RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4215
(103 letters)
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 55.2 bits (133), Expect = 2e-10
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 34 VHSGHYTAYAIHEA--QWWHFDDSTVMPVDI-----PALKKCKPYILFYV 76
SGHY AY + +W+ F+D V V YILFY
Sbjct: 206 ADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 52.3 bits (126), Expect = 1e-09
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 36 SGHYTAYAIHEA--QWWHFDDSTVMPVDIPALKKCKPYILFY 75
GHYTAY + W+ FDDS V V ++ YILFY
Sbjct: 188 GGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFY 229
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 51.6 bits (124), Expect = 4e-09
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 34 VHSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYV 76
+ +GHYTAY + QW+ FDD+ + V + K + Y+LFY
Sbjct: 285 LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 49.7 bits (119), Expect = 2e-08
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 30 STIGVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIPALKKCKPYILFY 75
S + GHY AY +W FDD V V + + YILFY
Sbjct: 266 SGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEEEVLRSSAYILFY 313
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 48.0 bits (115), Expect = 7e-08
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 35 HSGHYTAY--AIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYV 76
HSGHY Y + + +W++ DDS V PV I + K YILFY+
Sbjct: 262 HSGHYYCYVKSSNG-KWYNMDDSKVSPVSIETVLSQKAYILFYI 304
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 45.3 bits (107), Expect = 8e-07
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 33 GVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
G+ GHYTAYA + A W+ FDDS + VD Y+LFY R+
Sbjct: 775 GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 41.6 bits (98), Expect = 1e-05
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 23/64 (35%)
Query: 35 HSGHYTAYA-----------------------IHEAQWWHFDDSTVMPVDIPALKKCKPY 71
SGHY AY QW++ DS V V + + K + Y
Sbjct: 215 RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAY 274
Query: 72 ILFY 75
+LFY
Sbjct: 275 LLFY 278
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 34 VHSGHYTAYAIHEAQWWHFDDSTVMPVD-IPALKKCKPYILFYVR 77
++ GHY + W +DDS V + YILFY R
Sbjct: 369 LNGGHYFSEVKRSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTR 413
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 37.4 bits (87), Expect = 5e-04
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 17 NKRQFRFDNLLKASTIGVHSGHYTA--YAIHEAQWWHFDDSTVMPVDIPALKK 67
+ +L + +SGHY A +W+ F+D V + LK
Sbjct: 242 GSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKL 294
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 35.4 bits (82), Expect = 0.002
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 34 VHSGHYTAY----AIHEAQWWHFDDSTVMPVDIPALKKCKPYILFY 75
VHSGHY A+ E +W F+D V+ P K YI FY
Sbjct: 265 VHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFY 310
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 35.2 bits (81), Expect = 0.002
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 19/61 (31%)
Query: 34 VHSGHYTAYA-------------IHEAQWWHFDD-----STVMPVDIPA-LKKCKPYILF 74
+ +GHY A+ + AQW FDD +IPA PY+LF
Sbjct: 180 LETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLF 239
Query: 75 Y 75
Y
Sbjct: 240 Y 240
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 34.9 bits (81), Expect = 0.003
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 24/69 (34%)
Query: 33 GVHSGHYTAY--AIHEAQWWHFDDSTVMPVDIP-ALKKC--------------------- 68
H GHY +Y + +W+ F+D V P D A ++C
Sbjct: 263 DAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTT 322
Query: 69 KPYILFYVR 77
Y+LFY R
Sbjct: 323 NAYMLFYER 331
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 31.8 bits (72), Expect = 0.038
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 15 TKNKRQ-FRFDNLLKASTIGVHSGHYTAYAIHEAQWWHFDDSTV--------MPVDIPAL 65
TK K +R ++ S + SGHYTAY +W FDDS V + P
Sbjct: 265 TKPKNDVYRLFAVVMHSGATISSGHYTAY----VRWLLFDDSEVKVTEEKDFLEALSPNT 320
Query: 66 KKC-KPYILFY 75
PY+LFY
Sbjct: 321 SSTSTPYLLFY 331
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 31.5 bits (72), Expect = 0.041
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 33 GVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKK--------CKPYILFY 75
G + GHY + W FDD TV +D A+++ Y+LFY
Sbjct: 249 GPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFY 299
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 31.2 bits (70), Expect = 0.061
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 34 VHSGHYTAYAIHEA----QWWHFDDSTVMPVDIPALKKCKPYILFYVR 77
+H+GHY + +W +D + + K YI + R
Sbjct: 701 IHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 31.1 bits (71), Expect = 0.065
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 36 SGHYTAY--AIHEAQWWHFDDSTVMPVD 61
SGHY A+ ++ +W FDD V V
Sbjct: 256 SGHYVAWVRRKNDGKWIKFDDDKVSEVT 283
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 268
Score = 26.7 bits (59), Expect = 2.5
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 48 QWWHFDDSTVMPVDIPALKKCKPYILFY 75
+W+ F+D V PV YIL Y
Sbjct: 246 RWYLFNDFLVTPVSE------LAYILLY 267
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 26.0 bits (57), Expect = 4.5
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 34 VHSGHYTAY--AIHEAQWWHFDDSTV 57
+H GHY A + +W+ FDD+ V
Sbjct: 443 LHEGHYYALLKPEKDGRWYKFDDTRV 468
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 25.9 bits (57), Expect = 4.5
Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 29/75 (38%)
Query: 30 STIGVHSGHYTAYAIH----------------------EAQWWHFDDSTVMPVDIPALKK 67
S SGHY YA W+ F+DS V +++
Sbjct: 252 SGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQN 311
Query: 68 CK-------PYILFY 75
PYILFY
Sbjct: 312 VTSRFPKDTPYILFY 326
>gnl|CDD|193553 cd05678, M20_dipept_like_1, Uncharacterized M20 Dipeptidases.
Peptidase M20 family, unknown dipeptidase-like subfamily
1 (inferred by homology to be dipeptidases). M20
dipeptidases include a large variety of bacterial
enzymes including cytosolic nonspecific dipeptidase
(CNDP), Xaa-methyl-His dipeptidase (anserinase),and
canosinase. These dipeptidases have been shown to act on
a wide range of dipeptides, but not larger peptides. For
example, anserinase mainly catalyzes the hydrolysis of
N-alpha-acetylhistidine while carnosinase degrades
beta-alanyl-L-histidine.
Length = 466
Score = 25.7 bits (57), Expect = 4.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 35 HSGHYTAYAIHEAQ 48
HSGHY YA + A
Sbjct: 217 HSGHYGNYAPNPAF 230
>gnl|CDD|162444 TIGR01607, PST-A, Plasmodium subtelomeric family (PST-A). This
model represents a paralogous family of genes in
Plasmodium falciparum and Plasmodium yoelii which are
closely related to various phospholipases and
lysophospholipases of plants as well as generally being
related to the alpha/beta-fold superfamily of
hydrolases. These genes are preferentially located in
the subtelomeric regions of the chromosomes of both P.
falciparum and P. yoelii.
Length = 332
Score = 25.5 bits (56), Expect = 5.7
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 8 RYTYVNDTKNKRQFRFDNLLKASTIGVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPAL 65
+ YVND +FR+D + + A + +A D +P DIP L
Sbjct: 226 KSPYVNDIIKFDKFRYDGGITFN---------LASELIKATDTLDCDIDYIPKDIPIL 274
>gnl|CDD|204854 pfam12226, Astro_capsid_p, Turkey astrovirus capsid protein.
This family of proteins is found in viruses. Proteins
in this family are typically between 241 and 261 amino
acids in length. These proteins are capsid proteins
from various astrovirus strains.
Length = 230
Score = 25.3 bits (55), Expect = 7.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 22 RFDNLLKASTIGVH--SGHYTAYAIHEAQWWHFDDST 56
R++N + + +IG SG T++A+ A WW+ D T
Sbjct: 32 RYNNQITSPSIGYRNESGTGTSFALDSASWWNILDVT 68
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
ScHsp26 is temperature-regulated, it switches from an
inactive to a chaperone-active form upon elevation in
temperature. It associates into large 24-mers storage
forms which upon heat shock disassociate into dimers.
These dimers initiate the interaction with non-native
substrate proteins and re-assemble into large globular
assemblies having one monomer of substrate bound per
dimer. This group also contains Arabidopsis thaliana
(Ath) Hsp15.7, a peroxisomal matrix protein which can
complement the morphological phenotype of S. cerevisiae
mutants deficient in Hsps26. AthHsp15.7 is minimally
expressed under normal conditions and is strongly
induced by heat and oxidative stress. Also belonging to
this group is wheat HSP16.9 which differs in quaternary
structure from the shell-type particles of ScHsp26, it
assembles as a dodecameric double disc, with each disc
organized as a trimer of dimers.
Length = 92
Score = 24.6 bits (54), Expect = 7.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 49 WWHFDDSTVMPVDIPALKKC 68
W ++ V D+P +KK
Sbjct: 4 WKETPEAHVFKADVPGVKKE 23
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 24.9 bits (54), Expect = 9.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 65 LKKCKPYILFYVRRVPEVTKKLSD------VTSSMVPT 96
+KK P I+ YV R+ T+ +D +T + P+
Sbjct: 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS 234
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.133 0.412
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,141,197
Number of extensions: 409725
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 24
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)