Query psy4214
Match_columns 271
No_of_seqs 230 out of 595
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 19:46:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emw_A SPRY domain-containing 100.0 1.1E-28 3.9E-33 218.5 10.1 151 71-229 31-184 (217)
2 2afj_A Gene rich cluster, C9 g 100.0 1.3E-28 4.6E-33 218.5 9.7 152 68-227 25-179 (226)
3 2jk9_A SPRY domain-containing 99.9 1.6E-27 5.5E-32 209.2 11.1 161 68-244 17-182 (212)
4 2vok_A 52 kDa RO protein; poly 99.9 6.6E-26 2.3E-30 197.2 13.7 134 86-246 12-159 (188)
5 3uv9_A TRIM5alpha, tripartite 99.9 4.9E-26 1.7E-30 197.5 12.7 140 85-244 14-159 (186)
6 2wl1_A Pyrin, marenostrin; amy 99.9 3.9E-25 1.3E-29 192.5 13.3 136 84-246 14-163 (191)
7 3kb5_A Tripartite motif-contai 99.9 5.9E-25 2E-29 191.6 14.3 138 85-245 14-167 (193)
8 2fbe_A Predicted: similar to R 99.9 4.1E-25 1.4E-29 194.0 12.7 134 84-244 11-157 (201)
9 4b3n_A Maltose-binding peripla 99.9 2E-21 6.7E-26 192.9 12.3 142 86-244 413-579 (602)
10 3toj_A SET1/ASH2 histone methy 99.8 1.3E-18 4.5E-23 153.3 10.8 124 85-229 13-145 (213)
11 2yyo_A SPRY domain-containing 99.5 9.7E-14 3.3E-18 118.3 11.3 122 90-230 5-132 (171)
12 1fs1_A SKP2 F-BOX, cyclin A/CD 99.4 2.6E-13 8.9E-18 93.8 4.6 47 7-55 6-52 (53)
13 3v7d_B Cell division control p 99.0 4.8E-11 1.7E-15 110.1 2.3 55 4-59 9-63 (464)
14 1p22_A F-BOX/WD-repeat protein 99.0 9.6E-11 3.3E-15 108.4 2.3 55 5-61 6-64 (435)
15 3l2o_B F-box only protein 4; s 99.0 1.4E-10 5E-15 107.3 2.1 51 9-61 4-54 (312)
16 2e31_A FBS1, F-box only protei 98.9 2E-10 6.8E-15 106.2 2.7 50 8-59 49-99 (297)
17 2ovr_B FBW7, F-BOX/WD repeat p 98.9 4.6E-10 1.6E-14 103.7 4.0 54 4-59 13-66 (445)
18 2ast_B S-phase kinase-associat 98.5 3.6E-08 1.2E-12 88.3 4.1 50 7-58 6-55 (336)
19 2p1m_B Transport inhibitor res 98.2 7.6E-07 2.6E-11 85.4 3.7 48 5-56 1-49 (594)
20 3ogk_B Coronatine-insensitive 97.7 1.5E-05 5.1E-10 76.5 2.8 34 11-44 14-48 (592)
21 2e63_A KIAA1787 protein; struc 96.2 0.051 1.7E-06 46.0 11.2 128 87-229 9-142 (170)
22 2yue_A Protein neuralized; str 76.4 14 0.00048 30.7 8.9 110 91-229 14-130 (168)
23 4hfx_A Transcription elongatio 65.4 1.3 4.4E-05 34.2 -0.0 46 13-62 13-58 (97)
No 1
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.95 E-value=1.1e-28 Score=218.47 Aligned_cols=151 Identities=39% Similarity=0.633 Sum_probs=125.7
Q ss_pred cccchHHHHHHHHhhhcCCCCCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeC-CCCceEEEEEecc
Q psy4214 71 SSLSTYKAKLRAYFHSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG-PLGTVAVVGIATK 149 (271)
Q Consensus 71 s~~P~~~~k~r~~~~~Wd~~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~-~~Gt~~~vGVa~~ 149 (271)
..+|+ .....+...+||++||++++.||+|+.+++.+|..+++++|||+++|++|+|||||++.+ ..|+.+.||||++
T Consensus 31 l~~~~-~~~~~~~~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~~~vGv~~~ 109 (217)
T 3emw_A 31 LSAPP-PDLGAQRRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATA 109 (217)
T ss_dssp HHSCC-CCHHHHHHTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTCCEEEEECT
T ss_pred hcCCC-cccccccceEeCcccCCCCEEECCCCeEEEECccCCCCCEEEeCCCccCccEEEEEEEcccCCCCceeEEEEcC
Confidence 34555 344557889999999999999999999998888877788999999999999999999986 3556789999999
Q ss_pred ccccccCCCcceecCCCceeeEEecCCeeEeCCccc--CCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecC
Q psy4214 150 DALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQ--GSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSED 227 (271)
Q Consensus 150 ~~~l~~~g~~sllG~n~~SWgl~~~~~~~~Hng~~~--~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~ 227 (271)
.++++++|+.+++|.|+.||+|.+.++..|||++.. ..||...+.+.+..+++|||+|| +++|+|+||.++
T Consensus 110 ~~~r~~~g~~~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD-------~~~G~LsFy~ng 182 (217)
T 3emw_A 110 LAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLD-------MEEGTLGYAIGG 182 (217)
T ss_dssp TSCCEESSSCCCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEE-------TTTTEEEEEETT
T ss_pred ccccccCCccccccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEE-------cCCCEEEEEECC
Confidence 999988998899999999999998777899998753 23653111245678999999999 999999999865
Q ss_pred Cc
Q psy4214 228 CQ 229 (271)
Q Consensus 228 ~~ 229 (271)
..
T Consensus 183 ~~ 184 (217)
T 3emw_A 183 TY 184 (217)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 2
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.95 E-value=1.3e-28 Score=218.54 Aligned_cols=152 Identities=39% Similarity=0.656 Sum_probs=124.6
Q ss_pred ccccccchHHHHHHHHhhhcCCCCCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeC-CCCceEEEEE
Q psy4214 68 DLLSSLSTYKAKLRAYFHSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG-PLGTVAVVGI 146 (271)
Q Consensus 68 dils~~P~~~~k~r~~~~~Wd~~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~-~~Gt~~~vGV 146 (271)
+++..+|+ ..+..+...+||++||++++.||+|+++++++|..+++++|||+++|++|+|||||++.+ ..++.+.|||
T Consensus 25 ~~l~~~p~-~~~~~~~~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~~w~vGV 103 (226)
T 2afj_A 25 EELLSAPP-PDLVAQRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGV 103 (226)
T ss_dssp HHHHSSCC-TTSSHHHHHSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCCCEEEE
T ss_pred ceeccCCC-CccccccccEEccccCCCCEEEeCCCEEEEECCCCCCcCeEEECCCccCCEEEEEEEEeccCCCCCEEEEe
Confidence 34456776 344556888999999999999999989998888777778999999999999999999986 3456689999
Q ss_pred eccccccccCCCcceecCCCceeeEEecCCeeEeCCcccC--CCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEE
Q psy4214 147 ATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQG--SYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWH 224 (271)
Q Consensus 147 a~~~~~l~~~g~~sllG~n~~SWgl~~~~~~~~Hng~~~~--~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy 224 (271)
|++.++++++++.+++|.|+.||+|.+.++.+||+++... .||.....+.+..++||||+|| |++|+|+||
T Consensus 104 ~~~s~~~~r~~~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD-------~e~G~lSFy 176 (226)
T 2afj_A 104 ATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLD-------MEEGTLGYS 176 (226)
T ss_dssp EESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEE-------TTTTEEEEE
T ss_pred cCCccccccccccccccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEE-------CCCCEEEEE
Confidence 9999888888888899999999999987778999987432 3553111224567899999999 999999999
Q ss_pred ecC
Q psy4214 225 SED 227 (271)
Q Consensus 225 ~~~ 227 (271)
.++
T Consensus 177 ~ng 179 (226)
T 2afj_A 177 IGG 179 (226)
T ss_dssp STT
T ss_pred ECC
Confidence 754
No 3
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.94 E-value=1.6e-27 Score=209.16 Aligned_cols=161 Identities=38% Similarity=0.678 Sum_probs=127.8
Q ss_pred ccccccchHHHHHHHHhhhcCCCCCCceeEEeCCC-eEEeeCCCCccchhhhccccccCceeEEEEEEeC-CCCceEEEE
Q psy4214 68 DLLSSLSTYKAKLRAYFHSWNPNDCSRNVYIKPNG-FTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG-PLGTVAVVG 145 (271)
Q Consensus 68 dils~~P~~~~k~r~~~~~Wd~~~as~nI~LS~~~-~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~-~~Gt~~~vG 145 (271)
+++..+|+... ..+...+||++||++++.||+|+ ++++++|.++++.+|||+++|++|+|||||++.+ ..++.+.||
T Consensus 17 ~~ll~~p~~~~-~~~~~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~~w~vG 95 (212)
T 2jk9_A 17 DLLLDMPPVSY-DVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVG 95 (212)
T ss_dssp HHHHHSCCCCH-HHHHHTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEE
T ss_pred hhhccCCCccc-ccccccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccCCCcEEEE
Confidence 34445666333 35788999999999999999885 6888888877889999999999999999999985 245668899
Q ss_pred EeccccccccCCCcceecCCCceeeEEecCCeeEeCCcccC--CCCCC-CCCCCCCCCCeEEEEEecccccccccceeEE
Q psy4214 146 IATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGESQG--SYPQL-NNPPKWEKESGLSWTVMTALYPLRRTMSSLG 222 (271)
Q Consensus 146 Va~~~~~l~~~g~~sllG~n~~SWgl~~~~~~~~Hng~~~~--~~p~~-~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Ls 222 (271)
||++.++++++|+.+.+|.|+.||++...++..||+++... .||.. ...+.+..+++|||+|| |++|+|+
T Consensus 96 V~~~~~~r~~~g~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD-------~e~G~ls 168 (212)
T 2jk9_A 96 VATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALD-------MDDGTLS 168 (212)
T ss_dssp EECTTSCCEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEE-------TTTTEEE
T ss_pred EEcCCccccccCcccccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEE-------CCCCEEE
Confidence 99999888767888899999999999987778999987642 25532 11345677899999999 9999999
Q ss_pred EEecCCcccccCCceeeeeeee
Q psy4214 223 WHSEDCQTKYSTPPYLLYTETQ 244 (271)
Q Consensus 223 fy~~~~~~~~~~~~~~l~~~~~ 244 (271)
||.++. .+.|+|+.
T Consensus 169 Fy~ng~--------~l~~aF~~ 182 (212)
T 2jk9_A 169 FIVDGQ--------YMGVAFRG 182 (212)
T ss_dssp EEETTE--------EEEEEECC
T ss_pred EEECCE--------EeEEEecc
Confidence 997542 23477775
No 4
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=99.93 E-value=6.6e-26 Score=197.18 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=104.9
Q ss_pred hcCCCCCCceeEEeCCCeEEee---------CCCCcc-chhhhccccccCceeEEEEEEeCCCCceEEEEEecccccccc
Q psy4214 86 SWNPNDCSRNVYIKPNGFTLHR---------NPVAQS-TDAVRGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDALLQS 155 (271)
Q Consensus 86 ~Wd~~~as~nI~LS~~~~T~~~---------~P~~~s-t~qVrg~~gfs~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l~~ 155 (271)
+.|++||++++.||+|+.++.. +|.++. ..+|+|+++|++|+|||||++++. +.+.||||++. +.|
T Consensus 12 tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~--~~w~vGV~~~s--i~R 87 (188)
T 2vok_A 12 TLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQK--EAWDLGVCRDS--VQR 87 (188)
T ss_dssp CBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTTC--SCEEEEEEETT--CCC
T ss_pred EECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecCC--ceEEEEEeeCC--cCC
Confidence 7899999999999999877743 233433 369999999999999999999753 34889999987 556
Q ss_pred CCCcceecCCCceeeEEecCC--eeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCccccc
Q psy4214 156 HGYLALIGSDSESWGWNIVDN--RILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQTKYS 233 (271)
Q Consensus 156 ~g~~sllG~n~~SWgl~~~~~--~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~~~~~ 233 (271)
+|. ..+|.|+.+|++.+.++ .++|+.... ++. . ..++||||+|| |++|+||||. .+
T Consensus 88 kg~-~~~~~~~~~W~l~~~~~~y~~~~~~~~~--l~~---~---~~~~rVGVfLD-------ye~G~lSFY~------v~ 145 (188)
T 2vok_A 88 KGQ-FSLSPENGFWTIWLWQDSYEAGTSPQTT--LHI---Q---VPPCQIGIFVD-------YEAGVVSFYN------IT 145 (188)
T ss_dssp SSC-CCCSTTTTEEEEEEETTEEEECSSSCEE--ECC---S---SCCSEEEEEEE-------TTTTEEEEEE------TT
T ss_pred CCc-cccCCCCCEEEEEEECCEEEEEeCCccC--Eec---C---CCCCEEEEEEE-------cCCCEEEEEE------CC
Confidence 664 47999999999988654 578886432 210 1 24799999999 9999999999 44
Q ss_pred CCc-eeeeeeee-ee
Q psy4214 234 TPP-YLLYTETQ-KY 246 (271)
Q Consensus 234 ~~~-~~l~~~~~-~~ 246 (271)
+ + .|||||+. .+
T Consensus 146 ~-~~~~I~tF~~~~F 159 (188)
T 2vok_A 146 D-HGSLIYTFSECVF 159 (188)
T ss_dssp T-TTEEEEEECSCCC
T ss_pred C-CCeeeEEecCCCC
Confidence 4 5 89999986 44
No 5
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=99.93 E-value=4.9e-26 Score=197.45 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=106.6
Q ss_pred hhcCCCCCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeCCCCceEEEEEeccccccccCCC--ccee
Q psy4214 85 HSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDALLQSHGY--LALI 162 (271)
Q Consensus 85 ~~Wd~~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l~~~g~--~sll 162 (271)
-+.||+||++ +.||+|+.++.+.+ ..||||+++|++|||||||++++. +.+.||||+..+.+...+. ...+
T Consensus 14 vTLDp~TA~~-l~lSed~r~Vr~~~----~~~VLG~~~ftsGrHYWEVeV~~~--~~W~vGV~~~~~~r~~~~~~~~~~~ 86 (186)
T 3uv9_A 14 VTLATNNISH-AVIAEDKRQVSSRA----GTGVLGSQSITSGKHYWEVDVSKK--SAWILGVCAGFQSDAMYNIEQNENY 86 (186)
T ss_dssp CCCCCCSSCC-CEECTTSSCEECCC----SSCEECSSCBCSSEEEEEEECTTC--SCEEEEEESCSTTTTTTTHHHHTCC
T ss_pred eEeCCCCcCC-ceECCCCCEEeecC----CCcCcCCCCCCCCCEEEEEEEcCC--CcEEEEEEEEEecccccccCCCccc
Confidence 4789999985 88999988886543 358999999999999999999753 3388999998876654432 3579
Q ss_pred cCCCceeeEEecCC---eeEeCCcccCCC-CCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCcccccCCcee
Q psy4214 163 GSDSESWGWNIVDN---RILHNGESQGSY-PQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQTKYSTPPYL 238 (271)
Q Consensus 163 G~n~~SWgl~~~~~---~~~Hng~~~~~~-p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~~~~~~~~~~ 238 (271)
|.|+.+|++.+.++ .++|++...... |.....+....++||||+|| |++|+||||+ .+..+.|
T Consensus 87 ~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLD-------ye~G~lSFYn------v~d~~~l 153 (186)
T 3uv9_A 87 QPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVD-------YEACTVSFFN------ITNHGFL 153 (186)
T ss_dssp CGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEE-------TTTTEEEEEE------TTTTTEE
T ss_pred CCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEee-------cCCCEEEEEe------CCCCceE
Confidence 99999999987654 489998654311 10000112245799999999 9999999999 6677889
Q ss_pred eeeeee
Q psy4214 239 LYTETQ 244 (271)
Q Consensus 239 l~~~~~ 244 (271)
||||+|
T Consensus 154 I~tF~~ 159 (186)
T 3uv9_A 154 IYKFSQ 159 (186)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 999976
No 6
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=99.92 E-value=3.9e-25 Score=192.50 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=104.4
Q ss_pred hhhcCCCCCCceeEEeCCCeEEee---------CCCCcc-chhhhccccccCceeEEEEEEeCCCCceEEEEEecccccc
Q psy4214 84 FHSWNPNDCSRNVYIKPNGFTLHR---------NPVAQS-TDAVRGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDALL 153 (271)
Q Consensus 84 ~~~Wd~~~as~nI~LS~~~~T~~~---------~P~~~s-t~qVrg~~gfs~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l 153 (271)
..++|++||++++.||+|+.++.. +|.++. ..+|+|+++|++|+|||||++++. +.+.||||++. +
T Consensus 14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~~--~~w~vGV~~~s--~ 89 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGDK--TAWILGACKTS--I 89 (191)
T ss_dssp CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTTC--SCEEEEEEETT--C
T ss_pred eeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCCC--CEEEEEEeeCC--c
Confidence 458999999999999999887753 233432 469999999999999999999753 34889999987 5
Q ss_pred ccCCCcceecCCCceeeEEec-CC--eeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCcc
Q psy4214 154 QSHGYLALIGSDSESWGWNIV-DN--RILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQT 230 (271)
Q Consensus 154 ~~~g~~sllG~n~~SWgl~~~-~~--~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~~ 230 (271)
.|+|. ..+|.|+.+|++.+. .+ .++|+....- . . ...++||||+|| |++|+||||..
T Consensus 90 ~Rkg~-~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l-~-----~--~~~~~rVGVfLD-------ye~G~lSFY~v---- 149 (191)
T 2wl1_A 90 SRKGN-MTLSPENGYWVVIMMKENEYQASSVPPTRL-L-----I--KEPPKRVGIFVD-------YRVGSISFYNV---- 149 (191)
T ss_dssp CSSSC-CCCCGGGTEEEEEEEETTEEEECCSSCEEC-C-----C--SSCCSEEEEEEE-------TTTTEEEEEET----
T ss_pred CCCCc-cccCCCCCEEEEEEeCCCEEEEEcCCCccC-c-----c--ccCCcEEEEEEE-------cCCCEEEEEEC----
Confidence 56663 468999999999875 23 4788764321 1 1 134799999999 99999999993
Q ss_pred cccCCceeeeeeee-ee
Q psy4214 231 KYSTPPYLLYTETQ-KY 246 (271)
Q Consensus 231 ~~~~~~~~l~~~~~-~~ 246 (271)
+...|||||+. ..
T Consensus 150 ---~~~~~i~tF~~~~F 163 (191)
T 2wl1_A 150 ---TARSHIYTFASCSF 163 (191)
T ss_dssp ---TTTEEEEEECCCCC
T ss_pred ---CCCcceEEeCCCCC
Confidence 24689999986 44
No 7
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=191.57 Aligned_cols=138 Identities=13% Similarity=0.202 Sum_probs=103.0
Q ss_pred hhcCCCCCCceeEEeCCCeEEee----------CCCCcc-chhhhccccccCceeEEEEEEeCCCCceEEEEEecccccc
Q psy4214 85 HSWNPNDCSRNVYIKPNGFTLHR----------NPVAQS-TDAVRGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDALL 153 (271)
Q Consensus 85 ~~Wd~~~as~nI~LS~~~~T~~~----------~P~~~s-t~qVrg~~gfs~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l 153 (271)
-++|++||++++.||+|+.++.. +|.++. ..||+|+++|++|||||||++++.. .+.||||++. +
T Consensus 14 vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~~~--~W~lGV~~~s--~ 89 (193)
T 3kb5_A 14 LTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGDKP--RWALGVIAAE--A 89 (193)
T ss_dssp CCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTTCS--SEEEEEEETT--S
T ss_pred EEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCcCc--eEEEEEeeCC--c
Confidence 48999999999999998776643 233332 3699999999999999999997542 3889999997 5
Q ss_pred ccCCCcceecCCCceeeEEecCC---eeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCcc
Q psy4214 154 QSHGYLALIGSDSESWGWNIVDN---RILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQT 230 (271)
Q Consensus 154 ~~~g~~sllG~n~~SWgl~~~~~---~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~~ 230 (271)
.|+|... ++.|+.+|++.+.++ .++|++.....++ .+ -+.+.||||+|| |++|+||||.
T Consensus 90 ~Rkg~~~-~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~----~~-~~~~~rVGVfLD-------ye~G~lSFY~----- 151 (193)
T 3kb5_A 90 PRRGRLH-AVPSQGLWLLGLREGKILEAHVEAKEPRALR----SP-ERRPTRIGLYLS-------FGDGVLSFYD----- 151 (193)
T ss_dssp CCSSSCC-CSGGGTEEEEEEETTTEEEECCSSSSCEECC----CC-SSCCSEEEEEEE-------TTTTEEEEEE-----
T ss_pred CcCCCcC-CCCCCCEEEEEEeCCCEEEEEeCCCccEEEe----ec-CCCCCEEEEEEE-------cCCCEEEEEe-----
Confidence 5566433 466888999987543 3577764321021 10 134689999999 9999999999
Q ss_pred cccCC--ceeeeeeeee
Q psy4214 231 KYSTP--PYLLYTETQK 245 (271)
Q Consensus 231 ~~~~~--~~~l~~~~~~ 245 (271)
.+++ +.|||||+..
T Consensus 152 -v~~~~~~s~I~tF~~~ 167 (193)
T 3kb5_A 152 -ASDADALVPLFAFHER 167 (193)
T ss_dssp -CCSTTCCEEEEEECSC
T ss_pred -CCCCCCceEEEEeCCC
Confidence 5554 8999999764
No 8
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=99.92 E-value=4.1e-25 Score=194.03 Aligned_cols=134 Identities=15% Similarity=0.111 Sum_probs=102.6
Q ss_pred hhhcCCCCCCceeEEeCCCeEEee---------CCCCcc-chhhhccccccCceeEEEEEEeCCCCceEEEEEecccccc
Q psy4214 84 FHSWNPNDCSRNVYIKPNGFTLHR---------NPVAQS-TDAVRGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDALL 153 (271)
Q Consensus 84 ~~~Wd~~~as~nI~LS~~~~T~~~---------~P~~~s-t~qVrg~~gfs~G~HYWEV~~s~~~Gt~~~vGVa~~~~~l 153 (271)
..++|++||++++.||+|+.++.. +|.++. ..+|||+++|++|+|||||++++. +.+.||||++. +
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~--~~w~vGV~~~s--i 86 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTS--QVWDVGVCKES--V 86 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTTC--SEEEEEEEETT--S
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCCC--CEEEEEEeeCc--c
Confidence 358999999999999999877753 233433 469999999999999999999753 34889999987 5
Q ss_pred ccCCCcceecCCCceeeEEecCC---eeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCcc
Q psy4214 154 QSHGYLALIGSDSESWGWNIVDN---RILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQT 230 (271)
Q Consensus 154 ~~~g~~sllG~n~~SWgl~~~~~---~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~~ 230 (271)
.|+|. ..+|.++.+|++.+.++ .++|+ ..+. ++ ..+.++||||+|| |++|+||||.
T Consensus 87 ~Rkg~-~~~~~~~g~W~l~~~~~~~y~~~~~-~~~~-l~------~~~~~~rVGVfLD-------ye~G~lSFY~----- 145 (201)
T 2fbe_A 87 NRQGK-IELSSEHGFLTVGCREGKVFAASTV-PMTP-LW------VSPQLHRVGIFLD-------VGMRSIAFYN----- 145 (201)
T ss_dssp CCSSC-CCCCTTTTEEEEEEETTTEEEECSS-SCEE-EC------CCTTCCEEEEEEE-------TTTTEEEEEE-----
T ss_pred CCCCc-ccccCCCCEEEEEEeCCCEEEEEcC-Cccc-Cc------cCCCCCEEEEEEE-------cCCCEEEEEe-----
Confidence 56664 35889999999988543 35663 3322 22 1135799999999 9999999999
Q ss_pred cccCCceeeeeeee
Q psy4214 231 KYSTPPYLLYTETQ 244 (271)
Q Consensus 231 ~~~~~~~~l~~~~~ 244 (271)
.++ +.|||||+.
T Consensus 146 -v~~-~~~i~tF~~ 157 (201)
T 2fbe_A 146 -VSD-GCHIYTFIE 157 (201)
T ss_dssp -TTT-TEEEEEECS
T ss_pred -CCC-CceeEEEcC
Confidence 333 789999986
No 9
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=99.85 E-value=2e-21 Score=192.94 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=99.2
Q ss_pred hcCCCCCCceeEEeCCCeEEee-----------------CCCCcc-chhhhccccccCceeEEEEEEeCCCCceEEEEEe
Q psy4214 86 SWNPNDCSRNVYIKPNGFTLHR-----------------NPVAQS-TDAVRGKMGFYQGRHAWEVFWQGPLGTVAVVGIA 147 (271)
Q Consensus 86 ~Wd~~~as~nI~LS~~~~T~~~-----------------~P~~~s-t~qVrg~~gfs~G~HYWEV~~s~~~Gt~~~vGVa 147 (271)
+.||+||++ +.||+|+++|++ ||.++. +.+|||.++|++|||||||++.+. +.|.||||
T Consensus 413 tldp~ta~~-l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~~~--~~w~~Gv~ 489 (602)
T 4b3n_A 413 TLATNNISH-AVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVSKK--SAWILGVC 489 (602)
T ss_dssp CEECCSCCS-CEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECTTC--SCEEEEEE
T ss_pred EeCCCCCCc-eeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEECCC--eeEEEEEe
Confidence 589999985 779999888852 222332 368999999999999999999653 34889999
Q ss_pred cccccccc---CCCcceecCCCceeeEEecCC---eeEeCCcccC-CCCCCCCCCCCCCCCeEEEEEeccccccccccee
Q psy4214 148 TKDALLQS---HGYLALIGSDSESWGWNIVDN---RILHNGESQG-SYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSS 220 (271)
Q Consensus 148 ~~~~~l~~---~g~~sllG~n~~SWgl~~~~~---~~~Hng~~~~-~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~ 220 (271)
+....+.. +| ...++-++.+|++.+.++ .++|++.... .-|.......-..++||||+|| |++|.
T Consensus 490 ~~~~~~~~~~~~~-~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld-------~~~g~ 561 (602)
T 4b3n_A 490 AGFQSDAMYNIEQ-NENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVD-------YEACT 561 (602)
T ss_dssp CCCCTTTSSTHHH-HCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEE-------TTTTE
T ss_pred eccccccccccCC-CcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEEe-------cCCCE
Confidence 87544432 22 234677788999887544 4799986532 1110000011235799999999 99999
Q ss_pred EEEEecCCcccccCCceeeeeeee
Q psy4214 221 LGWHSEDCQTKYSTPPYLLYTETQ 244 (271)
Q Consensus 221 Lsfy~~~~~~~~~~~~~~l~~~~~ 244 (271)
||||. .+....|||||++
T Consensus 562 ~sFy~------~~~~~~~i~tf~~ 579 (602)
T 4b3n_A 562 VSFFN------ITNHGFLIYKFSQ 579 (602)
T ss_dssp EEEEE------TTTTTEEEEEECS
T ss_pred EEEEe------CCCCceeeEeCCC
Confidence 99999 5666689999975
No 10
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=153.25 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=105.6
Q ss_pred hhcCCCCCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeC-CCCceEEEEEeccccccccCCCcceec
Q psy4214 85 HSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG-PLGTVAVVGIATKDALLQSHGYLALIG 163 (271)
Q Consensus 85 ~~Wd~~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~-~~Gt~~~vGVa~~~~~l~~~g~~sllG 163 (271)
.+||++|+++++.|++|+++++.. .+..+||++.++.+|+|||||++.. +.++.+.||++++.++++ ..+|
T Consensus 13 v~ld~~d~~~~l~ls~d~l~v~~~---~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~-----~~~G 84 (213)
T 3toj_A 13 VLLALHDRAPQLKISDDRLTVVGE---KGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQ-----APLG 84 (213)
T ss_dssp CCEEEEEECTTSEECTTSSEEECC---SSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTT-----SCTT
T ss_pred EEechhhCCCCEEEcCCCcEEEeC---CceeEEEeCCCccCCeEEEEEEEeecCCCceEEEEeccCCcccc-----cCCC
Confidence 489999999999999999999763 3578999999999999999999986 335678899999987665 4699
Q ss_pred CCCceeeEEecCCeeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccc--------eeEEEEecCCc
Q psy4214 164 SDSESWGWNIVDNRILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTM--------SSLGWHSEDCQ 229 (271)
Q Consensus 164 ~n~~SWgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~--------G~Lsfy~~~~~ 229 (271)
.|..||++.-.++..||++.... | .+.|..+++||+.|| ++. |+|+||.|+..
T Consensus 85 ~d~~S~gy~~~~G~~~h~~~~~~-y-----g~~~~~GDvIGc~ld-------~~~~~~~~~~~g~i~Ft~NG~~ 145 (213)
T 3toj_A 85 YDKFSYSWRSKKGTKFHQSIGKH-Y-----SSGYGQGDVLGFYIN-------LPEDTISGRGSSEIIFYKNGVN 145 (213)
T ss_dssp SSTTEEEEETTTTCEEETTEEEC-C-----SCCCCTTCEEEEEEE-------ECCC-----CCCEEEEEETTEE
T ss_pred CCCCcEEEECCCCeEEeCCcCcc-c-----CCCCCCCCEEEEEEE-------cCCCccccCCccEEEEEeCCee
Confidence 99999999866778999987655 5 456789999999999 888 89999998655
No 11
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=99.50 E-value=9.7e-14 Score=118.30 Aligned_cols=122 Identities=9% Similarity=0.124 Sum_probs=97.9
Q ss_pred CCCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeC-CCCceEEEEEeccccccccCCCcceecCCCce
Q psy4214 90 NDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG-PLGTVAVVGIATKDALLQSHGYLALIGSDSES 168 (271)
Q Consensus 90 ~~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~-~~Gt~~~vGVa~~~~~l~~~g~~sllG~n~~S 168 (271)
.|.+.+|.+++++++++.++ +++..||++.++.+|+|||||++.. ..+..+.||++++..++. .++|.+..|
T Consensus 5 ~dr~~~l~~~~d~l~~~~~~--~~~~~vra~~p~~~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~-----~~~G~d~~S 77 (171)
T 2yyo_A 5 SSGFKHILVDGDTLSYHGNS--GEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLD-----HQPGWLPDS 77 (171)
T ss_dssp -CEEESEEEETTEEEECCCS--SCCEEEECSSCCCSSSCEEEEEEEEETTTCCCEEEEECTTCCTT-----SCTTSSTTC
T ss_pred ccCcceEEEcCCEEEEeCCC--CceeEEEECCCCCCCCEEEEEEEEECCCCcEEEEEecCCCCCCc-----cCCCccCCE
Confidence 46667888888888887664 4678999999999999999999986 344568899999987765 368999999
Q ss_pred eeEEecCCeeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccc-----eeEEEEecCCcc
Q psy4214 169 WGWNIVDNRILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTM-----SSLGWHSEDCQT 230 (271)
Q Consensus 169 Wgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~-----G~Lsfy~~~~~~ 230 (271)
|++.-.++..+|+......| .+.|..++.||+.|| .+. |+|.|+.|...+
T Consensus 78 ~gy~~~dG~~~~~~~~~~~y-----g~~f~~GDvIGc~id-------~~~~~~~~~~i~Ft~NG~~l 132 (171)
T 2yyo_A 78 VAYHADDGKLYNGRAKGRQF-----GSKCNSGDRIGCGIE-------PVSFDVQTAQIFFTKNGKRV 132 (171)
T ss_dssp EEEETTTCCEESSSSCCBCC-----SCCCCTTCEEEEEEC-------GGGGSSSCEEEEEEETTEEE
T ss_pred EEEEcCCCeEEeCCCCCCcC-----CCCCCCCCEEEEEEE-------eccCCCCcEEEEEEECCEEc
Confidence 99987677889985322225 567889999999999 774 999999987663
No 12
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.38 E-value=2.6e-13 Score=93.79 Aligned_cols=47 Identities=32% Similarity=0.617 Sum_probs=39.3
Q ss_pred ccccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhhe
Q psy4214 7 YEIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVH 55 (271)
Q Consensus 7 ~~~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~ 55 (271)
...+..||+||+.+||+||+++||++|++|||+|+.++.++ .+|+++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~--~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE--SLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG--GGC---
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh--HHHHhc
Confidence 45688999999999999999999999999999999999865 799865
No 13
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.04 E-value=4.8e-11 Score=110.12 Aligned_cols=55 Identities=24% Similarity=0.520 Sum_probs=48.3
Q ss_pred CccccccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeecc
Q psy4214 4 GYEYEIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRF 59 (271)
Q Consensus 4 ~~~~~~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~ 59 (271)
.+..|.+..||+||+++||+|||++||++|++|||+|++++.+. ..+|+++|.++
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~-~~~w~~~~~~~ 63 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKS-TSLWKKLLISE 63 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTC-HHHHHHHHHHT
T ss_pred ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcc
Confidence 34567888999999999999999999999999999999999862 38999998654
No 14
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.99 E-value=9.6e-11 Score=108.38 Aligned_cols=55 Identities=31% Similarity=0.665 Sum_probs=50.0
Q ss_pred ccccccCCCcHH----HHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeeccch
Q psy4214 5 YEYEIISHLPEH----ILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFMS 61 (271)
Q Consensus 5 ~~~~~~~~LP~e----iL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l~ 61 (271)
+..|.+..||+| |+++||+|||++||++|++|||+|++++.|+ .+|+++|.+.+.
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~--~~w~~~~~~~~~ 64 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG--MLWKKLIERMVR 64 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT--THHHHHHHHHHT
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHhhcC
Confidence 456888899999 9999999999999999999999999999875 899999988653
No 15
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.96 E-value=1.4e-10 Score=107.32 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=46.9
Q ss_pred ccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeeccch
Q psy4214 9 IISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFMS 61 (271)
Q Consensus 9 ~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l~ 61 (271)
.++.||+||+++||+||+++||++|++|||+|+.+++|+ .|||.+|.+.++
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~--~LWr~~l~rd~~ 54 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP--ILWRYFLLRDLP 54 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH--HHHHHHHHSSGG
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc--hHHHHHHhccCC
Confidence 467899999999999999999999999999999999876 899999987654
No 16
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.95 E-value=2e-10 Score=106.18 Aligned_cols=50 Identities=30% Similarity=0.671 Sum_probs=46.3
Q ss_pred cccCCCcHHHHHHHhcCCCHHHHH-HHHhhhHHHHHhhhccccchhhheeecc
Q psy4214 8 EIISHLPEHILELLFSYLDLTDIR-NCMLVCKKWYTLLCNEKNEVWRVHCLRF 59 (271)
Q Consensus 8 ~~~~~LP~eiL~~IFs~L~~~dL~-rcs~VCk~W~~~~~~~~~~lW~~~~~~~ 59 (271)
..+..||+|||+.||++||+++|+ +|++|||+|+.+++|+ .+|+++|.+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~--~~w~~~~~~~ 99 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGA--PLWLLKCQQE 99 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSH--HHHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcCh--HHHHHHhhcc
Confidence 467889999999999999999999 9999999999999875 8999999775
No 17
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.92 E-value=4.6e-10 Score=103.66 Aligned_cols=54 Identities=24% Similarity=0.575 Sum_probs=48.8
Q ss_pred CccccccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeecc
Q psy4214 4 GYEYEIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRF 59 (271)
Q Consensus 4 ~~~~~~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~ 59 (271)
.+..+.+..||+|++.+||+||+++||++|++|||+|+.++.++ .+|+++|.+.
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~--~~w~~~~~~~ 66 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN--LLWREKCKEE 66 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS--HHHHHHHTTT
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCch--hHhhhheeec
Confidence 34568899999999999999999999999999999999999865 7999999754
No 18
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.55 E-value=3.6e-08 Score=88.27 Aligned_cols=50 Identities=32% Similarity=0.584 Sum_probs=44.4
Q ss_pred ccccCCCcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeec
Q psy4214 7 YEIISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLR 58 (271)
Q Consensus 7 ~~~~~~LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~ 58 (271)
...|+.||+||+.+||+||+.+|+.+|++|||+|+.++.++ .+|+.+...
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~--~~~~~l~l~ 55 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE--SLWQTLDLT 55 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS--TTSSEEECT
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc--hhheeeccc
Confidence 35689999999999999999999999999999999999875 689987654
No 19
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.17 E-value=7.6e-07 Score=85.41 Aligned_cols=48 Identities=31% Similarity=0.538 Sum_probs=33.9
Q ss_pred ccccccCCCcHHHHHHHhcCCC-HHHHHHHHhhhHHHHHhhhccccchhhhee
Q psy4214 5 YEYEIISHLPEHILELLFSYLD-LTDIRNCMLVCKKWYTLLCNEKNEVWRVHC 56 (271)
Q Consensus 5 ~~~~~~~~LP~eiL~~IFs~L~-~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~ 56 (271)
|+.+.++.||+|||.+||+||+ .+|+.+|++|||+|+++.. ..|+.+.
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~----~~~~~l~ 49 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER----WCRRKVF 49 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHH----HHCCEEE
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh----hhceEEe
Confidence 3567899999999999999999 9999999999999999932 4566543
No 20
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.67 E-value=1.5e-05 Score=76.49 Aligned_cols=34 Identities=24% Similarity=0.673 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHhcCC-CHHHHHHHHhhhHHHHHhh
Q psy4214 11 SHLPEHILELLFSYL-DLTDIRNCMLVCKKWYTLL 44 (271)
Q Consensus 11 ~~LP~eiL~~IFs~L-~~~dL~rcs~VCk~W~~~~ 44 (271)
..||+||+.+||+|| +.+|+.+|++|||+|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 479999999999999 8999999999999999994
No 21
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.051 Score=46.00 Aligned_cols=128 Identities=17% Similarity=0.194 Sum_probs=82.7
Q ss_pred cCCCCCCceeEEeCCCeEEeeC-C-CCccchhhhccccccCceeEEEEEEeC---CCCceEEEEEeccccccccCCCcce
Q psy4214 87 WNPNDCSRNVYIKPNGFTLHRN-P-VAQSTDAVRGKMGFYQGRHAWEVFWQG---PLGTVAVVGIATKDALLQSHGYLAL 161 (271)
Q Consensus 87 Wd~~~as~nI~LS~~~~T~~~~-P-~~~st~qVrg~~gfs~G~HYWEV~~s~---~~Gt~~~vGVa~~~~~l~~~g~~sl 161 (271)
+.+ ....+|.|++++.++.|. | .++...-|...+++..|. .++|++.+ .+.-...+||++.+..--+. ..+.
T Consensus 9 FH~-~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~l-P~~~ 85 (170)
T 2e63_A 9 LHP-RTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGR-VFTVRIDRKVNSWSGSIEIGVTALDPSVLDF-PSSA 85 (170)
T ss_dssp CCS-CCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTC-EEEEEEEEECCSSCCCCEEEEESSCTTSCCC-CSSG
T ss_pred ccc-ccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCC-EEEEEEEeecCCcceeEEEEEEccChhhccC-CCCh
Confidence 344 456789999999899875 2 345557888999998875 46677653 23223679999986432111 1222
Q ss_pred ecCCCceeeEEecCCeeEeCCcccC-CCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCc
Q psy4214 162 IGSDSESWGWNIVDNRILHNGESQG-SYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQ 229 (271)
Q Consensus 162 lG~n~~SWgl~~~~~~~~Hng~~~~-~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~ 229 (271)
..-.+.+|.++. ..+.+|++... .|.. +......+++||+.+| ..|.|-|+.|+..
T Consensus 86 ~~L~~~~Wv~~~--~~v~~ng~~~~e~~~~--~l~~l~~Gd~ig~~~~--------~~G~l~~~iNg~~ 142 (170)
T 2e63_A 86 TGLKGGSWVVSG--CSVLRDGRSVLEEYGQ--DLDQLGEGDRVGVERT--------VAGELRLWVNGRD 142 (170)
T ss_dssp GGCCSSEEEESS--SEEEESSCEEEESCSS--CGGGCCSSCCEEEEEC--------TTSCEEEEESSCE
T ss_pred hhCCCCeEEEec--cccccCCcccchhccc--cccccCCCCEEEEEEc--------CCcEEEEEECCcc
Confidence 333568998763 56778876532 1310 0112247899999999 8899999988544
No 22
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=76.44 E-value=14 Score=30.73 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCceeEEeCCCeEEeeCCCCccchhhhccccccCceeEEEEEEeC---CCCceEEEEEeccccc-ccc-C-CC-cceec
Q psy4214 91 DCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFWQG---PLGTVAVVGIATKDAL-LQS-H-GY-LALIG 163 (271)
Q Consensus 91 ~as~nI~LS~~~~T~~~~P~~~st~qVrg~~gfs~G~HYWEV~~s~---~~Gt~~~vGVa~~~~~-l~~-~-g~-~sllG 163 (271)
...+||.|++++.++.|. .++...-|...+++..|.. ++|++.+ .+.-...+||++.+.. ++. . .+ ..-|-
T Consensus 14 ~~G~nI~L~~~~~~A~R~-~sf~~givFS~RPl~~~E~-~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~lP~~a~~dL~ 91 (168)
T 2yue_A 14 VHGDNIRISRDGTLARRF-ESFCRAITFSARPVRINER-ICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLT 91 (168)
T ss_dssp EECTTEEECCSSCCEEEC-SCSSCCEEEESSCCCSSCC-EEEEEEECCSSSSSCCEEEEESSCGGGTTTCCCSSSSSHHH
T ss_pred ccCCCeEECCCCcEEEec-ccCCceEEEECCCCcCCCE-EEEEEEeecCCcceeEEEeeeecCHHHcCCCCCCcCchHHh
Confidence 445789999998888876 4555578888999977643 5677653 2222367999998744 321 0 11 11122
Q ss_pred CCCceeeEEecCCeeEeCCcccCCCCCCCCCCCCCCCCeEEEEEecccccccccceeEEEEecCCc
Q psy4214 164 SDSESWGWNIVDNRILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQ 229 (271)
Q Consensus 164 ~n~~SWgl~~~~~~~~Hng~~~~~~p~~~~~~~~~~~~rIGV~LD~~~~~~~~~~G~Lsfy~~~~~ 229 (271)
.-...|...+. + . | . ..++++++.+| ..|.|-|+.|+..
T Consensus 92 ~~~~~W~~~l~------~----~-~-----~---~~g~~l~f~v~--------~~G~l~~~iNg~~ 130 (168)
T 2yue_A 92 NRPGFWAKALH------E----Q-Y-----C---EKDNILYYYVN--------GAGDVIYGINNEE 130 (168)
T ss_dssp HSTTBCCEECC------S----T-T-----C---CSSCEEEEEEC--------TTSEEEEEESSCE
T ss_pred cCCCEEEEEec------c----c-c-----c---cCCCEEEEEEc--------CCCEEEEEECCCc
Confidence 33457754321 1 1 2 1 24789999999 8999999998544
No 23
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=65.36 E-value=1.3 Score=34.23 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=25.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHhhhHHHHHhhhccccchhhheeeccchh
Q psy4214 13 LPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFMSE 62 (271)
Q Consensus 13 LP~eiL~~IFs~L~~~dL~rcs~VCk~W~~~~~~~~~~lW~~~~~~~l~~ 62 (271)
.|-++|.-|+...++.+|.+.-.-|- .++.+. +.||+++|.+..+.
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP---~L~~dT-deLWk~~c~rdF~~ 58 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNH---VLIEET-DQLWKVHCHRDFKE 58 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC---------CC-HHHHHHHC----CC
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCc---ccchhh-HHHHHHHHHhHCcc
Confidence 68899999999999999999988886 455544 68999999998875
Done!