhCCccceeeeccchhhhhhccccc--c-----ccccCCCCe
Confidence 3678999999886432 35567665531 12245999999999876566889999764 2 345677899
Q ss_pred EEEEEecccccccccceeEEEEec
Q psy4214 203 LSWTVMTALYPLRRTMSSLGWHSE 226 (271)
Q Consensus 203 IGV~LD~~~~~~~~~~G~Lsfy~~ 226 (271)
||..+| .+..+.-|--+
T Consensus 1169 vgcmi~-------l~d~sm~ftln 1185 (5019)
T KOG2243|consen 1169 VGCMID-------LDDASMIFTLN 1185 (5019)
T ss_pred EEEEEe-------cccceEEEEEc
Confidence 999999 77777766654
No 25
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=45.16 E-value=50 Score=24.34 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeC---CCCceEEEEEeccc
Q psy4214 90 NDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG---PLGTVAVVGIATKD 150 (271)
Q Consensus 90 ~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~---~~Gt~~~vGVa~~~ 150 (271)
+...+||.|++|+.++.|. .++...-|...+++..|. .++|++.. .+.....+||++.+
T Consensus 7 ~~~G~nV~L~~~~~~A~R~-~sf~~giVFS~rPl~~~E-~~~v~I~~~~~~wsG~L~~GvT~~~ 68 (69)
T PF07177_consen 7 NVHGKNVRLSNDGTVARRV-SSFNNGIVFSSRPLRIGE-KFEVRIDEVEPSWSGSLRIGVTSCD 68 (69)
T ss_dssp -EE-TTEEE-SSS-EEEES-T-SSS-EEEESS-B-TT--EEEEEEEEE-SSSSS--EEEEESS-
T ss_pred cccCCCEEEcCCCeEEEec-ccCCceEEEecCCccCCC-EEEEEEEecCCCceeEEEEeeEccC
Confidence 3456789999999888872 334456888888887654 45566653 22223568887753
No 26
>PF15409 PH_8: Pleckstrin homology domain
Probab=23.18 E-value=75 Score=24.81 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=16.1
Q ss_pred CeEEEEEecccccccccceeEEEEecCC
Q psy4214 201 SGLSWTVMTALYPLRRTMSSLGWHSEDC 228 (271)
Q Consensus 201 ~rIGV~LD~~~~~~~~~~G~Lsfy~~~~ 228 (271)
.|-=.+|| .+.|+|+||.++.
T Consensus 15 ~kRyFvL~-------~~~G~LsYy~~~~ 35 (89)
T PF15409_consen 15 HKRYFVLD-------FEKGTLSYYRNQN 35 (89)
T ss_pred eeEEEEEE-------cCCcEEEEEecCC
Confidence 44556679 9999999998643
No 27
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=22.00 E-value=68 Score=25.52 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=23.1
Q ss_pred EeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEe
Q psy4214 98 IKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQ 135 (271)
Q Consensus 98 LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s 135 (271)
+++.+.+++..+. + +.|.-.++...|+.+|+|+..
T Consensus 71 ik~~~l~~~a~~t--~-~~vi~~~g~~~G~~~W~vq~P 105 (108)
T PF11393_consen 71 IKDKRLNLSAVVT--G-APVIVEEGVNNGVYAWKVQVP 105 (108)
T ss_pred HHhcceEEeeecC--C-CcEEEEEeccCCeEEEEEEec
Confidence 3456666644432 2 355666677799999999873
Done!