Query psy422
Match_columns 164
No_of_seqs 162 out of 221
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 19:53:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3457|consensus 100.0 2.3E-30 5.1E-35 191.4 5.8 70 94-163 13-87 (88)
2 PF03911 Sec61_beta: Sec61beta 99.7 1.2E-18 2.7E-23 112.8 0.8 41 117-157 1-41 (41)
3 PRK01253 preprotein translocas 99.6 4E-16 8.7E-21 106.6 2.5 43 115-157 10-52 (54)
4 KOG3457|consensus 99.4 3.9E-14 8.5E-19 105.3 2.9 45 23-67 10-59 (88)
5 COG4023 SBH1 Preprotein transl 98.4 1.2E-07 2.5E-12 66.1 2.5 40 118-157 15-55 (57)
6 PF03911 Sec61_beta: Sec61beta 97.8 5.2E-06 1.1E-10 53.8 0.2 19 49-67 1-19 (41)
7 PRK01253 preprotein translocas 97.2 7.3E-05 1.6E-09 51.3 0.0 20 48-67 11-30 (54)
8 PF06692 MNSV_P7B: Melon necro 77.8 0.92 2E-05 32.1 0.6 27 126-152 6-32 (61)
9 COG4023 SBH1 Preprotein transl 65.1 3.2 7E-05 29.2 1.0 17 51-67 16-33 (57)
10 PF00737 PsbH: Photosystem II 64.9 2 4.3E-05 29.7 -0.1 32 126-157 16-47 (52)
11 CHL00066 psbH photosystem II p 62.9 4.2 9E-05 29.9 1.2 33 125-157 30-62 (73)
12 PLN00055 photosystem II reacti 61.5 4.6 9.9E-05 29.7 1.2 33 125-157 30-62 (73)
13 PRK02624 psbH photosystem II r 60.5 4.7 0.0001 29.0 1.1 34 125-158 18-51 (64)
14 PF11185 DUF2971: Protein of u 51.0 5.3 0.00011 26.5 0.1 17 53-69 1-17 (90)
15 PF10679 DUF2491: Protein of u 48.0 10 0.00023 32.3 1.4 22 48-69 61-82 (212)
16 PF06387 Calcyon: D1 dopamine 46.5 11 0.00025 31.9 1.4 33 122-156 72-104 (186)
17 PTZ00234 variable surface prot 43.7 1.1E+02 0.0023 28.8 7.4 22 140-161 367-388 (433)
18 COG4736 CcoQ Cbb3-type cytochr 39.9 16 0.00036 25.7 1.2 19 138-158 14-32 (60)
19 PF12606 RELT: Tumour necrosis 33.4 38 0.00083 23.0 2.1 19 138-156 3-21 (50)
20 KOG2678|consensus 33.0 27 0.00059 30.7 1.7 22 138-159 222-243 (244)
21 PF09753 Use1: Membrane fusion 28.3 21 0.00046 30.0 0.2 14 142-155 237-250 (251)
22 PF07856 Orai-1: Mediator of C 27.8 16 0.00036 30.0 -0.5 43 120-163 129-171 (175)
23 PF10669 Phage_Gp23: Protein g 26.4 47 0.001 26.2 1.8 19 140-158 17-35 (121)
24 PF04834 Adeno_E3_14_5: Early 26.3 29 0.00063 26.7 0.6 37 123-160 12-48 (97)
25 PF05393 Hum_adeno_E3A: Human 26.2 42 0.00092 25.7 1.5 31 123-156 24-54 (94)
26 COG1687 AzlD Predicted branche 25.3 67 0.0015 25.1 2.5 38 120-159 49-86 (106)
27 PF15145 DUF4577: Domain of un 23.8 18 0.00039 29.0 -0.9 24 132-155 63-86 (128)
28 PRK13892 conjugal transfer pro 23.1 22 0.00047 28.8 -0.6 38 120-158 75-113 (134)
29 PF15298 AJAP1_PANP_C: AJAP1/P 22.7 66 0.0014 27.7 2.2 36 123-159 88-123 (205)
30 PF14341 PilX_N: PilX N-termin 22.4 69 0.0015 21.0 1.8 18 139-156 4-21 (51)
31 PF05663 DUF809: Protein of un 22.3 76 0.0016 25.2 2.3 19 139-157 22-40 (138)
32 PF05814 DUF843: Baculovirus p 22.3 57 0.0012 24.5 1.5 18 139-156 27-44 (83)
33 PF15048 OSTbeta: Organic solu 21.4 71 0.0015 25.6 2.0 14 122-135 25-38 (125)
34 PF12911 OppC_N: N-terminal TM 20.7 88 0.0019 20.0 2.0 19 141-159 19-37 (56)
35 PF02470 MCE: mce related prot 20.6 60 0.0013 22.2 1.3 25 54-78 5-29 (81)
36 PF08114 PMP1_2: ATPase proteo 20.2 1.1E+02 0.0024 20.5 2.4 16 138-153 10-25 (43)
No 1
>KOG3457|consensus
Probab=99.96 E-value=2.3e-30 Score=191.41 Aligned_cols=70 Identities=56% Similarity=0.925 Sum_probs=61.8
Q ss_pred CCcccccccCCC-----CCccccCCCCCCCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhhcccccC
Q psy422 94 TGSTVRQRKPTT-----TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSS 163 (164)
Q Consensus 94 ~~~~vRqRk~~~-----~~s~r~~~~g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~~~~~ 163 (164)
....+|||+... +.++|+++.++++++||||||||++||||+|++||||||+||++||+||||+||++..
T Consensus 13 ~~~~~Rqrk~~~~a~~~pa~~raaG~~~~t~~mlkfYTDda~GlKV~PvvVLvmSvgFIasV~~LHi~gK~~~~~ 87 (88)
T KOG3457|consen 13 ATAGRRQRKSGKEAGGGPASGRAAGAGGSTGGMLKFYTDDAPGLKVDPVVVLVMSVGFIASVFALHIWGKLTRSK 87 (88)
T ss_pred hHHHHHhccccccccCCccccCcCCCCCCCCceeEEeecCCCCceeCCeeehhhhHHHHHHHHHHHHHHHHhhcc
Confidence 455689998762 4567777777899999999999999999999999999999999999999999999865
No 2
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=99.71 E-value=1.2e-18 Score=112.76 Aligned_cols=41 Identities=51% Similarity=1.014 Sum_probs=25.4
Q ss_pred CCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhh
Q psy422 117 GSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 157 (164)
Q Consensus 117 ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~g 157 (164)
|++||||||+||++||||+|++||+++++||++|++||||+
T Consensus 1 Ssagl~r~y~ed~~giki~P~~Vl~~si~fi~~V~~Lhi~~ 41 (41)
T PF03911_consen 1 SSAGLLRYYEEDAPGIKIDPKTVLIISIAFIAIVILLHIFA 41 (41)
T ss_dssp ------------S-SS-BSCCHHHHHHHHHHHHHHHHT-SS
T ss_pred CCCcceeeeeccCCcceeCCeehHHHHHHHHHHHHHHhhhC
Confidence 57899999999999999999999999999999999999985
No 3
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=99.59 E-value=4e-16 Score=106.60 Aligned_cols=43 Identities=26% Similarity=0.449 Sum_probs=40.8
Q ss_pred CCCCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhh
Q psy422 115 GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 157 (164)
Q Consensus 115 g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~g 157 (164)
.-+++||+||||||.+||||+|++||+|+|+||++|++||+|.
T Consensus 10 ~~ssAGL~ryy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L~~~~ 52 (54)
T PRK01253 10 LMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNALF 52 (54)
T ss_pred CcccchhhhhhhcccCccccCCeeeeeeHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999999999999999999985
No 4
>KOG3457|consensus
Probab=99.45 E-value=3.9e-14 Score=105.27 Aligned_cols=45 Identities=40% Similarity=0.777 Sum_probs=35.6
Q ss_pred CCCCCcceeeccCC--C---CcccccCccCCCCccceEEeecCCCCeeee
Q psy422 23 GRPTGSTVRQRKPT--T---TTAARSNRTGAGSGGMWRYYTDDSPGIKVK 67 (164)
Q Consensus 23 ~~~~~~~~RrR~~~--~---~~s~~~~~~g~~~~~mlrfYTDdspGLKi~ 67 (164)
.++..+.+|||+.. + ..++|+++.++++++||||||||+||||||
T Consensus 10 ~a~~~~~~Rqrk~~~~a~~~pa~~raaG~~~~t~~mlkfYTDda~GlKV~ 59 (88)
T KOG3457|consen 10 GAAATAGRRQRKSGKEAGGGPASGRAAGAGGSTGGMLKFYTDDAPGLKVD 59 (88)
T ss_pred chhhHHHHHhccccccccCCccccCcCCCCCCCCceeEEeecCCCCceeC
Confidence 44455668888864 2 245666777899999999999999999999
No 5
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=98.44 E-value=1.2e-07 Score=66.11 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=37.1
Q ss_pred CccceeeeccCCCc-eeEeceeeehhhHHHHHHHHHHHhhh
Q psy422 118 SGGMWRYYTDDSPG-IKVGPVPVLVMSLLFIASVFMLHIWG 157 (164)
Q Consensus 118 s~gmlrfYtdds~G-lKV~P~~VLvmSl~FI~~V~lLHI~g 157 (164)
+.|+++||+||..+ |||||..|+.+++.|++.|++-||+.
T Consensus 15 ~AGLi~f~eEee~~~ikidP~~vV~~~~av~~lvi~A~~f~ 55 (57)
T COG4023 15 AAGLIRFFEEEEIKGIKIDPRLVVYAGIAVAILVIAAHIFA 55 (57)
T ss_pred ccceeeeecccccCCcccCchhhHHHHHHHHHHHHHHHHhc
Confidence 67899999988875 99999999999999999999999985
No 6
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=97.79 E-value=5.2e-06 Score=53.80 Aligned_cols=19 Identities=53% Similarity=1.148 Sum_probs=4.9
Q ss_pred CCccceEEeecCCCCeeee
Q psy422 49 GSGGMWRYYTDDSPGIKVK 67 (164)
Q Consensus 49 ~~~~mlrfYTDdspGLKi~ 67 (164)
++++|||||+||++|+||+
T Consensus 1 Ssagl~r~y~ed~~giki~ 19 (41)
T PF03911_consen 1 SSAGLLRYYEEDAPGIKID 19 (41)
T ss_dssp ------------S-SS-BS
T ss_pred CCCcceeeeeccCCcceeC
Confidence 4678999999999999998
No 7
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=97.23 E-value=7.3e-05 Score=51.29 Aligned_cols=20 Identities=30% Similarity=0.753 Sum_probs=18.3
Q ss_pred CCCccceEEeecCCCCeeee
Q psy422 48 AGSGGMWRYYTDDSPGIKVK 67 (164)
Q Consensus 48 ~~~~~mlrfYTDdspGLKi~ 67 (164)
-++.+|||||+||.+|+||+
T Consensus 11 ~ssAGL~ryy~ed~~~iKi~ 30 (54)
T PRK01253 11 MSSAGLIRYFEEETEAIKID 30 (54)
T ss_pred cccchhhhhhhcccCccccC
Confidence 56678999999999999998
No 8
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=77.76 E-value=0.92 Score=32.12 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=23.3
Q ss_pred ccCCCceeEeceeeehhhHHHHHHHHH
Q psy422 126 TDDSPGIKVGPVPVLVMSLLFIASVFM 152 (164)
Q Consensus 126 tdds~GlKV~P~~VLvmSl~FI~~V~l 152 (164)
-|++||=-..|+.||+|++.|+.+-++
T Consensus 6 c~~~p~d~~~~lLiliis~~f~lI~~l 32 (61)
T PF06692_consen 6 CDSAPGDYSGPLLILIISFVFFLITSL 32 (61)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHhhh
Confidence 378899999999999999999887665
No 9
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=65.14 E-value=3.2 Score=29.18 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=14.8
Q ss_pred ccceEEeecCCCC-eeee
Q psy422 51 GGMWRYYTDDSPG-IKVK 67 (164)
Q Consensus 51 ~~mlrfYTDdspG-LKi~ 67 (164)
-|++|||.|+.++ +|||
T Consensus 16 AGLi~f~eEee~~~ikid 33 (57)
T COG4023 16 AGLIRFFEEEEIKGIKID 33 (57)
T ss_pred cceeeeecccccCCcccC
Confidence 4599999988875 9999
No 10
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=64.94 E-value=2 Score=29.74 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=27.0
Q ss_pred ccCCCceeEeceeeehhhHHHHHHHHHHHhhh
Q psy422 126 TDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 157 (164)
Q Consensus 126 tdds~GlKV~P~~VLvmSl~FI~~V~lLHI~g 157 (164)
..-+||+--.|+..++|.+.|++.+++|.|++
T Consensus 16 GkVaPGWGTtplM~~~m~lf~vfl~iiL~IyN 47 (52)
T PF00737_consen 16 GKVAPGWGTTPLMGVFMALFAVFLLIILEIYN 47 (52)
T ss_dssp T--BSTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567888899999999999999999999985
No 11
>CHL00066 psbH photosystem II protein H
Probab=62.87 E-value=4.2 Score=29.89 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=29.3
Q ss_pred eccCCCceeEeceeeehhhHHHHHHHHHHHhhh
Q psy422 125 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 157 (164)
Q Consensus 125 Ytdds~GlKV~P~~VLvmSl~FI~~V~lLHI~g 157 (164)
|..-+||+--.|+.-++|.|.+++.+++|.|++
T Consensus 30 yGkvapgWGTtp~Mgv~m~lf~vfl~iiLeiyN 62 (73)
T CHL00066 30 YGKVAPGWGTTPLMGVAMALFAVFLSIILEIYN 62 (73)
T ss_pred cCcccCCccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 455678999999999999999999999999985
No 12
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=61.48 E-value=4.6 Score=29.66 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=29.3
Q ss_pred eccCCCceeEeceeeehhhHHHHHHHHHHHhhh
Q psy422 125 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 157 (164)
Q Consensus 125 Ytdds~GlKV~P~~VLvmSl~FI~~V~lLHI~g 157 (164)
|..-+||+--.|+.-++|.|.+++.+++|.|+.
T Consensus 30 yGkvapgWGTtp~Mg~~m~lf~vfl~iileiyN 62 (73)
T PLN00055 30 YGKVAPGWGTTPLMGVAMALFAVFLSIILEIYN 62 (73)
T ss_pred cCcccCCccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 455678999999999999999999999999985
No 13
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=60.50 E-value=4.7 Score=28.97 Aligned_cols=34 Identities=26% Similarity=0.536 Sum_probs=29.5
Q ss_pred eccCCCceeEeceeeehhhHHHHHHHHHHHhhhc
Q psy422 125 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGK 158 (164)
Q Consensus 125 Ytdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK 158 (164)
|..-+||+--.|+.-++|.|.+++.+++|.|+..
T Consensus 18 yGKVaPGWGTTplMgv~m~Lf~vFl~iiLeIYNs 51 (64)
T PRK02624 18 YGKVVPGWGTTPVMAVFMVLFLVFLLIILQIYNQ 51 (64)
T ss_pred cCcccCCccchHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455789999999999999999999999999853
No 14
>PF11185 DUF2971: Protein of unknown function (DUF2971); InterPro: IPR021352 This bacterial family of proteins has no known function.
Probab=51.04 E-value=5.3 Score=26.49 Aligned_cols=17 Identities=35% Similarity=0.802 Sum_probs=15.7
Q ss_pred ceEEeecCCCCeeeecC
Q psy422 53 MWRYYTDDSPGIKVKSP 69 (164)
Q Consensus 53 mlrfYTDdspGLKi~mp 69 (164)
||+.|.|+.-|+-|...
T Consensus 1 mW~~Y~~~~~Gv~i~f~ 17 (90)
T PF11185_consen 1 MWRHYADNHKGVCIGFD 17 (90)
T ss_pred ChHHhCCCCceEEEEEc
Confidence 89999999999999975
No 15
>PF10679 DUF2491: Protein of unknown function (DUF2491); InterPro: IPR019621 This entry represents a family of bacterial uncharacterised proteins.
Probab=48.03 E-value=10 Score=32.28 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.5
Q ss_pred CCCccceEEeecCCCCeeeecC
Q psy422 48 AGSGGMWRYYTDDSPGIKVKSP 69 (164)
Q Consensus 48 ~~~~~mlrfYTDdspGLKi~mp 69 (164)
+.+..+.||||||.-=|.|-+.
T Consensus 61 g~g~~l~RfYtddd~~lQv~~~ 82 (212)
T PF10679_consen 61 GQGSTLHRFYTDDDGFLQVVTD 82 (212)
T ss_pred CCCcEEEEEEeCCCcEEEEEcc
Confidence 4567899999999887877743
No 16
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=46.51 E-value=11 Score=31.86 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=23.9
Q ss_pred eeeeccCCCceeEeceeeehhhHHHHHHHHHHHhh
Q psy422 122 WRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW 156 (164)
Q Consensus 122 lrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~ 156 (164)
+.||++++.-||+ ...|++++.|++||++|-++
T Consensus 72 ~~~~~~v~~rlk~--t~lI~~alAfl~Cv~~Lv~Y 104 (186)
T PF06387_consen 72 ISFTEEVSERLKV--TRLIAFALAFLGCVVFLVMY 104 (186)
T ss_pred eccCcccccccch--hHHHHHHHHHHHHHHHHHhh
Confidence 3566777665555 45677899999999888655
No 17
>PTZ00234 variable surface protein Vir12; Provisional
Probab=43.70 E-value=1.1e+02 Score=28.76 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.1
Q ss_pred ehhhHHHHHHHHHHHhhhcccc
Q psy422 140 LVMSLLFIASVFMLHIWGKYTR 161 (164)
Q Consensus 140 LvmSl~FI~~V~lLHI~gK~~~ 161 (164)
+||.+.-|+.||+|-.+.+-.+
T Consensus 367 iim~~ailGtifFlfyyn~ss~ 388 (433)
T PTZ00234 367 SIVGASIIGVLVFLFFFFKSTP 388 (433)
T ss_pred HHHHHHHHHHHHHhhhhhcccc
Confidence 7899999999999988776554
No 18
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.94 E-value=16 Score=25.67 Aligned_cols=19 Identities=21% Similarity=0.572 Sum_probs=13.8
Q ss_pred eeehhhHHHHHHHHHHHhhhc
Q psy422 138 PVLVMSLLFIASVFMLHIWGK 158 (164)
Q Consensus 138 ~VLvmSl~FI~~V~lLHI~gK 158 (164)
.+++|.|+||++|+ |++.+
T Consensus 14 ~t~~~~l~fiavi~--~ayr~ 32 (60)
T COG4736 14 GTIAFTLFFIAVIY--FAYRP 32 (60)
T ss_pred HHHHHHHHHHHHHH--HHhcc
Confidence 46789999999876 44544
No 19
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=33.44 E-value=38 Score=22.98 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=11.5
Q ss_pred eeehhhHHHHHHHHHHHhh
Q psy422 138 PVLVMSLLFIASVFMLHIW 156 (164)
Q Consensus 138 ~VLvmSl~FI~~V~lLHI~ 156 (164)
.+|++++.||..|+.+-|+
T Consensus 3 ~~~iV~i~iv~~lLg~~I~ 21 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSIC 21 (50)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 4566677776666655444
No 20
>KOG2678|consensus
Probab=33.02 E-value=27 Score=30.74 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=16.2
Q ss_pred eeehhhHHHHHHHHHHHhhhcc
Q psy422 138 PVLVMSLLFIASVFMLHIWGKY 159 (164)
Q Consensus 138 ~VLvmSl~FI~~V~lLHI~gK~ 159 (164)
.+|+|.++||.-|+++.|+-|+
T Consensus 222 miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 222 MIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3456667778888888888775
No 21
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=28.27 E-value=21 Score=29.96 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHHh
Q psy422 142 MSLLFIASVFMLHI 155 (164)
Q Consensus 142 mSl~FI~~V~lLHI 155 (164)
+.++||+.|+++-|
T Consensus 237 v~~~Fi~mvl~iri 250 (251)
T PF09753_consen 237 VIIVFIMMVLFIRI 250 (251)
T ss_pred HHHHHHHHHHHhee
Confidence 33344444444433
No 22
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=27.83 E-value=16 Score=30.05 Aligned_cols=43 Identities=21% Similarity=0.604 Sum_probs=23.6
Q ss_pred cceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhhcccccC
Q psy422 120 GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSS 163 (164)
Q Consensus 120 gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~~~~~ 163 (164)
+.+|||..+.+.--+- ..++++...+|..++..|+|+++.+.+
T Consensus 129 ~WIKF~~~~~~~aa~~-~t~i~~~~~li~~~~~~~~wr~l~~~~ 171 (175)
T PF07856_consen 129 GWIKFWDSPSPAAAIA-ITAILVPVLLIFVVFIQHFWRSLVSHK 171 (175)
T ss_pred HheeehhccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568888733322211 122223333444458889999987654
No 23
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=26.38 E-value=47 Score=26.17 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=12.7
Q ss_pred ehhhHHHHHHHHHHHhhhc
Q psy422 140 LVMSLLFIASVFMLHIWGK 158 (164)
Q Consensus 140 LvmSl~FI~~V~lLHI~gK 158 (164)
+++++.||+..++|-|++|
T Consensus 17 ~~FA~L~i~~FiILLIi~~ 35 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITK 35 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766654
No 24
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=26.30 E-value=29 Score=26.70 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.7
Q ss_pred eeeccCCCceeEeceeeehhhHHHHHHHHHHHhhhccc
Q psy422 123 RYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT 160 (164)
Q Consensus 123 rfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~~ 160 (164)
.-|++++. +-..=+.++.+.++|+..||.|-|+.+|.
T Consensus 12 ~CY~~~~d-~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~ 48 (97)
T PF04834_consen 12 DCYDKKSD-MPNYWLYAIGIVLVFCSTFFSLAIYPCFD 48 (97)
T ss_pred hhcccCCC-CCHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 34554433 55566677778888999999999988875
No 25
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.23 E-value=42 Score=25.73 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=22.0
Q ss_pred eeeccCCCceeEeceeeehhhHHHHHHHHHHHhh
Q psy422 123 RYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW 156 (164)
Q Consensus 123 rfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~ 156 (164)
..|..+-++|-|. .+++.++||..|++--+-
T Consensus 24 ~~~~n~~~~Lgm~---~lvI~~iFil~VilwfvC 54 (94)
T PF05393_consen 24 SMFVNNWPNLGMW---FLVICGIFILLVILWFVC 54 (94)
T ss_pred EeecCCCCccchh---HHHHHHHHHHHHHHHHHH
Confidence 4466677788875 788888888888765443
No 26
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=25.28 E-value=67 Score=25.11 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=22.3
Q ss_pred cceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhhcc
Q psy422 120 GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY 159 (164)
Q Consensus 120 gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~ 159 (164)
+||-.|+-.+. ++.+-+.=+=.+.=.++|.+||.|.|-
T Consensus 49 ~~Lviyclk~v--~~~~~~~Gipei~a~~~V~~Lh~wkkn 86 (106)
T COG1687 49 GMLVIYCLKDV--AILLGPHGIPEILAAAIVAALHLWKKN 86 (106)
T ss_pred HHHHHHHHccc--eeccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 44555554443 333333334445556789999999874
No 27
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=23.84 E-value=18 Score=28.96 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=20.3
Q ss_pred eeEeceeeehhhHHHHHHHHHHHh
Q psy422 132 IKVGPVPVLVMSLLFIASVFMLHI 155 (164)
Q Consensus 132 lKV~P~~VLvmSl~FI~~V~lLHI 155 (164)
|-|+-++||++||..+.+|++|-|
T Consensus 63 ffvglii~LivSLaLVsFvIFLii 86 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLII 86 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhee
Confidence 457778999999999999998855
No 28
>PRK13892 conjugal transfer protein TrbC; Provisional
Probab=23.08 E-value=22 Score=28.81 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=30.5
Q ss_pred cceeeeccCCCce-eEeceeeehhhHHHHHHHHHHHhhhc
Q psy422 120 GMWRYYTDDSPGI-KVGPVPVLVMSLLFIASVFMLHIWGK 158 (164)
Q Consensus 120 gmlrfYtdds~Gl-KV~P~~VLvmSl~FI~~V~lLHI~gK 158 (164)
.+|- |.||..|+ |=-=++||+++++|-+.-|++-++++
T Consensus 75 ~~La-FGge~~gf~R~li~vVl~lsi~~~A~n~~~~ffg~ 113 (134)
T PRK13892 75 GILI-FGGELNGFFRTLIFIVLVMALLVGAQNMMSTFFGR 113 (134)
T ss_pred hHhh-cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444 47777887 77788999999999999999988754
No 29
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=22.68 E-value=66 Score=27.73 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=25.0
Q ss_pred eeeccCCCceeEeceeeehhhHHHHHHHHHHHhhhcc
Q psy422 123 RYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY 159 (164)
Q Consensus 123 rfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~ 159 (164)
++|.|.. ||.+.-.+-|.+||+.|..-++--|+-|+
T Consensus 88 ~~~g~t~-Glavh~~iTITvSlImViaAliTtlvlK~ 123 (205)
T PF15298_consen 88 RIFGDTS-GLAVHQIITITVSLIMVIAALITTLVLKN 123 (205)
T ss_pred cccCCCC-CCCceEEEEEeeehhHHHHHhhhhhhhhh
Confidence 4555554 89888888888888776666555555554
No 30
>PF14341 PilX_N: PilX N-terminal
Probab=22.45 E-value=69 Score=21.03 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=12.6
Q ss_pred eehhhHHHHHHHHHHHhh
Q psy422 139 VLVMSLLFIASVFMLHIW 156 (164)
Q Consensus 139 VLvmSl~FI~~V~lLHI~ 156 (164)
+|+++|+|+..+.+|-+.
T Consensus 4 aLvvaLi~l~vltll~~~ 21 (51)
T PF14341_consen 4 ALVVALIILLVLTLLGVA 21 (51)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 577788887777766443
No 31
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=22.34 E-value=76 Score=25.22 Aligned_cols=19 Identities=42% Similarity=0.796 Sum_probs=15.4
Q ss_pred eehhhHHHHHHHHHHHhhh
Q psy422 139 VLVMSLLFIASVFMLHIWG 157 (164)
Q Consensus 139 VLvmSl~FI~~V~lLHI~g 157 (164)
|-|+|+.+++..++-|||=
T Consensus 22 vsvisffllayllmahiwl 40 (138)
T PF05663_consen 22 VSVISFFLLAYLLMAHIWL 40 (138)
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 5678888888888889994
No 32
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=22.28 E-value=57 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.615 Sum_probs=14.3
Q ss_pred eehhhHHHHHHHHHHHhh
Q psy422 139 VLVMSLLFIASVFMLHIW 156 (164)
Q Consensus 139 VLvmSl~FI~~V~lLHI~ 156 (164)
.+.+=+.||.++.+||++
T Consensus 27 i~~~LilfviF~~~L~~y 44 (83)
T PF05814_consen 27 IITLLILFVIFFCVLQVY 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455667888889999996
No 33
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=21.38 E-value=71 Score=25.60 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=9.3
Q ss_pred eeeeccCCCceeEe
Q psy422 122 WRYYTDDSPGIKVG 135 (164)
Q Consensus 122 lrfYtdds~GlKV~ 135 (164)
|-|=+||+..++..
T Consensus 25 W~fR~ED~tpWNys 38 (125)
T PF15048_consen 25 WFFRVEDATPWNYS 38 (125)
T ss_pred HheecCCCCCcchH
Confidence 34556888877764
No 34
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.71 E-value=88 Score=19.98 Aligned_cols=19 Identities=21% Similarity=0.604 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHhhhcc
Q psy422 141 VMSLLFIASVFMLHIWGKY 159 (164)
Q Consensus 141 vmSl~FI~~V~lLHI~gK~ 159 (164)
++++++|++++++=|++.+
T Consensus 19 ~~gl~il~~~vl~ai~~p~ 37 (56)
T PF12911_consen 19 VIGLIILLILVLLAIFAPF 37 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555666555543
No 35
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=20.62 E-value=60 Score=22.16 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=18.8
Q ss_pred eEEeecCCCCeeeecCCCCCccccC
Q psy422 54 WRYYTDDSPGIKVKSPAPASSTSVG 78 (164)
Q Consensus 54 lrfYTDdspGLKi~mp~~~sst~vg 78 (164)
+.+|.||+.||+.++|.-=..-.||
T Consensus 5 v~~~~~~~~GL~~gs~V~~~Gv~VG 29 (81)
T PF02470_consen 5 VTVYFDDAGGLSVGSPVRYRGVEVG 29 (81)
T ss_pred EEEEECCcCCCCCcCEEEECCEEEE
Confidence 5678899999999988664554554
No 36
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.22 E-value=1.1e+02 Score=20.47 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=11.6
Q ss_pred eeehhhHHHHHHHHHH
Q psy422 138 PVLVMSLLFIASVFML 153 (164)
Q Consensus 138 ~VLvmSl~FI~~V~lL 153 (164)
++||+.|+||+.+.++
T Consensus 10 VIlVF~lVglv~i~iv 25 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIV 25 (43)
T ss_pred eeeehHHHHHHHHHHH
Confidence 5678888888776554
Done!