BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4221
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
GRRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 62
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS V F Y Q DEL L+ GD+I + GWWEG+L + GMFP NF++
Sbjct: 3 SGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIK 60
Query: 88 VL 89
L
Sbjct: 61 EL 62
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 85.5 bits (210), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
GR+C+VLF Y+P N DELEL V DVIDV+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 4 GRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKEL 59
Score = 50.4 bits (119), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
GS + V FDY+ Q DEL L GD+I I GWW G L N+ G+FP NFV+
Sbjct: 1 GSMGRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTL--NNKLGLFPSNFVKE 58
Query: 89 L 89
L
Sbjct: 59 L 59
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
C+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+ ++
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGES 77
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
V F Y Q DEL L+ GD+I + GWWEG+L + GMFP NF++ L +
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKELSGESD 78
Query: 95 ETQVA 99
E ++
Sbjct: 79 ELGIS 83
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 80.5 bits (197), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 8 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62
Score = 47.8 bits (112), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
GS + V F+Y Q DEL L+ GD+I GWW G L N+ G+FP NFV+
Sbjct: 4 GSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKE 61
Query: 89 L 89
L
Sbjct: 62 L 62
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 78.6 bits (192), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
Score = 46.2 bits (108), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ V F+Y Q DEL L+ GD+I GWW G L N+ G+FP NFV+
Sbjct: 3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVK 54
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 70.9 bits (172), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/56 (60%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
++EA VEFDY AQ DELT+ G++IT IR + GGWWEG + RRG+FPDNFVR
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQI--NGRRGLFPDNFVR 54
Score = 47.0 bits (110), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
V F Y + DEL + V ++I + + + GWW G++ R G+FP NFV EI
Sbjct: 6 VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 66.6 bits (161), Expect = 8e-12, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+C+ L++Y + DEL + ND+ID++ E GWW GRLR + G+FP+N+V +I
Sbjct: 7 QCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
Score = 45.4 bits (106), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+ Y AQ+ DEL+ D+I I+ GWW G L ++G+FP+N+V
Sbjct: 12 YAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL--RGKQGLFPNNYV 57
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
GR C+ L+S+ DEL L D++ + + EEGWW G L + G FP+ +VEE+P++
Sbjct: 7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNA 66
Query: 165 MTAESR 170
++
Sbjct: 67 GNTATK 72
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS + + A++ DEL L KGD++ + GWW G L ++G FP +V
Sbjct: 3 SGSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVE 60
Query: 88 VLGEAAAET 96
L A T
Sbjct: 61 ELPSNAGNT 69
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 40 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQVA 99
DY E+ L GD++ + GWW + +RG P +F+ L ++ ET+
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLEPL-DSPDETEDP 75
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++++
Sbjct: 76 EPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
Query: 160 IPADTMTAE 168
D A+
Sbjct: 136 SGQDVSQAQ 144
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E +
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 66
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 40 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQVA 99
DY E+ L GD++ + GWW + +RG P +F+ L ++ ET+
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLEPL-DSPDETEDP 75
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++++
Sbjct: 76 EPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
Query: 160 IPADTMTAE 168
D A+
Sbjct: 136 SGQDVSQAQ 144
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E +
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 66
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 40 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQVA 99
DY E+ L GD++ + GWW + +RG P +F+ L ++ ET+
Sbjct: 18 DYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLEPL-DSPDETEDP 74
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++++
Sbjct: 75 EPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 134
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI--PAD 163
+ R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + P +
Sbjct: 11 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 70
Query: 164 TMTAESRHRKE 174
T E + E
Sbjct: 71 TEDPEPNYAGE 81
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 40 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQVA 99
DY E+ L GD++ + GWW + +RG P +F+ L ++ ET+
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLEPL-DSPDETEDP 75
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS ++++
Sbjct: 76 EPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 135
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI--PAD 163
+ R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + P +
Sbjct: 12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
Query: 164 TMTAESRHRKE 174
T E + E
Sbjct: 72 TEDPEPNYAGE 82
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 101 RKKPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVE 158
R K C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+
Sbjct: 5 RTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
Query: 159 EIPAD 163
+P D
Sbjct: 65 LLPPD 69
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIR--VQSGGWWEGLLVRENRRGMFPDNFVRVL 89
V F Y AQ DELT+++GD++T I GWWEG L RRG+FPDNFV++L
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL 66
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIR--VQSGGWWEGLLVRENRRGMFPDNF 85
+GSS V F Y AQ DELT+++GD++T I GWWEG L RRG+FPDNF
Sbjct: 3 SGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNF 60
Query: 86 VRVL 89
V++L
Sbjct: 61 VKLL 64
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVE 158
G C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+
Sbjct: 7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 57.0 bits (136), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQ--SGGWWEGLLVRENRRGMFPDNFVRVL 89
V F Y AQ DELT+++GD++T I GWWEG L RRG+FPDNFV++L
Sbjct: 8 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL 60
Score = 57.0 bits (136), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 161
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 6 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 61
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 77 RRGMFPDNFVRVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEV 136
++G FP + V++LG ++ A P + ++ Y N DEL +I+V+++
Sbjct: 8 QKGWFPASHVKLLGPSSERATPAFH--PVCQVIAMYDYAANNEDELSFSKGQLINVMNKD 65
Query: 137 EEGWWRGRLRDRTGVFPSNFVE 158
+ WW+G + TG+FPSN+V+
Sbjct: 66 DPDWWQGEINGVTGLFPSNYVK 87
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 16 QAKELSPS--RCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV 73
K L PS R A V + +DY A DEL+ KG LI + WW+G +
Sbjct: 16 HVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI- 74
Query: 74 RENRRGMFPDNFVRVLGEAAAET 96
G+FP N+V++ +++ +
Sbjct: 75 -NGVTGLFPSNYVKMTTDSSGPS 96
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIR--VQSGGWWEGLLVRENRRGMFPDNFVRVL 89
V F Y AQ DELT+++GD++T I GWWEG L RRG+FPDNFV++L
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL 59
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 161
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
G L+ + P ++LE+ D+I +L + E WW+G+++DR G FP+NFV+ +
Sbjct: 7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS + + QE ++L +R GD+IT + + WW+G + ++R G FP NFV+
Sbjct: 3 SGSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKI--QDRIGFFPANFVQ 60
Query: 88 VL 89
L
Sbjct: 61 RL 62
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
R F++ N DEL DVI V E GWW G L RTG FPSN+V E+ A
Sbjct: 11 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 38 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+F++ DEL+ KGD+I RV+ GGWWEG L R G FP N+VR
Sbjct: 14 KFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTL--NGRTGWFPSNYVR 61
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 53.9 bits (128), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ QE+ EL ++GD+IT I WWEG L NRRG+FP N+V
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYV 54
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 53.9 bits (128), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ QE+ EL ++GD+IT I WWEG L NRRG+FP N+V
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYV 54
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 53.9 bits (128), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEI 160
CR LF YT N DEL ++I ++S+ E GWW+G L + GVFP NF +I
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRRGMFPDNF 85
F YT DELT R+G++I I ++G GWW+G L + G+FPDNF
Sbjct: 13 FPYTGTNEDELTFREGEIIHLISKETGEAGWWKGEL--NGKEGVFPDNF 59
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 53.5 bits (127), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ QE+ EL ++GD+IT I WWEG L NRRG+FP N+V
Sbjct: 11 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYV 56
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
+ LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 8 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 53.1 bits (126), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 37 VEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFVR 87
VE+DY A DELT+R G++I + ++Q GW EG L RRGMFPDNFV+
Sbjct: 5 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVK 54
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEI 160
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI
Sbjct: 5 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 56
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
F++ DEL++ KGD+I RV+ GGWWEG L R G FP N+VR
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL--NGRTGWFPSNYVR 63
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADTMTAES 169
F++ N DEL + D+I V E GWW G L RTG FPSN+V EI + + S
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPS 74
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
G CR L+ + P N EL D+I + ++++E W+ G L +G FP N+VE + A
Sbjct: 7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALP 66
Query: 165 MTAESR 170
+ S
Sbjct: 67 HSGPSS 72
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS +D+ + EL ++GD+IT W+EG+L G FP N+V
Sbjct: 3 SGSSGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGML--HGHSGFFPINYVE 60
Query: 88 VL 89
+L
Sbjct: 61 IL 62
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
G L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 70
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
I A +DY A DE++ D+IT I + GWW G V + R G+FP N+V +
Sbjct: 18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRG--VCKGRYGLFPANYVEL 71
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFVR 87
+++ VE+DY A DELT+R G++I + ++Q GW EG L RRGMFPDNFV+
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVK 55
Score = 43.5 bits (101), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPADT 164
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI +T
Sbjct: 6 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 92 AAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV 151
+A +Q+ +R K F++ N DEL DVI V E GWW G RTG
Sbjct: 1 GSANSQLVVRAK--------FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGW 52
Query: 152 FPSNFVEEI 160
FPSN+V EI
Sbjct: 53 FPSNYVREI 61
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ +S + +F++ DEL+ KGD+I RV+ GGWWEG R G FP N+VR
Sbjct: 2 SANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG--THNGRTGWFPSNYVR 59
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 51.6 bits (122), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 160
+ L+SY P N DELEL D++DV+ + ++GW+ G R + G FP N+V+ +
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+ Y Q DEL LR GD++ + GW+ G R + G FP N+V+ L
Sbjct: 13 YSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 31 SVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
SV+ A +F++ DEL+ KGD+I RV+ GGWWEG R G FP N+VR
Sbjct: 5 SVVRA--KFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG--THNGRTGWFPSNYVR 57
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
G R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 97 QVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNF 156
Q AM + L+ + +EL+ V D I +L+ +E+GW G L+ RTG+FP F
Sbjct: 5 QPAMAQGALTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRF 64
Query: 157 VEEIPA 162
V+ PA
Sbjct: 65 VKLCPA 70
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 51.2 bits (121), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 160
+ L+SY P N DELEL D++DV+ + ++GW+ G R + G FP N+V+ +
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+ Y Q DEL LR GD++ + GW+ G R + G FP N+V+ L
Sbjct: 13 YSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 51.2 bits (121), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 15 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
Score = 44.7 bits (104), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
I A +DY A DE++ D+IT I + GWW G V + R G+FP N+V +
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRG--VCKGRYGLFPANYVEL 63
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
CR L+ + P N EL D+I + ++++E W+ G L ++G FP N+VE + A
Sbjct: 14 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEILVA 68
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+D+ + EL ++GD+IT W+EG+L + G FP N+V +L
Sbjct: 18 YDFEPENEGELGFKEGDIITLTNQIDENWYEGML--HGQSGFFPINYVEIL 66
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 38 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+F++ DEL+ KGD+I RV+ GGWWEG R G FP N+VR
Sbjct: 12 KFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG--THNGRTGWFPSNYVR 59
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
G+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+ + + DEL +GD+I + WW+G + R G+ P N+V
Sbjct: 14 YTFEPRTPDELYFEEGDIIYITDMSDTNWWKG--TSKGRTGLIPSNYV 59
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 50.4 bits (119), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 16 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 63
Score = 44.3 bits (103), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
I A +DY A DE++ D+IT I + GWW G V + R G+FP N+V +
Sbjct: 11 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRG--VCKGRYGLFPANYVEL 64
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 160
G R ++ Y P N DELEL D +DV+ + ++GW+ G R + G FP N+V +
Sbjct: 7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+GSS + Y Q DEL LR+GD + ++ GW+ G+ R + G FP N+V
Sbjct: 3 SGSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
R L+++ P DEL + D+I + + WW+G + RTG+ PSN+V E
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAE 68
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+ + + DEL + +GD+I WW+G + R G+ P N+V
Sbjct: 21 YTFEPRTPDELYIEEGDIIYITDXSDTNWWKG--TSKGRTGLIPSNYV 66
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 108 CRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
C+V ++ YT N DEL +I+VL++ + WW+G + + G+FPSN+V+
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVK 55
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
+DYTAQ DEL KG +I + + WW+G + + G+FP N+V++
Sbjct: 9 YDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKL 56
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
GS I+ +DY AQ DELT ++GD I + GWWEG L +RG P N+V+
Sbjct: 1 GSPGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQ 57
Score = 44.7 bits (104), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 3 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ R L+ YT N DEL+L D+++V+ E E+GWW + G P +++E++
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL 63
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DYTAQ DEL L GD++ I GWW + R +RG P +++ L
Sbjct: 15 YDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYLEKL 63
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
CR L+ + P N EL D+I + ++++E W+ G + +G FP N+VE I
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI 58
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+D+ + EL ++GD+IT W+EG++ E+ G FP N+V V+
Sbjct: 10 YDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGES--GFFPINYVEVI 58
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY+AQ+ DE++ R GD I ++ GW G + R R GM P N++ +
Sbjct: 13 YDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEI 160
R R ++ Y+ + DE+ D I + +++GW G ++ RTG+ P+N++E +
Sbjct: 7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
K G + LFSY ++LE D+I VLS+V E W G + + G+FP FVE+
Sbjct: 3 KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59
Score = 27.3 bits (59), Expect = 5.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
F Y A + ++L ++GD+I + + W EG + + G+FP FV
Sbjct: 12 FSYEATQPEDLEFQEGDIILVLSKVNEEWLEG--ESKGKVGIFPKVFV 57
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 47.8 bits (112), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57
Score = 32.7 bits (73), Expect = 0.15, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+ + + DEL +GD+I + WW+G + R G+ P N+V
Sbjct: 10 YTFEPRTPDELYFEEGDIIYITDMSDTNWWKG--TSKGRTGLIPSNYV 55
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS A ++FD+ AQ ELTL+KGD++ + W EG R G+FP N+V
Sbjct: 3 SGSSGKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 60
Query: 88 VL 89
VL
Sbjct: 61 VL 62
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
G+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE
Sbjct: 7 GKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
R+ R ++ + A +EL ++I VL + + WW+G G+FPSNFV
Sbjct: 18 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+D+ A E +ELT + G++IT + WW+G G+FP NFV
Sbjct: 24 YDFEAAEDNELTFKAGEIITVLDDSDPNWWKG--ETHQGIGLFPSNFV 69
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 47.0 bits (110), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
I+ +DY AQ DELT ++GD I + GWWEG L +RG P N+V+
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQ 56
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 2 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 108 CRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
C+V ++ Y N DEL +I+V+++ + WW+G + TG+FPSN+V+
Sbjct: 19 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 71
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQ 97
+DY A DEL+ KG LI + WW+G + G+FP N+V++ ++ Q
Sbjct: 25 YDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYVKMTTDSDPSQQ 81
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 97 QVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNF 156
++ + K R+ R L+ + +EL ++I VL + + WW+G G+FPSNF
Sbjct: 9 EIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNF 68
Query: 157 V 157
V
Sbjct: 69 V 69
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRR--GMFPDNFVRVLGEAAAET 96
+D+ A E +ELT + G++I + WW+G EN R G+FP NFV ET
Sbjct: 24 YDFEAVEDNELTFKHGEIIIVLDDSDANWWKG----ENHRGIGLFPSNFVTT--NLNIET 77
Query: 97 QVAMRKKP 104
+ A P
Sbjct: 78 EAAAVSGP 85
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 46.6 bits (109), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
A+ E+DY A E +ELT + D I I WW G L ++ +G+FP N+V +
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
Score = 33.5 bits (75), Expect = 0.091, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 157
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 7 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 112 FSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEE 159
+ + + EL L D+I +L++ ++GWWRG + R G FPSN+VEE
Sbjct: 12 YDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE 60
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRRGMFPDNFV 86
A +D+ A++ EL+L++GD+I I + G GWW G + R G FP N+V
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIK-ILNKKGQQGWWRGEIY--GRIGWFPSNYV 58
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein
States By Relaxation Dispersion Nmr
Length = 62
Score = 46.6 bits (109), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
A+ E+DY A E +ELT + D I I WW G L ++ +G+FP N+V +
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 60
Score = 33.1 bits (74), Expect = 0.095, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 157
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 11 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 46.6 bits (109), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
A+ E+DY A E +ELT + D I I WW G L ++ +G+FP N+V +
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 57
Score = 33.1 bits (74), Expect = 0.096, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFV 157
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 8 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V
Sbjct: 6 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 31 SVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
SV A +D+ A E DEL R G+++ + + WW G L N+ G+FP N+V
Sbjct: 4 SVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYV 57
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V
Sbjct: 4 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+D+ A E DEL R G+++ + + WW G L N+ G+FP N+V
Sbjct: 10 YDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYV 55
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+D+ A E DEL R G+++ + + WW G L N+ G+FP N+V
Sbjct: 8 YDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYV 53
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 105 GRRCRVLFSYTP----ANAD---ELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSNF 156
GRR L+ Y P N D EL D+I V E++E G++ G L + G+ PSNF
Sbjct: 7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 157 VEEI 160
+EE+
Sbjct: 67 LEEV 70
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 46.2 bits (108), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY A +ADE++ + GD I ++ GW G + R R GM P N+V +
Sbjct: 10 YDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
Score = 43.5 bits (101), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEI 160
G+ R ++ Y A+ADE+ D I + ++EGW G ++ RTG+ P+N+VE I
Sbjct: 3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ ++ YT DEL +I V+ + ++GW+ G + TG+FP N+VE I
Sbjct: 19 KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DYT + DEL+ ++G +I I+ GW+EG++ G+FP N+V +
Sbjct: 24 YDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM--NGVTGLFPGNYVESI 72
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
RR R L+ + +EL ++I VL + + WW+G TG+FPSNFV
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRR--GMFPDNFV 86
+D+ A E +ELT + G+LIT + WW+G EN R G+FP NFV
Sbjct: 12 YDFEAVEDNELTFKHGELITVLDDSDANWWQG----ENHRGTGLFPSNFV 57
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
R L+ + DEL +V++VL WW GRL ++ G+FP+N+V
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+D+ A E DEL R G+++ + + WW G L N+ G+FP N+V
Sbjct: 9 YDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYV 54
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
C+ L+ + P N EL D+I + ++++E W+ G L ++G FP ++V+
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+D+ + EL R+GDLIT W+EG L + G FP ++V+VL
Sbjct: 20 YDFEPENDGELGFREGDLITLTNQIDENWYEGXL--HGQSGFFPLSYVQVL 68
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
GRR + L + + DEL ND+I ++S+ +E W G L G FP+ FVE
Sbjct: 7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS A D+ + DEL RK D+IT I + W G L RG FP FV
Sbjct: 3 SGSSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGEL--NGLRGWFPAKFVE 60
Query: 88 VLGEAAAETQVA 99
VL E + E +A
Sbjct: 61 VLDERSKEYSIA 72
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 29 GSSVIEASVE--FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
GS + +V+ FDY AQ DELT K +I + Q GGWW G + ++ FP N+V
Sbjct: 1 GSPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGK-KQLWFPSNYV 59
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 104 PGRRCRV--LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 160
P +C V LF Y DEL + +I + + E GWWRG + + FPSN+VEE+
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM 62
Query: 161 PADTMTAESRHR 172
+ E HR
Sbjct: 63 ----VNPEGIHR 70
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEI 160
G+R R ++ Y+ A+ DE+ D I + ++++GW G + TG+ P+N+VE I
Sbjct: 3 GKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY+A + DE++ + GD I ++ GW G + R GM P N+V +
Sbjct: 10 YDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 44.3 bits (103), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE +P +
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE 59
Score = 43.9 bits (102), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A ++FD+ AQ ELTL+KGD++ + W EG R G+FP N+V VL
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVEVL 56
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRL-RDRTGVFPSNFVEEI 160
G R R L+ Y DEL D + L E E+GW RGRL + G++P+N+VE I
Sbjct: 3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRENRRGMFPDNFVRVL 89
+DY QE DEL+ + GD +T + + GW G L + G++P N+V +
Sbjct: 10 YDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRL-DSGQLGLYPANYVEAI 60
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
M + R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 13 MDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 71
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
A FD+T EL + GD+I + + W EG + G+FP +FV++L +
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKILKDFPE 78
Query: 95 E 95
E
Sbjct: 79 E 79
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase
C, Gamma 2
Length = 69
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+GSS +DY A+ +DELT +G LI + + GGWW+G ++ FP N+V
Sbjct: 3 SGSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQ-YFPSNYV 60
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT-GVFPSNFVEEI 160
GR + L+ Y +DEL +I +S+ GWW+G R FPSN+VE+I
Sbjct: 7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV---RENRRGMFPDN 84
+GSS A V Y A +++L+L G LI ++ + GWW+G L ++ ++G FP +
Sbjct: 3 SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62
Query: 85 FVRVLGEAA 93
V++LG ++
Sbjct: 63 HVKLLGPSS 71
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-----TGVFPSNFVE 158
G +V +Y + +++L L +I +L + GWW+G L+ R G FP++ V+
Sbjct: 7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 6 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
Score = 34.3 bits (77), Expect = 0.052, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+ A FD+T EL + GD+I + + W EG + G+FP +FV++L
Sbjct: 5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKIL 59
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 22 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 71
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEA 92
+ A V+F+Y A+ DEL+L KG + + S GWW G + G FP N+V G++
Sbjct: 18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG--SYNGQVGWFPSNYVTEEGDS 75
Query: 93 AAETQVA 99
V
Sbjct: 76 PLGDHVG 82
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 43.9 bits (102), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 29 GSSVIEASVE--FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
GS +++V+ FDY AQ DELT K +I + Q GGWW G ++ FP N+V
Sbjct: 1 GSPTFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY-GGKKQLWFPSNYV 59
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 160
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 10 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 62
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ L+S+ + +L DVI +L S+ + WW GR+ R G+FP+N+VE +
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRV--QSGGWWEGLLVRENRRGMFPDNFVRVL 89
+A + + +E+ +L RKGD+IT ++ WW G + R G+FP N+V ++
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV 60
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 99 AMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFV 157
+M ++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V
Sbjct: 2 SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
Query: 158 EE 159
E
Sbjct: 62 TE 63
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A++L LRKGD + + WW + + G P N+V
Sbjct: 15 YDYMPMNANDLQLRKGDEYFILEESNLPWWRA-RDKNGQEGYIPSNYV 61
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDRTGVFPSNFV 157
L+S+ +L D I V+S+ + WW G+LR +TG+FP+N+V
Sbjct: 23 LYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
GR R F + EL L D++ + ++++ W+ G R G+FP ++E
Sbjct: 7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS A +FD+ AQ EL L+KGD++ + W+EG R G+FP ++
Sbjct: 3 SGSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRTYIE 60
Query: 88 VL 89
+L
Sbjct: 61 LL 62
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRG---RLRDRTGVFPSNFVE 158
++Y ADEL L + D + +L E EGW+RG R + + G+FP++++
Sbjct: 17 FYNYDARGADELSLQIGDTVHIL-ETYEGWYRGYTLRKKSKKGIFPASYIH 66
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR-ENRRGMFPDNFVRVLGEAAAE 95
++Y A+ ADEL+L+ GD + + GW+ G +R ++++G+FP +++ L EA E
Sbjct: 18 YNYDARGADELSLQIGDTVHILETYE-GWYRGYTLRKKSKKGIFPASYIH-LKEAIVE 73
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 43.5 bits (101), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 9 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 58
Score = 42.0 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
GS + A V+F+Y A+ DEL+L KG + + S GWW G + G FP N+V
Sbjct: 1 GSLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG--SYNGQVGWFPSNYVTE 58
Query: 89 LGE 91
G+
Sbjct: 59 EGD 61
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 5 VKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLE 54
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
I A V+F Y A+ DEL+L KG +T + S GWW G + G FP N+V
Sbjct: 1 IPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRG--SYNGQIGWFPSNYV 52
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 227
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 16 QAKELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE 75
+ K +SP + + A FD+T EL + GD+I + + W EG +
Sbjct: 158 KVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--R 215
Query: 76 NRRGMFPDNFVRVLGEAAAE 95
G+FP +FV++L + E
Sbjct: 216 GATGIFPLSFVKILKDFPEE 235
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 99 AMRKKP-GRRCRVLFSYTPANADELELHVNDVIDVLSE-----VEEGWWRGRL-RDRTGV 151
+M P G +F Y A +EL L D + VLS+ +EGWW G+L R GV
Sbjct: 22 SMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGV 81
Query: 152 FPSNFV 157
FPSN+V
Sbjct: 82 FPSNYV 87
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 39 FDYTAQEADELTLRKGDLITGIR---VQSG--GWWEGLLVRENRRGMFPDNFV 86
FDY A +ELTLR+GD + + SG GWW G L R G+FP N+V
Sbjct: 36 FDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQL-PSGRVGVFPSNYV 87
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
Score = 40.0 bits (92), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ QE EL R+GD I + WW+G + GMFP N+V
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYV 54
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase
C Gamma-1
Length = 61
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FDY AQ DELT K +I + Q GGWW G ++ FP N+V
Sbjct: 10 FDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY-GGKKQLWFPSNYV 56
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEI 160
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 59
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 213
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ QE EL R+GD I + WW+G + GMFP N+V
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYV 210
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 112 FSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVEEIP--------- 161
+ + DEL D++ VL+E ++ W++ L + G P N++E P
Sbjct: 7 YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIP 66
Query: 162 ---ADTMTAESRH 171
A+ M ++ RH
Sbjct: 67 RAKAEEMLSKQRH 79
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFVRV 88
+EA ++D+ A DEL+ ++GD++ + + W++ L + G P N++ +
Sbjct: 1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEM 55
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 57
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
GS+ ++A FD+ QE EL R+GD I + WW+G + GMFP N+V
Sbjct: 1 GSTYVQAL--FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYV 54
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEIPA 162
R L+ + N DE+ + D+I V + E GW G + G FP N+VE++P+
Sbjct: 9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS 64
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 42.0 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 57
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
GS+ ++A FD+ QE EL R+GD I + WW+G + GMFP N+V
Sbjct: 1 GSTYVQAL--FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYV 54
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 42.0 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 55
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ QE EL R+GD I + WW+G + GMFP N+V
Sbjct: 7 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYV 52
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
G R + L +Y N +L+ + DVI + +++E W++G + +G+FP++ VE I
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS A +Y + +L KGD+I R W++G + G+FP + V
Sbjct: 3 SGSSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI--NGVSGIFPASSVE 60
Query: 88 VL 89
V+
Sbjct: 61 VI 62
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
V F+Y DEL L + V +GWWRG + G FPSN+V E
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYVLE 55
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
I A V F Y A+ DEL+L G +T S GWW G + G FP N+V
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRG--SYNGQIGWFPSNYV 53
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 112 FSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEE 159
+++ + EL L DV+ + S + ++GWW+G R G FPS +VEE
Sbjct: 14 YNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRRGMFPDNFV 86
A +++ A++ EL+LR+GD++ G GWW+G R G FP +V
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET--NGRIGWFPSTYV 61
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVL-SEVEEGWWRGRLRD-RTGVFPSNFVEEI 160
R R L+ Y DEL D + + E E+GW +GRL + + G++P+N+VE I
Sbjct: 430 RVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRENRRGMFPDNFVRVL 89
+DY QE DEL+ + GD +T + + GW +G L + G++P N+V +
Sbjct: 435 YDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRL-DNGQVGLYPANYVEAI 485
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-RDRTGVFPSNFV 157
L+ YT +DEL +H D+I V + E WW G + + + G FP+N V
Sbjct: 12 LYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DYTA +DELT+ +GD+I + WW G + + + G FP N V
Sbjct: 13 YDYTANRSDELTIHRGDIIRVFFKDNEDWWYG-SIGKGQEGYFPANHV 59
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 41.2 bits (95), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V E
Sbjct: 2 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 56
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A++L LRKGD + + WW + + G P N+V
Sbjct: 8 YDYMPMNANDLQLRKGDEYFILEESNLPWWRA-RDKNGQEGYIPSNYV 54
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
EA +F++ E++ RKG+ IT +R W+EG + +R+G+FP +V V+
Sbjct: 9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 64
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 160
F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 14 FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 64
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
EA ++ + EL+ RKG+ I IR + W+EG + R+G+FP ++V+V
Sbjct: 19 EAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQV 73
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 121 ELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVE 158
EL + I ++ +V E W+ GR+ R G+FP+++V+
Sbjct: 33 ELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEEI 160
G L +Y+ +EL+L + I VL + ++GW +G L RTG+FPS++V +
Sbjct: 7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV 64
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
Y+A +EL L+KG+ I + GW +GL + R G+FP ++V
Sbjct: 16 YSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
+ + L S+T + L +D+I VL E +E WW G + G FP ++V+ IP
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVKIIPGS 67
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 28 AGSSVIE---ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDN 84
+GSS +E A +TA++ + L K D+IT + Q WW G + RG FP +
Sbjct: 3 SGSSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEV--HGGRGWFPKS 59
Query: 85 FVRVL 89
+V+++
Sbjct: 60 YVKII 64
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
EA +F++ E++ RKG+ IT +R W+EG + +R+G+FP +V V+
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 160
F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 13 FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
R F+ +P + D L+L D+ID++S+ G W G L ++ G F +V+ +
Sbjct: 13 RVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 66
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 35 ASVEFDYTAQ--EADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEA 92
A V D+T + D L L+KGD+I I G W GLL N+ G F +V VL
Sbjct: 12 ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLL--NNKVGTFKFIYVDVLSSG 69
Query: 93 AAE 95
+
Sbjct: 70 PSS 72
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 96 TQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSN 155
Q AM + + + L+ + + L + NDVI VL E ++ WW G ++ + G FP +
Sbjct: 3 AQPAMAQGALLQAQALYPWRAKKDNHLNFNKNDVITVL-EQQDMWWFGEVQGQKGWFPKS 61
Query: 156 FVEEIPA 162
+V+ I A
Sbjct: 62 YVKLISA 68
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
L+ + P +L L D + +L ++ W++G RTG+FP+N+V+
Sbjct: 8 LYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
Score = 32.7 bits (73), Expect = 0.14, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
G +EA +FD Q+ +L L+ GD + + S W++G R G+FP N+V+
Sbjct: 1 GMEYVEALYQFD--PQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVK 55
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLS-----EVEEGWWRG----------RLRDRTGV 151
+ + YT + DEL+L DV+ V+ E +EGW G +L GV
Sbjct: 144 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 203
Query: 152 FPSNFVEEIP 161
FP NF E +P
Sbjct: 204 FPENFTERVP 213
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-----GW--------WEGLLVRENRR 78
+ + + DYTA + DEL L+ GD++ I Q+ GW W E R
Sbjct: 142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCR 201
Query: 79 GMFPDNFV 86
G+FP+NF
Sbjct: 202 GVFPENFT 209
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 37 VEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFV 86
V++D+ A+ DELT++ GD + + +S WW LV + G+ P F+
Sbjct: 11 VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
L+ + + EL DVI+V+ WW GR+ D G FP++FV
Sbjct: 42 LWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 30 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
SV+ A +D+ + EL + GD+I + + WW G + + G FP +FVR+
Sbjct: 34 GSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVA--DGEGWFPASFVRL 90
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPADTMT 166
R L+ + +A++L +++ ++ + EE WW R +D R G+ P +VE+ +
Sbjct: 128 VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEK-----LV 182
Query: 167 AESRHRKESNNN 178
S H K N N
Sbjct: 183 RSSPHGKHGNRN 194
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 43/162 (26%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL--------- 89
+D+ +A++L +KG+++ I WW ++ R GM P +V L
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSA-RNKDGRVGMIPVPYVEKLVRSSPHGKH 190
Query: 90 -------------GEAAAETQV-----AMRKKPGRRCRVLFSY-------------TPAN 118
A A+ Q A+ PG L S P
Sbjct: 191 GNRNSNSYGIPEPAHAXAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCA 250
Query: 119 ADE--LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
D+ L L V D++ V G W G + R G+FP V+
Sbjct: 251 YDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 43 AQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A + L L GD++ R+ G WEG + R+G+FP V++
Sbjct: 250 AYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIF 294
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPADTMT 166
R L+ + +A++L +++ ++ + EE WW R +D R G+ P +VE+ +
Sbjct: 128 VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEK-----LV 182
Query: 167 AESRHRKESNNN 178
S H K N N
Sbjct: 183 RSSPHGKHGNRN 194
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 43/162 (26%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL--------- 89
+D+ +A++L +KG+++ I WW ++ R GM P +V L
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSA-RNKDGRVGMIPVPYVEKLVRSSPHGKH 190
Query: 90 -------------GEAAAETQV-----AMRKKPGRRCRVLFSY-------------TPAN 118
A A+ Q A+ PG L S P
Sbjct: 191 GNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCA 250
Query: 119 ADE--LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
D+ L L V D++ V G W G + R G+FP V+
Sbjct: 251 YDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 43 AQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A + L L GD++ R+ G WEG + R+G+FP V++
Sbjct: 250 AYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIF 294
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + DE+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 7 LYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + DE+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 8 YDYQEKSPDEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 56
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNFV 157
RR + ++ N DEL +VI V E ++ WW G + +R GVFP +FV
Sbjct: 11 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLL-VRENRRGMFPDNFV 86
+G+ V +D A DELT +G++I + WW G + + R+G+FP +FV
Sbjct: 6 SGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
Query: 87 RVLGEAAAET 96
+L ++ +
Sbjct: 66 HILSDSGPSS 75
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIR---VQSGGWWEGLLVRENRRGMFPDN 84
+GSS + A +D +DEL +GD++T + +S GWW+ LL R+G+ P N
Sbjct: 3 SGSSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLL--HGRQGLAPAN 60
Query: 85 FVRVL 89
+++L
Sbjct: 61 RLQIL 65
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEV---EEGWWRGRLRDRTGVFPSNFVE 158
G R L+ P +DEL D++ +L + EGWW+ L R G+ P+N ++
Sbjct: 7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
+ L+ Y DEL +I +L+ + ++G+W G R GVFPS VEE+ +
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS 68
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 30 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQS---GGWWEGLLVRENRRGMFPDNFV 86
S V +DY Q DEL+ +G +I + ++ G+WEG R G+FP V
Sbjct: 6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEF--NGRIGVFPSVLV 63
Query: 87 RVL 89
L
Sbjct: 64 EEL 66
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A+ ++L+ +KG+ I G WWE + + G P N+V
Sbjct: 12 YDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV-----EEIPAD 163
L+ + + EL DVI+V+ WW GR+ D G FP++FV ++ PAD
Sbjct: 36 LWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPAD 93
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 31 SVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
SV+ A +D+ + EL + GD+I + + WW G + + G FP +FVR+
Sbjct: 29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVA--DGEGWFPASFVRL 84
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV---------FPSN 155
G+ LF Y A++L D + VL EGWW R ++ G PSN
Sbjct: 7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66
Query: 156 FVEE 159
+V E
Sbjct: 67 YVAE 70
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWW-------EGLLVRENRRGM 80
+GSS FDY A+ A++L+ R GD + + GWW +G + + +G
Sbjct: 3 SGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGY 62
Query: 81 FPDNFV 86
P N+V
Sbjct: 63 IPSNYV 68
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + DE+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + DE+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPDEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVE 158
R+ RVL+ Y AN+ EL L ++VI V S V + W G ++ G P ++E
Sbjct: 18 RKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLE 72
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho
Guanine Exchange Factor (Gef) 16
Length = 79
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+ A++ADE+TL++ D++ ++ Q GW G +R+ G FP++F R +
Sbjct: 26 FFAKQADEVTLQQADVVLVLQ-QEDGWLYGERLRDGETGWFPEDFARFI 73
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 113 SYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD-RTGVFPSNFVEEI 160
++ ADE+ L DV+ VL + E+GW G RLRD TG FP +F I
Sbjct: 25 AFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFI 73
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVID-VLSEVEEGWWRGRLRDRTGVFPSNFVE 158
P R+ + L++ + EL V D V E GW G L +TG+ P N+VE
Sbjct: 9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 24 RCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-----GW--------WEG 70
R + + + + DYTA + DEL L+ GD++ I Q+ GW W
Sbjct: 2 RLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQ 61
Query: 71 LLVRENRRGMFPDNFV 86
E RG+FP+NF
Sbjct: 62 HKKLEKCRGVFPENFT 77
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 114 YTPANADELELHVNDVIDVLS-----EVEEGWWRG----------RLRDRTGVFPSNFVE 158
YT + DEL+L DV+ V+ E +EGW G +L GVFP NF E
Sbjct: 19 YTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTE 78
Query: 159 EIP 161
+P
Sbjct: 79 RVP 81
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPADTMTAE 168
L+ Y D+L H + +L+ E WW R TG PSN+V P D++ AE
Sbjct: 9 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA--PVDSIQAE 66
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
+DY A+ D+L+ KG+ + G WWE + G P N+V + AE
Sbjct: 10 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAE 66
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPADTMTAE 168
L+ Y D+L H + +L+ E WW R TG PSN+V P D++ AE
Sbjct: 10 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA--PVDSIQAE 67
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
G+ V +DY A+ D+L+ KG+ + G WWE + G P N+V
Sbjct: 1 GTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 60
Query: 89 LGEAAAE 95
+ AE
Sbjct: 61 VDSIQAE 67
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 113 SYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFVEEIPADTMTAESR 170
SY N L H D+I +L + +E GW G R+G+FP++ V+ A +
Sbjct: 16 SYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKE 75
Query: 171 HRKESNNNEA 180
R S +
Sbjct: 76 QRSGSGPSSG 85
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQS---GGWWEGLLVRENRRGMFPDNFVRVL 89
+ A +D A+ DEL+ RKGD++T + + GWW L R+G+ P N +++L
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWW--LCSLHGRQGIVPGNRLKIL 61
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 109 RVLFSYTPANADELELHVNDVIDVL---SEVEEGWWRGRLRDRTGVFPSN 155
+ L+ + DEL D++ VL ++ +GWW L R G+ P N
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGN 56
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQ 97
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L A + Q
Sbjct: 24 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKLAAAWSHPQ 80
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ A
Sbjct: 23 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA 74
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
AGS I +DY A ++L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 5 AGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 62
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
AGS I +DY A ++L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 21 AGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 78
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNFV 157
RR + ++ N DEL +VI V E ++ WW G + +R GVFP +FV
Sbjct: 2 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
Score = 33.9 bits (76), Expect = 0.063, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV-RENRRGMFPDNFVRVLGE 91
+D A DELT +G++I + WW G + + R+G+FP +FV +L +
Sbjct: 8 YDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 61
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A+ ++L+ +KG+ I G WWE + + G P N+V
Sbjct: 34 YDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
AGS I +DY A ++L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 5 AGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 62
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI-PADTMTAES 169
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++ PA + + E+
Sbjct: 11 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASREN 70
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L A +
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKLDPAQS 65
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 161
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGG----WWEGL-----LVRENRRGMFP 82
+DY Q DEL +++GD +T I + WW L V N G++P
Sbjct: 177 WDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
G RVLF + P +EL++ +++ VL + + W + G+ P N++E +
Sbjct: 7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPV 62
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 37.4 bits (85), Expect = 0.005, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 37 VEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFV 86
V++D+ A+ DELT++ GD + + +S WW LV + G+ P F+
Sbjct: 7 VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
+DY A+ D+L+ KG+ + G WWE + G P N+V + AE
Sbjct: 10 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAE 66
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPADTMTAE 168
L+ Y D+L H + +L+ E WW R TG PSN+V P D++ AE
Sbjct: 9 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 66
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 161
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGG----WWEGL-----LVRENRRGMFP 82
+DY Q DEL +++GD +T I + WW L V N G++P
Sbjct: 177 WDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY + D+L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 56
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRT-GVFPSNFVEEI 160
L+ Y + D+L D + VL E E WW+ R L R G PSN+V +
Sbjct: 9 LYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
VL+ Y + EL + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLKKL 61
Score = 35.4 bits (80), Expect = 0.019, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
V +DY + ELT++KGD++T + + WW+ + +R+G P +++ L
Sbjct: 11 VLYDYQEKSPRELTIKKGDILTLLNSTNKDWWK--VEVNDRQGFIPAAYLKKL 61
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-----GW--------WEGLLVRENRR 78
+ + + DYTA + DEL L+ GD++ I Q+ GW W E R
Sbjct: 44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCR 103
Query: 79 GMFPDNFV 86
G+FP+NF
Sbjct: 104 GVFPENFT 111
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 114 YTPANADELELHVNDVIDVLS-----EVEEGWWRG----------RLRDRTGVFPSNFVE 158
YT + DEL+L DV+ V+ E +EGW G L GVFP NF E
Sbjct: 53 YTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTE 112
Query: 159 EI 160
+
Sbjct: 113 RV 114
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
+DY A+ D+L+ KG+ + G WWE + G P N+V + AE
Sbjct: 12 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAE 68
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPADTMTAE 168
L+ Y D+L H + +L+ E WW R TG PSN+V P D++ AE
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV--APVDSIQAE 68
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
G+ ++L+ +T NA+EL + ++V++VL + + WW+ R R + G P N + E
Sbjct: 7 GKYVKILYDFTARNANELSVLKDEVLEVLEDGRQ-WWKLRSRSGQAGYVPCNILGE 61
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS + +D+TA+ A+EL++ K +++ ++ G W L R + G P N
Sbjct: 3 SGSSGKYVKILYDFTARNANELSVLKDEVLE--VLEDGRQWWKLRSRSGQAGYVPCN--- 57
Query: 88 VLGEAAAET 96
+LGEA+ +
Sbjct: 58 ILGEASGPS 66
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 37.0 bits (84), Expect = 0.006, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 111 LFSYTPANADELELHVNDVIDVL--SEVEEGWWRGRLRDRTGVFPSNFV 157
L+++ +L DVI +L S+ + WW GR + G+FP+N+V
Sbjct: 9 LYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 39 FDYTAQEADELTLRKGDLITGIRV--QSGGWWEGLLVREN-RRGMFPDNFVRV 88
+++ ++ +L +KGD+IT ++ WW G R N + G+FP N+VRV
Sbjct: 10 YNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTG---RTNGKEGIFPANYVRV 59
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 37.0 bits (84), Expect = 0.007, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A+ D+L+ KG+ + G WWE + G P N+V
Sbjct: 8 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 35.0 bits (79), Expect = 0.031, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPADTM 165
L+ Y D+L H + +L+ E WW R TG PSN+V P D++
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA--PVDSI 61
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 121 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
EL DVI VL + WW G++ D G FP++FV
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
++ A +D+ EL + GD+I + + WW G + ++ G FP +FVR+
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQI--DDEEGWFPASFVRLW 65
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY + D+L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 56
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRT-GVFPSNFVEEI 160
L+ Y + D+L D + VL E E WW+ R L R G PSN+V +
Sbjct: 9 LYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A+ D+L+ KG+ + G WWE + G P N+V
Sbjct: 8 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 33.9 bits (76), Expect = 0.055, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A+ D+L+ KG+ + G WWE + G P N+V
Sbjct: 7 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
Score = 33.9 bits (76), Expect = 0.057, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 6 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV-----EEIPAD 163
L+ + + EL DVI+V WW GR+ D G FP++FV ++ PAD
Sbjct: 73 LWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRLRVNQDEPAD 130
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 31 SVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
SV+ A +D+ + EL + GD+I + WW G + + G FP +FVR+
Sbjct: 66 SVVCAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVA--DGEGWFPASFVRL 121
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A+ D+L+ KG+ + G WWE + G P N+V
Sbjct: 11 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
Score = 33.9 bits (76), Expect = 0.057, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 10 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
L+ Y+ +L + I V + E WW G + DR+G+FPSN+V+ P D+
Sbjct: 14 LYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTGSIGDRSGIFPSNYVK--PKDS 64
>pdb|2GQI|A Chain A, Solution Structure Of The Sh3 Domain Of Human Ras Gtpase-
Activating Protein 1
Length = 71
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 105 GRRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 160
GRR R + YT + DE+ D+ V +E+E+GW W LR D G+ + VEE+
Sbjct: 7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
G+ V +DY A+ D+L+ KG+ + G WWE + G P N+V
Sbjct: 2 GTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPADT 164
L+ Y D+L H + +L+ E WW R TG PSN+V P D+
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA--PVDS 64
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
VL+ Y + EL + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61
Score = 35.0 bits (79), Expect = 0.025, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
V +DY + ELT++KGD++T + + WW+ + +R+G P +++ L
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK--IEVNDRQGFVPAAYLKKL 61
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENR-RGMFPDNFVRV 88
IEA +FDY + A EL+ +KG + + S WWEG R N G+ P ++ V
Sbjct: 10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG---RHNGIDGLIPHQYIVV 63
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
F+YT A EL DV+ + WWRG G+ P ++ +PA T
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI-TLPAGT 68
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
F YT + A EL+ R+GD++ S WW G RG+ P ++ + A E QV
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRG--EHNGMRGLIPHKYITL--PAGTEKQV 72
>pdb|2CSQ|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 97
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 96 TQVAMRKKPGRRCRVLFSYTP--------ANADELELHVNDVIDVLSEVE-EGWWRGRLR 146
T + P R LF Y P A +EL +I V + + +G++RG
Sbjct: 8 TDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC 67
Query: 147 DRTGVFPSNFVEEIPAD 163
R G+ P N V EI AD
Sbjct: 68 ARLGLIPCNMVSEIQAD 84
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 35.8 bits (81), Expect = 0.014, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+++V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVKKL 61
Score = 35.4 bits (80), Expect = 0.023, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P ++V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPASYVKKL 61
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 35.8 bits (81), Expect = 0.015, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A D+L+ KG+ + G WWE + G P N+V
Sbjct: 8 YDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 33.9 bits (76), Expect = 0.058, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 7 LYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEI 160
R +F + P + DELEL V+D + V + E+ W+ RT GVFP+ + E+
Sbjct: 7 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA-YNXRTGARGVFPAYYAIEV 60
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 49 LTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
L G+LIT ++V GGWWEG + RG FP ++V++L
Sbjct: 21 LRFAAGELITLLQVPDGGWWEG-EKEDGLRGWFPASYVQLL 60
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGWWRGRLRDRT-GVFPSNFVEEI 160
G RCR L+ ++ + L ++I +L + GWW G D G FP+++V+ +
Sbjct: 3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL 60
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
SP R V +DY ++ +L+ +KG+ + + G WW + + G
Sbjct: 74 SPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGY 133
Query: 81 FPDNFV 86
P N+V
Sbjct: 134 IPSNYV 139
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 35.4 bits (80), Expect = 0.019, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A D+L+ KG+ + G WWE + G P N+V
Sbjct: 7 YDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
Score = 34.7 bits (78), Expect = 0.037, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPADT 164
L+ Y D+L H + +L+ E WW R TG PSN+V P D+
Sbjct: 6 LYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA--PVDS 59
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 35.4 bits (80), Expect = 0.019, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKKL 61
Score = 35.0 bits (79), Expect = 0.031, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAGYVKKL 61
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 35.4 bits (80), Expect = 0.020, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
VL+ Y + E+ + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61
Score = 34.3 bits (77), Expect = 0.046, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
V +DY + E+T++KGD++T + + WW+ + +R+G P +++ L
Sbjct: 11 VLYDYQEKSPREVTIKKGDILTLLNSTNKDWWK--IEVNDRQGFVPAAYLKKL 61
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 35.4 bits (80), Expect = 0.020, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 11 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 60
Score = 35.0 bits (79), Expect = 0.031, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 60
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 35.4 bits (80), Expect = 0.020, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 34.7 bits (78), Expect = 0.032, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPGEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
G+ V +DY A D+L+ KG+ + G WWE + G P N+V
Sbjct: 11 GGTGVTLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 21 LYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEI 160
R +F + P + DELEL V+D + V + E+ W+ RT GVFP+ + E+
Sbjct: 10 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA-YNMRTGARGVFPAYYAIEV 63
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 112 FSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVEEIP 161
+ + DEL D++ VL+E ++ W++ L + G P N++E P
Sbjct: 16 YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP 66
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFVRV 88
+EA ++D+ A DEL+ ++GD++ + + W++ L + G P N++ +
Sbjct: 10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEM 64
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A ++L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 9 YDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 55
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A ++L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 15 YDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 61
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
G+ V +DY A D+L+ KG+ + G WWE + G P N+V
Sbjct: 11 GGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 21 LYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 35.4 bits (80), Expect = 0.023, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 7 LYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56
Score = 34.3 bits (77), Expect = 0.045, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 8 YDYQEKGDSEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 56
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 35.4 bits (80), Expect = 0.023, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 34.7 bits (78), Expect = 0.037, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPAEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|3PVL|A Chain A, Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex With
The Cen1 Of Sans
Length = 655
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 44 QEADELTLRKGDLI-----TGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+E+ L+ KGDLI TG +V + GW G+ R +RG FP + V V+
Sbjct: 588 EESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVM 638
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
GS V +DY A +L+ KG+ + SG WWE + G P N+V
Sbjct: 3 GSGVTLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYV 60
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 35.0 bits (79), Expect = 0.027, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 34.3 bits (77), Expect = 0.044, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
V+ +Y EL L +V+DV+ + E GWW + G P+ ++E
Sbjct: 13 VVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLE 61
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 35.0 bits (79), Expect = 0.027, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61
Score = 34.3 bits (77), Expect = 0.044, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 35.0 bits (79), Expect = 0.028, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
VL+ Y + E+ + D++ +L+ + WW+ + DR G P+ +++++
Sbjct: 11 VLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKKL 61
Score = 34.3 bits (77), Expect = 0.042, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
V +DY + E+T++KGD++T + + WW+ + ++R+G P +++ L
Sbjct: 11 VLYDYQEKSPREVTVKKGDILTLLNSTNKDWWK--VEVDDRQGFIPAAYLKKL 61
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVE-----EGWWRGR--LRDRTGVFPSNFV 157
+V++ YTP N DELEL D I +S +E EGW G +G+ P N++
Sbjct: 20 QVIYPYTPQNDDELELVPGDFI-FMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 74
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQ----SGGWWEGLLVRENRRGMFPDNFVRVLGEA 92
V + YT Q DEL L GD I ++ S GW G + G+ P+N++ E
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC 80
Query: 93 AA 94
+
Sbjct: 81 ST 82
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 35.0 bits (79), Expect = 0.029, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVKKL 61
Score = 33.9 bits (76), Expect = 0.056, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGYVPAAYVKKL 61
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 9 VDEGDFEQAKELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWW 68
V D+ K+ S + H VI ++DYTAQ+ EL ++K + + + S WW
Sbjct: 9 VPNPDYNSLKKGSLVKNLHMTEEVI-VIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWW 66
Query: 69 EGLLVRE--NRRGMFPDNFV 86
VR NR G P N+V
Sbjct: 67 R---VRNAANRTGYVPSNYV 83
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 158
+ YT EL++ N+ + +L + + WWR R +RTG PSN+VE
Sbjct: 38 WDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 84
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 86 VRVLGEAAAETQVAMRKKPGRRCRV-LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR 144
+RVL EA+ +A KKP V F +T +L + +++LS+ + WW R
Sbjct: 130 MRVLTEASL---LAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEAR 186
Query: 145 -LRDRTGVFPSNFVE 158
TG+ P+N+V+
Sbjct: 187 NALGTTGLVPANYVQ 201
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 34.7 bits (78), Expect = 0.038, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
V +DY + ELT++KGD++T + + WW+ + R+G P +++ L
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK--IEVNGRQGFVPAAYLKKL 61
Score = 33.5 bits (75), Expect = 0.072, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 110 VLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
VL+ Y + EL + D++ +L+ + WW+ + R G P+ +++++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
GS V +DY A +L+ KG+ + G WWE + G P N+V
Sbjct: 3 GSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 34.3 bits (77), Expect = 0.043, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A ++L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 7 YDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 53
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 34.3 bits (77), Expect = 0.044, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKL 61
Score = 33.9 bits (76), Expect = 0.064, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVADRQGFVPAAYVKKL 61
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 86 VRVLGEAAAETQVAMRKKPGRRCRV-LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR 144
+RVL EA+ +A KKP V F +T +L + +++LS+ + WW R
Sbjct: 101 MRVLTEASL---LAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEAR 157
Query: 145 -LRDRTGVFPSNFVE 158
TG+ P+N+V+
Sbjct: 158 NALGTTGLVPANYVQ 172
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 34.3 bits (77), Expect = 0.050, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + R+G P +V+ L
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNGRQGFVPAAYVKKL 56
Score = 32.7 bits (73), Expect = 0.14, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + R G P+ +V+++
Sbjct: 7 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKL 56
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 40 DYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
D+TAQ+ +LT +KG+++ I + GWW + N G+ P ++ E
Sbjct: 18 DFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGN-EGLVPRTYLEPYSE 68
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 34.3 bits (77), Expect = 0.053, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKL 61
Score = 33.5 bits (75), Expect = 0.086, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVGDRQGFVPAAYVKKL 61
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 33.9 bits (76), Expect = 0.060, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEV--NGRQGFVPAAYVKKL 61
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ + R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKKL 61
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 117 ANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
A E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 11 AGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 58
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 48 ELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 54
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 33.9 bits (76), Expect = 0.066, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY ++ +L+ +KG+ + + G WW + R G P N+V
Sbjct: 7 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 121 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 50
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 48 ELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 46
>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
Nexin-9
Length = 77
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 28 AGSS--VIEASVEFDYTAQEAD-ELTLRKGDLITGIRVQ-SGGWWEGLLVRENR--RGMF 81
+GSS +A V +D+ A+ + ELT+ +G++IT GGW EG + N+ +G+
Sbjct: 3 SGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEG---KNNKGEQGLV 59
Query: 82 PDNFVRVL 89
P ++V +L
Sbjct: 60 PTDYVEIL 67
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 33.5 bits (75), Expect = 0.091, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFVR 87
+ Y AQ DE+++ GD+IT IR G GW G + +G+FP ++ +
Sbjct: 7 YAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC--DGLKGLFPTSYCK 54
Score = 26.6 bits (57), Expect = 9.5, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 111 LFSYTPANADELELHVNDVIDVL-SEVEEGWWRGRLRDRTGVFPSNF 156
+++Y DE+ + D+I V+ + GW G G+FP+++
Sbjct: 6 IYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 39 FDYTAQEADELTLRKGDLITGIR----VQSGGWWEGL-----LVRENRRGMFP 82
+DY+A+ DEL+ R+G+ +T +R ++ WW L V N G+FP
Sbjct: 161 WDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFP 213
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 33.1 bits (74), Expect = 0.11, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 121 ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 48
Score = 30.0 bits (66), Expect = 1.00, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 48 ELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
E+T++KGD++T + + WW+ + +R+G P +V+ L + V
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKLDSGTGKELV 53
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDV-LSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
+ R L Y ++ L ND+I + + E W+ G+L + G FP + VE + +D
Sbjct: 11 KYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD 69
>pdb|4FSS|A Chain A, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|B Chain B, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|C Chain C, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
Length = 62
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 106 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 160
RR R + YT + DE+ D V +E+E+GW W LR D G+ + VEE+
Sbjct: 3 RRVRAILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 60
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 158
F Y EL++ N+ + +L + + WWR R ++TG PSN+VE
Sbjct: 14 FDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVE 60
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 29 GSSVIEASV---EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE--NRRGMFPD 83
GS++ E V +FDY AQ+ EL ++K + + + S WW VR N+ G P
Sbjct: 1 GSTMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLD-DSKSWWR---VRNSMNKTGFVPS 56
Query: 84 NFV 86
N+V
Sbjct: 57 NYV 59
>pdb|2J05|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J05|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J06|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
pdb|2J06|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
Length = 65
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 106 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGW-WRGRLR-DRTGVFPSNFVEEI 160
RR R + YT + DE+ D V +E+E+GW W LR D G+ + VEE+
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEEV 63
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 158
+ YT EL++ N+ + +L + + WWR R +RTG PSN+VE
Sbjct: 11 WDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 57
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 38 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE--NRRGMFPDNFV 86
++DYTAQ+ EL ++K + + + S WW VR NR G P N+V
Sbjct: 10 KWDYTAQQDQELDIKKNERLWLLD-DSKTWWR---VRNAANRTGYVPSNYV 56
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 32.3 bits (72), Expect = 0.18, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY ++ +L+ +KG+ + + G WW + + G P N+V
Sbjct: 14 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 120 DELELHVNDVIDVL-SEVEEGWWRGRLRDRT---GVFPSNFVEEI 160
D+L + +NDVI V+ E WWRG+ RT G FP N V +
Sbjct: 291 DKLHIQMNDVITVIEGRAENYWWRGQ-NTRTLCVGPFPRNVVTSV 334
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 44 QEADELTLRKGDLITGIRVQS-GGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
+E D+L ++ D+IT I ++ WW G R G FP N V + +A+
Sbjct: 288 EEPDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPFPRNVVTSVAGLSAQ 340
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 158
F Y EL++ N+ + +L + + WWR R ++TG PSN+VE
Sbjct: 13 FDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVE 59
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 38 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE--NRRGMFPDNFV 86
+FDY AQ+ EL ++K + + + S WW VR N+ G P N+V
Sbjct: 12 KFDYVAQQEQELDIKKNERLWLLD-DSKSWWR---VRNSMNKTGFVPSNYV 58
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY ++ +L+ +KG+ + + G WW + + G P N+V
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY ++ +L+ +KG+ + + G WW + + G P N+V
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY ++ +L+ +KG+ + + G WW + + G P N+V
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRG--RLRDRTGVFPSNFVEE 159
++++ P ADE+ + D+I V +G+ +G R RTG++PS V E
Sbjct: 448 IYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY ++ +L+ +KG+ + + G WW + + G P N+V
Sbjct: 10 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 32.0 bits (71), Expect = 0.22, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY ++ +L+ +KG+ + + G WW + + G P N+V
Sbjct: 14 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 32.0 bits (71), Expect = 0.23, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY ++ +L+ +KG+ + + G WW + + G P N+V
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 32.0 bits (71), Expect = 0.23, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENR-RGMFPDNFVRV 88
A +FDY + A EL+ +KG + S WWEG R N G+ P ++ V
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEG---RHNGIDGLVPHQYIVV 60
Score = 26.6 bits (57), Expect = 9.7, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
F Y +A EL + + E WW GR G+ P ++
Sbjct: 13 FDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNFVEEI 160
G+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 1 GQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN----RRGMFPDNFVRVL 89
+D+ + +EL L +GD++ GW LV EN + G+ P+ FV +
Sbjct: 8 YDFEPENDNELRLAEGDIVFISYKHGQGW----LVAENESGSKTGLVPEEFVSYI 58
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 30 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
S++ EA +DY A+ D+L+ KG+ + G WWE + G P ++
Sbjct: 5 STLFEAL--YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFV 157
L+ Y D+L H + +L+ E WW R TG PS ++
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 92 AAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTG 150
A + V +R++ R LF + + ++L D++ + + EE WW + + G
Sbjct: 1 GAMGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 60
Query: 151 VFPSNFVEE 159
+ P +VE+
Sbjct: 61 MIPVPYVEK 69
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
FD+ + ++L +KGD++ IR + W E +RGM P +V A+A
Sbjct: 21 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA 75
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 99 AMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLR-DRTGVFPSNF 156
+R P C+V++SY + DEL + ++V++V+ + + E W + R + + G P +
Sbjct: 8 TLRNYP-LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKY 66
Query: 157 VE 158
++
Sbjct: 67 LQ 68
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN-------RRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + V+ R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVKATANDKTYERQGFVPAAYVKKL 69
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--------DRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ ++ +R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVKKL 69
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 31.6 bits (70), Expect = 0.33, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQ-SGGWWEGLLVRENRRGMFPDNFVRV 88
+EA + D++A DEL+ RKG ++ + ++ W+ L + + G+ P N++ +
Sbjct: 1 MEAIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAEL--DGKEGLIPSNYIEM 55
Score = 30.8 bits (68), Expect = 0.57, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 114 YTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVE 158
++ DEL ++ +L+ E + W+R L + G+ PSN++E
Sbjct: 9 FSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 120 DELELHVNDVIDVLSE-VEEGWWRGRLRDRTGVFPSNFVE 158
DEL D++ VL+E ++ W++ L + G P N++E
Sbjct: 15 DELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIE 54
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFVRV 88
+EA + D+ A DEL+ ++GD++ + +S W++ L + G P N++ +
Sbjct: 1 MEAIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAEL--NGKDGFIPKNYIEM 55
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 31.2 bits (69), Expect = 0.35, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY + + +L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 10 YDYYSPFSWDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 56
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG-LLVREN-----RRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + + N R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 69
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 69
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 121 ELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEI 160
E+ N+++ V S++E WW+ R + TG+ PSN+V+ I
Sbjct: 23 EISFEQNEILQV-SDIEGRWWKARRANGETGIIPSNYVQLI 62
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN-------RRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + V+ R+G P +V+ L
Sbjct: 13 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK-VEVKATANGKTYERQGFVPAAYVKKL 69
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 12 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVKKL 69
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 42 TAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A + L L GD++ R+ G WEG + R+G+FP V++
Sbjct: 13 CAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIF 58
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 122 LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
L L V D++ V G W G + R G+FP V+
Sbjct: 20 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 98 VAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNF 156
V +R++ R LF + + ++L D++ + + EE WW + + G+ P +
Sbjct: 129 VILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPY 188
Query: 157 VEE 159
VE+
Sbjct: 189 VEK 191
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
FD+ + ++L +KGD++ IR + W E +RGM P +V A+A
Sbjct: 143 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSA 201
Query: 99 AM 100
+
Sbjct: 202 LI 203
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 30 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
S++ EA +DY A+ D+L+ KG+ + G WWE + G P ++
Sbjct: 7 STLFEAL--YDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNFVEEI 160
L+ Y D+L H + +L+ E WW R TG PS ++ +
Sbjct: 13 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLAPV 64
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 43 AQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A + L L GD++ R+ G WEG + R+G+FP V++
Sbjct: 29 AYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIF 73
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 122 LELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
L L V D++ V G W G + R G+FP V+
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse
Peroxisomal Biogenesis Factor 13
Length = 93
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLIT-GIRVQSG---GWWEGLLVRENRRGMFPDNFVRV 88
+ A E+D+ A +E++ R GD++ ++ Q GW L + G+ P N+V++
Sbjct: 18 VVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQT-TGLIPANYVKI 76
Query: 89 LGE 91
LG+
Sbjct: 77 LGK 79
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
Length = 65
Score = 31.2 bits (69), Expect = 0.41, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWE-GLLVREN-----RRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + + N R+G P +V+ L
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
Score = 30.0 bits (66), Expect = 0.96, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWR--------GRLRDRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ G+ +R G P+ +V+++
Sbjct: 7 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 98 VAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNF 156
V +R++ R LF + + ++L D++ + + EE WW + + G+ P +
Sbjct: 127 VILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPY 186
Query: 157 VEE 159
VE+
Sbjct: 187 VEK 189
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 42 TAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
A + L L G+L+ ++ G WEG +RG FP VR+L + E
Sbjct: 249 NAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLLDQQNPE 300
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 34/152 (22%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
FD+ + ++L +KGD++ IR + W E +RGM P +V A+A
Sbjct: 141 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSA 199
Query: 99 AM-------------RKKPGR------------------RCRVLFSYTPANADE--LELH 125
+ +PG RV+ P D+ L L
Sbjct: 200 LIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALE 259
Query: 126 VNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
V +++ V G W G + G FP V
Sbjct: 260 VGELVKVTKINVSGQWEGECNGKRGHFPFTHV 291
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 31.2 bits (69), Expect = 0.43, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ EA+ +F + + EL L+KGD+I R + GW G L+ ++ G P +++
Sbjct: 2 MFEAAYDFPGSGSPS-ELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
pdb|3O5Z|B Chain B, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
Length = 90
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 26 NHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRV---------------QSGGWWEG 70
+ AG + + + + ++L L GD++ R QS GW G
Sbjct: 5 SMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPG 64
Query: 71 LLVRENRRGMFPDNFVRVLGEAA 93
L R +RG FP +V LG A
Sbjct: 65 LNERTRQRGDFPGTYVEFLGPVA 87
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 98 VAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNF 156
V +R++ R LF + + ++L D++ + + EE WW + + G+ P +
Sbjct: 127 VILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPY 186
Query: 157 VEE 159
VE+
Sbjct: 187 VEK 189
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
FD+ + ++L +KGD++ IR + W E +RGM P +V A+A
Sbjct: 141 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSA 199
Query: 99 AM 100
+
Sbjct: 200 LI 201
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 122 LELHVNDVIDVLSEVEEGWWRGRLR------DRTGVFPSNFVEEI 160
L + DVI VL + +G W+G + DR G FP VE +
Sbjct: 36 LNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE----NRRGMFPDN 84
GS + A +F + + L +R GD+IT + G W+G + +R G FP
Sbjct: 17 GSLKVRALKDF-WNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPG 75
Query: 85 FVRVL 89
V V+
Sbjct: 76 IVEVV 80
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 30.8 bits (68), Expect = 0.49, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 114 YTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVE 158
++ DEL ++ +L+ E + W+R L + G+ PSN++E
Sbjct: 9 FSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
Length = 62
Score = 30.8 bits (68), Expect = 0.54, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWE 69
+DY + E+T++KGD++T + + WW+
Sbjct: 28 YDYQEKSPREVTMKKGDILTLLNSTNKDWWK 58
>pdb|4B4F|A Chain A, Thermobifida Fusca Cel6b(e3) Co-crystallized With
Cellobiose
pdb|4B4F|B Chain B, Thermobifida Fusca Cel6b(e3) Co-crystallized With
Cellobiose
pdb|4B4H|A Chain A, Thermobifida Fusca Cellobiohydrolase Cel6b(e3) Catalytic
Domain
pdb|4B4H|B Chain B, Thermobifida Fusca Cellobiohydrolase Cel6b(e3) Catalytic
Domain
Length = 420
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 86 VRVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEV 136
VR G QV + PGR C L S DEL+ + ++ ID ++++
Sbjct: 67 VRQSGGDPLTIQVVIYNLPGRDCAALASNGELGPDELDRYKSEYIDPIADI 117
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
R LF + + ++L D++ + + EE WW D + G+ P +VE+
Sbjct: 5 RALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEK 56
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 42 TAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A + L L G+L+ ++ G WEG +RG FP VR+L
Sbjct: 116 NAYDKTALALEVGELVKVTKINMSGQWEGEC--NGKRGHFPFTHVRLL 161
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 34/152 (22%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA---- 94
FD+ + ++L +KGD++ IR + W + +RGM P +V ++A
Sbjct: 8 FDFNGNDDEDLPFKKGDILK-IRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPSSASVST 66
Query: 95 ---------ETQVAMRKKPGR------------------RCRVLFSYTPANADE--LELH 125
Q +PG RV+ P D+ L L
Sbjct: 67 LTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPFYARVIQKRVPNAYDKTALALE 126
Query: 126 VNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
V +++ V G W G + G FP V
Sbjct: 127 VGELVKVTKINMSGQWEGECNGKRGHFPFTHV 158
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRENRRGMFPDNFV 86
GS V +DY A +L+ KG+ + G WWE + G P N+V
Sbjct: 3 GSGVTLFVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYV 61
>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The
P85beta Subunit Of Phosphatidylinositol 3-Kinase From
H.Sapiens, Northeast Structural Genomics Consortium
Target Hr5531e
Length = 88
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRV---------------QSGGWWEGLL 72
AG + + + + ++L L GD++ R QS GW GL
Sbjct: 2 AGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLN 61
Query: 73 VRENRRGMFPDNFVRVLG 90
R +RG FP +V LG
Sbjct: 62 ERTRQRGDFPGTYVEFLG 79
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 114 YTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
YT + DE+ ++V+ + EGWW R + G P++++++
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKK 62
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
YT+Q DE+ KG + IR GWW + + G P ++++
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWW--YIRYLGKEGWAPASYLK 61
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 43 AQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A + L L G+L+ ++ G WEG +RG FP VR+L
Sbjct: 32 AYDKTALALEVGELVKVTKINMSGQWEGEC--NGKRGHFPFTHVRLL 76
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLG 90
FD+ + ++L +KGD++ IR + W E +RGM P +V G
Sbjct: 8 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYVEKYG 58
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLG 90
FD+ + ++L +KGD++ IR + W E +RGM P +V G
Sbjct: 10 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYVEKYG 60
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 43 AQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A + L L G+L+ ++ G WEG +RG FP VR+L
Sbjct: 19 AYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLL 63
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of
C-Crkii
Length = 76
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 42 TAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A + L L G+L+ ++ G WEG +RG FP VR+L
Sbjct: 21 NAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLL 66
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW--RGRLRDRTGVFPSNFVEEI 160
+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 62
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN----RRGMFPDNFVRVL 89
+D+ + +EL L +GD++ GW LV EN + G+ P+ FV +
Sbjct: 12 YDFEPENDNELRLAEGDIVFISYKHGQGW----LVAENESGSKTGLVPEEFVSYI 62
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 29 GSSVIEASVEFDYTAQE-ADELTLRKGDLITGIRVQS-GGWWEGLLVRENRRGMFPDNFV 86
GS + F + A + + L+ ++GDLIT + ++ GW G + RG FP ++
Sbjct: 4 GSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYT 63
Query: 87 RVL 89
RVL
Sbjct: 64 RVL 66
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With
A Herpesviral Ligand
Length = 65
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+ Y D+L+ +KG+ + + + G WW+ + + G P N+V L
Sbjct: 14 YPYDGIHPDDLSFKKGEKMKVLE-EHGEWWKAKSLLTKKEGFIPSNYVAKL 63
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLG 90
FD+ + ++L +KGD++ IR + W E +RGM P +V G
Sbjct: 7 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYVEKYG 57
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 3 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 55
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLG 90
FD+ + ++L +KGD++ IR + W E +RGM P +V G
Sbjct: 8 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYVEKYG 58
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical
Protein Flj21522
Length = 68
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
G + +VL+ + N EL + + ++VL + W R+G PSN +E +
Sbjct: 7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE--NRRGMFPDNF 85
+GSS ++ V +++ A+ ELT+ +G+ + + S WW LV+ R G P N
Sbjct: 3 SGSSGLKMQVLYEFEARNPRELTVVQGEKLE-VLDHSKRWW---LVKNEAGRSGYIPSNI 58
Query: 86 VRVL 89
+ L
Sbjct: 59 LEPL 62
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
Length = 68
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 38 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN---RRGMFPDNFVRVLG 90
+F Y + D+L K I V+ W+ G N G+FP +FV V G
Sbjct: 13 QFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG 68
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 38 EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN---RRGMFPDNFVRVLG 90
+F Y + D+L K I V+ W+ G N G+FP +FV V G
Sbjct: 14 QFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG 69
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
E ++++ +L KGD++T + V W + R G+ P N+V+
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ + ++L +KGD++ IR + W E +RGM P +V
Sbjct: 10 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYV 56
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ + ++L +KGD++ IR + W E +RGM P +V
Sbjct: 8 FDFNGNDEEDLPFKKGDILR-IRDKPEEQWWNAEDSEGKRGMIPVPYV 54
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
A S E ++++ +L KGD++T + V W + R G+ P N+V+
Sbjct: 7 AWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFVRV 88
+E V + Y ++ DE+T+ GD I+ + +G GW + G+ P ++R+
Sbjct: 2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>pdb|3EGL|A Chain A, Crystal Structure Of Degv Family Protein Cg2579 From
Corynebacterium Glutamicum
pdb|3EGL|B Chain B, Crystal Structure Of Degv Family Protein Cg2579 From
Corynebacterium Glutamicum
pdb|3EGL|C Chain C, Crystal Structure Of Degv Family Protein Cg2579 From
Corynebacterium Glutamicum
Length = 277
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 1 MEEALRQAVDEGDFEQAKELSPSRCNHAGSSVIEASVEFDYTAQEADELT 50
+EE LR A+ EG + ++ P+ H+G + S F A +A EL+
Sbjct: 224 LEELLRNALPEGSSFXSVDIDPTLAVHSGPGAVSVSAVF---ANQAPELS 270
>pdb|1PNJ|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
pdb|2PNI|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
Length = 86
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 147
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 7 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTG 66
Query: 148 RTGVFPSNFVEEI 160
G FP +VE I
Sbjct: 67 ERGDFPGTYVEYI 79
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 39 FDYTAQEADELTLRKGDLIT---GIRVQSG------------GWWEGLLVRENRRGMFPD 83
+DY + +++ L GD++T G V G GW G RG FP
Sbjct: 14 YDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTGERGDFPG 73
Query: 84 NFVRVLG 90
+V +G
Sbjct: 74 TYVEYIG 80
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
Y +L KG+ + I QSG WW+ + + G P NFV
Sbjct: 21 YEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQEGFIPFNFV 65
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
Y +L KG+ + I QSG WW+ + + G P NFV
Sbjct: 21 YEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQEGFIPFNFV 65
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 31/67 (46%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAA 93
E ++++ +L KGD++T + V W + R G+ P N+V+
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 72
Query: 94 AETQVAM 100
A T++++
Sbjct: 73 AGTKLSL 79
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
Length = 167
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
Y +L KG+ + I QSG WW+ + + G P NFV
Sbjct: 13 YEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQEGFIPFNFV 57
>pdb|3I5R|A Chain A, Pi3k Sh3 Domain In Complex With A Peptide Ligand
pdb|3I5S|A Chain A, Crystal Structure Of Pi3k Sh3
pdb|3I5S|B Chain B, Crystal Structure Of Pi3k Sh3
pdb|3I5S|C Chain C, Crystal Structure Of Pi3k Sh3
pdb|3I5S|D Chain D, Crystal Structure Of Pi3k Sh3
Length = 83
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 147
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 148 RTGVFPSNFVEEI 160
G FP +VE I
Sbjct: 65 ERGDFPGTYVEYI 77
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN---RRGMFPDNFV 86
+D+ ++ +EL+ R GD+ R + WW LL +G P N++
Sbjct: 17 WDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYL 67
>pdb|1PKS|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
pdb|1PKT|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
Length = 79
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 147
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 148 RTGVFPSNFVEEI 160
G FP +VE I
Sbjct: 65 ERGDFPGTYVEYI 77
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
EA+ +F + + EL L+KGD++ R + GW L+ ++ G P ++
Sbjct: 6 FEAAYDFPGSGSSS-ELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 58
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
EA+ +F + + EL L+KGD++ R + GW L+ ++ G P ++
Sbjct: 5 FEAAYDFPGSGSSS-ELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
EA+ +F + + EL L+KGD++ R + GW L+ ++ G P ++
Sbjct: 5 FEAAYDFPGSGSSS-ELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|1PHT|A Chain A, Phosphatidylinositol 3-Kinase P85-Alpha Subunit Sh3
Domain, Residues 1-85
Length = 85
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDV---------LSEVEE------GWWRG--RLRD 147
G + R L+ Y ++++LH+ D++ V S+ +E GW G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 148 RTGVFPSNFVEEI 160
G FP +VE I
Sbjct: 65 ERGDFPGTYVEYI 77
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 39 FDYTAQEADELTLRKGDLIT---GIRVQSG------------GWWEGLLVRENRRGMFPD 83
+DY + +++ L GD++T G V G GW G RG FP
Sbjct: 12 YDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPG 71
Query: 84 NFVRVLG 90
+V +G
Sbjct: 72 TYVEYIG 78
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
Y +L KG+ + I QSG WW+ + + G P NFV
Sbjct: 15 YEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQEGFIPFNFV 59
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
Y +L KG+ + I QSG WW+ + + G P NFV
Sbjct: 9 YEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQEGFIPFNFV 53
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
Y +L KG+ + I QSG WW+ + + G P NFV
Sbjct: 15 YEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQEGFIPFNFV 59
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+GSS E DY A + +L+ +G+ I +R + WW G R G P N V
Sbjct: 3 SGSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWG--ERAGCCGYIPANHV 59
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 111 LFSYTPANADELELHVNDVI------DVLSEVEEGWWRGRLRDRTGVFPSNFV 157
++++ N +EL + N + DV E WW + + G PSN++
Sbjct: 19 VYTFKARNPNELSVSANQKLKILEFKDVTGNTE--WWLAEVNGKKGYVPSNYI 69
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 113 SYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFV 157
+Y E+ + VL + E GWW R + G PS+++
Sbjct: 16 AYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYL 60
>pdb|2I7G|A Chain A, Crystal Structure Of Monooxygenase From Agrobacterium
Tumefaciens
pdb|2I7G|B Chain B, Crystal Structure Of Monooxygenase From Agrobacterium
Tumefaciens
Length = 376
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 31 SVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE-NRRGMFP 82
S IE+ F Y ++ D L K DL+ +R Q W G N RG++P
Sbjct: 135 SFIESYPLFGYDLEDYDVLFAEKLDLLLALREQEVVTWSGTKHPAINGRGVYP 187
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 68
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 112 FSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---RTGVFPSNFVEEIPA 162
+ + N+ EL + DV++VL + + WW ++RD + G P N + PA
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLDDSRK-WW--KVRDPAGQEGYVPYNILTPYPA 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,752,357
Number of Sequences: 62578
Number of extensions: 226771
Number of successful extensions: 1195
Number of sequences better than 100.0: 298
Number of HSP's better than 100.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 534
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)