Query psy422
Match_columns 164
No_of_seqs 162 out of 221
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 19:54:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy422.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/422hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axth1 f.23.33.1 (H:2-65) Pho 50.7 1.9 0.00014 28.3 0.5 34 125-158 17-50 (64)
2 d1rh5c_ f.23.29.1 (C:) Sec-bet 46.4 3.4 0.00025 23.4 1.1 25 130-154 4-28 (32)
3 d1ojta2 c.3.1.5 (A:276-400) Di 22.2 7.8 0.00057 26.2 -0.3 33 127-160 17-49 (125)
4 d1x99a_ b.97.1.2 (A:) Lectin x 21.0 23 0.0017 26.0 2.2 22 46-67 49-70 (145)
5 d1wxaa1 d.15.1.5 (A:8-110) Afa 16.9 22 0.0016 23.2 1.1 11 50-60 1-11 (103)
6 d1y2ta_ b.97.1.2 (A:) TF antig 16.2 28 0.0021 25.4 1.7 21 46-66 45-66 (142)
7 d2p0sa1 c.94.1.3 (A:48-183) Un 13.1 26 0.0019 24.4 0.7 14 53-66 62-75 (136)
8 d1ppjd2 f.23.11.1 (D:196-241) 12.3 43 0.0031 19.8 1.4 22 139-160 14-36 (46)
9 d1v54d_ f.23.1.1 (D:) Mitochon 11.8 40 0.0029 24.3 1.4 23 137-159 76-98 (144)
10 d1w85b1 c.36.1.7 (B:1-192) Pyr 10.4 34 0.0025 25.4 0.6 22 50-72 129-150 (192)
No 1
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=50.72 E-value=1.9 Score=28.30 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=29.3
Q ss_pred eccCCCceeEeceeeehhhHHHHHHHHHHHhhhc
Q psy422 125 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGK 158 (164)
Q Consensus 125 Ytdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK 158 (164)
|..-+||+--.|+.-++|.|.+++.+++|.|+..
T Consensus 17 yGKVaPGWGTTplMgv~m~Lf~vfl~iiLeiYNs 50 (64)
T d2axth1 17 YGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNS 50 (64)
T ss_dssp SSCCCSTTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcccCCcCccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556788888999999999999999999999864
No 2
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=46.35 E-value=3.4 Score=23.42 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=20.9
Q ss_pred CceeEeceeeehhhHHHHHHHHHHH
Q psy422 130 PGIKVGPVPVLVMSLLFIASVFMLH 154 (164)
Q Consensus 130 ~GlKV~P~~VLvmSl~FI~~V~lLH 154 (164)
.-|+|.|.+|+-+.+.|+.+..+|.
T Consensus 4 skirvkpehvigvtvafviieailt 28 (32)
T d1rh5c_ 4 SKIRVKPEHVIGVTVAFVIIEAILT 28 (32)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeccceEEEEEEehhhHHHHHh
Confidence 3589999999999999988777663
No 3
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=22.16 E-value=7.8 Score=26.21 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=26.9
Q ss_pred cCCCceeEeceeeehhhHHHHHHHHHHHhhhccc
Q psy422 127 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT 160 (164)
Q Consensus 127 dds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~~ 160 (164)
||.--++--|..|+|+--+||++.|. +++.++.
T Consensus 17 ~~~l~l~~~p~~vvIiGgG~IG~E~A-~~~~~~G 49 (125)
T d1ojta2 17 SGALALKEVPGKLLIIGGGIIGLEMG-TVYSTLG 49 (125)
T ss_dssp HHHTTCCCCCSEEEEESCSHHHHHHH-HHHHHHT
T ss_pred HHhhCccccCCeEEEECCCHHHHHHH-HHhhcCC
Confidence 55566777899999999999999997 7776653
No 4
>d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId: 5386]}
Probab=20.98 E-value=23 Score=25.99 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=15.8
Q ss_pred cCCCCccceEEeecCCCCeeee
Q psy422 46 TGAGSGGMWRYYTDDSPGIKVK 67 (164)
Q Consensus 46 ~g~~~~~mlrfYTDdspGLKi~ 67 (164)
.|.++++||||-++..--+-|-
T Consensus 49 ggSGTSGmLRF~~~~Ge~F~Va 70 (145)
T d1x99a_ 49 GGSGTSGMLRFMSTKGERITVA 70 (145)
T ss_dssp SSTTCEEEEEEEETTCCEEEEE
T ss_pred cCCCCceeEEEEcCCCCEEEEE
Confidence 3467889999999776555444
No 5
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.86 E-value=22 Score=23.18 Aligned_cols=11 Identities=55% Similarity=0.960 Sum_probs=9.2
Q ss_pred CccceEEeecC
Q psy422 50 SGGMWRYYTDD 60 (164)
Q Consensus 50 ~~~mlrfYTDd 60 (164)
+||+||+|.++
T Consensus 1 ~gG~lkVy~~~ 11 (103)
T d1wxaa1 1 SGGTLRIYADS 11 (103)
T ss_dssp CCCEEEECCTT
T ss_pred CCcEEEEEcCc
Confidence 57899999975
No 6
>d1y2ta_ b.97.1.2 (A:) TF antigen-binding lectin {Common mushroom (Agaricus bisporus) [TaxId: 5341]}
Probab=16.19 E-value=28 Score=25.40 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=14.7
Q ss_pred cCCCCccceEEeecCCC-Ceee
Q psy422 46 TGAGSGGMWRYYTDDSP-GIKV 66 (164)
Q Consensus 46 ~g~~~~~mlrfYTDdsp-GLKi 66 (164)
.|.++.+||||=+.+.- -+-|
T Consensus 45 ggSGTSGmLRF~~~~g~e~F~V 66 (142)
T d1y2ta_ 45 GGSGTSGSLRFVSSDTDESFVA 66 (142)
T ss_dssp SSSSCEEEEEEEETTTTEEEEE
T ss_pred ccCCCceeEEEEeCCCCcEEEE
Confidence 34678899999887763 4444
No 7
>d2p0sa1 c.94.1.3 (A:48-183) Uncharacterized protein PG0945 {Porphyromonas gingivalis [TaxId: 837]}
Probab=13.12 E-value=26 Score=24.37 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=11.8
Q ss_pred ceEEeecCCCCeee
Q psy422 53 MWRYYTDDSPGIKV 66 (164)
Q Consensus 53 mlrfYTDdspGLKi 66 (164)
=+.||++++|++.+
T Consensus 62 ~i~fyS~~sps~s~ 75 (136)
T d2p0sa1 62 AVAIYGYKQLPASV 75 (136)
T ss_dssp SEEEEESSCCCHHH
T ss_pred ceEEEEcCCCCHhH
Confidence 48999999999864
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.26 E-value=43 Score=19.84 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=10.8
Q ss_pred eehhhHHHHHHHHHH-Hhhhccc
Q psy422 139 VLVMSLLFIASVFML-HIWGKYT 160 (164)
Q Consensus 139 VLvmSl~FI~~V~lL-HI~gK~~ 160 (164)
++++++.++.+.+.= |+|..+.
T Consensus 14 ~~~l~~l~~l~yy~KR~~Ws~lK 36 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRHKWSVLK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Confidence 344444433333332 8887664
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.80 E-value=40 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred eeeehhhHHHHHHHHHHHhhhcc
Q psy422 137 VPVLVMSLLFIASVFMLHIWGKY 159 (164)
Q Consensus 137 ~~VLvmSl~FI~~V~lLHI~gK~ 159 (164)
..|+...++||++-++|++|-+.
T Consensus 76 K~v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888654
No 10
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.45 E-value=34 Score=25.40 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=15.8
Q ss_pred CccceEEeecCCCCeeeecCCCC
Q psy422 50 SGGMWRYYTDDSPGIKVKSPAPA 72 (164)
Q Consensus 50 ~~~mlrfYTDdspGLKi~mp~~~ 72 (164)
++.+..+|..- |||||-||..|
T Consensus 129 Sqs~e~~f~~~-PGlkVv~Ps~p 150 (192)
T d1w85b1 129 SDSLEGLVAQQ-PGLKVVIPSTP 150 (192)
T ss_dssp SCCCHHHHTTS-TTCEEECCSSH
T ss_pred ccCHHHHhhcC-CCeeEEeeCCH
Confidence 45566666644 99999999753
Done!