BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy422
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RB31|SC61B_PONAB Protein transport protein Sec61 subunit beta OS=Pongo abelii
GN=SEC61B PE=3 SV=3
Length = 96
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 73 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
S T+VGS RSP + R GSTVRQRK + + RT AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 66 LKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 5 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNR-TGAGSGGMWRYYTDDSPG 63
S T+VGS RSP + R GSTVRQRK + + R T AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 64 IKVKSPAPASSTSV 77
+KV P P S+
Sbjct: 66 LKV-GPVPVLVMSL 78
>sp|P60468|SC61B_HUMAN Protein transport protein Sec61 subunit beta OS=Homo sapiens
GN=SEC61B PE=1 SV=2
Length = 96
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 73 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
S T+VGS RSP + R GSTVRQRK + + RT AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 66 LKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 5 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNR-TGAGSGGMWRYYTDDSPG 63
S T+VGS RSP + R GSTVRQRK + + R T AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 64 IKVKSPAPASSTSV 77
+KV P P S+
Sbjct: 66 LKV-GPVPVLVMSL 78
>sp|P60467|SC61B_CANFA Protein transport protein Sec61 subunit beta OS=Canis familiaris
GN=SEC61B PE=1 SV=2
Length = 96
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 73 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
S T+VGS RSP + R GSTVRQRK + + RT AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 66 LKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 5 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNR-TGAGSGGMWRYYTDDSPG 63
S T+VGS RSP + R GSTVRQRK + + R T AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 64 IKVKSPAPASSTSV 77
+KV P P S+
Sbjct: 66 LKV-GPVPVLVMSL 78
>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 subunit beta OS=Mus musculus
GN=Sec61b PE=1 SV=3
Length = 96
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 73 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
S T+VGS RSP + R GSTVRQRK + + RT AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
+KVGPVPVLVMSLLFIA+VFMLHIWGKYTRS
Sbjct: 66 LKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 5 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNR-TGAGSGGMWRYYTDDSPG 63
S T+VGS RSP + R GSTVRQRK + + R T AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 64 IKVKSPAPASSTSV 77
+KV P P S+
Sbjct: 66 LKV-GPVPVLVMSL 78
>sp|Q54YR4|SC61B_DICDI Protein transport protein Sec61 subunit beta OS=Dictyostelium
discoideum GN=sec61b PE=3 SV=1
Length = 61
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 8/63 (12%)
Query: 100 QRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY 159
QR P T G M ++Y++D+ G+KVGP VL MSL+FIA V +LHI GKY
Sbjct: 7 QRAPATV--------NKGGNSMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKY 58
Query: 160 TRS 162
TRS
Sbjct: 59 TRS 61
>sp|Q9HFC7|SC61B_YARLI Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1
Length = 91
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 101 RKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT 160
++PT+T RS G S M + YTD+S G+KV PV V+V+SL FI SV LHI K +
Sbjct: 30 QRPTST---RSVGAGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAKVS 86
>sp|O43002|SC61B_SCHPO Protein transport protein sec61 subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sbh1 PE=3 SV=1
Length = 102
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 73 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGG---------MWR 123
SST ++ A PGG P S +R+R SN AG+ + +
Sbjct: 2 SSTKASGSVKNSAASAPGG-P-KSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLK 59
Query: 124 YYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTR 161
YTD++ G KV PV V+V+S+ FIASVF+LHI + +
Sbjct: 60 LYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVARILK 97
>sp|P38389|SC61B_ARATH Protein transport protein Sec61 subunit beta OS=Arabidopsis
thaliana GN=At2g45070 PE=3 SV=1
Length = 82
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 96 STVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHI 155
+++R+RKPT+ +G +G M ++YTDD+PG+K+ P VL+MS+ FIA V +LH+
Sbjct: 16 ASMRRRKPTSGAGGGGA-SGGAAGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHV 74
Query: 156 WGK 158
GK
Sbjct: 75 MGK 77
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 28 STVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVKSPAPASSTSVG 78
+++R+RKPT+ +G +G M ++YTDD+PG+K+ SP S+G
Sbjct: 16 ASMRRRKPTSGAGGGGA-SGGAAGSMLQFYTDDAPGLKI-SPNVVLIMSIG 64
>sp|Q8J2P4|SC61B_KLULA Protein transport protein Sec61 subunit beta OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1
Length = 88
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 89 PGGRPTGSTVRQRKPTTTTAARSNRT-----GAGSGG----MWRYYTDDSPGIKVGPVPV 139
PGG+ T ++R ++N+T AG GG + + YTD++ G++V P+ V
Sbjct: 6 PGGQRTLQ--KRRNAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVDPLVV 63
Query: 140 LVMSLLFIASVFMLHIWGK 158
L +++ F+ SV LH+ K
Sbjct: 64 LFLAVAFVFSVVALHVVAK 82
>sp|P52871|SC6B2_YEAST Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1
Length = 88
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 89 PGG------RPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLV 141
PGG R ++++++ T T+ R G S + + YTD++ G +V + VL
Sbjct: 7 PGGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLF 66
Query: 142 MSLLFIASVFMLHIWGKYTR 161
+S+ FI SV LH+ K+T
Sbjct: 67 LSVGFIFSVIALHLLTKFTH 86
>sp|P52870|SC6B1_YEAST Protein transport protein SBH1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SBH1 PE=1 SV=1
Length = 82
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 89 PGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIA 148
PGG+ T +Q A+ + + + + Y+D++ G++V P+ VL +++ FI
Sbjct: 7 PGGQRTLQKRKQGSSQKVAASAPKKNTNSNNSILKIYSDEATGLRVDPLVVLFLAVGFIF 66
Query: 149 SVFMLHIWGK 158
SV LH+ K
Sbjct: 67 SVVALHVISK 76
>sp|Q5JDK7|SECG_PYRKO Preprotein translocase subunit SecG OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=secG PE=3
SV=1
Length = 56
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 119 GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 157
G+ R++ +D+ +KV P V+ ++LL IA F+LH++G
Sbjct: 13 AGLMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51
>sp|B6YW71|SECG_THEON Preprotein translocase subunit SecG OS=Thermococcus onnurineus
(strain NA1) GN=secG PE=3 SV=1
Length = 56
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 119 GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 157
G+ R++ +D+ +K+ P V+ ++L+ +A +LH +G
Sbjct: 13 AGLMRFFDEDTKAVKISPRGVIALTLILVALEILLHAFG 51
>sp|Q2KN96|CYTSA_XENTR Cytospin-A OS=Xenopus tropicalis GN=specc1l PE=2 SV=1
Length = 1101
Score = 33.9 bits (76), Expect = 0.53, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 3 PASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSP 62
P SS S AG GG P ++V+ +K +TT+ S +G G R
Sbjct: 41 PGSSLSKAKSNDDLLAGMAGGLPASNSVKVKKNSTTSYPNSGTAMSGQEGRTR------- 93
Query: 63 GIKVKSPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSG 119
+S GS + + ++G G + GS+ + + + A G G G
Sbjct: 94 ------------SSAGSSSNTKRSGSSGAKEVGSSRERLRERSRLTANKKPQGLGVG 138
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 31/79 (39%)
Query: 55 RYYTDDSPGIKVKSPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT 114
R ++ S K P SS S AG GG P ++V+ +K +TT+ S
Sbjct: 25 RSKSESSAPTASKVSRPGSSLSKAKSNDDLLAGMAGGLPASNSVKVKKNSTTSYPNSGTA 84
Query: 115 GAGSGGMWRYYTDDSPGIK 133
+G G R S K
Sbjct: 85 MSGQEGRTRSSAGSSSNTK 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,233,872
Number of Sequences: 539616
Number of extensions: 3639063
Number of successful extensions: 14923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 535
Number of HSP's that attempted gapping in prelim test: 12551
Number of HSP's gapped (non-prelim): 2132
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)