Query psy4215
Match_columns 103
No_of_seqs 119 out of 1057
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 19:47:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nhe_A Ubiquitin carboxyl-term 99.9 8.4E-22 2.9E-26 146.5 10.3 70 11-81 274-345 (348)
2 3i3t_A Ubiquitin carboxyl-term 99.9 4.6E-22 1.6E-26 148.3 7.3 70 11-81 284-353 (355)
3 2y6e_A Ubiquitin carboxyl-term 99.9 2.9E-21 9.9E-26 146.2 10.0 65 17-82 296-362 (367)
4 2ayn_A Ubiquitin carboxyl-term 99.8 7E-21 2.4E-25 145.1 7.6 65 17-81 324-396 (404)
5 1vjv_A Ubiquitin carboxyl-term 99.8 1.3E-20 4.6E-25 144.7 8.2 63 17-79 342-414 (415)
6 2gfo_A Ubiquitin carboxyl-term 99.8 2.9E-20 9.8E-25 143.1 9.1 61 18-79 334-396 (396)
7 1nb8_A Ubiquitin carboxyl-term 99.8 5E-21 1.7E-25 145.1 4.6 65 16-81 236-317 (353)
8 3mhs_A Ubiquitin carboxyl-term 99.8 9.5E-20 3.3E-24 142.3 8.5 63 17-80 412-475 (476)
9 2f1z_A Ubiquitin carboxyl-term 99.8 7.6E-20 2.6E-24 145.0 6.9 65 16-81 405-486 (522)
10 3ihp_A Ubiquitin carboxyl-term 99.7 7.6E-18 2.6E-22 141.1 9.3 62 16-79 792-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 98.4 1.6E-07 5.4E-12 72.8 4.3 32 18-54 274-308 (374)
12 3mp2_A Non-structural protein 78.3 2.9 9.8E-05 29.9 4.3 34 25-61 162-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 69.1 7.9 0.00027 29.1 5.0 34 27-62 263-296 (315)
14 1qmy_A Protease, leader protea 56.2 14 0.00049 25.0 3.9 52 21-81 107-158 (167)
15 2ww6_A Fibritin, T4 fibritin; 50.7 8.4 0.00029 18.6 1.5 14 41-54 12-25 (27)
16 3o65_A Putative ataxin-3-like 46.0 22 0.00077 24.8 3.7 55 23-82 110-172 (191)
17 3rii_A Ubiquitin carboxyl-term 35.9 27 0.00092 24.9 2.9 26 36-61 167-192 (233)
18 4dm9_A Ubiquitin carboxyl-term 34.9 29 0.00098 24.7 2.9 27 35-61 163-189 (228)
19 4ekf_A Adenain; alpha and beta 34.2 48 0.0016 23.4 3.8 31 24-54 40-72 (204)
20 1cmx_A Protein (ubiquitin YUH1 33.0 40 0.0014 24.1 3.4 27 35-61 163-190 (235)
21 1xd3_A Ubiquitin carboxyl-term 32.4 33 0.0011 24.4 2.9 27 35-61 166-192 (230)
22 2wdt_A Ubiquitin carboxyl-term 32.4 34 0.0012 24.3 3.0 26 36-61 162-187 (232)
23 1flt_X FLT-1, VGR1, FMS-like t 28.6 64 0.0022 19.5 3.4 30 24-53 59-88 (95)
24 2oxg_Z SOXZ protein; immunoglo 28.3 64 0.0022 20.1 3.4 57 18-79 17-82 (108)
25 2jq5_A SEC-C motif; structural 26.9 34 0.0012 22.2 2.0 14 42-55 112-125 (128)
26 3ihr_A Ubiquitin carboxyl-term 26.3 43 0.0015 25.2 2.7 26 36-61 162-187 (328)
27 3ie4_A GRAM-negative binding p 25.8 1E+02 0.0034 19.3 4.0 37 20-56 25-66 (107)
28 1pfs_A PF3 SSDBP, PF3 single-s 23.8 78 0.0027 18.8 3.0 24 34-57 48-75 (78)
29 1v8h_A Sulfur oxidation protei 21.7 1.5E+02 0.0051 18.3 6.9 57 18-79 16-81 (107)
No 1
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.86 E-value=8.4e-22 Score=146.49 Aligned_cols=70 Identities=27% Similarity=0.600 Sum_probs=62.6
Q ss_pred eeeCCCCCcceEEeEEEEEeeCCCCCceEEEEEEc--CCeEEEEcCCeeeEeCcccccCCCcEEEEEEecCCc
Q psy4215 11 YVNDTKNKRQFRFDNLLKASTIGVHSGHYTAYAIH--EAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPE 81 (103)
Q Consensus 11 ~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~~~~--~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~~~ 81 (103)
|+........|+|+|||+|.| +.++|||++|+|. ++.|++|||+.|++++.++|...+||||||+|++.+
T Consensus 274 ~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 274 FASENTNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp GBCTTCCCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC--
T ss_pred hcCCCCCCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCC
Confidence 445556678899999999999 7899999999998 789999999999999999999999999999999865
No 2
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.86 E-value=4.6e-22 Score=148.25 Aligned_cols=70 Identities=29% Similarity=0.511 Sum_probs=59.4
Q ss_pred eeeCCCCCcceEEeEEEEEeeCCCCCceEEEEEEcCCeEEEEcCCeeeEeCcccccCCCcEEEEEEecCCc
Q psy4215 11 YVNDTKNKRQFRFDNLLKASTIGVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPE 81 (103)
Q Consensus 11 ~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~~~~~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~~~ 81 (103)
|+....+...|+|+|||+|.| ++++|||++|+|..+.|++|||+.|+++++++|...+||||||+|.+.+
T Consensus 284 ~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 284 FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp GBC----CCEEEEEEEEEEEE-ETTEEEEEEEEEETTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred hccCCCCCcceEEEEEEEecC-CCCCCeEEEEEEcCCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCC
Confidence 344555667899999999999 8999999999999889999999999999999999999999999998764
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=146.20 Aligned_cols=65 Identities=31% Similarity=0.518 Sum_probs=59.5
Q ss_pred CCcceEEeEEEEEeeCCCCCceEEEEEEc--CCeEEEEcCCeeeEeCcccccCCCcEEEEEEecCCcc
Q psy4215 17 NKRQFRFDNLLKASTIGVHSGHYTAYAIH--EAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEV 82 (103)
Q Consensus 17 ~~~~Y~L~avv~H~G~~~~~GHY~~~~~~--~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~~~~ 82 (103)
....|+|+|||+|.| ++++|||++|+|+ ++.|++|||+.|++++.++|...+||||||+|++.+.
T Consensus 296 ~~~~Y~L~avv~H~G-~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 362 (367)
T 2y6e_A 296 RPYVYDLIAVSNHYG-AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEF 362 (367)
T ss_dssp CCCEEEEEEEEEEEC-SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred CCceEEEEEEeecCC-CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence 457899999999999 6899999999998 6899999999999999999999999999999998763
No 4
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.83 E-value=7e-21 Score=145.10 Aligned_cols=65 Identities=26% Similarity=0.477 Sum_probs=58.0
Q ss_pred CCcceEEeEEEEEeeCCCCCceEEEEEEc-CCeEEEEcCCeeeEeCcccccCCC-------cEEEEEEecCCc
Q psy4215 17 NKRQFRFDNLLKASTIGVHSGHYTAYAIH-EAQWWHFDDSTVMPVDIPALKKCK-------PYILFYVRRVPE 81 (103)
Q Consensus 17 ~~~~Y~L~avv~H~G~~~~~GHY~~~~~~-~~~W~~~dD~~V~~~~~~~v~~~~-------aYiLfY~r~~~~ 81 (103)
....|+|+|||+|.|.++++|||++|+|. ++.|++|||+.|++++.++|.... ||||||+|++..
T Consensus 324 ~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~ 396 (404)
T 2ayn_A 324 NCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVE 396 (404)
T ss_dssp CCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC---
T ss_pred CCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCCC
Confidence 45789999999999977999999999999 999999999999999999998766 999999999865
No 5
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.82 E-value=1.3e-20 Score=144.74 Aligned_cols=63 Identities=22% Similarity=0.430 Sum_probs=58.3
Q ss_pred CCcceEEeEEEEEeeCCCCCceEEEEEEc---CCeEEEEcCCeeeEeCcccccCCC-------cEEEEEEecC
Q psy4215 17 NKRQFRFDNLLKASTIGVHSGHYTAYAIH---EAQWWHFDDSTVMPVDIPALKKCK-------PYILFYVRRV 79 (103)
Q Consensus 17 ~~~~Y~L~avv~H~G~~~~~GHY~~~~~~---~~~W~~~dD~~V~~~~~~~v~~~~-------aYiLfY~r~~ 79 (103)
....|+|+|||+|.|.++++|||++|+|. ++.||+|||+.|++++.++|.... ||||||+|++
T Consensus 342 ~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 342 PSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp SSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 45789999999999977999999999998 889999999999999999998766 9999999976
No 6
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.82 E-value=2.9e-20 Score=143.12 Aligned_cols=61 Identities=30% Similarity=0.657 Sum_probs=57.3
Q ss_pred CcceEEeEEEEEeeCCCCCceEEEEEEc--CCeEEEEcCCeeeEeCcccccCCCcEEEEEEecC
Q psy4215 18 KRQFRFDNLLKASTIGVHSGHYTAYAIH--EAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRV 79 (103)
Q Consensus 18 ~~~Y~L~avv~H~G~~~~~GHY~~~~~~--~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~ 79 (103)
...|+|+|||+|.| ++++|||++|+|+ ++.|++|||+.|++++.++|...+||||||+|++
T Consensus 334 ~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 334 LKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp CCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred CceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 57899999999999 8999999999998 6899999999999999999999999999999874
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.82 E-value=5e-21 Score=145.14 Aligned_cols=65 Identities=26% Similarity=0.514 Sum_probs=57.8
Q ss_pred CCCcceEEeEEEEEeeCCCCCceEEEEEEc--CCeEEEEcCCeeeEeCcccccC---------------CCcEEEEEEec
Q psy4215 16 KNKRQFRFDNLLKASTIGVHSGHYTAYAIH--EAQWWHFDDSTVMPVDIPALKK---------------CKPYILFYVRR 78 (103)
Q Consensus 16 ~~~~~Y~L~avv~H~G~~~~~GHY~~~~~~--~~~W~~~dD~~V~~~~~~~v~~---------------~~aYiLfY~r~ 78 (103)
.....|+|+|||+|.| ++++|||++|+|+ ++.|++|||+.|++++.++|.. .+||||||+|+
T Consensus 236 ~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~ 314 (353)
T 1nb8_A 236 KDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314 (353)
T ss_dssp TSCCEEEEEEEEEEES-STTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEET
T ss_pred CCCceEEEEEEEEEeC-CCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEEC
Confidence 4567899999999999 6899999999996 8899999999999999888753 56999999998
Q ss_pred CCc
Q psy4215 79 VPE 81 (103)
Q Consensus 79 ~~~ 81 (103)
+..
T Consensus 315 ~~~ 317 (353)
T 1nb8_A 315 SKL 317 (353)
T ss_dssp TTH
T ss_pred chh
Confidence 864
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.80 E-value=9.5e-20 Score=142.26 Aligned_cols=63 Identities=27% Similarity=0.527 Sum_probs=58.7
Q ss_pred CCcceEEeEEEEEeeCCCCCceEEEEEEc-CCeEEEEcCCeeeEeCcccccCCCcEEEEEEecCC
Q psy4215 17 NKRQFRFDNLLKASTIGVHSGHYTAYAIH-EAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVP 80 (103)
Q Consensus 17 ~~~~Y~L~avv~H~G~~~~~GHY~~~~~~-~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~~ 80 (103)
....|+|+|||+|.| ++++|||++|+|. +++|++|||+.|+++++++|...+||||||+|++.
T Consensus 412 ~~~~Y~L~avv~H~G-~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 412 PDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp CCEEEEEEEEEEEEE-CSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEeCC-CCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence 346799999999999 7999999999998 88999999999999999999999999999999863
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.79 E-value=7.6e-20 Score=144.99 Aligned_cols=65 Identities=26% Similarity=0.514 Sum_probs=57.9
Q ss_pred CCCcceEEeEEEEEeeCCCCCceEEEEEEc--CCeEEEEcCCeeeEeCcccccC---------------CCcEEEEEEec
Q psy4215 16 KNKRQFRFDNLLKASTIGVHSGHYTAYAIH--EAQWWHFDDSTVMPVDIPALKK---------------CKPYILFYVRR 78 (103)
Q Consensus 16 ~~~~~Y~L~avv~H~G~~~~~GHY~~~~~~--~~~W~~~dD~~V~~~~~~~v~~---------------~~aYiLfY~r~ 78 (103)
..+..|+|+|||+|.| ++++|||++|+|+ ++.|++|||+.|++++.++|.. .+||||||+|+
T Consensus 405 ~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~ 483 (522)
T 2f1z_A 405 KDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 483 (522)
T ss_dssp TSCCEEEEEEEEEEEC-SSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEET
T ss_pred CCCcEEEEEEEEEecc-cCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEEC
Confidence 4467899999999999 6899999999996 7899999999999999888763 46999999998
Q ss_pred CCc
Q psy4215 79 VPE 81 (103)
Q Consensus 79 ~~~ 81 (103)
+..
T Consensus 484 ~~~ 486 (522)
T 2f1z_A 484 SKL 486 (522)
T ss_dssp TSH
T ss_pred Cch
Confidence 864
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.6e-18 Score=141.12 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=55.7
Q ss_pred CCCcceEEeEEEEEeeCCCCCceEEEEEEcCCeEEEEcCCeeeEeCcccccCCCcEEEEEEecC
Q psy4215 16 KNKRQFRFDNLLKASTIGVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRV 79 (103)
Q Consensus 16 ~~~~~Y~L~avv~H~G~~~~~GHY~~~~~~~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~ 79 (103)
.++..|+|+|||+|.|.+.++|||++|+|.+++|++|||+.|+++ ++.....||||||+|.+
T Consensus 792 ~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 792 DGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp CCCSEEEEEEEEEEESSCSSCCEEEEEEEETTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred CCCceEEEEEEEEeecCCCCCcCeEEEEEeCCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 345689999999999988899999999999999999999999997 44567889999999976
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=98.42 E-value=1.6e-07 Score=72.79 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=28.4
Q ss_pred CcceEEeEEEEEeeCCCCCceEEEEEEc---CCeEEEEcC
Q psy4215 18 KRQFRFDNLLKASTIGVHSGHYTAYAIH---EAQWWHFDD 54 (103)
Q Consensus 18 ~~~Y~L~avv~H~G~~~~~GHY~~~~~~---~~~W~~~dD 54 (103)
...|+|+|||+ +++|||++|||. ++.|+.||-
T Consensus 274 sg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 274 CQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp -CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred ceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 36899999999 778999999997 789999985
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=78.33 E-value=2.9 Score=29.85 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=27.1
Q ss_pred EEEEEeeCCCCCceEEEEEEcCCeEEEEcCCeeeEeC
Q psy4215 25 NLLKASTIGVHSGHYTAYAIHEAQWWHFDDSTVMPVD 61 (103)
Q Consensus 25 avv~H~G~~~~~GHY~~~~~~~~~W~~~dD~~V~~~~ 61 (103)
+-++-.| +.++|||+.+....+ +.+|-..+.+++
T Consensus 162 ~~~vF~G-~~~~GHY~~~~~~~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTG-TTQNGHYMVDDIEHG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEES-CTTTCEEEEEETTTT--EEEETTEEECCC
T ss_pred eEEEEEc-CCCCceEEEEecccc--eEEeCCceeEcc
Confidence 5556688 789999999987654 888888888875
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=69.13 E-value=7.9 Score=29.12 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=26.8
Q ss_pred EEEeeCCCCCceEEEEEEcCCeEEEEcCCeeeEeCc
Q psy4215 27 LKASTIGVHSGHYTAYAIHEAQWWHFDDSTVMPVDI 62 (103)
Q Consensus 27 v~H~G~~~~~GHY~~~~~~~~~W~~~dD~~V~~~~~ 62 (103)
.+-.| +.++|||+.+...... +.+|-..+.+++.
T Consensus 263 ~vF~G-~~~~GHYt~~~~~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 263 NEYTG-NYQCGHYTHITAKETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp EEEES-CGGGCEEEEEEESSSE-EEEETTEEEEESE
T ss_pred EEEEC-CCCccceEEEecCCce-eEEeCCcceeccc
Confidence 33488 7789999998876544 7999999988874
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=56.15 E-value=14 Score=25.04 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=35.7
Q ss_pred eEEeEEEEEeeCCCCCceEEEEEEcCCeEEEEcCCeeeEeCcccccCCCcEEEEEEecCCc
Q psy4215 21 FRFDNLLKASTIGVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPE 81 (103)
Q Consensus 21 Y~L~avv~H~G~~~~~GHY~~~~~~~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~~~ 81 (103)
-++.|-|.-.| .+|-+.++.....||.+||+.+.+..++. +=+|+|.--+.+
T Consensus 107 aDfhAgIflkg----~eHAVFa~~TS~GWyaiDDe~fypwtPdp-----sdVLVfvPyDqE 158 (167)
T 1qmy_A 107 ADFHAGIFLKG----QEHAVFACVTSNGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQE 158 (167)
T ss_dssp GGEEEEEEEET----TTEEEEEECCTTSSEEEETTEEEECCCCG-----GGEEEEEECC--
T ss_pred hhhhhheeecC----CCceEEEEEccCceEEecccccccCCCCh-----hhEEEEccCCcc
Confidence 34555555555 48998888888889999999999976633 236666655544
No 15
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=50.74 E-value=8.4 Score=18.62 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=11.1
Q ss_pred EEEEcCCeEEEEcC
Q psy4215 41 AYAIHEAQWWHFDD 54 (103)
Q Consensus 41 ~~~~~~~~W~~~dD 54 (103)
+|+|.+|.|....+
T Consensus 12 ~Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRKFGEWVLLST 25 (27)
T ss_dssp EEEEETTEEEEGGG
T ss_pred eeEEEcCeEEEccc
Confidence 58899999987654
No 16
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=46.00 E-value=22 Score=24.78 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=38.3
Q ss_pred EeEEEEEeeCCCCCceEEEEEEcCCeEEEEcCCeeeE--eCccc------ccCCCcEEEEEEecCCcc
Q psy4215 23 FDNLLKASTIGVHSGHYTAYAIHEAQWWHFDDSTVMP--VDIPA------LKKCKPYILFYVRRVPEV 82 (103)
Q Consensus 23 L~avv~H~G~~~~~GHY~~~~~~~~~W~~~dD~~V~~--~~~~~------v~~~~aYiLfY~r~~~~~ 82 (103)
..|+|++.. -|+++..|-++.||-+|-..-.+ ++... -...+.|-+|-++-+.+.
T Consensus 110 ~~~FI~N~~-----~HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~lP~ 172 (191)
T 3o65_A 110 ERSFICNYK-----QHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPD 172 (191)
T ss_dssp CCEEEEEES-----SCEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESCCCC
T ss_pred hhhhhhccc-----cceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 468888874 69999888899999999865332 22111 113579999999876653
No 17
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=35.94 E-value=27 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=21.5
Q ss_pred CceEEEEEEcCCeEEEEcCCeeeEeC
Q psy4215 36 SGHYTAYAIHEAQWWHFDDSTVMPVD 61 (103)
Q Consensus 36 ~GHY~~~~~~~~~W~~~dD~~V~~~~ 61 (103)
.=||+|||..+|.-|++|-.+-.+++
T Consensus 167 ~~HFIafV~~dG~LyELDG~k~gPi~ 192 (233)
T 3rii_A 167 AFHFVSYVPVNGRLYELDGLREGPID 192 (233)
T ss_dssp GSEEEEEEEETTEEEEECTTSSSCEE
T ss_pred ceeEEEEEEeCCeEEEcCCCCCCCcc
Confidence 46999999999999999988755543
No 18
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=34.86 E-value=29 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=21.9
Q ss_pred CCceEEEEEEcCCeEEEEcCCeeeEeC
Q psy4215 35 HSGHYTAYAIHEAQWWHFDDSTVMPVD 61 (103)
Q Consensus 35 ~~GHY~~~~~~~~~W~~~dD~~V~~~~ 61 (103)
..=||+|||..+|.-|++|-.+-.+++
T Consensus 163 ~~~HFIafV~~dG~LyELDG~k~gPi~ 189 (228)
T 4dm9_A 163 VNFHFILFNNVDGHLYELDGRMPFPVN 189 (228)
T ss_dssp CCEEEEEEEEETTEEEEECTTSSSCEE
T ss_pred CCceEEEEEEeCCeEEEcCCCCCCCce
Confidence 456999999999999999998755443
No 19
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=34.19 E-value=48 Score=23.37 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCCCceEEEEEEc--CCeEEEEcC
Q psy4215 24 DNLLKASTIGVHSGHYTAYAIH--EAQWWHFDD 54 (103)
Q Consensus 24 ~avv~H~G~~~~~GHY~~~~~~--~~~W~~~dD 54 (103)
.|||+--|...++-|++|++-+ ....|.||.
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 4666666656677899999988 778999886
No 20
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=33.02 E-value=40 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCceEEEEEEcCCeEEEEcCCe-eeEeC
Q psy4215 35 HSGHYTAYAIHEAQWWHFDDST-VMPVD 61 (103)
Q Consensus 35 ~~GHY~~~~~~~~~W~~~dD~~-V~~~~ 61 (103)
..-||++||..+|.-|++|-.+ -.+++
T Consensus 163 ~~~HFI~fV~~~G~LyELDG~k~~gPi~ 190 (235)
T 1cmx_A 163 TNLHYITYVEENGGIFELDGRNLSGPLY 190 (235)
T ss_dssp CSEEEEEEEECSSEEEEECTTCTTCCEE
T ss_pred CCeEEEEEEeeCCEEEEecCCCCCCCeE
Confidence 4579999999999999999877 44443
No 21
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=32.43 E-value=33 Score=24.37 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=22.0
Q ss_pred CCceEEEEEEcCCeEEEEcCCeeeEeC
Q psy4215 35 HSGHYTAYAIHEAQWWHFDDSTVMPVD 61 (103)
Q Consensus 35 ~~GHY~~~~~~~~~W~~~dD~~V~~~~ 61 (103)
..=||++||..+|.-|++|-.+-.+++
T Consensus 166 ~~~HFI~fV~~~G~LyELDG~k~gPi~ 192 (230)
T 1xd3_A 166 VDLHFIALVHVDGHLYELDGRKPFPIN 192 (230)
T ss_dssp CCEEEEEEEEETTEEEEECTTSSSCEE
T ss_pred cCeEEEEEEeeCCEEEEccCCCCCCee
Confidence 357999999999999999987755554
No 22
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=32.38 E-value=34 Score=24.35 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=21.4
Q ss_pred CceEEEEEEcCCeEEEEcCCeeeEeC
Q psy4215 36 SGHYTAYAIHEAQWWHFDDSTVMPVD 61 (103)
Q Consensus 36 ~GHY~~~~~~~~~W~~~dD~~V~~~~ 61 (103)
.=||++||..+|.-|++|-.+-.+++
T Consensus 162 ~~HFI~fV~~~G~LyELDG~k~gPi~ 187 (232)
T 2wdt_A 162 DTHFIVFVQIEGKIIELDGRKDHPTV 187 (232)
T ss_dssp CEEEEEEEESSSEEEEECTTSSSCEE
T ss_pred CeEEEEEEEeCCEEEEccCCCCCCcc
Confidence 47999999999999999987755554
No 23
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=28.59 E-value=64 Score=19.50 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=22.6
Q ss_pred eEEEEEeeCCCCCceEEEEEEcCCeEEEEc
Q psy4215 24 DNLLKASTIGVHSGHYTAYAIHEAQWWHFD 53 (103)
Q Consensus 24 ~avv~H~G~~~~~GHY~~~~~~~~~W~~~d 53 (103)
.|+++|.-.-...|.|.|-++.+|.+++=+
T Consensus 59 ~Gf~I~~~~~~~~g~y~C~a~~~g~~~~S~ 88 (95)
T 1flt_X 59 KGFIISNATYKEIGLLTCEATVNGHLYKTN 88 (95)
T ss_dssp TEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CCEEEeCCCcccCcEEEEEEEECCEEEEEE
Confidence 367777765567899999998888777644
No 24
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=28.27 E-value=64 Score=20.09 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=42.4
Q ss_pred CcceEEeEEEEEeeCC--CC-------CceEEEEEEcCCeEEEEcCCeeeEeCcccccCCCcEEEEEEecC
Q psy4215 18 KRQFRFDNLLKASTIG--VH-------SGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRV 79 (103)
Q Consensus 18 ~~~Y~L~avv~H~G~~--~~-------~GHY~~~~~~~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~ 79 (103)
....++...|.|-=.+ .. -.||+..+. ..+|+..|-.++.....+.++|+-|+-+-.
T Consensus 17 g~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~-----~~~ng~~v~~~~~~~~iS~NP~~~F~~~~~ 82 (108)
T 2oxg_Z 17 GETVTVKALISHKMESGQRKDADGKLIPRSIINRFT-----CELNGVNVVDVAIDPAVSTNPYFEFDAKVD 82 (108)
T ss_dssp TEEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE-----EEETTEEEEEEEECTTBCSSCEEEEEEEEC
T ss_pred CCCEEEEEEeECCCccccccCcCCCccchHheEEEE-----EEECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 3456777888887533 11 268877665 347999999999999999999999997753
No 25
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=26.90 E-value=34 Score=22.19 Aligned_cols=14 Identities=7% Similarity=0.534 Sum_probs=11.3
Q ss_pred EEEcCCeEEEEcCC
Q psy4215 42 YAIHEAQWWHFDDS 55 (103)
Q Consensus 42 ~~~~~~~W~~~dD~ 55 (103)
|+|.+|.|++.|-.
T Consensus 112 F~r~~g~W~YvDG~ 125 (128)
T 2jq5_A 112 FRKARGRWYFSEGE 125 (128)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEeCCE
Confidence 66779999998864
No 26
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=26.34 E-value=43 Score=25.16 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=21.3
Q ss_pred CceEEEEEEcCCeEEEEcCCeeeEeC
Q psy4215 36 SGHYTAYAIHEAQWWHFDDSTVMPVD 61 (103)
Q Consensus 36 ~GHY~~~~~~~~~W~~~dD~~V~~~~ 61 (103)
.=||+|||..+|.-|.+|-.+-.+++
T Consensus 162 ~~HFIafV~~dG~LyELDG~k~gPI~ 187 (328)
T 3ihr_A 162 AFHFVSYVPVNGRLYELDGLREGPID 187 (328)
T ss_dssp CEEEEEEEEETTEEEEEETTSSSCEE
T ss_pred ceeEEEEEeeCCEEEEcCCCCCCCcc
Confidence 46999999999999999988755543
No 27
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=25.81 E-value=1e+02 Score=19.28 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=25.5
Q ss_pred ceEEeEE---EEEeeCCCCCceEEEEEEc--CCeEEEEcCCe
Q psy4215 20 QFRFDNL---LKASTIGVHSGHYTAYAIH--EAQWWHFDDST 56 (103)
Q Consensus 20 ~Y~L~av---v~H~G~~~~~GHY~~~~~~--~~~W~~~dD~~ 56 (103)
...|+|+ |...-.+...|++...+.. +|.|..-|+..
T Consensus 25 gi~lf~fh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d~~~ 66 (107)
T 3ie4_A 25 GITLFAFHGKLNEEMEGLEAGTWARDIVKAKNGRWTFRDRIT 66 (107)
T ss_dssp TEEEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEESSC
T ss_pred CCEEEEEEEEeCCCCcCccccEeEEeEeEecCCEEEEECCCc
Confidence 5566665 4444334567999888866 89999887754
No 28
>1pfs_A PF3 SSDBP, PF3 single-stranded DNA binding protein; viral, bacteriophage PF3; NMR {Pseudomonas phage PF3} SCOP: b.40.4.7
Probab=23.78 E-value=78 Score=18.82 Aligned_cols=24 Identities=17% Similarity=0.136 Sum_probs=17.7
Q ss_pred CCCceEEEEEEc----CCeEEEEcCCee
Q psy4215 34 VHSGHYTAYAIH----EAQWWHFDDSTV 57 (103)
Q Consensus 34 ~~~GHY~~~~~~----~~~W~~~dD~~V 57 (103)
+..|||-+-++. +.-|+.||-..-
T Consensus 48 ~paG~Ye~d~~~~V~dgRlef~~Dprq~ 75 (78)
T 1pfs_A 48 IPAGSYQVPYRINVNNGRPELAFDFKAM 75 (78)
T ss_dssp CCSEEEEEEEEEEEETTEEEEEECTTSC
T ss_pred CCCCceecceEeeecCCcEEEEeChHHh
Confidence 468999887654 568999987543
No 29
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=21.71 E-value=1.5e+02 Score=18.25 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=43.0
Q ss_pred CcceEEeEEEEEeeCC-C--------CCceEEEEEEcCCeEEEEcCCeeeEeCcccccCCCcEEEEEEecC
Q psy4215 18 KRQFRFDNLLKASTIG-V--------HSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRV 79 (103)
Q Consensus 18 ~~~Y~L~avv~H~G~~-~--------~~GHY~~~~~~~~~W~~~dD~~V~~~~~~~v~~~~aYiLfY~r~~ 79 (103)
....++...|.|--.+ . --.||+..+. ..+|+..|-.++.....+.++|+-|+-+-.
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~-----~~~ng~~v~~~~~~~~iS~nP~~~F~~~~~ 81 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVE-----VYFEGEKVAEARPGPSTSANPLYAFKFKAE 81 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE-----EEETTEEEEEECCCSSCCSSCEEEEEEECC
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEE-----EEECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 4457788888887533 1 1278877665 347999999999999999999999997754
Done!