RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4218
(520 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 4e-09
Identities = 73/415 (17%), Positives = 124/415 (29%), Gaps = 115/415 (27%)
Query: 150 DEFVQPKLIQD-YDSKRDRWAGYDPSNHKAIV---EHYQKIEEAKRELRADK-------- 197
E QP ++ Y +RDR + K V + Y K+ +A ELR K
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 198 ------LDAGVSIDNR------------GSKEGDEDKDDLEEDEDKYVDEVDMPGTKVDS 239
+ V + + K + + LE + ++ D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 240 KQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYET-------VANPEDVDYA 292
I +R LR L ++ PYE V N + +
Sbjct: 220 SSNIKLR----IHSIQAELRRL-------------LKSKPYENCLLVLLNVQNAKAWNA- 261
Query: 293 GENFVRFSGD------TR-KHATAQLFAWEAYEKGVDVH--VLAEPTKLELLKKEYEEKK 343
F+ TR K T L A +D H L LL K + +
Sbjct: 262 ------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 344 EEFKKEVSS------SVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTII 397
++ +EV + S+I AE ++ +V + +I+ + +
Sbjct: 316 QDLPREVLTTNPRRLSII-----AESIRDGLATW---DNWKHVNCDKLTTIIESSLNVLE 367
Query: 398 PVYGGPGGIMECGDTREA--GLATSSVVGASLGPPPGIMNRPEH------QDEDEEDSGH 449
P + R+ L+ V PP + P D + D
Sbjct: 368 P-----------AEYRKMFDRLS---VF------PPSA-HIPTILLSLIWFDVIKSDVMV 406
Query: 450 KKQKKNKKS--KKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNS 502
K +K S +K+ KE S E K E E ++ ++++S
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Score = 52.9 bits (126), Expect = 2e-07
Identities = 66/475 (13%), Positives = 125/475 (26%), Gaps = 132/475 (27%)
Query: 10 VSEILR---TKASEDD---EPKKKSRED---WRKAKELEEARKAGTAPAAVDEHGRDINP 60
V ++ + +K D S W L ++ + +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMVQKFVEEVLRINYK- 92
Query: 61 HIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACE- 119
++ S P + P++ + +++ + K V K R+ E
Sbjct: 93 ----FLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 120 ------------NCGAMTHKKKDCLE----RPRKVLAKYSN-------AQIACDEFVQPK 156
G K + KV K E V +
Sbjct: 148 RPAKNVLIDGVLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LE 200
Query: 157 LIQDYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRADK--------LD--------- 199
++Q + D + I I+ R L K L
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 200 ------------------AGVSIDNRGSKEGDEDKDDLEEDED-----KYVD--EVDMPG 234
+S D L DE KY+D D+P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 235 TKVD-SKQRITV--RNLRIREDTAKYLRNLDPNSAYYDPKTRSMRD-----NPYETVANP 286
+ + +R+++ ++R T ++++ D T + P E
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVN-----CDKLTTIIESSLNVLEPAEYRKM- 374
Query: 287 EDVDYAGENFVRFSGDTRKHATAQLFA--WEAYEKGVDVHVLAEPTKLELLKKEYEE--- 341
+ + F H L + W K + V+ + K L++K+ +E
Sbjct: 375 ----F--DRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 342 ----------KKEEFKKEVSSSVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYG 386
K E + + S++D Y + L+ + Y YS G
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYF-YSHIG 478
Score = 38.3 bits (88), Expect = 0.008
Identities = 22/200 (11%), Positives = 57/200 (28%), Gaps = 50/200 (25%)
Query: 135 PRKVLA------KYSNAQIACDEFVQPKLIQDYDSKRDRWAGYD------------PSNH 176
P +L+ S+ + ++ + L++ K + + H
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALH 446
Query: 177 KAIVEHYQKIEEAKRELRADKLDAGVSIDN----------RGSKEGDEDKDDLEEDEDKY 226
++IV+HY + +D L +D + + + +
Sbjct: 447 RSIVDHYN----IPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERM----TLFRMVF 497
Query: 227 VD----EVDMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYET 282
+D E + ++ N Y + N Y+ ++ D
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQ--QLKFYKPYICDNDPKYERLVNAILDF---- 551
Query: 283 VANPEDVDYAGE--NFVRFS 300
+ E+ + + +R +
Sbjct: 552 LPKIEENLICSKYTDLLRIA 571
Score = 37.1 bits (85), Expect = 0.017
Identities = 55/409 (13%), Positives = 104/409 (25%), Gaps = 140/409 (34%)
Query: 57 DINPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRA--SLDE-WYKRGVD-------- 105
D + +I I S +R+ + L + +
Sbjct: 218 DHSSNIKLRIHSIQAEL---------RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 106 --TT---------SQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQI------A 148
TT S A + +T + + +L KY + +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------KSLLLKYLDCRPQDLPREV 322
Query: 149 CDEFVQP-------KLIQDYDSKRDRWAGYDPSNHKAIVEH-YQKIEEAKRELRA--DKL 198
P + I+D + D W + I+E +E A E R D+L
Sbjct: 323 LT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRL 378
Query: 199 -----DAGVSID------NRGSKEGDED-------KDDLEEDEDKYVDEVDMPGTKVDSK 240
A + K +E+ + + +P ++ K
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELK 436
Query: 241 QRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
++ + A + +D Y PKT D + D Y
Sbjct: 437 VKL-------ENEYALHRSIVD---HYNIPKTFDSDD----LIPPYLD-QY--------- 472
Query: 301 GDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKE------VSSSV 354
++ + H L E+ E+ F+ + +
Sbjct: 473 ----------FYSHIGH------H---------LKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 355 IDKYGGAEHLQAPPKALL--LAQTEDYV-----EYSRYGKVIKMYIPTI 396
A + L L + Y+ +Y R I ++P I
Sbjct: 508 R-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Score = 36.8 bits (84), Expect = 0.021
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 38/149 (25%)
Query: 25 KKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINPHIPQYISSAPWYFGSKGPTLQH-Q 83
K K ++ + + + P D I P++ QY + G H +
Sbjct: 436 KVKLENEYALHRSIVDHYNI---PKTFDSDDL-IPPYLDQYFY---SHIG------HHLK 482
Query: 84 RIQPDQE----------------KPRASLDEWYKRG--VDTTSQAKKFRKGACENCGAMT 125
I+ + K R W G ++T Q K ++ C+N
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 126 HKKKDC---LERPRKVL--AKYSN-AQIA 148
L + + L +KY++ +IA
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 30.2 bits (67), Expect = 2.2
Identities = 33/233 (14%), Positives = 63/233 (27%), Gaps = 59/233 (25%)
Query: 315 EAYEKGVDVHVLAEPTKLELLKKEYEE---------------------KKEEFKKEVSSS 353
+A+ D + + K L K+E + ++E +K V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 354 VIDKYGG-AEHLQAPPKALLLAQTEDYVEY-SR-YG---KVIKMYIP------------- 394
+ Y ++ + + T Y+E R Y K +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 395 -----TIIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGI-------MNRPEHQDE 442
+ + G G G T A S I N PE E
Sbjct: 146 ELRPAKNVLIDGVLG----SGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 443 DEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDE 495
+ + + N S+ K ++ L++ + + + LL +
Sbjct: 201 MLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Score = 29.1 bits (64), Expect = 5.4
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 439 HQDED--EEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEE-----EEQREADRLL 491
H D + E +K + K ++ K L KEE + L
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 492 RMDERKRSYNSMISVKEPTMDSDRGN 517
R+ S + V++ + R N
Sbjct: 66 RLFWTLLSKQEEM-VQKFVEEVLRIN 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 2e-05
Identities = 85/526 (16%), Positives = 145/526 (27%), Gaps = 173/526 (32%)
Query: 53 EHGRDINPHIPQYISSAPWYFGSKGPTLQHQ--RIQPDQEKPRASLDEWYKRGVDTTSQA 110
HG + + + +A ++ S LQ Q +I P+ + A+ DE T+ A
Sbjct: 12 SHG-SLEHVLL--VPTASFFIAS---QLQEQFNKILPEPTEGFAADDE-------PTTPA 58
Query: 111 K---KFRKGACENCGAMTHK-KKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRD 166
+ KF G ++ + + + +VL + EF Y D
Sbjct: 59 ELVGKF-------LGYVSSLVEPSKVGQFDQVL------NLCLTEFEN-----CYLEGND 100
Query: 167 ---RWAGYDPSNHKAIVEHYQKIE---EAKRELRADKLDAGVSIDNRGSKEGD------- 213
A N +V+ + I+ A+ + S R EG+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 214 ------EDKDDLEEDEDKYVDEV----DMPGTKVD---SKQRITVRNL-RIREDTAK-YL 258
+D Y +E+ V T+ L R D K +
Sbjct: 161 GGQGNTDD----------YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 259 RNLD-----------PNSAYYDPKTRSMRDNP---------YETVANPEDVDYAGENFVR 298
+ L+ P+ Y S P Y A GE
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISC---PLIGVIQLAHYVVTAKLLGFTP-GELRSY 266
Query: 299 FSGDTRKHA----TAQLFA----WEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEV 350
G T H+ TA A WE++ V + +L F
Sbjct: 267 LKGAT-GHSQGLVTAVAIAETDSWESFFVSVR-------KAITVL----------F---- 304
Query: 351 SSSVIDKYGGAE-HLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIP---VYGGPGGI 406
+ G + P +L + ED +E + G +P+ P +
Sbjct: 305 -------FIGVRCYEAYPNTSLPPSILEDSLENNE-G------VPS--PMLSISNLTQEQ 348
Query: 407 MECG-DTREAGLATSSVVGASL--GP-------PPGIMNRPEHQDEDEEDSGHKKQKKNK 456
++ + + L V SL G PP + + Q +
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 457 KSKKKKKEKE--------------KSAEEKMKEALKKEEEEQREAD 488
S++K K A + + + L K D
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Score = 46.6 bits (110), Expect = 2e-05
Identities = 33/205 (16%), Positives = 68/205 (33%), Gaps = 62/205 (30%)
Query: 243 ITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGEN------- 295
+ R L + + ++ L P ++++ +++ + + P + +A ++
Sbjct: 4 YSTRPLTLSHGSLEH-VLLVPTASFF--IASQLQEQFNKILPEPTE-GFAADDEPTTPAE 59
Query: 296 -FVRFSG-------DTRKHATAQL--FAWEAYE----KGVDVHVLAEPTKLELLKKEYEE 341
+F G ++ Q+ +E +G D+H LA +LL++ +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA----AKLLQE--ND 113
Query: 342 KKEEFKKEVSSSVIDKYGGAEHL------QAPPKALLLA--------------Q--TEDY 379
KE +I Y A + + AL A Q T+DY
Sbjct: 114 TTLVKTKE----LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 380 VE-----YSRYGKVIKMYIPTIIPV 399
E Y Y ++ I
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAET 194
Score = 40.8 bits (95), Expect = 0.001
Identities = 61/344 (17%), Positives = 102/344 (29%), Gaps = 131/344 (38%)
Query: 35 AKEL-EEARKAGTAPAAVDEHGR--------DI---NPHIPQYISSAPWYF-GSKGPTLQ 81
A+++ A D H + DI NP + +F G KG
Sbjct: 1642 AQDVWNRA----------DNHFKDTYGFSILDIVINNP------VNLTIHFGGEKG---- 1681
Query: 82 HQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAK 141
+RI+ E A + ++ VD + +K K E H + +L+
Sbjct: 1682 -KRIR---ENYSAMI---FETIVDGKLKTEKIFKEINE------HSTSYTFRSEKGLLSA 1728
Query: 142 YSNAQ-------IACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEH----YQKIEEAK 190
Q A E ++ K + D+ +AG H Y A
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADAT---FAG-----------HSLGEYA----A- 1769
Query: 191 RELRADKLDAGV-SIDN-------RGSKEGDEDKDDLEEDEDKYVDEVDM----PGTKVD 238
L + A V SI++ RG D E Y M PG
Sbjct: 1770 --LAS---LADVMSIESLVEVVFYRGMTMQVAVPRD-ELGRSNY----GMIAINPGRVAA 1819
Query: 239 SKQRITVRNL--RIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDY--AGE 294
S + ++ + R+ + T + E + N Y +
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLV----------------------E-IVN-----YNVENQ 1851
Query: 295 NFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKE 338
+V +GD R T + +D+ L + LE ++
Sbjct: 1852 QYV-AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 30.8 bits (69), Expect = 1.6
Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 62/216 (28%)
Query: 45 GTAPAAVDEHGRDINPHIPQ----YIS--SAPWYFGSKGP--TLQHQRIQPDQEKPRASL 96
V ++ N H+P IS + GP +L + + K + L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 97 DEWYKRGVDTTSQAK-KF--RKGACENC--------------GAMTHKKKDCLERPRKVL 139
D Q++ F RK N A KD ++
Sbjct: 403 D-----------QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 140 AK------Y-----SNAQIACDEFVQPKLIQDYDSKRDRWAG-----------YDPSNHK 177
AK Y S+ ++ + +++ +W + P
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGS-ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 178 AIVEHYQKIEEAK--RELRADKLDAGVSIDNRGSKE 211
+ + ++ R + A LD D+ G K+
Sbjct: 511 GLGVLTHRNKDGTGVRVIVAGTLDINPD-DDYGFKQ 545
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.005
Identities = 12/66 (18%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 434 MNRPEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRM 493
+ + + ++ E S K +++ +K ++ K E++ +E KK+ EE + + ++
Sbjct: 74 IAQADRLTQEPE-SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ-RQSEQV 131
Query: 494 DERKRS 499
++ K +
Sbjct: 132 EKNKIN 137
Score = 36.7 bits (84), Expect = 0.008
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 438 EHQDED--EEDSGHKKQKKNKKSKKKKK-----EKEKSAEEKMKEALKKEEEE---QREA 487
E Q + E D+ K ++ + K KK +++ EK K + ++ Q +A
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Query: 488 D 488
D
Sbjct: 152 D 152
Score = 36.3 bits (83), Expect = 0.013
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 430 PPGIMNRPEHQDEDEEDSGHKKQKKNKKSKKKKKE-KEKSAEE------KMKEALKKEEE 482
+ PE + E+ + Q+ + SK ++E +EK+ ++ + E ++K +
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 483 EQREAD 488
R AD
Sbjct: 137 NNRIAD 142
Score = 28.2 bits (62), Expect = 4.9
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 38/96 (39%)
Query: 17 KASEDDEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINPHIPQYISSAPWYFGSK 76
+ +++ E +K RE + K L+E D
Sbjct: 79 RLTQEPESIRKWRE--EQRKRLQE---------------LDAA----------------- 104
Query: 77 GPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKK 112
Q +EK + L+EW +R + + K
Sbjct: 105 ----SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Score = 27.8 bits (61), Expect = 7.7
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 302 DTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEVSSSVI 355
+ R+ A L W ++ + ++E K + F ++ + +I
Sbjct: 111 EWREKAKKDLEEW--NQR--------QSEQVEKNKINNRIADKAFYQQPDADII 154
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 35.9 bits (83), Expect = 0.026
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 428 GPPPGIMNRPEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEE 483
GP + + E + +D E + ++K++KKKK+K E EE E
Sbjct: 343 GPFEPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA
complex; NMR {Homo sapiens}
Length = 74
Score = 31.5 bits (71), Expect = 0.10
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 107 TSQAKKFRKGACENCGAMTHKKKDCLERPRK 137
+ Q ++ + C NCG + H K+C P+
Sbjct: 16 SMQKRRSKGDRCYNCGGLDHHAKECKLPPQP 46
Score = 27.3 bits (60), Expect = 2.6
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 114 RKGACENCGAMTHKKKDCLERPRK 137
+ C C +++H C + ++
Sbjct: 45 QPKKCHFCQSISHMVASCPLKAQQ 68
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 33.0 bits (74), Expect = 0.24
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 440 QDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQRE 486
+ E + S + +K+++ ++KE+S +E +K+ +K E ++ +
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 541
Score = 29.2 bits (64), Expect = 3.8
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERK 497
EH + E + + + K+ ++ K + E+ +KE +KE + + L+ R+
Sbjct: 526 EHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
Query: 498 RSYNSM 503
R ++
Sbjct: 586 RKACTI 591
Score = 28.8 bits (63), Expect = 5.0
Identities = 10/59 (16%), Positives = 25/59 (42%)
Query: 440 QDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKR 498
+ E E + K + + S K E ++ E+ M++ + +E ++ + D +
Sbjct: 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQL 542
Score = 28.4 bits (62), Expect = 6.5
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLR 492
+ + +E +K + KE+E++ K++E + +E ++ R+++
Sbjct: 519 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMK 573
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.5 bits (74), Expect = 0.41
Identities = 12/64 (18%), Positives = 30/64 (46%)
Query: 442 EDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYN 501
E+EE+ + Q + KK +++ + E+ EE+ K + E+ ++ +M++
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 502 SMIS 505
+
Sbjct: 997 DQNN 1000
Score = 29.4 bits (66), Expect = 3.4
Identities = 10/73 (13%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEE--EQREADRLLRMDE 495
+ +++++ K++K + + + EE+ + L K + E ++ +R+ +
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Query: 496 RKRSYNSMISVKE 508
++S + +K
Sbjct: 1051 EEKSRQELEKIKR 1063
Score = 28.3 bits (63), Expect = 7.3
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 440 QDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEE--EQREADRLLRMDERK 497
+ +E +K+ + + E EE+ + L+ E++ +Q+ D +++E +
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 498 RSYNSMISVKE 508
+ + K
Sbjct: 969 AARQKLQLEKV 979
Score = 28.3 bits (63), Expect = 7.8
Identities = 8/64 (12%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 450 KKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNSMISVKEP 509
+ ++ ++ ++ + ++K +++M + ++ EEE+ ++ K + + I E
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA---RQKLQLEKVTADGKIKKMED 990
Query: 510 TMDS 513
+
Sbjct: 991 DILI 994
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.0 bits (73), Expect = 0.50
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 442 EDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREAD-RLLRMDERKRSY 500
+++ +K + + + E E L+ EEE + A R+L + E
Sbjct: 938 DEQNKE-YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996
Query: 501 NSMISVKE 508
+ +
Sbjct: 997 RKELHQTQ 1004
Score = 28.5 bits (64), Expect = 6.3
Identities = 12/64 (18%), Positives = 29/64 (45%)
Query: 435 NRPEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMD 494
++ +H+ E ++ K K++ + +++ E ++K+ E+ + L D
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
Query: 495 ERKR 498
ER R
Sbjct: 1075 ERLR 1078
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 63
Score = 28.8 bits (64), Expect = 0.66
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 118 CENCGAMTHKKKDCLERPRK 137
C NCG + H K+C P+
Sbjct: 10 CYNCGGLDHHAKECKLPPQP 29
Score = 26.8 bits (59), Expect = 3.7
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 114 RKGACENCGAMTHKKKDCLERPRK 137
+ C C +++H C + ++
Sbjct: 28 QPKKCHFCQSISHMVASCPLKAQQ 51
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 31.3 bits (70), Expect = 0.68
Identities = 12/58 (20%), Positives = 19/58 (32%)
Query: 450 KKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNSMISVK 507
+ + K KEK E+ K+ E +R + R + SY K
Sbjct: 25 QVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHK 82
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 30.9 bits (69), Expect = 0.92
Identities = 8/58 (13%), Positives = 23/58 (39%)
Query: 450 KKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNSMISVK 507
K ++ K S + K+++ K ++ + E +++ R + ++ K
Sbjct: 22 AKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAK 79
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 30.4 bits (69), Expect = 0.96
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 434 MNRPEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLR 492
PE Q +E ++ + + + ++ + E+ + E + RE D +LR
Sbjct: 6 QKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILR 64
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 31.1 bits (69), Expect = 1.1
Identities = 9/57 (15%), Positives = 26/57 (45%)
Query: 439 HQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDE 495
H + ++ ++ + K EK K+ +EK K+++ + + + L ++ +
Sbjct: 2 HHHHHHAAAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQ 58
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 30.6 bits (68), Expect = 1.1
Identities = 8/61 (13%), Positives = 26/61 (42%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERK 497
E + + K + + ++K+ + + +E + + + E+ R ++E++
Sbjct: 125 EIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAAELEEKR 184
Query: 498 R 498
R
Sbjct: 185 R 185
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.5 bits (68), Expect = 1.3
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 439 HQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKR 498
H+ D H+ +KK + KKK + E +A ++ K A + + + +A + K
Sbjct: 365 HEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKE 424
Query: 499 SYN 501
N
Sbjct: 425 KKN 427
Score = 28.2 bits (62), Expect = 8.1
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 442 EDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQRE-ADRLLRMDERKRSY 500
+ EE+ ++ K+ + + KE EK EK K ++E+++ D+ +D+ ++
Sbjct: 337 KKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAF 396
Query: 501 NSMISVKE 508
+ E
Sbjct: 397 KQRKTAAE 404
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding,
eukaryotic regulatory protein, transcription/DNA
complex; HET: DNA; 2.20A {Saccharomyces cerevisiae}
SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Length = 63
Score = 27.9 bits (62), Expect = 1.5
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 442 EDEEDSGHKKQKKN----KKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRL 490
+ D K+ +N ++S+ +K ++ K E+K++E L K + E RL
Sbjct: 4 PESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 56
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA
recognition, zinc finger, viral protein; NMR {Human
immunodeficiency virus type 2} SCOP: g.40.1.1
Length = 49
Score = 27.2 bits (60), Expect = 1.6
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 114 RKGACENCGAMTHKKKDCLER 134
R+ C CG H C ER
Sbjct: 26 RRQGCWKCGKTGHVMAKCPER 46
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 28.9 bits (65), Expect = 1.8
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 441 DEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEE 482
E S K K ++ ++ E + + + ++ ++EEE
Sbjct: 94 HAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA
surveillance binds to TRF4P/AIR2P heterodimer; 2.70A
{Saccharomyces cerevisiae}
Length = 83
Score = 28.1 bits (62), Expect = 1.9
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 112 KFRKGACENCGAMTHKKKDCLERPRKVLAKYSN 144
++K C C + H K+ C R + N
Sbjct: 2 SWKKVQCTLCKSKKHSKERCPSIWRAYILVDDN 34
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 29.9 bits (68), Expect = 2.0
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 441 DEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRL 490
+E +E+ K ++K+ ++ + + +KE L + E+ + +L
Sbjct: 259 EETDEE---------KAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKL 299
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 9/33 (27%)
Query: 342 KKEEFKKEVSSSVIDKYGGAEHLQAPPKALLLA 374
+K+ KK + +S+ K L A A LA
Sbjct: 18 EKQALKK-LQASL--K------LYADDSAPALA 41
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA
complex; NMR {Rous sarcoma virus}
Length = 61
Score = 27.1 bits (60), Expect = 2.2
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 111 KKFRKGACENCGAMTHKKKDCLERP 135
+ C+ C M H K C +R
Sbjct: 26 SGNSRERCQLCNGMGHNAKQCRKRD 50
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 29.6 bits (66), Expect = 2.4
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 445 EDSGHKKQKKNKKSKKKKKEKEKSAEEKM------KEALKKEEEEQREA 487
E+ ++K+ K + KK+ + S +K K + + +E E+
Sbjct: 249 ENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR
{Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB:
1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A*
1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Length = 55
Score = 26.9 bits (59), Expect = 2.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 114 RKGACENCGAMTHKKKDCLER 134
RK C CG H+ KDC ER
Sbjct: 32 RKKGCWKCGKEGHQMKDCTER 52
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 29.5 bits (67), Expect = 2.7
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 437 PEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEE 482
++ EE+ K++K++ + +E+E+ + K K+ K +
Sbjct: 219 ETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding
protein, retrovirus, viral protein; NMR {Mason-pfizer
monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Length = 60
Score = 26.8 bits (59), Expect = 2.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 116 GACENCGAMTHKKKDCLERPRK 137
G+C CG H K+C E
Sbjct: 2 GSCFKCGKKGHFAKNCHEHAHN 23
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 3.1
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 74 GSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCG 122
G +GP L P+ + + E + G D C CG
Sbjct: 12 GRRGPNLNIVLTCPECKVYPPKIVERFSEG-DVV----------CALCG 49
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 29.6 bits (67), Expect = 3.1
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 441 DEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRL 490
+E EE+ K+ ++++K + + MKE L + E+ ++RL
Sbjct: 278 EESEEE---------KQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERL 318
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding,
exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Length = 124
Score = 28.2 bits (62), Expect = 3.1
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 100 YKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLER 134
+ F C NCG H DC E+
Sbjct: 90 VDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 124
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.5 bits (66), Expect = 3.1
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 23/98 (23%)
Query: 416 GLATSSVVGASLG----------------PPPGIMNRPEHQD-------EDEEDSGHKKQ 452
G S + G S G P ++ E EDE+ + +
Sbjct: 54 GSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRL 113
Query: 453 KKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRL 490
K N K K+K ++ + M E E++++ D L
Sbjct: 114 KYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDIL 151
Score = 28.4 bits (63), Expect = 6.1
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERK 497
E E E++ K S K +E ++ AL+KE E R + + E +
Sbjct: 137 EANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGE-RTHAETVMVKEYR 195
Query: 498 RSYNSMISVKE 508
+++ + E
Sbjct: 196 DKIDALKNAIE 206
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 29.2 bits (66), Expect = 3.3
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
Query: 441 DEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRL 490
EDEE+ KK +++KK K ++ + MK+ L+K+ E+ ++RL
Sbjct: 262 PEDEEE---------KKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRL 302
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.1 bits (64), Expect = 3.5
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 447 SGHKKQKKNKKSKKKKKEKEKSAEEK-MKEALKKEEEEQRE 486
++ +N+ K + EK AE + M+E + + + + +
Sbjct: 305 KRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQM 345
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 29.1 bits (65), Expect = 3.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAE 470
+ +DED+ED K KKKKK+K
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 4.3
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMK--EALKKEEEEQREA--DRLLRM 493
+ + E E+ K ++K +K K + E ++ E+ K EA KE EE+R D
Sbjct: 333 KMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANW 392
Query: 494 DERKRSYNSMISVKEPTMDSDRGN 517
+ ++R S + + +G
Sbjct: 393 EAQQRILEQQNSSRTLEKNKKKGK 416
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.0 bits (66), Expect = 4.4
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 451 KQKKNKKSK---KKKKEKEKSAEEKMK---EALKKEEEEQREADRLLR 492
+ ++N+ +K K E++++ + K E K+ EE RE + L
Sbjct: 48 QTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 28.7 bits (65), Expect = 5.0
Identities = 4/42 (9%), Positives = 12/42 (28%)
Query: 450 KKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLL 491
++ + EK ++ K ++ +L
Sbjct: 226 NEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVL 267
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 28.5 bits (63), Expect = 5.1
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 433 IMNRPEHQDEDEEDSGHKKQKKNKK-SKKKKKEKEKSAEEKMKEALKKEEEEQREAD 488
I P +++ K+ KK + +++K + + +++++ E D
Sbjct: 247 IRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDD 303
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 28.7 bits (65), Expect = 5.2
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 441 DEDEEDSGHKKQKKNKK--SKKKKKEKEKSAEEKMKEALKKEEEEQREADRLL 491
D+D ++ K N K S + +K K E ++ + K ++ + ++
Sbjct: 213 DQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVV 265
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 28.6 bits (64), Expect = 5.5
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 441 DEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRL 490
+E +E+ K ++K+ ++ + + +KE L + E+ + +L
Sbjct: 531 EETDEE---------KAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKL 571
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 976
Score = 28.5 bits (63), Expect = 6.0
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 250 IREDTAKYLRNLDPNSAY------YDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDT 303
+R DT K+L D + +D K S+R T+ G R
Sbjct: 335 VRMDTGKFLSAEDVDGGEAKQFYFFDEKAGSVRKASRGTLKLDFMPALEGTFSARLKNGK 394
Query: 304 RKHAT 308
Sbjct: 395 TIQVR 399
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein,
metal binding protein; NMR {Synthetic}
Length = 39
Score = 25.2 bits (55), Expect = 6.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 114 RKGACENCGAMTHKKKDCLE 133
R+ C NCG+ H+ C +
Sbjct: 20 RQEGCWNCGSKEHRFAQCPK 39
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.129.1.1
Length = 171
Score = 27.5 bits (62), Expect = 6.4
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 399 VYGGPGGIMECGDTREAGLATSSVVGASLGPP 430
GG G ME R VVG + P
Sbjct: 37 ACGGYQGGMEAL-ARGVKAKGGLVVG--VTAP 65
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 6.9
Identities = 17/166 (10%), Positives = 50/166 (30%), Gaps = 12/166 (7%)
Query: 176 HKAIVEHYQKIEEAKRELRADKLDAGVSID-NRGSKEGDEDKDDLEEDEDKYVDEVDMPG 234
+++ + I RE + A +++ ++ + +++ + ++ + +
Sbjct: 1216 GRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEA 1275
Query: 235 TKV---DSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPK----TRSMRDNPYETVANPE 287
++ D + + R I + LR K +R +
Sbjct: 1276 EEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTID 1335
Query: 288 DVDYAGENFVRF-SGDTR-KHATAQLFAWEAYEKGVDVHVLAEPTK 331
D+ A + + D ++ +G V + K
Sbjct: 1336 DLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVF--QK 1379
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 7.2
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 456 KKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRL 490
++SK ++ +E K++L K E QR L
Sbjct: 223 QRSKCGPVGSDERVKE-FKQSLIKYMETQRSYTAL 256
>3jys_A SUSD superfamily protein; structural genomic center for structural
genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Length = 499
Score = 28.2 bits (63), Expect = 7.6
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 7 NVPVSEILRTKASEDDEPKKKSRED-WRK-AKELEEARKAGTAPAAVDEHGR 56
P T+ + EP SRED + EL E P+ E+G
Sbjct: 139 LPP----FITEKNYSIEPAPLSREDLFNWIEAELNEI--KPNLPSPRSEYGV 184
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.0 bits (63), Expect = 8.0
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 451 KQKKNKKSK---KKKKEKEKSAE---------EKMKEALKKEEEEQREADRLLR 492
+K N K K+ K KE + + + KE ++KE E + +
Sbjct: 53 NKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 26.9 bits (59), Expect = 8.2
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 428 GPPPGIMNRPEHQDEDEE-----DSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEE 482
G +D + + KK K + + K EK + + +
Sbjct: 35 KSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKA 94
Query: 483 EQREA 487
EA
Sbjct: 95 ALEEA 99
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 28.0 bits (63), Expect = 8.4
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 457 KSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLR--MDERKRSYNSMISVK 507
+ K+K K +KE +K E +E + +L R+ +N + ++
Sbjct: 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 27.8 bits (62), Expect = 8.6
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 435 NRPEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLR 492
+PE + ++ + ++K +E +A + L+ + E R LR
Sbjct: 29 PQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEME--HRYLR 84
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.5 bits (62), Expect = 9.0
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 450 KKQKKNKKSKKKKKEKEKSAEEKMKE 475
K++K K+ K+ +K+++ E
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHH 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.129 0.368
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,076,531
Number of extensions: 510899
Number of successful extensions: 2263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2102
Number of HSP's successfully gapped: 244
Length of query: 520
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 422
Effective length of database: 3,965,535
Effective search space: 1673455770
Effective search space used: 1673455770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.4 bits)