BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy422
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WWB|C Chain C, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
Length = 96
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 73 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
S T+VGS RSP + R GSTVRQRK + + RT AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 66 LKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 5 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNR-TGAGSGGMWRYYTDDSPG 63
S T+VGS RSP + R GSTVRQRK + + R T AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 64 IKVKSPAPASSTSV 77
+KV P P S+
Sbjct: 66 LKV-GPVPVLVMSL 78
>pdb|2WW9|C Chain C, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|C Chain C, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
Length = 87
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 89 PGG------RPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLV 141
PGG R ++++++ T T+ R G S + + YTD++ G +V + VL
Sbjct: 7 PGGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLF 66
Query: 142 MSLLFIASVFMLHIWGKYTR 161
+S+ FI SV LH+ K+T
Sbjct: 67 LSVGFIFSVIALHLLTKFTH 86
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases
With Distinct Activities Highlight The Disulfide
Patterns In The D Domain Of Adamalysin Family Proteins
Length = 397
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 53 MWRYYTDDSPGIKVK 67
M+RYY +D P IK+K
Sbjct: 21 MYRYYNNDKPAIKIK 35
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 49 GSGGMWRYYTDDSPGIKVKSPAPASS 74
GSG +W Y +D+ +KV S A A S
Sbjct: 147 GSGWVWLVYDEDAKALKVVSTANADS 172
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 26.2 bits (56), Expect = 8.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 17/44 (38%)
Query: 57 YTDDSPGIKVKSPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQ 100
Y +S G P S TSVG T P G P G V Q
Sbjct: 741 YLGESEGSDPLYQLPPSFTSVGGRTAGQARASPVGTPAGEVVEQ 784
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 26.2 bits (56), Expect = 9.9, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 17/44 (38%)
Query: 57 YTDDSPGIKVKSPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQ 100
Y +S G P S TSVG T P G P G V Q
Sbjct: 741 YLGESEGSDPLYQLPPSFTSVGGRTAGQARASPVGTPAGEVVEQ 784
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,695,378
Number of Sequences: 62578
Number of extensions: 267488
Number of successful extensions: 312
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 22
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)