RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4215
(103 letters)
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 67.7 bits (165), Expect = 6e-15
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 33 GVHSGHYTAYA-IHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
V+ GHY A+ I QW+ F+DS V + + K + Y+LFY R
Sbjct: 427 TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIR 473
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 66.3 bits (162), Expect = 1e-14
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 33 GVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIPALKKCKPYILFYVRRVP 80
GHYTAY +W F+DS+V P+ ++ Y+LFY P
Sbjct: 295 TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 344
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 66.1 bits (161), Expect = 2e-14
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 33 GVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIPALKKCKPYILFYVRRVPEVTKKLS 87
+ GHYTAYA ++ +W++FDDS V + Y+LFY RR E K S
Sbjct: 311 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYKTPS 367
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 65.8 bits (160), Expect = 3e-14
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 33 GVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
VH GHYTA + W ++DS V PV + + Y+LFY
Sbjct: 305 SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLM 350
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 62.6 bits (152), Expect = 4e-13
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 33 GVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIPALKKCKPYILFYVRR 78
G+ GHYTAY + A +W+ FDD V + + ++K YILFY
Sbjct: 348 GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 395
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 60.8 bits (147), Expect = 1e-12
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 33 GVHSGHYTAYAIHEA-QWWHFDDSTVMPVDIPALKKCK-------PYILFYVRRVPEVTK 84
SGHY ++ + +W FDD V V + + Y+L Y R E+ +
Sbjct: 340 SSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEIME 399
Query: 85 KLSD 88
+ S+
Sbjct: 400 EESE 403
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 56.4 bits (135), Expect = 6e-11
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 33 GVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRRVP 80
GHY + E +W ++D V + P K YI FY +RV
Sbjct: 809 STMCGHYVCHIKKEGRWVIYNDQKVCASEKPP--KDLGYIYFY-QRVA 853
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 48.3 bits (115), Expect = 4e-08
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 33 GVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIP-ALKKC--------------KPYILFY 75
H GHY Y + +W FDD V A++ Y+L Y
Sbjct: 252 DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVY 311
Query: 76 VRRVPEVTKKLSDVTSSMVPTRIPTQ 101
+R ++++ L VT +P ++ +
Sbjct: 312 IRES-KLSEVLQAVTDHDIPQQLVER 336
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 46.9 bits (111), Expect = 1e-07
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 33 GVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIP-ALKKC--------------KPYILFY 75
H GHY Y + +W FDD V A++ Y+L Y
Sbjct: 421 DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVY 480
Query: 76 VRRVPEVTKKLSDVTSSMVPTRIPTQ 101
+R ++++ L VT +P ++ +
Sbjct: 481 IRES-KLSEVLQAVTDHDIPQQLVER 505
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Length = 415
Score = 43.4 bits (101), Expect = 2e-06
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 35 HSGHYTAY---AIHEAQWWHFDDSTVMPVDIPALKKCK-------PYILFYVRRVP 80
SGHY A+ + E +W+ F+D V V+ ++ IL Y +
Sbjct: 360 ESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMY-KGFG 414
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 24.6 bits (54), Expect = 4.4
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 64 ALKKCKPYILFYVRRVPEVTKKLSDVTSS 92
ALK+ + + PE + S
Sbjct: 83 ALKRAGQSVTIVAQYRPEEYSRFESSGPS 111
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 25.1 bits (55), Expect = 5.0
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 2 ADGDKRRYT-YVNDTKNKRQFRFD 24
D R Y V +T K+ + +D
Sbjct: 181 HMNDGRPYQLIVAETPTKKLWSYD 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.412
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,591,417
Number of extensions: 80610
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 19
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)