RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4218
(520 letters)
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency
virus type 1, different isolates [TaxId: 11676]}
Length = 42
Score = 27.1 bits (60), Expect = 0.62
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 111 KKFRKGACENCGAMTHKKKDCLER 134
+ RK C CG H+ KDC ER
Sbjct: 18 RAPRKKGCWKCGKEGHQMKDCTER 41
Score = 26.0 bits (57), Expect = 1.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 118 CENCGAMTHKKKDCLERPRKVLAK 141
C NCG H ++C +K K
Sbjct: 4 CFNCGKEGHTARNCRAPRKKGCWK 27
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.1 bits (65), Expect = 0.74
Identities = 10/61 (16%), Positives = 22/61 (36%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERK 497
+H E E QK +++ K ++ +KM+ + E L+ ++
Sbjct: 67 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 126
Query: 498 R 498
Sbjct: 127 A 127
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 29.3 bits (66), Expect = 0.90
Identities = 7/26 (26%), Positives = 20/26 (76%)
Query: 459 KKKKKEKEKSAEEKMKEALKKEEEEQ 484
+K+++K+ +++EK + L++E+ E+
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEE 128
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.9 bits (64), Expect = 1.3
Identities = 9/61 (14%), Positives = 25/61 (40%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERK 497
+ + + K ++ ++ ++ +E K EKM+ + +EQ L ++ +
Sbjct: 217 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 276
Query: 498 R 498
Sbjct: 277 L 277
Score = 28.6 bits (63), Expect = 2.0
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLR 492
+ + +E +K + KE+E++ K++E + +E ++ R+++
Sbjct: 236 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMK 290
Score = 27.4 bits (60), Expect = 3.9
Identities = 10/59 (16%), Positives = 29/59 (49%)
Query: 440 QDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKR 498
+ E + S + +K+++ ++KE+S +E +K+ +K E ++ + + +
Sbjct: 212 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 270
Score = 27.0 bits (59), Expect = 5.6
Identities = 6/61 (9%), Positives = 28/61 (45%)
Query: 438 EHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERK 497
+++ E+ ++ + ++K + ++ + +E+ + K +E+++ + + R
Sbjct: 229 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 288
Query: 498 R 498
Sbjct: 289 M 289
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.1 bits (63), Expect = 2.0
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 459 KKKKKEKEKSAEEKMKEALKKEEEEQ 484
+ + K+ S EEK+K + E+ +
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLK 136
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 28.2 bits (61), Expect = 2.4
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 158 IQDYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRA 195
+ +D +R W GYD + A Y + E+ + A
Sbjct: 56 LAAFDGQRG-W-GYDGAAFYAPYAPYGRPEDLMALVDA 91
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.0 bits (62), Expect = 2.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 459 KKKKKEKEKSAEEKMKEALKKEEEEQREADRL 490
+ KE +K E + K K +E+ E +RL
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 26.8 bits (59), Expect = 3.9
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 453 KKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQ 484
K K K ++ + E + +E + KE+ ++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQE 33
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.8 bits (56), Expect = 4.0
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 437 PEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEE 482
P H ++ + + KKE + +A + E L KE++
Sbjct: 40 PPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKK 85
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 27.4 bits (59), Expect = 5.0
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 295 NFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEK 342
+FV+ + + + A W + G + + T +E + + +
Sbjct: 458 SFVQ-TLNPNTYRYATAPEWNTWGNGQRLRLQTNDTAMEAVPESSLQD 504
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 26.9 bits (58), Expect = 6.2
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 161 YDSKRDRWAGYDPSNHKAIVEHYQKIEEAKR 191
Y+S D GYD S++ I+ + +E+
Sbjct: 54 YESPNDDN-GYDISDYCKIMNEFGTMEDWDE 83
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 26.9 bits (58), Expect = 6.5
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 161 YDSKRDRWAGYDPSNHKAIVEHYQKIEEAKR 191
R GYD A+ Y E ++
Sbjct: 52 AQFPGKRDWGYDGVYLYAVQNSYGGPEGFRK 82
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency
virus type 2 [TaxId: 11709]}
Length = 29
Score = 23.6 bits (51), Expect = 6.8
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 108 SQAKKFRKGACENCGAMTHKKKDCLERPRK 137
+Q +K + C NCG H + C PR+
Sbjct: 1 AQQRKVIR--CWNCGKEGHSARQC-RAPRR 27
>d1v9ca_ c.23.17.1 (A:) Precorrin-8x methylmutase {Thermus
thermophilus [TaxId: 274]}
Length = 204
Score = 26.4 bits (58), Expect = 7.2
Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 278 NPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKK 337
E +A+PE V A G TR A + G V V PT L L +
Sbjct: 86 EVVELLAHPEVVARAKAT-----GGTRAEAAVAYAWEKGLLDGAIVGVGNAPTFLLALVE 140
Query: 338 EYEEKKE 344
+
Sbjct: 141 AIRQGAR 147
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse
mammary tumor virus [TaxId: 11757]}
Length = 26
Score = 23.4 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 118 CENCGAMTHKKKDCLE 133
C +CG H K+DC E
Sbjct: 5 CFSCGKTGHIKRDCKE 20
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 26.9 bits (58), Expect = 7.4
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 161 YDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRA 195
+ D GY P+ A + ++ + + A
Sbjct: 64 NEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDA 98
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 25.9 bits (56), Expect = 7.6
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 218 DLEEDEDKYVDEVDMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRD 277
D +E + +V + D+PG K + + + V + + + + + + + + RS
Sbjct: 46 DWKETPEAHVFKADLPGVKKEEVK-VEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGK 104
Query: 278 NPYETVANPEDVD 290
ED
Sbjct: 105 FVRRFR-LLEDAK 116
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 26.4 bits (57), Expect = 8.2
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 453 KKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNSMISVK 507
++ + + E++ + E KE L + E RK +N+++ ++
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME------------RKELHNTVMDLR 44
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 25.4 bits (55), Expect = 8.5
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 218 DLEEDEDKYVDEVDMPGTKVD------SKQRITVRNLRIREDTAKYLRNLDPNSAYYDPK 271
+ E + +PG + + +R R + R + +
Sbjct: 14 SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEI 73
Query: 272 TRSMR 276
R+++
Sbjct: 74 YRTIK 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.129 0.368
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,966,188
Number of extensions: 98247
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 69
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.6 bits)