RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4214
         (271 letters)



>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 217

 Score = 98.7 bits (245), Expect = 1e-25
 Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 3/124 (2%)

Query: 66  KSDLLSSLSTYKAKLRAYFHSWNPNDCSRNVYIKPNG-FTLHRNPVAQSTDAVRGKMGFY 124
           + D+L  +      L+   HSWN  D S N+++K +   T HR+PVAQSTD +RGK+G  
Sbjct: 6   RIDILLDMPPASRDLQLK-HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLT 64

Query: 125 QGRHAWEVFW-QGPLGTVAVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGE 183
           +G H WE++W     GT AVVG+ T DA L S GY +L+GS  +SWGW++  N++ H+ +
Sbjct: 65  KGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSK 124

Query: 184 SQGS 187
           +   
Sbjct: 125 NCAG 128


>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
           protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 213

 Score = 86.1 bits (212), Expect = 5e-21
 Identities = 55/116 (47%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 85  HSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAVRGKMGFYQGRHAWEVFW-QGPLGTVAV 143
           H WNP DCS N+ +K  G    R PVAQSTD VRGK G+ +G HAWE+ W     GT AV
Sbjct: 35  HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAV 94

Query: 144 VGIATKDALLQSHGYLALIGSDSESWGWNIVDNRILHNGE--SQGSYPQLNNPPKW 197
           VG+AT  A LQ+  Y AL+GS+SESWGW+I   ++ H  +      YP      + 
Sbjct: 95  VGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQL 150


>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 100

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 10 ISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFMSENVIKSDL 69
          I+ LP  I   +F+YL   DI N + V + W  ++      +W+   +    EN +    
Sbjct: 6  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKS-TSLWKKLLIS---ENFVSPK- 60

Query: 70 LSSLSTYKAKLRAYFHSWNPNDCSRNVYIK 99
              ++   KL   +   +  D  R  +++
Sbjct: 61 --GFNSLNLKLSQKYPKLSQQDRLRLSFLE 88


>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing
          protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 10 ISHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRF 59
          IS LP+ +   + S+L+  D+      C+ W  L  +  N +WR  C   
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED--NLLWREKCKEE 66


>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1
          (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 9  IISHLPE----HILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVWRVHCLRFM 60
           I+ LP     HI E + SYLD   +    LVCK+WY +  +    +W+    R +
Sbjct: 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD--GMLWKKLIERMV 63


>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 41

 Score = 43.9 bits (104), Expect = 3e-07
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 SHLPEHILELLFSYLDLTDIRNCMLVCKKWYTLLCNEKNEVW 52
            LP+ +L  +FS L L ++     VCK+WY L  +E   +W
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE--SLW 41


>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 179

 Score = 26.9 bits (59), Expect = 2.3
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 117 VRGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDA-------LLQSHGYLALIGSDSESW 169
           V G   F+ G+H WEV   G       +G+            L    G+  +   + + +
Sbjct: 45  VLGAQHFHSGKHYWEVDVTG--KEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKY 102

Query: 170 GWNIVDNRILH 180
                    LH
Sbjct: 103 EAGTYPQTPLH 113


>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 150

 Score = 26.0 bits (57), Expect = 3.7
 Identities = 3/29 (10%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 3   NGYEYEIISHLPEHILELLFSYLDLTDIR 31
            G+   +++H+     +++    D  +  
Sbjct: 97  GGFRK-VVAHVTGGYRKVVERVEDEVEAE 124


>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max)
           [TaxId: 3847]}
          Length = 304

 Score = 26.2 bits (57), Expect = 5.1
 Identities = 25/202 (12%), Positives = 53/202 (26%), Gaps = 16/202 (7%)

Query: 62  ENVIKSDLLSSLSTYKAK----LRAYFHSWNPNDCSRNVYIKPNGFTLHRNPVAQSTDAV 117
             ++   +  +  T        +R +FH      C  +V +              + +++
Sbjct: 15  FPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSI 74

Query: 118 RGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDALLQSHGYLALIGSDSESWGWNIVDNR 177
           RG       + A E      +    ++ IA + A +   G                  NR
Sbjct: 75  RGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGP--GWPVPLGRRDSL-TANR 131

Query: 178 ILHNGESQGSYPQLNNPPKWEKESGLSWTVMTALYPLRRTMSSLGWHSEDCQTKYSTPPY 237
            L N      +  L          GL+   +           + G      +        
Sbjct: 132 TLANQNLPAPFFNLTQLKASFAVQGLNTLDLVT----LSGGHTFGR----ARCSTFINRL 183

Query: 238 LLYTETQKYQWCTLDPHWMAEL 259
             ++ T       L+  ++  L
Sbjct: 184 YNFSNTGNPDPT-LNTTYLEVL 204


>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 188

 Score = 25.7 bits (56), Expect = 5.2
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 117 VRGKMGFYQGRHAWEVFWQGPLGTVAVVGIATKDA-------LLQSHGYLALIGSDSESW 169
           V G   F  GRH WEV        V  VG+  +         L   HG+L +   + + +
Sbjct: 54  VLGTPRFTSGRHYWEVDVGT--SQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVF 111

Query: 170 GWN 172
             +
Sbjct: 112 AAS 114


>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
           {Escherichia coli [TaxId: 562]}
          Length = 455

 Score = 25.2 bits (54), Expect = 9.9
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 154 QSHGYLALIGSDSESWGWNIVDNRILHNGESQGS--YPQLNNPPKWEKESGLSWTVMTAL 211
               +L+    D   +         L +  + GS   PQ  NP   E   G    V  AL
Sbjct: 242 IGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGAL 301

Query: 212 YPLRRTMSSL-GWHSEDCQ 229
             +  T+  L   +++D Q
Sbjct: 302 TGMMMTLKGLPLAYNKDMQ 320


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.445 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,095,490
Number of extensions: 49084
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 18
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)