BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4218
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EA3|A Chain A, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA3|B Chain B, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
Length = 298
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 268 YDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
YD K +S++D ET+ N ED+++ NF S
Sbjct: 204 YDEKVKSIKDTMDETMNNSEDLNHLYINFTSLS 236
>pdb|3EA1|A Chain A, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA1|B Chain B, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA2|A Chain A, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
pdb|3EA2|B Chain B, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
Length = 298
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 268 YDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
YD K +S++D ET+ N ED+++ NF S
Sbjct: 204 YDEKVKSIKDTMDETMNNSEDLNHLYINFTSLS 236
>pdb|1RW0|A Chain A, Crystal Structure Of Protein Yfih From Salmonella Enterica
Serovar Typhi, Pfam Duf152
pdb|1RW0|B Chain B, Crystal Structure Of Protein Yfih From Salmonella Enterica
Serovar Typhi, Pfam Duf152
Length = 243
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 396 IIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGIMNRPEHQDED 443
I+P + P G+ C TR G++ S +LG G + PEH +E+
Sbjct: 5 IVPQWPLPKGVAACSSTRIGGVSLSPYDSLNLGAHCG--DNPEHVEEN 50
>pdb|1T6M|A Chain A, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
The Role Of Calcium And Surrounding Amino Acids On
Active Site Geometry And Catalysis.
pdb|1T6M|B Chain B, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
The Role Of Calcium And Surrounding Amino Acids On
Active Site Geometry And Catalysis
Length = 299
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 268 YDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
YD K +S++D ET+ N ED+++ NF S
Sbjct: 205 YDEKVKSIKDTMDETMNNSEDLNHLYINFTSLS 237
>pdb|2PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D198e
Length = 298
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 268 YDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
YD K +S++D ET+ N ED+++ NF S
Sbjct: 204 YDEKVKSIKDTMDETMNNSEDLNHLYINFTSLS 236
>pdb|7PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant R163k
Length = 298
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 268 YDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
YD K +S++D ET+ N ED+++ NF S
Sbjct: 204 YDEKVKSIKDTMDETMNNSEDLNHLYINFTSLS 236
>pdb|2OR2|A Chain A, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
pdb|2OR2|B Chain B, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
Length = 296
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 268 YDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
YD K +S++D ET+ N ED+++ NF S
Sbjct: 204 YDEKVKSIKDTMDETMNNSEDLNHLYINFTSLS 236
>pdb|3PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D274s
Length = 298
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 268 YDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
YD K +S++D ET+ N ED+++ NF S
Sbjct: 204 YDEKVKSIKDTMDETMNNSEDLNHLYINFTSLS 236
>pdb|6PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant H32l
Length = 298
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 268 YDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
YD K +S++D ET+ N ED+++ NF S
Sbjct: 204 YDEKVKSIKDTMDETMNNSEDLNHLYINFTSLS 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,047,597
Number of Sequences: 62578
Number of extensions: 544482
Number of successful extensions: 841
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 15
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)