RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4215
(103 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 57.0 bits (136), Expect = 1e-11
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 33 GVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIPALKKCKPYILFYVR 77
G+ GHYTAY + A +W+ FDD V + + ++K YILFY
Sbjct: 301 GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 57.1 bits (136), Expect = 1e-11
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 33 GVHSGHYTAYAIHEA--QWWHFDDSTVMPVDIPALKKCKPYILFYVR 77
GHYTAY +W F+DS+V P+ ++ Y+LFY
Sbjct: 289 TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 335
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 52.8 bits (125), Expect = 4e-10
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 33 GVHSGHYTAYAIH-EAQWWHFDDSTVMPVDIPALKKCK-------PYILFYVRR 78
SGHY ++ + +W FDD V V + + Y+L Y R
Sbjct: 330 SSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 383
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 52.9 bits (125), Expect = 4e-10
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 33 GVHSGHYTAYA---IHEAQWWHFDDSTVMPVDIPALKKCK-------PYILFYVR 77
SGHY A+ + E +W+ F+D V V+ ++ IL Y
Sbjct: 340 NSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKG 394
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 46.2 bits (108), Expect = 8e-08
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 35 HSGHYTAYAIHEA--QWWHFDDSTVMPV---------------DIPALKKCKPYILFYVR 77
H GHY Y + +W FDD V D+ Y+L Y+R
Sbjct: 254 HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIR 313
Query: 78 RVPEVTKKLSDVTSSMVPTRI 98
++++ L VT +P ++
Sbjct: 314 ES-KLSEVLQAVTDHDIPQQL 333
>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 418
Score = 27.7 bits (61), Expect = 0.27
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 38 HYTAYAIHEAQWWHFDDSTVMPVDIPALKKCKPYILFYVRR------VPEVTKKLSD 88
H A A ++DD + + +P L + P + + + K+L D
Sbjct: 306 HIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLD 362
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Length = 149
Score = 23.2 bits (49), Expect = 6.0
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 19 RQFRFDNLLKASTIGVHSGHYTAYAIHEAQWWHFDDSTVMPVDIPAL-KKCKPYILFYVR 77
++ + D +LK + + + I + V P++I L + + +I +++
Sbjct: 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLD 141
Query: 78 RV--PEV 82
V PE+
Sbjct: 142 IVVLPEM 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.412
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 405,986
Number of extensions: 16623
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 14
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)