Query psy422
Match_columns 164
No_of_seqs 162 out of 221
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 19:54:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_C SEC61BETA, protein tran 100.0 4.3E-33 1.5E-37 208.0 1.1 94 68-162 1-96 (96)
2 2ww9_C Protein transport prote 99.9 8.6E-25 3E-29 160.8 -0.1 54 107-160 32-85 (87)
3 1rh5_C Secbeta; protein transl 99.5 6.9E-16 2.4E-20 104.2 1.3 42 115-156 9-50 (53)
4 2wwb_C SEC61BETA, protein tran 99.5 3.1E-15 1.1E-19 111.7 0.5 66 1-67 2-69 (96)
5 2ww9_C Protein transport prote 98.7 1.1E-09 3.9E-14 80.4 -0.0 29 39-67 32-60 (87)
6 1rh5_C Secbeta; protein transl 97.4 2.8E-05 9.4E-10 52.3 0.7 20 48-67 10-29 (53)
7 3arc_H Photosystem II reaction 61.8 1.7 5.9E-05 30.2 0.1 34 125-158 17-50 (65)
8 1lgh_A LH II, B800/850, light 25.5 20 0.0007 24.0 0.7 25 132-156 11-36 (56)
9 1jb0_I Photosystem 1 reaction 17.0 42 0.0014 20.9 0.8 19 136-155 16-34 (38)
10 2ofc_A Sclerotium rolfsii lect 14.4 65 0.0022 25.2 1.4 16 46-61 46-61 (142)
No 1
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=99.97 E-value=4.3e-33 Score=208.01 Aligned_cols=94 Identities=68% Similarity=1.124 Sum_probs=35.0
Q ss_pred cCCC-CCccccCCCCCCCCCCCCCCCCCCcccccccCCC-CCccccCCCCCCCccceeeeccCCCceeEeceeeehhhHH
Q psy422 68 SPAP-ASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTT-TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLL 145 (164)
Q Consensus 68 mp~~-~sst~vg~~grsp~~~~~~~~~~~~~vRqRk~~~-~~s~r~~~~g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~ 145 (164)
||++ +|+|+|++++++|.+.+.+ +++++++||||.++ .++.+.++.+++++|||||||||++||||+|++||+|+|+
T Consensus 1 m~~~~~s~t~vg~~~~~p~~~a~~-~~~g~~~r~Rr~~~~~~~~~~~~~~~SsaGllRfY~dds~GlKV~P~~VLv~sl~ 79 (96)
T 2wwb_C 1 MPGPTPSGTNVGSSGRSPSKAVAA-RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLL 79 (96)
T ss_dssp -------------------------------------------------------------CCSCCCCCSSCSHHHHHHH
T ss_pred CCCcccCccccccCCCCCCccccc-ccCCcceEecccCCCccCCCCCCCCCCCcceeeeeecCCCceEECCEEehhhHHH
Confidence 7876 7999999999999887765 33556799999765 4455667778899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccc
Q psy422 146 FIASVFMLHIWGKYTRS 162 (164)
Q Consensus 146 FI~~V~lLHI~gK~~~~ 162 (164)
||++||+||||+||+|.
T Consensus 80 Fi~~Vi~Lhi~~K~~r~ 96 (96)
T 2wwb_C 80 FIASVFMLHIWGKYTRS 96 (96)
T ss_dssp HHHHHHHHSCSSSCCCC
T ss_pred HHHHHHHHHHhhhhccC
Confidence 99999999999999874
No 2
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=99.89 E-value=8.6e-25 Score=160.80 Aligned_cols=54 Identities=37% Similarity=0.613 Sum_probs=21.0
Q ss_pred CccccCCCCCCCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhhccc
Q psy422 107 TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT 160 (164)
Q Consensus 107 ~s~r~~~~g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~~ 160 (164)
.++++++.+++++||||||+||++||||+|++||+|+|+||++||+||||+||+
T Consensus 32 ~s~~~~~~ggss~gllrfYtdds~GlKV~P~~VLv~sl~FIa~VilLHI~gK~~ 85 (87)
T 2ww9_C 32 TSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85 (87)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHHHHC-------
T ss_pred CCCCCCCCCCCchhHHHHhhcCCCceEEcCeeehhhHHHHHHHHHHHHHhhhhc
Confidence 455666778899999999999999999999999999999999999999999997
No 3
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=99.55 E-value=6.9e-16 Score=104.19 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=29.3
Q ss_pred CCCCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhh
Q psy422 115 GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW 156 (164)
Q Consensus 115 g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~ 156 (164)
..+++||+|||+||++||||+|++||+++++||++|++||+.
T Consensus 9 ~~ssaGLvryy~ee~~giKi~P~~Vl~~si~~i~~V~~L~~~ 50 (53)
T 1rh5_C 9 LATSAGLIRYMDETFSKIRVKPEHVIGVTVAFVIIEAILTYG 50 (53)
T ss_dssp ------------CCCCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccchhhhhccCCccccCCeehhhhHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999985
No 4
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=99.49 E-value=3.1e-15 Score=111.68 Aligned_cols=66 Identities=55% Similarity=0.917 Sum_probs=8.9
Q ss_pred CCC-CCCCccCCCCCCCCCCCCCCCCCCcceeeccCCC-CcccccCccCCCCccceEEeecCCCCeeee
Q psy422 1 PAP-ASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTT-TTAARSNRTGAGSGGMWRYYTDDSPGIKVK 67 (164)
Q Consensus 1 ~~~-~sst~v~~~~rs~~~~~~~~~~~~~~~RrR~~~~-~~s~~~~~~g~~~~~mlrfYTDdspGLKi~ 67 (164)
|++ +|+|+|++++++|..... +...++++||||.++ +.+.+.++.++++++|||||+||+|||||+
T Consensus 2 ~~~~~s~t~vg~~~~~p~~~a~-~~~~g~~~r~Rr~~~~~~~~~~~~~~~SsaGllRfY~dds~GlKV~ 69 (96)
T 2wwb_C 2 PGPTPSGTNVGSSGRSPSKAVA-ARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVG 69 (96)
T ss_dssp ------------------------------------------------------------CCSCCCCCS
T ss_pred CCcccCccccccCCCCCCcccc-cccCCcceEecccCCCccCCCCCCCCCCCcceeeeeecCCCceEEC
Confidence 344 899999999888874411 111455799999654 345556677889999999999999999999
No 5
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=98.73 E-value=1.1e-09 Score=80.43 Aligned_cols=29 Identities=31% Similarity=0.610 Sum_probs=2.8
Q ss_pred cccccCccCCCCccceEEeecCCCCeeee
Q psy422 39 TAARSNRTGAGSGGMWRYYTDDSPGIKVK 67 (164)
Q Consensus 39 ~s~~~~~~g~~~~~mlrfYTDdspGLKi~ 67 (164)
.+.+++++|+++++||||||||+|||||+
T Consensus 32 ~s~~~~~~ggss~gllrfYtdds~GlKV~ 60 (87)
T 2ww9_C 32 TSTRQAGYGGSSSSILKLYTDEANGFRVD 60 (87)
T ss_dssp --------------------------CCC
T ss_pred CCCCCCCCCCCchhHHHHhhcCCCceEEc
Confidence 34556678889999999999999999998
No 6
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=97.43 E-value=2.8e-05 Score=52.26 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=8.7
Q ss_pred CCCccceEEeecCCCCeeee
Q psy422 48 AGSGGMWRYYTDDSPGIKVK 67 (164)
Q Consensus 48 ~~~~~mlrfYTDdspGLKi~ 67 (164)
.++.||||||+||++|+||+
T Consensus 10 ~ssaGLvryy~ee~~giKi~ 29 (53)
T 1rh5_C 10 ATSAGLIRYMDETFSKIRVK 29 (53)
T ss_dssp -----------CCCCSCCCC
T ss_pred cccccchhhhhccCCccccC
Confidence 56678999999999999998
No 7
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=61.82 E-value=1.7 Score=30.25 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=29.0
Q ss_pred eccCCCceeEeceeeehhhHHHHHHHHHHHhhhc
Q psy422 125 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGK 158 (164)
Q Consensus 125 Ytdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK 158 (164)
|..-+||+--.|+..++|.|.|++.+++|.|+..
T Consensus 17 yGKvaPGWGTtplMgv~m~Lf~vFl~iiLeIYNs 50 (65)
T 3arc_H 17 YGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNS 50 (65)
T ss_dssp TTCCBSTTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcccCCccChhHHHHHHHHHHHHHHHHHHHhCc
Confidence 4445788888999999999999999999999853
No 8
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=25.48 E-value=20 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=18.1
Q ss_pred eeEeceeeehhhHHHHHHHHH-HHhh
Q psy422 132 IKVGPVPVLVMSLLFIASVFM-LHIW 156 (164)
Q Consensus 132 lKV~P~~VLvmSl~FI~~V~l-LHI~ 156 (164)
+-|+|..+|+.-++|++++-+ .|++
T Consensus 11 lvvdP~~~L~~l~~~v~vlAllIH~~ 36 (56)
T 1lgh_A 11 LVINPSTWLPVIWIVATVVAIAVHAA 36 (56)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCceeHHHHHHHHHHHHHHHHHH
Confidence 347888888888888776544 4765
No 9
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=16.96 E-value=42 Score=20.94 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=12.3
Q ss_pred ceeeehhhHHHHHHHHHHHh
Q psy422 136 PVPVLVMSLLFIASVFMLHI 155 (164)
Q Consensus 136 P~~VLvmSl~FI~~V~lLHI 155 (164)
|++-|++..++|++.| +||
T Consensus 16 PlVglvfPai~Mallf-~yI 34 (38)
T 1jb0_I 16 PVVCWLMPTVVMGLLF-LYI 34 (38)
T ss_dssp HHHHTHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHHHHHHHH-Hhh
Confidence 5666677777777665 455
No 10
>2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A*
Probab=14.41 E-value=65 Score=25.22 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=12.5
Q ss_pred cCCCCccceEEeecCC
Q psy422 46 TGAGSGGMWRYYTDDS 61 (164)
Q Consensus 46 ~g~~~~~mlrfYTDds 61 (164)
.|.++.+||||-+|..
T Consensus 46 ggSGTSG~LRf~~~~G 61 (142)
T 2ofc_A 46 GGSGTSGTLRFHADNG 61 (142)
T ss_dssp SSSSCEEEEEEEETTS
T ss_pred cCCCcceeEEEecCCC
Confidence 3567889999999854
Done!