BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4215
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 34/46 (73%)
Query: 33 GVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
GV SGHYTAYA+HE +W+HF+DSTV D + K K YILFYV R
Sbjct: 466 GVGSGHYTAYAVHEGRWFHFNDSTVTVTDEETVGKAKAYILFYVER 511
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 33 GVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYV 76
GV SGHYTAYA HE +W+HF+DSTV D + K K YILFYV
Sbjct: 466 GVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYILFYV 509
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 33 GVHSGHYTAYAIHE--AQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVT 90
G+ GHYT +A ++ QW +FDD++V PV+ ++ Y+LFY R+ +V ++ S +
Sbjct: 842 GMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQ--DVGRRQSQTS 899
Query: 91 SSMVPTRIPTQST 103
SS P + ST
Sbjct: 900 SSDTPASPVSSST 912
>sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana
GN=UBP9 PE=2 SV=1
Length = 910
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 38 HYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTSSM 93
HYTAYA I + +W+HFDDS V V+ +K Y+LFY R E + ++++ M
Sbjct: 852 HYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRVRSETETQTVEMSTDM 909
>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana
GN=UBP10 PE=2 SV=2
Length = 923
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 38 HYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTSSM 93
HYTAYA I + +W+HFDDS V V+ ++ Y+LFY R E + +++++ M
Sbjct: 853 HYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRVRSETETQTAEMSTDM 910
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 33 GVHSGHYTAYAIHE--AQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKL 86
G+ GHYT +A ++ QW +FDD++V PV+ ++ Y+LFY R+ +V ++L
Sbjct: 883 GMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQ--DVARRL 936
>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49
PE=2 SV=1
Length = 685
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 33 GVHSGHYTAYAIH-EAQWW-HFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSD 88
G SGHYTAY + E +W H +DS + + + K + YILFY RR + + KLS+
Sbjct: 607 GFGSGHYTAYCYNTEGGFWVHCNDSKLDVCSVEEVCKTQAYILFYTRRTVQGSAKLSE 664
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 36 SGHYTAYAIHEAQ--WWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTS 91
SGHY AY +E W+ FDD +V V ++ + Y+LFY + E K+ VTS
Sbjct: 626 SGHYIAYCRNELNQLWYEFDDQSVTEVSESCVQNAEAYVLFYKKSNDETQKERRKVTS 683
>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis
thaliana GN=UBP11 PE=3 SV=2
Length = 892
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 38 HYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVR 77
HYTAYA + E +W++FDDS V V+ +K Y+LFY R
Sbjct: 838 HYTAYAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVLFYQR 879
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 26/99 (26%)
Query: 7 RRYTYVNDTKNKRQ----FRFDNLLKASTIGVHSG---------------------HYTA 41
+R++Y KNK + F DNL +S I +G HYTA
Sbjct: 772 KRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTA 831
Query: 42 YAIHEA-QWWHFDDSTVMPVDIPALKKCKPYILFYVRRV 79
Y H +W+ FDDS V + +K Y+LFY R V
Sbjct: 832 YVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRLV 870
>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43
PE=1 SV=2
Length = 1123
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 34 VHSGHYTAYAIH--EAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
+ GHYTAY + + QW+ +DDSTV P+ + YILFY +R
Sbjct: 664 LQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKR 710
>sp|B4LG38|UBP36_DROVI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila virilis
GN=Usp36 PE=3 SV=1
Length = 1214
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 21 FRFDNLLKASTIGVHSGHYTAYAIHEA-QWWHFDDSTVMPVDIPALKKCKPYILFY 75
+R +++ + H GHYTA + EA +++FDDS V P+ + ++ YI+FY
Sbjct: 444 YRLVSMVTHLGVSQHCGHYTAIGLTEAGSYYNFDDSYVKPIAMQSVCNTNAYIMFY 499
>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44
PE=2 SV=3
Length = 711
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 33 GVHSGHYTAYAIHEAQ--WWHFDDSTVMPVDIPALKKCKPYILFYVRRVPE 81
G SGHYTAY + W H +DS + + ++K + YILFY +RV E
Sbjct: 630 GFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMEEVRKAQAYILFYTQRVTE 680
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana
GN=UBP16 PE=2 SV=1
Length = 1008
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 36 SGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVP 80
SGHY Y ++ +W+ DDSTV+ D+ + Y+LFY R P
Sbjct: 805 SGHYVCYIRNQNKWYKADDSTVVTSDVERILTKGAYMLFYARCTP 849
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 33 GVHSGHYTAYAIH-EAQWW-HFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSD 88
G SGHYTA+ + E +W H +DS + + + K + YILFY +RV + LSD
Sbjct: 620 GFGSGHYTAFCYNPEGGFWVHCNDSKLHSCTVEEVCKAQAYILFYTQRVTQENGHLSD 677
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 36 SGHYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTSSM 93
SGHY AY + QW+ FDD V V ++ + Y+LFY + E ++ V S+
Sbjct: 639 SGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSEEAVRERQQVV-SL 697
Query: 94 VPTRIPT 100
R P+
Sbjct: 698 AAMREPS 704
>sp|B3M3M6|UBP36_DROAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila ananassae
GN=Usp36 PE=3 SV=1
Length = 1091
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 FRFDNLLKASTIGVHSGHYTAYAIHEA-QWWHFDDSTVMPVDIPALKKCKPYILFY 75
+R +++ + H GHYTA EA +++FDDS V P+ I ++ YI+FY
Sbjct: 426 YRLVSMVTHLGVSQHCGHYTAIGSTEAGSYYNFDDSYVRPIAIQSVCNTNAYIMFY 481
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 36 SGHYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTSSM 93
SGHY AY + QW+ FDD V V ++ + Y+LFY + E ++ V S+
Sbjct: 640 SGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGYVLFYRKSSEEAVRERQQVV-SL 698
Query: 94 VPTRIPT 100
R P+
Sbjct: 699 AAMREPS 705
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 33 GVHSGHYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
G+ SGHYTA+ + +++W++FDDS + ++ +K Y+LFY R+
Sbjct: 869 GMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRRK 916
>sp|B4MLR8|UBP36_DROWI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila willistoni
GN=Usp36 PE=3 SV=1
Length = 1311
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 21 FRFDNLLKASTIGVHSGHYTAYAIHEA-QWWHFDDSTVMPVDIPALKKCKPYILFY 75
+R +L+ + H GHYTA + E+ +++FDDS V P+ + ++ YI+FY
Sbjct: 475 YRLVSLVTHLGVSQHCGHYTAIGLTESGSYYNFDDSYVRPIAMQSVCSTNSYIMFY 530
>sp|C9JJH3|U17LA_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 10 OS=Homo
sapiens GN=USP17L10 PE=3 SV=1
Length = 530
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY++Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYSSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|Q09738|UBP8_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp8 PE=3 SV=1
Length = 449
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 36 SGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
+GHY AY ++ QW+ DD+T++ V + + Y+LFY R
Sbjct: 393 TGHYIAYTYYQNQWFLLDDTTIVEVKESEVLNSQAYLLFYHER 435
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 36 SGHYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTSSM 93
SGHY AY + QW+ FDD V V ++ + Y+LFY + E ++ V S+
Sbjct: 643 SGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNVEAYVLFYRKSSEEAMRERQQVV-SL 701
Query: 94 VPTRIPT 100
R P+
Sbjct: 702 AAMREPS 708
>sp|B4IXE0|UBP36_DROGR Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila grimshawi
GN=Usp36 PE=3 SV=1
Length = 1240
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 FRFDNLLKASTIGVHSGHYTAYAIHE-AQWWHFDDSTVMPVDIPALKKCKPYILFY 75
+R +++ + H GHYTA + E +++FDDS V P+ + ++ YI+FY
Sbjct: 454 YRLVSMVTHLGVSQHCGHYTAIGLTETGSYYNFDDSCVRPIAMQSVCNTNAYIMFY 509
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 36 SGHYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTSSM 93
SGHY AY + QW+ FDD V V ++ + Y+LFY + E ++ V S+
Sbjct: 641 SGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGYVLFYRKSSEEAMRERQQVV-SL 699
Query: 94 VPTRIPT 100
R P+
Sbjct: 700 AAMREPS 706
>sp|B4KXJ5|UBP36_DROMO Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila mojavensis
GN=Usp36 PE=3 SV=1
Length = 1185
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 21 FRFDNLLKASTIGVHSGHYTAYAIHEA-QWWHFDDSTVMPVDIPALKKCKPYILFY 75
+R +++ + H GHYTA + E+ +++FDDS V P+ + ++ YI+FY
Sbjct: 451 YRLVSMVTHLGVSQHCGHYTAIGLTESGSYYNFDDSYVRPIAMQSVCNTNAYIMFY 506
>sp|C9JLJ4|U17LD_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 13 OS=Homo
sapiens GN=USP17L13 PE=2 SV=1
Length = 530
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTAASITSVLSQQAYVLFYIQK 375
>sp|Q9FPS7|UBP20_ARATH Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana
GN=UBP20 PE=2 SV=1
Length = 695
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 34 VHSGHYTAYAIHEAQ-WWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTSS 92
V GHY++Y + W HFDDS V +D + YILFY R E T+ S V
Sbjct: 431 VAYGHYSSYVRSAPKIWHHFDDSKVTRIDEDMVLSQDSYILFYAR---EGTRWFSSVYEE 487
Query: 93 MVP 95
M P
Sbjct: 488 MQP 490
>sp|D6RBQ6|U17LH_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 17 OS=Homo
sapiens GN=USP17L17 PE=3 SV=1
Length = 530
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTAASITSVLSQQAYVLFYIQK 375
>sp|Q2LZB1|UBP36_DROPS Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila
pseudoobscura pseudoobscura GN=Usp36 PE=3 SV=2
Length = 1059
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 21 FRFDNLLKASTIGVHSGHYTAYAIHEA-QWWHFDDSTVMPVDIPALKKCKPYILFYVRRV 79
+R +++ + H GHYTA + E+ +++FDDS V P+ + ++ YI+FY +
Sbjct: 421 YRLVSMVTHLGVSQHCGHYTAIGMTESGSYYNFDDSYVRPIAMQSVCNTNAYIMFYELDL 480
Query: 80 PEVT 83
+ T
Sbjct: 481 SQTT 484
>sp|B1WBD7|UBP20_XENLA Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus laevis GN=usp20
PE=2 SV=1
Length = 840
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 36 SGHYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTS 91
SGHY +Y + QW+ FDD V V ++ + Y+LFY + E ++ V S
Sbjct: 567 SGHYISYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSEEAERERQKVVS 624
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 36 SGHYTAYAIHEAQ--WWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTK---KLSDVT 90
SGHY AY + W+ FDD +V V ++ + Y+LFY + E K ++S++
Sbjct: 638 SGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKERRRISNLL 697
Query: 91 SSMVPT 96
+ M P+
Sbjct: 698 NIMEPS 703
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 36 SGHYTAYAIHEAQ--WWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTK---KLSDVT 90
SGHY AY + W+ FDD +V V ++ + Y+LFY + E K ++S++
Sbjct: 671 SGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKERRRISNLL 730
Query: 91 SSMVPT 96
+ M P+
Sbjct: 731 NIMEPS 736
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 37 GHYTAYAIHE--AQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVT 90
GHYTAYA + +W++FDDS+V + Y+LFY RR E S V+
Sbjct: 878 GHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRRDDECPSTSSPVS 933
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 36 SGHYTAYA--IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLSDVTS 91
SGHY +Y + QW+ FDD V V ++ + Y+LFY + E ++ V S
Sbjct: 611 SGHYISYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSEEAERERQKVVS 668
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 36 SGHYTAYAIHEAQ--WWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTK---KLSDVT 90
SGHY AY + W+ FDD +V V ++ + Y+LFY + E K ++S++
Sbjct: 641 SGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKERRRISNLL 700
Query: 91 SSMVPT 96
+ M P+
Sbjct: 701 NIMEPS 706
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 16 KNKRQFRFDNLLKASTIGVHS-GHYTAYAIHE--AQWWHFDDSTVMPVDIPALKKCKPYI 72
++ R + +D + ++ G GHYTAYA + +W++FDDS+V + Y+
Sbjct: 857 RSARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYV 916
Query: 73 LFYVRRVPEVTKKLS 87
LFY RR E + S
Sbjct: 917 LFYQRRDDECSSTSS 931
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 36 SGHYTAYAIHEAQ--WWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTK---KLSDVT 90
SGHY AY + W+ FDD +V V ++ + Y+LFY + E K ++S++
Sbjct: 639 SGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKERRRISNLL 698
Query: 91 SSMVPT 96
+ M P+
Sbjct: 699 NIMEPS 704
>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44
PE=1 SV=2
Length = 712
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 33 GVHSGHYTAYAIHEAQ--WWHFDDSTVMPVDIPALKKCKPYILFYVRRVPE 81
G SGHYTAY + W H +DS + + + K + YILFY +RV E
Sbjct: 631 GFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMDEVCKAQAYILFYTQRVTE 681
>sp|Q6QN14|U17L6_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 6 OS=Homo
sapiens GN=USP17L6 PE=1 SV=2
Length = 398
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|Q6R6M4|U17L2_HUMAN Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17L2
PE=1 SV=2
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HDGHYFSYVKAQEGQWYKMDDAKVTACSITSVLSQQAYVLFYIQK 375
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 37 GHYTAYAIHE--AQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTK 84
GHYTAYA ++ +W++FDDS V + Y+LFY RR E K
Sbjct: 880 GHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYK 929
>sp|C9JPN9|UL17C_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 12 OS=Homo
sapiens GN=USP17L12 PE=3 SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|D6R901|U17LL_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 21 OS=Homo
sapiens GN=USP17L21 PE=3 SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|D6R9N7|U17LI_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 18 OS=Homo
sapiens GN=USP17L18 PE=3 SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|C9J2P7|U17LF_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 15 OS=Homo
sapiens GN=USP17L15 PE=3 SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|D6RA61|U17LM_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 22 OS=Homo
sapiens GN=USP17L22 PE=3 SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|D6RJB6|U17LK_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 20 OS=Homo
sapiens GN=USP17L20 PE=3 SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|D6RCP7|U17LJ_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 19 OS=Homo
sapiens GN=USP17L19 PE=3 SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
>sp|C9JVI0|U17LB_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 11 OS=Homo
sapiens GN=USP17L11 PE=3 SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 35 HSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
H+GHY +Y E QW+ DD+ V I ++ + Y+LFY+++
Sbjct: 331 HNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQK 375
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,851,968
Number of Sequences: 539616
Number of extensions: 1367487
Number of successful extensions: 2977
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 2809
Number of HSP's gapped (non-prelim): 156
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)