RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4221
(200 letters)
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 137 bits (345), Expect = 4e-41
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 3/151 (1%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
DY E+ L GD++ + GWW + +RG P +F+ L
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFC--QMKAKRGWIPASFLEPLDSPDE 71
Query: 95 ETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPS 154
G + +YT DE+ L + ++V+ ++ +GWW R D TG FPS
Sbjct: 72 TED-PEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPS 130
Query: 155 NFVEEIPADTMTAESRHRKESNNNEADPAKA 185
++++ D A+ + ++ + + A
Sbjct: 131 MYLQKSGQDVSQAQRQIKRGAPPRRSSIRNA 161
Score = 79.3 bits (195), Expect = 9e-19
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
+ R + Y + E+ L DV++V+ + E GWW +++ + G P++F+E + +
Sbjct: 10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSP 69
Query: 164 TMTAESRHRKESNNNEADPAKAL 186
T + N +P A+
Sbjct: 70 DETEDPEP-----NYAGEPYVAI 87
Score = 64.2 bits (156), Expect = 4e-13
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 15 EQAKELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR 74
E + + YTA E DE++L +G+ + I GWW
Sbjct: 64 EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK-- 121
Query: 75 ENRRGMFPDNFVRVLGEAAAETQVAMRKKP 104
++ G FP +++ G+ ++ Q +++
Sbjct: 122 DDVTGYFPSMYLQKSGQDVSQAQRQIKRGA 151
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 115 bits (288), Expect = 2e-31
Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 31/173 (17%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
+ + + F +T + +L +G+ + + + WWE G+
Sbjct: 136 ASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNAL-GTTGL 194
Query: 81 FPDNFVRVLGEAA----------------------------AETQVAMRKKPGRRCRVLF 112
P N+V++ E + + ++ + + +V F
Sbjct: 195 VPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTF 254
Query: 113 SYTPANAD--ELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
P D +L + + V ++ G ++ L + G P ++
Sbjct: 255 DRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVS 307
Score = 101 bits (253), Expect = 2e-26
Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 11/192 (5%)
Query: 15 EQAKELSPSRCNHAGSSVIEASV---EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGL 71
E+A +L G+ ++ S E+ T +EADE LI + G
Sbjct: 51 EEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAG 110
Query: 72 LVRENRRGMFPDN-----FVRVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHV 126
+ + FPD ++ A A +K F +T +L
Sbjct: 111 V--KIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQ 168
Query: 127 NDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPADTMTAESRHRKESNNNEADPAKA 185
+ +++LS+ + WW R TG+ P+N+V+ S+ +S+ +
Sbjct: 169 GERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAE 228
Query: 186 LRRSGRGMVEGA 197
S +
Sbjct: 229 RFSSASTSSDNI 240
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 113 bits (284), Expect = 5e-31
Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 34/185 (18%)
Query: 18 KELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENR 77
+ S FD+ + ++L +KGD++ WW E +
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGK 178
Query: 78 RGMFPDNFVRVLGEAAAETQVAMRKKP--------------------------------- 104
RGM P +V A+A +
Sbjct: 179 RGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPI 238
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
R + L L V +++ V G W G + G FP V +
Sbjct: 239 YARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQN 298
Query: 165 MTAES 169
+
Sbjct: 299 PEEDF 303
Score = 64.6 bits (156), Expect = 9e-13
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVE 158
+R++ R LF + + ++L D++ + + EE WW + + G+ P +VE
Sbjct: 129 LRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188
Query: 159 EIPADTMTAESRHRKESNNNEADPAKALRRS 189
+ + + + + P
Sbjct: 189 KYRPASASVSALIGGNQEGSHPQPLGGPEPG 219
Score = 64.6 bits (156), Expect = 9e-13
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
+ A + L L G+L+ ++ G WEG +RG FP VR+L +
Sbjct: 239 YARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLLDQ 296
Query: 92 AAAETQVA 99
E +
Sbjct: 297 QNPEEDFS 304
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 105 bits (264), Expect = 5e-30
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 77 RRGMFPDNFVRVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEV 136
++G FP + V++LG ++ A P + ++ Y N DEL +I+V+++
Sbjct: 8 QKGWFPASHVKLLGPSSERATPA--FHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKD 65
Query: 137 EEGWWRGRLRDRTGVFPSNFVEEIPADT 164
+ WW+G + TG+FPSN+V+ +
Sbjct: 66 DPDWWQGEINGVTGLFPSNYVKMTTDSS 93
Score = 74.0 bits (182), Expect = 9e-18
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
S R A V + +DY A DEL+ KG LI + WW+G + G+
Sbjct: 23 SSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGL 80
Query: 81 FPDNFVRVLGEAAAETQ 97
FP N+V++ +++ +
Sbjct: 81 FPSNYVKMTTDSSGPSS 97
Score = 26.2 bits (58), Expect = 3.3
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 148 RTGVFPSNFVEEIPADTMTAESRHRKESNNNEADPAKAL 186
+ G FP++ V+ + S R + A+
Sbjct: 8 QKGWFPASHVKLLGP------SSERATPAFHPVCQVIAM 40
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 100 bits (252), Expect = 2e-28
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
GRRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 5 SSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 64
Score = 75.7 bits (187), Expect = 8e-19
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS V F Y Q DEL L+ GD+I + GWWEG+L + GMFP NF++
Sbjct: 3 SGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIK 60
Query: 88 VL 89
L
Sbjct: 61 EL 62
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 100 bits (252), Expect = 2e-28
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
++ RRC+V FSY P N DELEL V D+I+V+ EVEEGWW G L +TG+FPSNF++E+
Sbjct: 15 ERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 74
Query: 162 ADTMTAESRHRKESNNN 178
++ + +++
Sbjct: 75 GESDELGISQDEHHHHH 91
Score = 72.5 bits (178), Expect = 2e-17
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
F Y Q DEL L+ GD+I + GWWEG+L + GMFP NF++ L + E +
Sbjct: 25 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKELSGESDELGI 82
Query: 99 A 99
+
Sbjct: 83 S 83
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 99.6 bits (249), Expect = 4e-28
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+
Sbjct: 5 SKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64
Score = 73.4 bits (181), Expect = 6e-18
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
GS + V F+Y Q DEL L+ GD+I GWW G L N+ G+FP NFV+
Sbjct: 3 LGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVK 60
Query: 88 VL 89
L
Sbjct: 61 EL 62
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 106 bits (264), Expect = 4e-28
Identities = 29/168 (17%), Positives = 48/168 (28%), Gaps = 43/168 (25%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL--------- 89
+D+ +A++L +KG+++ I WW ++ R GM P +V L
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARN-KDGRVGMIPVPYVEKLVRSSPHGKH 190
Query: 90 ---------------------------------GEAAAETQVAMRKKPGRRCRVLFSYTP 116
G A +
Sbjct: 191 GNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCA 250
Query: 117 ANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
+ L L V D++ V G W G + R G+FP V+
Sbjct: 251 YDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 298
Score = 65.0 bits (157), Expect = 6e-13
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 14 FEQAKELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV 73
++P G +A + A + L L GD++ R+ G WEG +
Sbjct: 221 GSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV- 279
Query: 74 RENRRGMFPDNFVRVLGEAAAET 96
R+G+FP V++ +
Sbjct: 280 -NGRKGLFPFTHVKIFDPQNPDE 301
Score = 63.1 bits (152), Expect = 2e-12
Identities = 19/126 (15%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 67 WWEGLLVRENRRGMFPDNFVRVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHV 126
+++ + + + + + + R L+ + +A++L
Sbjct: 87 FYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKK 146
Query: 127 NDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIPADTMTAESRHRKESNNNEADPAKA 185
+++ ++ + EE WW R +D R G+ P +VE++ + + +R ++ +PA A
Sbjct: 147 GEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHA 206
Query: 186 LRRSGR 191
+
Sbjct: 207 YAQPQT 212
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 99.2 bits (248), Expect = 5e-28
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
R+C+VLF Y P N DELEL V D+ID+ EVEEGWW G L ++ G+FPSNFV+E+ +
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE 59
Score = 70.7 bits (174), Expect = 6e-17
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
F+Y Q DEL L+ GD+I GWW G L N+ G+FP NFV+ L
Sbjct: 8 FEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKEL 56
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 98.2 bits (245), Expect = 2e-27
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
GR C+ L+S+ DEL L D++ + + EEGWW G L + G FP+ +VEE+P+
Sbjct: 5 SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPS 64
Query: 163 DTMTAESRHRKES 175
+ ++ S
Sbjct: 65 NAGNTATKASGPS 77
Score = 74.3 bits (183), Expect = 3e-18
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS + + A++ DEL L KGD++ + GWW G L ++G FP +V
Sbjct: 3 SGSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVE 60
Query: 88 VLGEAAAETQ 97
L A T
Sbjct: 61 ELPSNAGNTA 70
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 95.3 bits (238), Expect = 2e-26
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
G RVLF + P +EL++ +++ VL + + W + G+ P N++E +
Sbjct: 5 SSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63
Score = 69.9 bits (172), Expect = 1e-16
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS V F + + +EL + G+++ ++ + W + ++G+ P N++
Sbjct: 3 SGSSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATV--MFNGQKGLVPCNYLE 60
Query: 88 VL 89
+
Sbjct: 61 PV 62
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 93.8 bits (234), Expect = 7e-26
Identities = 25/59 (42%), Positives = 28/59 (47%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 4 NSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62
Score = 75.3 bits (186), Expect = 9e-19
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ +S + +F++ DEL+ KGD+I RV+ GGWWEG R G FP N+VR
Sbjct: 2 SANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVR 59
Query: 88 VL 89
+
Sbjct: 60 EI 61
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 94.3 bits (235), Expect = 7e-26
Identities = 25/69 (36%), Positives = 33/69 (47%)
Query: 101 RKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ F++ N DEL + D+I V E GWW G L RTG FPSN+V EI
Sbjct: 6 SGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI 65
Query: 161 PADTMTAES 169
+ + S
Sbjct: 66 KSSERSGPS 74
Score = 77.4 bits (191), Expect = 2e-19
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GS + F++ DEL++ KGD+I RV+ GGWWEG L R G FP N+VR
Sbjct: 6 SGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL--NGRTGWFPSNYVR 63
Query: 88 VLGEAAAET 96
+ +
Sbjct: 64 EIKSSERSG 72
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 93.8 bits (234), Expect = 8e-26
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
G L+ + P ++LE+ D+I +L + E WW+G+++DR G FP+NFV+ +
Sbjct: 6 SGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP 65
Query: 164 T 164
+
Sbjct: 66 S 66
Score = 71.1 bits (175), Expect = 4e-17
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS + + QE ++L +R GD+IT + + WW+G + ++R G FP NFV+
Sbjct: 3 SGSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKI--QDRIGFFPANFVQ 60
Query: 88 VL 89
L
Sbjct: 61 RL 62
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 93.5 bits (233), Expect = 9e-26
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
+ R L+ YT N DEL+L D+++V+ E E+GWW + G P +++E++
Sbjct: 7 GAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSGP 66
Query: 164 T 164
+
Sbjct: 67 S 67
Score = 68.4 bits (168), Expect = 6e-16
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 28 AGSSVIE-ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+GSS + +DYTAQ DEL L GD++ I GWW +RG P +++
Sbjct: 3 SGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER--NGQRGFVPGSYL 60
Query: 87 RVL 89
L
Sbjct: 61 EKL 63
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 93.0 bits (232), Expect = 1e-25
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+C+ L++Y + DEL + ND+ID++ E GWW GRLR + G+FP+N+V +I
Sbjct: 4 GSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
Score = 69.9 bits (172), Expect = 1e-16
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+ Y AQ+ DEL+ D+I I+ GWW G L ++G+FP+N+V +
Sbjct: 12 YAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL--RGKQGLFPNNYVTKI 60
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 93.0 bits (232), Expect = 1e-25
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
+ R+ F + + EL L D++ + EV++ W G R G+FP+N+VE +P +
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE 59
Score = 69.9 bits (172), Expect = 1e-16
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
FD+ AQ ELTL+KGD++ + W EG R G+FP N+V VL
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEH--HGRLGIFPANYVEVL 56
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 92.3 bits (230), Expect = 2e-25
Identities = 26/57 (45%), Positives = 29/57 (50%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
G R F++ N DEL DVI V E GWW G RTG FPSN+V EI
Sbjct: 3 LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
Score = 75.0 bits (185), Expect = 1e-18
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
G +F++ DEL+ KGD+I RV+ GGWWEG R G FP N+VR
Sbjct: 1 GPLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVRE 58
Query: 89 L 89
+
Sbjct: 59 I 59
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 92.0 bits (229), Expect = 4e-25
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
+ + ++ YT DEL +I V+ + ++GW+ G + TG+FP N+VE I
Sbjct: 14 RSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIS 73
Query: 162 ADT 164
+
Sbjct: 74 GPS 76
Score = 69.3 bits (170), Expect = 3e-16
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DYT + DEL+ ++G +I I+ GW+EG++ G+FP N+V +
Sbjct: 24 YDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM--NGVTGLFPGNYVESI 72
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 91.5 bits (228), Expect = 5e-25
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
PG + + L+ Y DEL D I V + GWW G L + G P+N+V++I
Sbjct: 2 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
Score = 70.7 bits (174), Expect = 6e-17
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY AQ DELT ++GD I + GWWEG L +RG P N+V+ +
Sbjct: 10 YDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQDI 58
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 91.6 bits (228), Expect = 7e-25
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 93 AAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVF 152
A M C+ L+ + P N EL D+I + ++++E W+ G L ++G F
Sbjct: 1 GAMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFF 60
Query: 153 PSNFVEEIP 161
P ++V+ +
Sbjct: 61 PLSYVQVLV 69
Score = 71.1 bits (175), Expect = 6e-17
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+D+ + EL R+GDLIT W+EG+L + G FP ++V+VL
Sbjct: 20 YDFEPENDGELGFREGDLITLTNQIDENWYEGML--HGQSGFFPLSYVQVL 68
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 91.2 bits (227), Expect = 9e-25
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIPA 162
G R ++ Y P N DELEL D +DV+ + ++GW+ G R + G FP N+V +
Sbjct: 7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG 66
Score = 78.1 bits (193), Expect = 1e-19
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS + Y Q DEL LR+GD + ++ GW+ G+ R + G FP N+V
Sbjct: 3 SGSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62
Query: 88 VL 89
+
Sbjct: 63 PV 64
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 91.2 bits (227), Expect = 9e-25
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
GRR + L + + DEL ND+I ++S+ +E W G L G FP+ FVE +
Sbjct: 6 SGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER 65
Query: 164 T 164
+
Sbjct: 66 S 66
Score = 74.3 bits (183), Expect = 4e-18
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS A D+ + DEL RK D+IT I + W G L RG FP FV
Sbjct: 3 SGSSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGEL--NGLRGWFPAKFVE 60
Query: 88 VLGEAAAETQVA 99
VL E + E +A
Sbjct: 61 VLDERSKEYSIA 72
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 91.3 bits (227), Expect = 1e-24
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 92 AAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV 151
++ +++ + K R+ R L+ + +EL ++I VL + + WW+G G+
Sbjct: 4 GSSGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGL 63
Query: 152 FPSNFVEEIPADTMTAESR 170
FPSNFV A +
Sbjct: 64 FPSNFVTTNLNIETEAAAV 82
Score = 72.5 bits (178), Expect = 3e-17
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
S S + +D+ A E +ELT + G++I + WW+G G+
Sbjct: 6 SGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGEN--HRGIGL 63
Query: 81 FPDNFVRVLGEAAAETQVA 99
FP NFV E
Sbjct: 64 FPSNFVTTNLNIETEAAAV 82
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 90.8 bits (226), Expect = 1e-24
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
CR L+ + P N EL D+I + ++++E W+ G + +G FP N+VE I
Sbjct: 2 DQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIV 59
Score = 70.7 bits (174), Expect = 6e-17
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+D+ + EL ++GD+IT W+EG++ G FP N+V V+
Sbjct: 10 YDFEPENQGELGFKEGDIITLTNQIDENWYEGMI--HGESGFFPINYVEVI 58
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 90.7 bits (226), Expect = 1e-24
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
G R + L +Y N +L+ + DVI + +++E W++G + +G+FP++ VE I +
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGPS 66
Score = 71.5 bits (176), Expect = 3e-17
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS A +Y + +L KGD+I R W++G + G+FP + V
Sbjct: 3 SGSSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI--NGVSGIFPASSVE 60
Query: 88 VL 89
V+
Sbjct: 61 VI 62
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 90.9 bits (226), Expect = 1e-24
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADTM 165
R F+ +P + D L+L D+ID++S+ G W G L ++ G F +V+ + +
Sbjct: 12 ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPS 71
Query: 166 TA 167
+
Sbjct: 72 SG 73
Score = 70.1 bits (172), Expect = 1e-16
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
+F + + D L L+KGD+I I G W GLL N+ G F +V VL
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLL--NNKVGTFKFIYVDVLSS 68
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 90.0 bits (224), Expect = 2e-24
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
GR R F + EL L D++ + ++++ W+ G R G+FP ++E +
Sbjct: 4 GSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLS 63
Score = 72.6 bits (179), Expect = 1e-17
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS A +FD+ AQ EL L+KGD++ + W+EG R G+FP ++
Sbjct: 3 SGSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH--HGRVGIFPRTYIE 60
Query: 88 VL 89
+L
Sbjct: 61 LL 62
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 90.0 bits (224), Expect = 3e-24
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 94 AETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFP 153
M + R LF +T + EL DVI +LS + + W G +R TG+FP
Sbjct: 7 HHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFP 66
Query: 154 SNFVEEIP 161
+FV+ +
Sbjct: 67 LSFVKILK 74
Score = 68.9 bits (169), Expect = 4e-16
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
FD+T EL + GD+I + + W EG + G+FP +FV++L + E
Sbjct: 25 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKILKDFPEE 79
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 90.2 bits (224), Expect = 3e-24
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
V F+Y DEL L + V+ + +GWWRG + G FPSN+V E
Sbjct: 14 YDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEG 73
Query: 162 ADTMTAES 169
+
Sbjct: 74 DSPLGDHV 81
Score = 76.3 bits (188), Expect = 8e-19
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 30 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+ A V+F+Y A+ DEL+L KG + + S GWW G + G FP N+V
Sbjct: 15 DLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY--NGQVGWFPSNYVTEE 72
Query: 90 GEAAAETQVA 99
G++ V
Sbjct: 73 GDSPLGDHVG 82
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 89.6 bits (223), Expect = 3e-24
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
G CR L+ + P N EL D+I + ++++E W+ G L +G FP N+VE + A
Sbjct: 6 SGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA 64
Score = 73.8 bits (182), Expect = 5e-18
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS +D+ + EL ++GD+IT W+EG+L G FP N+V
Sbjct: 3 SGSSGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGML--HGHSGFFPINYVE 60
Query: 88 VL 89
+L
Sbjct: 61 IL 62
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 89.2 bits (222), Expect = 5e-24
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
G+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSGP 65
Query: 164 T 164
+
Sbjct: 66 S 66
Score = 73.4 bits (181), Expect = 6e-18
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS + + + DEL +GD+I + WW+G + R G+ P N+V
Sbjct: 3 SGSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVA 60
Query: 88 VL 89
Sbjct: 61 EQ 62
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 88.8 bits (221), Expect = 5e-24
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
K G + LFSY ++LE D+I VLS+V E W G + + G+FP FVE+
Sbjct: 3 KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61
Score = 64.5 bits (158), Expect = 1e-14
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
F Y A + ++L ++GD+I + + W EG + + G+FP FV
Sbjct: 12 FSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFV 57
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 88.7 bits (221), Expect = 6e-24
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
V F Y + DEL + V ++I + + + GWW G++ R G+FP NFV EI
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
Score = 79.9 bits (198), Expect = 1e-20
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
++EA VEFDY AQ DELT+ G++IT IR + GGWWEG + RRG+FPDNFVR + +
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQI--NGRRGLFPDNFVREIKK 58
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 88.9 bits (221), Expect = 7e-24
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 101 RKKPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVE 158
R K C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+
Sbjct: 5 RTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
Query: 159 EIPADT 164
+P D
Sbjct: 65 LLPPDF 70
Score = 67.0 bits (164), Expect = 2e-15
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQS--GGWWEGLLVRENRRGMFPDNF 85
S V F Y AQ DELT+++GD++T I GWWEG L RRG+FPDNF
Sbjct: 5 RTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNF 62
Query: 86 VRVL 89
V++L
Sbjct: 63 VKLL 66
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 88.0 bits (219), Expect = 1e-23
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ + LF + P + EL DVI ++++ + WW G+L +R G+FPSN+V
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57
Score = 67.6 bits (166), Expect = 9e-16
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
FD+ QE+ EL ++GD+IT I WWEG L NRRG+FP N+V
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVC 55
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 88.1 bits (219), Expect = 1e-23
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEE 159
G C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+
Sbjct: 4 GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
Query: 160 IPADT 164
+ +
Sbjct: 64 LSGPS 68
Score = 70.4 bits (173), Expect = 9e-17
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRRGMFPDNF 85
+GSS V F Y AQ DELT+++GD++T I GWWEG L RRG+FPDNF
Sbjct: 3 SGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNF 60
Query: 86 VRVL 89
V++L
Sbjct: 61 VKLL 64
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 88.1 bits (219), Expect = 2e-23
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 89 LGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR 148
+G + R+ R ++ + A +EL ++I VL + + WW+G
Sbjct: 1 MGHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQG 60
Query: 149 TGVFPSNFVEE 159
G+FPSNFV
Sbjct: 61 IGLFPSNFVTA 71
Score = 67.3 bits (165), Expect = 2e-15
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+ +D+ A E +ELT + G++IT + WW+G G+FP NFV
Sbjct: 13 HQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGET--HQGIGLFPSNFV 69
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 87.6 bits (218), Expect = 2e-23
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
R R L+ + DEL +V++VL WW GRL ++ G+FP+N+V +
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
Score = 66.8 bits (164), Expect = 1e-15
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+D+ A E DEL R G+++ + + WW G L N+ G+FP N+V +
Sbjct: 8 YDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAPM 56
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 88.2 bits (219), Expect = 2e-23
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSNFVEEIP 161
+ + R L Y ++ L ND+I + + +E W+ G+L + G FP + VE +
Sbjct: 8 EFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILL 67
Query: 162 ADTMTAESRH 171
+D + H
Sbjct: 68 SDVPPPQPVH 77
Score = 68.2 bits (167), Expect = 9e-16
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQ 97
DY + L ++ D+IT + Q W+ G L + G FP + V +L Q
Sbjct: 17 KDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQL--NGKEGSFPVDHVEILLSDVPPPQ 74
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 87.3 bits (217), Expect = 2e-23
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
RR R L+ + +EL ++I VL + + WW+G TG+FPSNFV
Sbjct: 4 MARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60
Score = 71.9 bits (177), Expect = 2e-17
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
AG +D+ A E +ELT + G+LIT + WW+G G+FP NFV
Sbjct: 1 AGHMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNFV 57
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 87.8 bits (218), Expect = 2e-23
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEIP 161
G +++ + EL L DV+ + S + ++GWW+G R G FPS +VEE
Sbjct: 6 SGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65
Query: 162 ADT 164
+
Sbjct: 66 IQS 68
Score = 69.7 bits (171), Expect = 2e-16
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRRGMFPDNF 85
+GSS A +++ A++ EL+LR+GD++ G GWW+G R G FP +
Sbjct: 3 SGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET--NGRIGWFPSTY 60
Query: 86 VRVLGEAAAET 96
V G + +
Sbjct: 61 VEEEGIQSGPS 71
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 87.9 bits (218), Expect = 2e-23
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-----TGVFPSNFV 157
G +V +Y + +++L L +I +L + GWW+G L+ R G FP++ V
Sbjct: 5 SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64
Query: 158 EEIPADTMTAESRH 171
+ + + A
Sbjct: 65 KLLGPSSERASGPS 78
Score = 77.1 bits (190), Expect = 4e-19
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV---RENRRGMFPDN 84
+GSS A V Y A +++L+L G LI ++ + GWW+G L ++ ++G FP +
Sbjct: 3 SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62
Query: 85 FVRVLGEAAAET 96
V++LG ++
Sbjct: 63 HVKLLGPSSERA 74
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 87.4 bits (217), Expect = 3e-23
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
G L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE +
Sbjct: 16 LGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG 75
Score = 76.2 bits (188), Expect = 7e-19
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
S + + I A +DY A DE++ D+IT I + GWW G+ + R G+
Sbjct: 6 SGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC--KGRYGL 63
Query: 81 FPDNFVRVL 89
FP N+V +
Sbjct: 64 FPANYVELR 72
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 87.5 bits (217), Expect = 5e-23
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEV--EEGWWRGRLRDRTGVFPSNFVEEI 160
R L+ + N DE+ + D+I V + E GW G + G FP N+VE++
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKM 62
Query: 161 PADT 164
P+
Sbjct: 63 PSSE 66
Score = 70.2 bits (172), Expect = 2e-16
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRRGMFPDNF 85
S + + A+ DE++ GD+I G GW G + G FP N+
Sbjct: 1 GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNY 58
Query: 86 VRVLGEAAAETQVAMRKKP 104
V + + E V+ +K
Sbjct: 59 VEKMPSSENEKAVSPKKAL 77
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 86.5 bits (215), Expect = 5e-23
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVI-DVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
P R+ + L++ + EL V +V E GW G L +TG+ P N+VE +
Sbjct: 8 TPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67
Query: 162 ADT 164
+
Sbjct: 68 GPS 70
Score = 68.8 bits (169), Expect = 3e-16
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFV 86
+G+ +A + A+ EL+ G + + Q GW EG L + G+ P+N+V
Sbjct: 6 SGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYV 63
Query: 87 RVL 89
L
Sbjct: 64 EFL 66
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 86.6 bits (215), Expect = 6e-23
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 101 RKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR---DRTGVFPSNFV 157
RR + ++ N DEL +VI V E ++ WW G + +R GVFP +FV
Sbjct: 6 SGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
Query: 158 EEIP 161
+
Sbjct: 66 HILS 69
Score = 69.7 bits (171), Expect = 2e-16
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV-RENRRGMFPDNFVRVLGEAAAET 96
+D A DELT +G++I + WW G + + R+G+FP +FV +L ++ +
Sbjct: 17 YDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSGPSS 75
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 85.7 bits (213), Expect = 1e-22
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 160
G+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 1 GQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
Score = 70.3 bits (173), Expect = 8e-17
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A +D+ + +EL L +GD++ GW ++ G+ P+ FV +
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 85.7 bits (213), Expect = 1e-22
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEI 160
CR LF YT N DEL ++I ++S+ E GWW+G L + GVFP NF +I
Sbjct: 4 GAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
Score = 66.9 bits (164), Expect = 2e-15
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRRGMFPDNFVRVL 89
F YT DELT R+G++I I ++G GWW+G L + G+FPDNF +
Sbjct: 13 FPYTGTNEDELTFREGEIIHLISKETGEAGWWKGEL--NGKEGVFPDNFAVQI 63
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 86.4 bits (214), Expect = 1e-22
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 90 GEAAAETQVAMRKKPGRRCRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRD 147
G + + + + + + P + L L V D++ V G W G +
Sbjct: 1 GSSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG 60
Query: 148 RTGVFPSNFVEEIPADTMTAES 169
R G+FP V+
Sbjct: 61 RKGLFPFTHVKIFDPQNPDENE 82
Score = 75.6 bits (186), Expect = 1e-18
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
P G +A + A + L L GD++ R+ G WEG + R+G+
Sbjct: 7 GPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGL 64
Query: 81 FPDNFVRVLGEAAAETQ 97
FP V++ +
Sbjct: 65 FPFTHVKIFDPQNPDEN 81
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 85.8 bits (213), Expect = 1e-22
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEIP 161
+ LF Y DEL + +I + + E GWWRG + + FPSN+VEE+
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
Query: 162 ADTMTAE 168
Sbjct: 64 NPEGIHR 70
Score = 67.7 bits (166), Expect = 9e-16
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ + FDY AQ DELT K +I + Q GGWW G ++ FP N+V
Sbjct: 2 SPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVE 60
Query: 88 VLGE 91
+
Sbjct: 61 EMVN 64
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 85.8 bits (213), Expect = 1e-22
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSE--VEEGWWRGRLRDRTGVFPSNFVEEIP 161
C+V+F Y N DEL + D++ ++++ ++ GWW G L R GVFP NFV+ +P
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
Score = 67.7 bits (166), Expect = 1e-15
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRRGMFPDNFVRVLGEA 92
F Y AQ DELT+++GD++T I GWWEG L RRG+FPDNFV++L
Sbjct: 9 FPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLLPPL 62
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 84.9 bits (211), Expect = 1e-22
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
+ R L+++ P DEL D+I + + WW+G + RTG+ PSN+V E
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57
Score = 68.3 bits (168), Expect = 5e-16
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ + + DEL +GD+I + WW+G + R G+ P N+V
Sbjct: 10 YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVA 56
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 85.4 bits (212), Expect = 1e-22
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSE---VEEGWWRGRLRDRTGVFPSNFVEEI 160
G R L+ P +DEL D++ +L + EGWW+ L R G+ P+N ++ +
Sbjct: 6 SGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQIL 65
Query: 161 PA 162
Sbjct: 66 SG 67
Score = 70.0 bits (172), Expect = 2e-16
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIR---VQSGGWWEGLLVRENRRGMFPDN 84
+GSS + A +D +DEL +GD++T + +S GWW+ LL R+G+ P N
Sbjct: 3 SGSSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLL--HGRQGLAPAN 60
Query: 85 FVRVL 89
+++L
Sbjct: 61 RLQIL 65
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 85.4 bits (212), Expect = 2e-22
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFVEE 159
+ L+ Y DEL +I +L+ + ++G+W G R GVFPS VEE
Sbjct: 6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 65
Query: 160 IPAD 163
+ +
Sbjct: 66 LSSG 69
Score = 67.3 bits (165), Expect = 2e-15
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQS---GGWWEGLLVRENRRGMFPDN 84
S V +DY Q DEL+ +G +I + ++ G+WEG R G+FP
Sbjct: 4 GSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEF--NGRIGVFPSV 61
Query: 85 FVRVL 89
V L
Sbjct: 62 LVEEL 66
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 84.9 bits (211), Expect = 2e-22
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
R LF +T + EL DVI +LS + + W G +R TG+FP +FV+ +
Sbjct: 4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
Score = 68.7 bits (169), Expect = 4e-16
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
FD+T EL + GD+I + + W EG + G+FP +FV++L
Sbjct: 11 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKIL 59
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 84.9 bits (211), Expect = 2e-22
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
L+ + P +L L D + +L ++ W++G RTG+FP+N+V+
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
Score = 65.6 bits (161), Expect = 5e-15
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ + Q+ +L L+ GD + + S W++G R G+FP N+V+
Sbjct: 9 YQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVK 55
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 85.0 bits (211), Expect = 2e-22
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR-TGVFPSNFVEEIP 161
GR + L+ Y +DEL +I +S+ GWW+G R FPSN+VE+I
Sbjct: 5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS 64
Query: 162 ADT 164
+
Sbjct: 65 GPS 67
Score = 73.1 bits (180), Expect = 8e-18
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS +DY A+ +DELT +G LI + + GGWW+G + FP N+V
Sbjct: 3 SGSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNYVE 61
Query: 88 VL 89
+
Sbjct: 62 DI 63
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 84.6 bits (210), Expect = 2e-22
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGV-FPSNFVEEIP 161
+ LF Y DEL + +I + + + GWWRG + + FPSN+VEE+
Sbjct: 2 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
Score = 66.9 bits (164), Expect = 2e-15
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
FDY AQ DELT K +I + Q GGWW G ++ FP N+V +
Sbjct: 10 FDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY-GGKKQLWFPSNYVEEM 59
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 84.6 bits (210), Expect = 3e-22
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRD-RTGVFPSNFVEEIPAD 163
+ R +F + P + DELEL V+D + V + E+ W+ +R GVFP+ + E+ +
Sbjct: 7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE 66
Query: 164 T 164
Sbjct: 67 P 67
Score = 69.2 bits (170), Expect = 3e-16
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
F + + DEL L D + W+E +R RG+FP + +
Sbjct: 13 FRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV 63
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 84.2 bits (209), Expect = 4e-22
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD-RTGVFPSNFVEEIP 161
+ R +F + P + DELEL V+D + V + E+ W+ +R GVFP+ + E+
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61
Score = 70.3 bits (173), Expect = 9e-17
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
F + + DEL L D + W+E +R RG+FP + + +
Sbjct: 10 FRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 62
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 83.9 bits (208), Expect = 6e-22
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 108 CRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
+ + P + L L V D++ V G W G + R G+FP V+
Sbjct: 4 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 62
Score = 70.0 bits (172), Expect = 1e-16
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAA 93
+A + A + L L GD++ R+ G WEG + R+G+FP V++
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIFDPQN 62
Query: 94 AE 95
+
Sbjct: 63 PD 64
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 83.8 bits (208), Expect = 6e-22
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
G L+ Y A DE+ +D+I + +++GWWRG + R G+FP+N+VE
Sbjct: 8 LGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
Score = 73.4 bits (181), Expect = 5e-18
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 27 HAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+ I A +DY A DE++ D+IT I + GWW G+ + R G+FP N+V
Sbjct: 4 GSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC--KGRYGLFPANYV 61
Query: 87 RVL 89
+
Sbjct: 62 ELR 64
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 83.9 bits (208), Expect = 7e-22
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIPA 162
+R L+ + P N +EL L D++ + + +GW +TG+ P FV I
Sbjct: 5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64
Query: 163 DTMTAESRH 171
+ H
Sbjct: 65 ELEHHHHHH 73
Score = 70.0 bits (172), Expect = 2e-16
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
A +D+ + +EL L +GD++ GW ++ G+ P+ FV +
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPELE 67
Query: 95 ETQ 97
Sbjct: 68 HHH 70
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 83.8 bits (208), Expect = 7e-22
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIP 161
G L +Y+ +EL+L + I VL + ++GW +G L RTG+FPS++V +
Sbjct: 6 SGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
Score = 73.4 bits (181), Expect = 7e-18
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS Y+A +EL L+KG+ I + GW +GL + R G+FP ++V
Sbjct: 3 SGSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
Query: 88 VL 89
+
Sbjct: 63 PV 64
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 83.0 bits (206), Expect = 1e-21
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ LF + P EL D I V+ + WW+G +TG+FP N+V +
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
Score = 67.2 bits (165), Expect = 1e-15
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
FD+ QE EL R+GD I + WW+G + GMFP N+V +
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTAV 57
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 83.1 bits (206), Expect = 1e-21
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ + YT + DE+ ++V+ + EGWW R + G P++++++
Sbjct: 7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKA 63
Score = 65.4 bits (160), Expect = 8e-15
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEA 92
YT+Q DE+ KG + IR GWW + G P ++++ ++
Sbjct: 13 TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRY--LGKEGWAPASYLKKAKDS 66
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 82.8 bits (205), Expect = 2e-21
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
+ + L S+T + L +D+I VL E +E WW G + G FP ++V+ IP
Sbjct: 9 ENLKAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVKIIPGS 67
Query: 164 TMTAES 169
S
Sbjct: 68 ESGPSS 73
Score = 67.7 bits (166), Expect = 1e-15
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+G ++A +TA++ + L K D+IT + Q WW G + RG FP ++V+
Sbjct: 6 SGVENLKAQALCSWTAKKDNHLNFSKHDIITVLE-QQENWWFGEV--HGGRGWFPKSYVK 62
Query: 88 VLGEAAAE 95
++ + +
Sbjct: 63 IIPGSESG 70
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 83.2 bits (206), Expect = 2e-21
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLS--EVEEGWWRGRLRDRTGVFPSNFVEE 159
R+ RVL+ Y AN+ EL L ++VI V S ++ W G ++ G P ++E
Sbjct: 14 SSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73
Query: 160 I 160
+
Sbjct: 74 L 74
Score = 68.6 bits (168), Expect = 7e-16
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSG--GWWEGLLVRENRR 78
S S+ +A V +DY A + EL+L ++IT V W G R N++
Sbjct: 6 SGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG--ERGNQK 63
Query: 79 GMFPDNFVRVL 89
G P ++ +L
Sbjct: 64 GKVPITYLELL 74
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 82.8 bits (205), Expect = 2e-21
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 104 PGRRCRVLFSYTPANA-------DELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSN 155
GRR L+ Y P + EL D+I V E++E G++ G L + G+ PSN
Sbjct: 6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSN 65
Query: 156 FVEEIPADT 164
F+EE+ +
Sbjct: 66 FLEEVSGPS 74
Score = 60.5 bits (147), Expect = 7e-13
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 28 AGSSVIEASVEFDYTAQEA-------DELTLRKGDLITGI-RVQSGGWWEGLLVRENRRG 79
+GSS +DY +E+ ELT GD+IT + G++ G L ++G
Sbjct: 3 SGSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL--NGQKG 60
Query: 80 MFPDNFVRVL 89
+ P NF+ +
Sbjct: 61 LVPSNFLEEV 70
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 82.4 bits (204), Expect = 2e-21
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLS---EVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ L+ + DEL D++ VL + +GWW L R G+ P N ++ +
Sbjct: 2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61
Query: 161 PADT 164
Sbjct: 62 VGMY 65
Score = 66.2 bits (162), Expect = 3e-15
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 39 FDYTAQEADELTLRKGDLITGIR---VQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
+D A+ DEL+ RKGD++T + GWW L R+G+ P N +++L +
Sbjct: 10 YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSL--HGRQGIVPGNRLKILVGMYDK 67
Query: 96 T 96
Sbjct: 68 K 68
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 81.9 bits (203), Expect = 3e-21
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVEEIPADT 164
V + Y + DEL + V ++I + ++ EEGW G L R G+FP NFV+EI +T
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
Score = 73.8 bits (182), Expect = 4e-18
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 32 VIEASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFVRVLG 90
+++ VE+DY A DELT+R G++I + ++Q GW EG L RRGMFPDNFV+ +
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVKEIK 58
Query: 91 EAA 93
Sbjct: 59 RET 61
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 81.9 bits (203), Expect = 3e-21
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 160
R R ++ Y+ + DE+ D I + +++GW G ++ RTG+ P+N++E +
Sbjct: 5 NLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
Score = 73.4 bits (181), Expect = 5e-18
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
A +++ +DY+AQ+ DE++ R GD I ++ GW G + R R GM P N++
Sbjct: 2 AMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
Query: 88 VL 89
+
Sbjct: 62 FV 63
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 82.1 bits (203), Expect = 4e-21
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPA 60
Score = 69.7 bits (171), Expect = 2e-16
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L A + ++
Sbjct: 9 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDPAQSASRE 66
Query: 99 AMRKKP 104
+ P
Sbjct: 67 NLGGPP 72
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 81.5 bits (202), Expect = 4e-21
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
M + VL+ Y + EL + D++ +L+ + WW+ + R G P+ ++++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
Query: 160 I 160
+
Sbjct: 61 L 61
Score = 65.7 bits (161), Expect = 4e-15
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+DY + ELT++KGD++T + + WW+ + R+G P +++ L
Sbjct: 13 YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV--NGRQGFVPAAYLKKL 61
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 81.6 bits (202), Expect = 5e-21
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 4 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPA 63
Score = 67.7 bits (166), Expect = 1e-15
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQ 97
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L A + ++
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDPAQSASR 68
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 81.6 bits (202), Expect = 5e-21
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 108 CRVLFSYTPA--NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
RV+ P + L L V +++ V G W G + G FP V +
Sbjct: 9 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ 66
Score = 68.5 bits (168), Expect = 4e-16
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
+ A + L L G+L+ ++ G WEG +RG FP VR+L +
Sbjct: 10 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLLDQ 65
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 82.1 bits (203), Expect = 5e-21
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
++ + EL DVI VL + WW G++ D G FP++FV
Sbjct: 9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ 68
Query: 164 TMTAESR 170
E
Sbjct: 69 EDEVEEG 75
Score = 70.1 bits (172), Expect = 2e-16
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+G S++ A +D+ EL + GD+I + + WW G + ++ G FP +FVR
Sbjct: 6 SGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQI--DDEEGWFPASFVR 63
Query: 88 VLGEAAAETQ 97
+ E +
Sbjct: 64 LWVNQEDEVE 73
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 81.2 bits (201), Expect = 6e-21
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
+ V+ +Y EL L +V+DV+ + E GWW + G P+ ++E +
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS 65
Score = 63.5 bits (155), Expect = 4e-14
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 28 AGSSVIE-ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+GSS +E V +Y QE EL+L+ G+++ I GWW +G P ++
Sbjct: 3 SGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFV--STSEEQGWVPATYL 60
Query: 87 RVLGEA 92
Sbjct: 61 EAQNSG 66
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 80.8 bits (200), Expect = 9e-21
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
G + Y + +L + I +L + WW G G P+N V +
Sbjct: 6 SGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSGP 65
Query: 164 T 164
+
Sbjct: 66 S 66
Score = 68.8 bits (169), Expect = 4e-16
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS E DY A + +L+ +G+ I +R + WW G G P N V
Sbjct: 3 SGSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANHVG 60
Query: 88 VL 89
Sbjct: 61 KH 62
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 81.4 bits (201), Expect = 1e-20
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSE----VEEGWWRGRLRD--RTGVFP 153
+R +V++ YTP N DELEL D I + EGW G +G+ P
Sbjct: 11 IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70
Query: 154 SNFVEEIP-ADTMTAESRHRKES 175
N++ + T S
Sbjct: 71 ENYITKADECSTWIFHGSSGPSS 93
Score = 69.4 bits (170), Expect = 4e-16
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSG----GWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
+ YT Q DEL L GD I ++ GW G + G+ P+N++ E +
Sbjct: 23 YPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECST 82
Query: 95 ET 96
Sbjct: 83 WI 84
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 82.8 bits (204), Expect = 1e-20
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
+ + + + EL L D+I +L+ + ++GWWRG + R G FPSN+VEE +
Sbjct: 4 TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS 63
Query: 163 DTMTAESRHRKESNNNEADP 182
+ + S +
Sbjct: 64 EYLPETGGGSGSSMTYKLIL 83
Score = 66.3 bits (161), Expect = 2e-14
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFV 86
+ A +D+ A++ EL+L++GD+I + + GWW G + R G FP N+V
Sbjct: 1 GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEI--YGRIGWFPSNYV 58
Query: 87 RVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELE 123
+L T E
Sbjct: 59 EEDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTE 95
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 80.9 bits (200), Expect = 1e-20
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLS--EVEEGWWRGRLRDRTGVFPSNFVEE 159
L SY N L H D+I +L +E GW G R+G+FP++ V+
Sbjct: 5 SSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQP 64
Query: 160 IPADTMTAESRHRKES 175
A + R S
Sbjct: 65 AAAPDFSFSKEQRSGS 80
Score = 63.6 bits (155), Expect = 5e-14
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQS--GGWWEGLLVRENRRGMFPDNFVRVLGEAAAET 96
Y L+ +GDLI + V + GW G R G+FP + V+
Sbjct: 15 RSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSA--GGRSGLFPADIVQPAAAPDFSF 72
Query: 97 QVAMRKKPGR 106
R G
Sbjct: 73 SKEQRSGSGP 82
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 80.5 bits (199), Expect = 2e-20
Identities = 13/63 (20%), Positives = 30/63 (47%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
+ L+ Y + E+ + D++ +L+ + WW+ + DR G P+ +V+++
Sbjct: 14 ETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLA 73
Query: 162 ADT 164
A
Sbjct: 74 AAW 76
Score = 66.3 bits (162), Expect = 6e-15
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQ 97
+DY + E+T++KGD++T + + WW+ + +R+G P +V+ L A + Q
Sbjct: 24 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLAAAWSHPQ 80
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 80.1 bits (198), Expect = 2e-20
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 91 EAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDR 148
++ + L+S+ +L D I V+S+ + WW G+LR +
Sbjct: 3 SGSSGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQ 62
Query: 149 TGVFPSNFVEEIPADT 164
TG+FP+N+V +
Sbjct: 63 TGIFPANYVTMNSGPS 78
Score = 63.9 bits (156), Expect = 4e-14
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRV--QSGGWWEGLLVRENRR 78
S + IE + + + Q+ +L + GD IT I WWEG L +
Sbjct: 6 SGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL--RGQT 63
Query: 79 GMFPDNFVRVLGE 91
G+FP N+V +
Sbjct: 64 GIFPANYVTMNSG 76
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 80.0 bits (198), Expect = 2e-20
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLS-EVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
+ + DEL D++ VL+ E ++ W++ L + G P N++E P
Sbjct: 8 GSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 67
Query: 163 DTMTAE 168
Sbjct: 68 PEFIVT 73
Score = 68.1 bits (167), Expect = 8e-16
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQ-SGGWWEGLLVRENRRGMFPDNFV 86
A +EA ++D+ A DEL+ ++GD++ + + W++ L + G P N++
Sbjct: 5 ASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYI 62
Query: 87 RVL 89
+
Sbjct: 63 EMK 65
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 79.0 bits (195), Expect = 5e-20
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 102 KKPGRRCRVLFSYTPANA-------DELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFP 153
G+ Y P + L L DV+ V + ++G++ G L G+ P
Sbjct: 4 GSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVP 63
Query: 154 SNFVEEIPAD 163
++ ++ +
Sbjct: 64 AHLLDHMSLH 73
Score = 54.3 bits (131), Expect = 1e-10
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 39 FDYTAQEA-------DELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
DY + L LR GD++ + G++ G L RG+ P + + +
Sbjct: 14 LDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL--GGHRGLVPAHLLDHM 70
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 78.8 bits (195), Expect = 6e-20
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+GSS EA +F++ E++ RKG+ IT +R W+EG + +R+G+FP +V
Sbjct: 3 SGSSGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
Query: 88 VLGE 91
V+
Sbjct: 63 VISG 66
Score = 77.7 bits (192), Expect = 2e-19
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIPA 162
G F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG 66
Query: 163 DT 164
+
Sbjct: 67 PS 68
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 78.4 bits (194), Expect = 6e-20
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRDRTGVFPSNFVEEI 160
+ L+S+ + +L DVI +L + + WW GR+ R G+FP+N+VE +
Sbjct: 3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
Score = 64.1 bits (157), Expect = 2e-14
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 39 FDYTAQEADELTLRKGDLITGI-RVQS-GGWWEGLLVRENRRGMFPDNFVRVL 89
+ + +E+ +L RKGD+IT + + S WW G + R G+FP N+V ++
Sbjct: 10 YSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV 60
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 78.9 bits (195), Expect = 6e-20
Identities = 14/60 (23%), Positives = 20/60 (33%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
F+YT A EL DV+ + WWRG G+ P ++
Sbjct: 9 GVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGT 68
Score = 72.4 bits (178), Expect = 2e-17
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+G V+EA F YT + A EL+ R+GD++ S WW G RG+ P ++
Sbjct: 6 SGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH--NGMRGLIPHKYIT 63
Query: 88 VLGEAAAET 96
+ +
Sbjct: 64 LPAGTEKQV 72
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 76.4 bits (189), Expect = 2e-19
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRDRTGVFPSNFVE 158
+++Y DE+ + D+I V+ GW G G+FP+++ +
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
Score = 65.2 bits (160), Expect = 6e-15
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFVR 87
+ Y AQ DE+++ GD+IT IR G GW G + +G+FP ++ +
Sbjct: 7 YAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC--DGLKGLFPTSYCK 54
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 77.0 bits (190), Expect = 3e-19
Identities = 11/58 (18%), Positives = 17/58 (29%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADT 164
F Y A EL + + + WW GR G+ P ++
Sbjct: 11 EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSG 68
Score = 71.6 bits (176), Expect = 4e-17
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ IEA +FDY + A EL+ +KG + + S WWEG G+ P ++
Sbjct: 5 SSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH--NGIDGLIPHQYIV 62
Query: 88 VL 89
V
Sbjct: 63 VQ 64
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 76.9 bits (190), Expect = 3e-19
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
G L+ Y+ +L + I V + + WW G + DR+G+FPSN+V+ +
Sbjct: 7 GGEEYIALYPYSSVEPGDLTFTEGEEILVT-QKDGEWWTGSIGDRSGIFPSNYVKPKDSG 65
Query: 164 T 164
Sbjct: 66 P 66
Score = 62.7 bits (153), Expect = 9e-14
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+ Y++ E +LT +G+ I + + G WW G + +R G+FP N+V+
Sbjct: 15 YPYSSVEPGDLTFTEGEEILVTQ-KDGEWWTGSI--GDRSGIFPSNYVKPK 62
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 77.4 bits (191), Expect = 3e-19
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 90 GEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRG-RLRD- 147
G + + + P + + ++ ADE+ L DV+ VL + E+GW G RLRD
Sbjct: 4 GSSGWQGLSSKGDLP--QVEITKAFFAKQADEVTLQQADVVLVL-QQEDGWLYGERLRDG 60
Query: 148 RTGVFPSNFVEEIP 161
TG FP +F I
Sbjct: 61 ETGWFPEDFARFIS 74
Score = 72.4 bits (178), Expect = 2e-17
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
+ + A++ADE+TL++ D++ ++ Q GW G +R+ G FP++F R + ++
Sbjct: 22 ITKAFFAKQADEVTLQQADVVLVLQ-QEDGWLYGERLRDGETGWFPEDFARFISGPSS 78
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 76.6 bits (189), Expect = 3e-19
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 161
L+ YT +DEL +H D+I V + E WW G + + G FP+N V
Sbjct: 6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET 63
Score = 66.6 bits (163), Expect = 3e-15
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DYTA +DELT+ +GD+I + WW G + + + G FP N V
Sbjct: 13 YDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANHV 59
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 76.8 bits (189), Expect = 5e-19
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPAD 163
+Y E+ + VL + E GWW R + G PS+++ +
Sbjct: 7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE 66
Query: 164 TMTAESRHRKESNNNEADPAKA 185
+ + + E+ P+
Sbjct: 67 --------QPDPSGKESGPSSG 80
Score = 62.1 bits (151), Expect = 2e-13
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAET 96
Y + E++ G + + Q GWW G P +++ + +
Sbjct: 15 SAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRF--GELEGWAPSHYLVLDENEQPDP 70
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 76.2 bits (188), Expect = 6e-19
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 99 AMRKKPGRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLR--DRTGVFPS 154
G++ + +F +T N L DV+ +L E ++GW G G FPS
Sbjct: 1 GSSGSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPS 60
Query: 155 NFVEEIPADT 164
++ + + +
Sbjct: 61 SYTKLLSGPS 70
Score = 65.1 bits (159), Expect = 1e-14
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 29 GSSVIEASVEFDYTAQE-ADELTLRKGDLIT-GIRVQSGGWWEGLLVRENRRGMFPDNFV 86
GSS + F +TA L+ +GD++T I + GW G RG FP ++
Sbjct: 4 GSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63
Query: 87 RVLGE 91
++L
Sbjct: 64 KLLSG 68
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 76.2 bits (188), Expect = 6e-19
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-----RTGVFPSNFVE 158
+ F Y D+L + I V S + W+ G +D G+FP +FV
Sbjct: 9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65
Score = 69.3 bits (170), Expect = 3e-16
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN---RRGMFPDNFVRVLG 90
F Y + D+L K I V+ W+ G N G+FP +FV V G
Sbjct: 14 FPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG 68
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 76.8 bits (189), Expect = 7e-19
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 92 AAAETQVAMRKKPGRRCRVLFSYTP--------ANADELELHVNDVIDVLSEVEE-GWWR 142
++ T + P R LF Y P A +EL +I V + + G++R
Sbjct: 4 GSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYR 63
Query: 143 GRLRDRTGVFPSNFVEEIPADT 164
G R G+ P N V EI AD
Sbjct: 64 GETCARLGLIPCNMVSEIQADD 85
Score = 53.0 bits (127), Expect = 7e-10
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 39 FDYTAQEA--------DELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFVRVL 89
FDY +EL ++G +I + G++ G R G+ P N V +
Sbjct: 24 FDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET--CARLGLIPCNMVSEI 81
Query: 90 GEAAAET 96
E
Sbjct: 82 QADDEEM 88
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 75.3 bits (186), Expect = 9e-19
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRL-RDRTGVFPSNFVEEI 160
G R R L+ Y DEL D + L E E+GW RGRL + G++P+N+VE I
Sbjct: 3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
Score = 64.1 bits (157), Expect = 2e-14
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 30 SSVIEASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFVRV 88
+ + +DY QE DEL+ + GD +T + GW G L + G++P N+V
Sbjct: 1 AKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS-GQLGLYPANYVEA 59
Query: 89 L 89
+
Sbjct: 60 I 60
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 75.3 bits (186), Expect = 9e-19
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A+ E+DY A E +ELT + D I I WW G L ++ +G+FP N+V +
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57
Score = 72.2 bits (178), Expect = 1e-17
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVE 158
+ Y A +EL ND I + V++ WW G L G+FPSN+V
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 75.3 bits (186), Expect = 9e-19
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAD 163
R LF + + ++L D++ + + EE WW + G+ P +VE+
Sbjct: 3 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH 62
Query: 164 T 164
Sbjct: 63 H 63
Score = 62.6 bits (153), Expect = 8e-14
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
FD+ + ++L +KGD++ WW +RGM P +V
Sbjct: 10 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEKYHH 61
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 74.9 bits (185), Expect = 1e-18
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE 158
F Y +A EL + + E WW GR G+ P ++
Sbjct: 6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
Score = 66.5 bits (163), Expect = 2e-15
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 30 SSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRV 88
S A +FDY + A EL+ +KG + S WWEG G+ P ++ V
Sbjct: 4 GSPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRH--NGIDGLVPHQYIVV 60
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 76.0 bits (187), Expect = 1e-18
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSE-----VEEGWWRGRLRD-RTGVFPSN 155
G +F Y A +EL L D + VLS+ +EGWW G+L R GVFPSN
Sbjct: 26 TPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSN 85
Query: 156 FVE 158
+V
Sbjct: 86 YVA 88
Score = 64.9 bits (158), Expect = 2e-14
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSG-----GWWEGLLVRENRRGMFPDNFV 86
FDY A +ELTLR+GD + + GWW G L R G+FP N+V
Sbjct: 36 FDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPS-GRVGVFPSNYV 87
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 75.0 bits (185), Expect = 2e-18
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
EA +F++ E++ RKG+ IT +R W+EG + +R+G+FP +V V+
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
Score = 74.6 bits (184), Expect = 2e-18
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIP 161
F++ E+ + I +L +V+E W+ GR+ R G+FP +V+ I
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 74.6 bits (184), Expect = 2e-18
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 99 AMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFV 157
+M ++ L+ Y P NA++L+L D +L E WWR R ++ + G PSN+V
Sbjct: 2 SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
Query: 158 EEI 160
E
Sbjct: 62 TEA 64
Score = 59.2 bits (144), Expect = 2e-12
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A++L LRKGD + + WW + + G P N+V
Sbjct: 15 YDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYV 61
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 75.9 bits (186), Expect = 3e-18
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 92 AAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLS-----EVEEGWWRG--- 143
+ ++ + + + YT + DEL+L DV+ V+ E +EGW G
Sbjct: 31 STTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKE 90
Query: 144 -------RLRDRTGVFPSNFVEEI 160
L GVFP NF E +
Sbjct: 91 SDWNQHKELEKCRGVFPENFTERV 114
Score = 63.9 bits (155), Expect = 8e-14
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSG-----GWWEGLLVRE--------NRRGMFPDNF 85
DYTA + DEL L+ GD++ I Q+ GW G+ + RG+FP+NF
Sbjct: 51 HDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENF 110
Query: 86 VRVL 89
+
Sbjct: 111 TERV 114
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 73.7 bits (181), Expect = 4e-18
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEI 160
V F+Y DEL L + V+ +GWWRG + G FPSN+V E
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE 56
Score = 68.7 bits (168), Expect = 3e-16
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
I A V F Y A+ DEL+L G +T + S GWW G + G FP N+V +
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSY--NGQIGWFPSNYVLEEVD 58
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 78.9 bits (193), Expect = 1e-17
Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 32/173 (18%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
SP + + A FD+T EL + GD+I + + W EG + G+
Sbjct: 163 SPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGI 220
Query: 81 FPDNFVRVLGEAAAETQVAMRKK---------PGRRCRV--LFSYTPANADELELHVN-- 127
FP +FV++L + E + + V S TP D LEL
Sbjct: 221 FPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREF 280
Query: 128 --------------DVIDVLSEVEEGWWRGRLR---DRTGVFPSNFVEEIPAD 163
D++ +LS+ + + R + +FP +
Sbjct: 281 QREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDN 333
Score = 76.6 bits (187), Expect = 6e-17
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEE 159
+ + R LF +T + EL DVI +LS + + W G +R TG+FP +FV+
Sbjct: 169 VDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228
Query: 160 IPADTMTAESRHRKESNNNE 179
+ + + E
Sbjct: 229 LKDFPEEDDPTNWLRCYYYE 248
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 73.6 bits (181), Expect = 1e-17
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 92 AAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRT 149
++ + +++ EL + I ++ +V E W+ GR+ R
Sbjct: 4 GSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQ 63
Query: 150 GVFPSNFVEEIPADTMTAESRH 171
G+FP+++V+ +
Sbjct: 64 GIFPASYVQVSREPRLRLCDDS 85
Score = 72.5 bits (178), Expect = 2e-17
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
S + EA ++ + EL+ RKG+ I IR + W+EG + R+G+
Sbjct: 6 SGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGI 65
Query: 81 FPDNFVRVLGE 91
FP ++V+V E
Sbjct: 66 FPASYVQVSRE 76
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 72.8 bits (179), Expect = 1e-17
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 99 AMRKKPGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTGV 151
R L+ + P N + E+ L D++ +LS + WW+ R ++ G
Sbjct: 1 GSHHHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGY 60
Query: 152 FPSNFVEEI 160
P N++E I
Sbjct: 61 IPYNYIEII 69
Score = 52.4 bits (126), Expect = 6e-10
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 39 FDYTAQEAD-ELTLRKGDLITGIR-----VQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+D+ + + E+ L+KGDL+ + + WW+ + G P N++ ++
Sbjct: 14 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIEII 69
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 72.9 bits (179), Expect = 1e-17
Identities = 11/65 (16%), Positives = 29/65 (44%)
Query: 118 NADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADTMTAESRHRKESNN 177
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T +
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQE 63
Query: 178 NEADP 182
+ +
Sbjct: 64 SGDNA 68
Score = 59.9 bits (145), Expect = 1e-12
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 43 AQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
A E+T++KGD++T + + WW+ + +R+G P +V+ L + V
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDSGTGKELV 55
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 72.3 bits (178), Expect = 2e-17
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIP 161
G+ ++L+ +T NA+EL + ++V++VL + + W + G P N + E
Sbjct: 7 GKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEAS 63
Score = 55.3 bits (134), Expect = 5e-11
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+GSS + +D+TA+ A+EL++ K +++ + W R + G P N +
Sbjct: 3 SGSSGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNIL 59
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 72.3 bits (178), Expect = 2e-17
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
L+ Y D+L H + +L+ E WW R TG PSN+V +
Sbjct: 14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Score = 66.9 bits (164), Expect = 2e-15
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A D+L+ KG+ + G WWE + G P N+V
Sbjct: 22 YDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 75.9 bits (186), Expect = 2e-17
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 9/147 (6%)
Query: 19 ELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQS---GGW--WEGLLV 73
E S+ H G+ +I S +A L+++ G+ + +V G + W
Sbjct: 71 EEMLSKQRHDGAFLIRES----ESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFN 126
Query: 74 RENRRGMFPDNFVRVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVL 133
N + + + + + + LF + P EL D I V+
Sbjct: 127 SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVM 186
Query: 134 SEVEEGWWRGRLRDRTGVFPSNFVEEI 160
+ WW+G +TG+FP N+V +
Sbjct: 187 DNSDPNWWKGACHGQTGMFPRNYVTPV 213
Score = 60.5 bits (146), Expect = 1e-11
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEE-GWWRGRLRDRTGVFPSNFVEEIPADTM 165
+ + DEL D++ VL+E + W++ L + G P N++E P
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWF 61
Query: 166 TAE-SRHRKES 175
+ R + E
Sbjct: 62 FGKIPRAKAEE 72
Score = 56.2 bits (135), Expect = 4e-10
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 18 KELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENR 77
+++ FD+ QE EL R+GD I + WW+G +
Sbjct: 144 QQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQ 201
Query: 78 RGMFPDNFV 86
GMFP N+V
Sbjct: 202 TGMFPRNYV 210
Score = 54.3 bits (130), Expect = 2e-09
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIR-VQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
+EA ++D+ A DEL+ ++GD++ + W++ L + G P N++ +
Sbjct: 1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEMKPH 58
Query: 92 ---------AAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVI 130
A AE ++ ++ G + S + L + + +
Sbjct: 59 PWFFGKIPRAKAEEMLSKQRHDG-AFLIRESESAPGDFSLSVKFGNDV 105
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 72.6 bits (178), Expect = 2e-17
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 103 KPGRRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGWWRGRLRD------RTGVFPSN 155
+ + R L + + L + DVI VL + +G W+G + + R G FP
Sbjct: 16 RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPG 75
Query: 156 FVEEI 160
VE +
Sbjct: 76 IVEVV 80
Score = 64.1 bits (156), Expect = 3e-14
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 39 FDYT-AQEADELTLRKGDLITGIRVQSGGWWEGLLV----RENRRGMFPDNFVRVLGE 91
D+ + L +R GD+IT + G W+G + +R G FP V V+ +
Sbjct: 25 KDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVSK 82
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 71.6 bits (176), Expect = 3e-17
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 104 PGRRCRVLFSYT-PANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 160
GRR R + YT + DE+ D+ V +E+E+GW G+ + VEE+
Sbjct: 6 SGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
Score = 66.2 bits (162), Expect = 4e-15
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 28 AGSSVIEASVEFDYTA-QEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+GSS YT + DE++ KGD+ GW +R + +G+ ++ V
Sbjct: 3 SGSSGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 62
Query: 87 RVLGEAAA 94
+ ++
Sbjct: 63 EEVSGPSS 70
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 71.0 bits (175), Expect = 3e-17
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
R LF + + ++L D++ + + EE WW + + G+ P +VE+
Sbjct: 1 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 62.5 bits (153), Expect = 7e-14
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
FD+ + ++L +KGD++ WW +RGM P +V
Sbjct: 8 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYV 54
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 72.2 bits (177), Expect = 4e-17
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 104 PGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTGVFPSNF 156
R L+ + P N + E+ L D++ +LS + WW+ R ++ G P N+
Sbjct: 13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNY 72
Query: 157 VEEIPADTMTAES 169
+E I
Sbjct: 73 IEIIKRRKKIEHV 85
Score = 52.1 bits (125), Expect = 2e-09
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 39 FDYTAQEAD-ELTLRKGDLIT-----GIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEA 92
+D+ + + E+ L+KGDL+ + WW+ + G P N++ ++
Sbjct: 21 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIEIIKRR 79
Query: 93 AAETQV 98
V
Sbjct: 80 KKIEHV 85
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 71.1 bits (175), Expect = 5e-17
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEI 160
G + +T +L +++ V+ + +GWW + G+ P ++E
Sbjct: 9 TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPY 66
Score = 60.0 bits (146), Expect = 8e-13
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 26 NHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNF 85
+H S+ E D+TAQ+ +LT +KG+++ I + GWW + G+ P +
Sbjct: 4 SHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAK-GNEGLVPRTY 62
Query: 86 VRVLGE 91
+ E
Sbjct: 63 LEPYSE 68
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 70.8 bits (174), Expect = 6e-17
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 105 GRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLRD--RTGVFPSNFVEEI 160
++ + +F +T N L DVI +L E ++GW G G FPS++ + +
Sbjct: 6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL 65
Query: 161 P 161
Sbjct: 66 E 66
Score = 63.9 bits (156), Expect = 3e-14
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 39 FDYTAQEA-DELTLRKGDLITGIRVQ-SGGWWEGLLVRENRRGMFPDNFVRVLGE 91
F +TA L+ +GD+IT + + GW G RG FP ++ ++L E
Sbjct: 13 FPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEE 67
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 70.8 bits (174), Expect = 8e-17
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 102 KKPGRRCRVLFSYTP-ANADELELHVNDVIDVLSE-VEEGWWRGRLRD-RTGVFPSNFVE 158
+ RV++ + +EL + ++I V + V GW G+ G+ P+++VE
Sbjct: 6 SGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVE 65
Query: 159 EIPADT 164
+P D
Sbjct: 66 ILPNDG 71
Score = 57.0 bits (138), Expect = 2e-11
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 28 AGSSVIEASVEFDYTAQEAD-ELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNF 85
+ +A V +D+ A+ + ELT+ +G++IT G GW EG + +G+ P ++
Sbjct: 5 SSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLVPTDY 63
Query: 86 VRVLGEAAAE 95
V +L +
Sbjct: 64 VEILPNDGKD 73
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 70.4 bits (173), Expect = 1e-16
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPA 162
G + +VL+ + N EL + + ++VL + W R+G PSN +E +
Sbjct: 7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSG 64
Score = 56.9 bits (138), Expect = 1e-11
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRE--NRRGMFPDNF 85
+GSS ++ V +++ A+ ELT+ +G+ + + S WW V+ R G P N
Sbjct: 3 SGSSGLKMQVLYEFEARNPRELTVVQGEKLEVLD-HSKRWWL---VKNEAGRSGYIPSNI 58
Query: 86 VRVL 89
+ L
Sbjct: 59 LEPL 62
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 70.0 bits (172), Expect = 1e-16
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 105 GRRCRVLFSYTPA-NADELELHVNDVIDVL-SEVEEGWWRGRLR--DRTGVFPSNFVEEI 160
R + +FS+ N+ L D+I +L E +GW G G FP ++ +
Sbjct: 7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
Score = 63.9 bits (156), Expect = 2e-14
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 39 FDYTAQEA-DELTLRKGDLITGIRVQ-SGGWWEGLLVRENRRGMFPDNFVRVL 89
F + A + L+ ++GDLIT + + GW G + RG FP ++ RVL
Sbjct: 14 FSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 70.1 bits (172), Expect = 1e-16
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADTMTAE 168
L Y A E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 4 PPLPPY-SAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62
Query: 169 SR 170
Sbjct: 63 VL 64
Score = 55.9 bits (135), Expect = 3e-11
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEA 92
+ A Y+A E+T++KGD++T + + WW+ + +R+G P +V+ L
Sbjct: 1 MGAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDSG 57
Query: 93 AAETQV 98
+ V
Sbjct: 58 TGKELV 63
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 70.1 bits (172), Expect = 1e-16
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLS----EVEEGWWRGRLRDRTGVFPSNFVE 158
+ + ++++ N +EL + N + +L WW + + G PSN++
Sbjct: 11 EGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIR 70
Query: 159 EIPAD 163
+ +
Sbjct: 71 KTESG 75
Score = 55.5 bits (134), Expect = 5e-11
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQ----SGGWWEGLLVRENRRGMFPDNFVR 87
+ + A+ +EL++ + + + + WW ++G P N++R
Sbjct: 20 YTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLA--EVNGKKGYVPSNYIR 70
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 69.7 bits (171), Expect = 1e-16
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 120 DELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADTMT 166
E+ + D++ +L+ + WW+ + DR G P+ +V+++ + T
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50
Score = 53.5 bits (129), Expect = 2e-10
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 47 DELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
E+T++KGD++T + + WW+ + +R+G P +V+ L + V
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDSGTGKELV 53
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 70.7 bits (173), Expect = 2e-16
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 92 AAAETQVAMRKKPGRRCRVLFSYTPANA------DELELHVNDVIDVLSEVEE-GWWRGR 144
++ T C +SY P + EL L + V +++E G++ G
Sbjct: 4 GSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGE 63
Query: 145 LRD-RTGVFPSNFVEEIPADT 164
L D + G+ PSNFV+ + +
Sbjct: 64 LLDGQRGLVPSNFVDFVQDNE 84
Score = 54.1 bits (130), Expect = 3e-10
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 39 FDYTAQEA------DELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFVRVLGE 91
+ Y + EL L G + + G++EG L+ +RG+ P NFV + +
Sbjct: 24 YSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLD-GQRGLVPSNFVDFVQD 82
Query: 92 AAAETQ 97
+
Sbjct: 83 NESRLA 88
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 70.1 bits (172), Expect = 2e-16
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 90 GEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-R 148
G + + + + + L+ Y + EL L N+ +L E WWR + R+
Sbjct: 4 GSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGH 63
Query: 149 TGVFPSNFVEEIPADTMTAE 168
G PS+++ E + +
Sbjct: 64 EGYVPSSYLVEKSPNNLETY 83
Score = 55.8 bits (135), Expect = 5e-11
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQ 97
+DY + EL LR+ + + WW R G P +++ ET
Sbjct: 26 YDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD-RNGHEGYVPSSYLVEKSPNNLETY 83
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 70.1 bits (172), Expect = 2e-16
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
+ L+ Y D+L H + +L+ E WW R TG PS ++
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLA-- 60
Query: 161 PADTMTAESRHRKES 175
P D + + K
Sbjct: 61 PVDRLDYKDDDDKHH 75
Score = 68.1 bits (167), Expect = 8e-16
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
+DY A+ D+L+ KG+ + G WWE + G P ++ + +
Sbjct: 12 YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYK 68
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 69.7 bits (171), Expect = 2e-16
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 104 PGRRCRVLFSYTPANAD-ELELHVNDVIDVLS-----EVEEGWWRGRLRD-RTGVFPSNF 156
R L+ + P N + E+ L D++ +LS + WW+ R ++ G P N+
Sbjct: 13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNY 72
Query: 157 VEEIP 161
+E I
Sbjct: 73 IEIIK 77
Score = 51.3 bits (123), Expect = 2e-09
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 39 FDYTAQEAD-ELTLRKGDLITGIR-----VQSGGWWEGLLVRENRRGMFPDNFVRVL 89
+D+ + + E+ L+KGDL+ + + WW+ + G P N++ ++
Sbjct: 21 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIEII 76
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 69.7 bits (171), Expect = 3e-16
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFV 157
MR L+ Y +L H + +L WW R TG PSN+V
Sbjct: 1 MRGSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
Query: 158 EEIPADTMTAESRHRKESNNNE 179
P D++ E + E + +
Sbjct: 61 A--PVDSIQGEQKLISEEDLHH 80
Score = 69.3 bits (170), Expect = 4e-16
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQV 98
+DY A +L+ KG+ + G WWE + G P N+V + E ++
Sbjct: 13 YDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGEQKL 72
Query: 99 AMRK 102
+
Sbjct: 73 ISEE 76
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 68.0 bits (167), Expect = 6e-16
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 107 RCRVLFSYTP-ANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEE 159
+ + + EL L DVI + E GW G+L D + G P+ +++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
Score = 65.3 bits (160), Expect = 6e-15
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 39 FDYTAQ-EADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+D+ EL L+KGD+I R + GW G L+ ++ G P +++
Sbjct: 7 YDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 68.4 bits (168), Expect = 6e-16
Identities = 11/66 (16%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 96 TQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE-GWWRGRLRD-RTGVFP 153
+ + G C +++ +L DV+ +++ ++ W++ + + R G+ P
Sbjct: 2 SAIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIP 61
Query: 154 SNFVEE 159
+N+V++
Sbjct: 62 ANYVQK 67
Score = 56.5 bits (137), Expect = 2e-11
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFV 86
+ S E ++++ +L KGD++T + + W++ + R G+ P N+V
Sbjct: 7 SWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYV 65
Query: 87 R 87
+
Sbjct: 66 Q 66
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 68.1 bits (167), Expect = 6e-16
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQ-SGGWWEGLLVRENRRGMFPDNFV 86
A S V++D+ A+ DELT++ GD + + + S WW LV + G+ P F+
Sbjct: 2 ASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61
Query: 87 RVLGEAAAE 95
+ +
Sbjct: 62 EPVRDKKHT 70
Score = 67.3 bits (165), Expect = 2e-15
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD--RTGVFPSNF 156
M K +R V + + + DEL + D + +L + + WW +L D ++G+ P+ F
Sbjct: 1 MASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQF 60
Query: 157 VEEI 160
+E +
Sbjct: 61 IEPV 64
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 69.4 bits (170), Expect = 7e-16
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVE 158
VL+ + ADEL +V + + + + W+ + R G+ P FV
Sbjct: 2 PLGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS 61
Query: 159 EIPADTMTAESRHRKESNNNEADP 182
I T A E + P
Sbjct: 62 IIDIATGYATGNDVIEDIKSVNLP 85
Score = 65.6 bits (160), Expect = 2e-14
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV-RENRRGMFPDNFV 86
+ A V +D+ A++ADELT G+ + + W+ + R G+ P FV
Sbjct: 1 GPLGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60
Query: 87 RVL 89
++
Sbjct: 61 SII 63
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 68.2 bits (167), Expect = 7e-16
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD---------RTGVFPS 154
G+ LF Y A++L D + VL EGWW R + G PS
Sbjct: 6 SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
Query: 155 NFVEEIP 161
N+V E
Sbjct: 66 NYVAEDS 72
Score = 60.9 bits (148), Expect = 5e-13
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN-------RRGM 80
+GSS FDY A+ A++L+ R GD + + GWW + + +G
Sbjct: 3 SGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGY 62
Query: 81 FPDNFV 86
P N+V
Sbjct: 63 IPSNYV 68
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 70.2 bits (171), Expect = 2e-15
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 11/154 (7%)
Query: 15 EQAKELSPSRCNHAGSSVIEASV---EFDYTAQEADELTLRKGDLITGIRVQSGGWWEGL 71
E+A +L G+ ++ S E+ T +EADE LI + G
Sbjct: 22 EEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAG 81
Query: 72 LVRENRRGMFPD-----NFVRVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHV 126
+ N+ FPD N ++ A A +K F +T +L
Sbjct: 82 VKIANQ--SFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQ 139
Query: 127 NDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
+ +++LS+ + WW R TG+ P+N+V+
Sbjct: 140 GERLEILSKTNQDWWEARNALGTTGLVPANYVQI 173
Score = 57.9 bits (139), Expect = 6e-11
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 11 EGDFEQAKELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEG 70
+ + + + F +T + +L +G+ + + + WWE
Sbjct: 97 NHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEA 156
Query: 71 LLVRENRRGMFPDNFVRV 88
G+ P N+V++
Sbjct: 157 -RNALGTTGLVPANYVQI 173
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 66.9 bits (164), Expect = 2e-15
Identities = 9/68 (13%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 99 AMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD-RTGVFPSNF 156
G C ++ + ++ + + + + ++ E +GW R R ++ G P+++
Sbjct: 1 GSSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSY 60
Query: 157 VEEIPADT 164
+ +
Sbjct: 61 LRVTSGPS 68
Score = 56.5 bits (137), Expect = 2e-11
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFV 86
+GSS + + +++ +G+ ++ + G GW G P +++
Sbjct: 3 SGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKE-GGEGYVPTSYL 61
Query: 87 RVLGEAAA 94
RV ++
Sbjct: 62 RVTSGPSS 69
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 67.0 bits (164), Expect = 2e-15
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLRD-RTGVFPSNFVEE 159
+ C+V++SY + DEL + ++V++V+ + + E W + R + + G P +++
Sbjct: 10 RNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQF 69
Query: 160 IPA 162
+
Sbjct: 70 PTS 72
Score = 56.2 bits (136), Expect = 3e-11
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRG 79
S + + V + Y A + DELT+ + +++ I W + + G
Sbjct: 2 SSGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV-GQVG 60
Query: 80 MFPDNFVRVLGEAAAET 96
P+ +++ + +
Sbjct: 61 YVPEKYLQFPTSSGPSS 77
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 68.0 bits (166), Expect = 3e-15
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRT---GVFPSNFVEEIPADTM 165
L+ + DEL++ + + + + + W+ + +R G+ P ++V I +
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII---DL 63
Query: 166 TAESRHRKESNNNEADPAKALRRSGRGMVE 195
+++ + K + VE
Sbjct: 64 MDPAKYASVDTYDREQVMKIIDEFKIPTVE 93
Score = 63.4 bits (154), Expect = 1e-13
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 31 SVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV-RENRRGMFPDNFVRVL 89
+ + A +++ A+ DEL + G+ ++ W+ + R G+ P ++VR++
Sbjct: 2 APLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61
Query: 90 GEAAAETQ 97
Sbjct: 62 DLMDPAKY 69
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 66.2 bits (162), Expect = 4e-15
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 102 KKPGRRCRVLFSYTP-ANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVE 158
K P + + + ++ EL L D++ + + GW +L D + G P+ ++
Sbjct: 1 KDP--KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT 58
Query: 159 EIPADTMTA 167
T
Sbjct: 59 PYKDTRNTV 67
Score = 62.7 bits (153), Expect = 8e-14
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 39 FDYTAQ-EADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAA 93
+D+ + EL L+KGD++ R + GW L+ ++ G P ++ +
Sbjct: 9 YDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTR 64
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 66.6 bits (163), Expect = 4e-15
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 94 AETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVF 152
+ + + ++ L+ Y + EL L ++ +L E WWR + ++ G
Sbjct: 9 EDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYA 68
Query: 153 PSNFVEE 159
PS+++ E
Sbjct: 69 PSSYLVE 75
Score = 55.5 bits (134), Expect = 6e-11
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
+R + +DY + EL LR + + WW + G
Sbjct: 9 EDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD-KNGHEGY 67
Query: 81 FPDNFV 86
P +++
Sbjct: 68 APSSYL 73
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 65.4 bits (160), Expect = 6e-15
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 161
+ + + N+ EL + DV++VL + WW+ R + G P N + P
Sbjct: 6 GALKWVLCNYDFQARNSSELSVKQRDVLEVL-DDSRKWWKVRDPAGQEGYVPYNILTPYP 64
Query: 162 A 162
A
Sbjct: 65 A 65
Score = 52.7 bits (127), Expect = 5e-10
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+D+ A+ + EL++++ D++ + S WW+ + G P N +
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLD-DSRKWWKVRDPA-GQEGYVPYNIL 60
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 65.4 bits (160), Expect = 7e-15
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 107 RCRVLFSYTPANAD--ELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPAD 163
+ + L+ Y + D E+ N+++ V ++E WW+ R TG+ PSN+V+ I
Sbjct: 7 KAKALYPYDADDDDAYEISFEQNEILQVS-DIEGRWWKARRANGETGIIPSNYVQLIDGP 65
Query: 164 T 164
Sbjct: 66 E 66
Score = 55.8 bits (135), Expect = 3e-11
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 30 SSVIEASVEFDYTAQEAD--ELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ + +A + Y A + D E++ + +++ + G WW+ G+ P N+V+
Sbjct: 3 NFIYKAKALYPYDADDDDAYEISFEQNEILQ-VSDIEGRWWKARRAN-GETGIIPSNYVQ 60
Query: 88 VLGEAAAETQ 97
++ +
Sbjct: 61 LIDGPEEMHR 70
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 64.9 bits (159), Expect = 8e-15
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 34 EASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
V++D+ A+ DELT++ GD + + +S WW LV + G+ P F+ +
Sbjct: 4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
Score = 64.9 bits (159), Expect = 1e-14
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSE-VEEGWWRGRLRD--RTGVFPSNFVEEI 160
R V + + + DEL + D + +L + + WW +L D ++G+ P+ F+E +
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 66.6 bits (162), Expect = 8e-15
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 103 KPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL---RDRTGVFPSNFVE 158
R ++++ + A +L L + DV+ + E W+RG L + G+FP +F+
Sbjct: 57 DKERHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRGYLIKHKMLQGIFPKSFIH 114
Score = 60.9 bits (147), Expect = 1e-12
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 21 SPSRCNHAGSSVIE---ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN- 76
S +GSS + +++ A +L+L+ GD++ I+ G W+ G L++
Sbjct: 45 SSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVR-IQETCGDWYRGYLIKHKM 103
Query: 77 RRGMFPDNFVRV 88
+G+FP +F+ +
Sbjct: 104 LQGIFPKSFIHI 115
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 64.7 bits (158), Expect = 1e-14
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 106 RRCRVLFSYTPA-NADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEI 160
RR R + YT + DE+ D+ V +E+E+GW D G+ + VEE+
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
Score = 62.4 bits (152), Expect = 9e-14
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 39 FDYTA-QEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLG 90
YT + DE++ KGD+ GW +R + +G+ ++ V +G
Sbjct: 12 LPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG 64
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 64.6 bits (158), Expect = 1e-14
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 161
++ + A +L L +L + + WWR R + G PSN+V
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
Score = 57.3 bits (139), Expect = 8e-12
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAE 95
+D+ A EA +L L +G + WW + G P N+V +
Sbjct: 9 YDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKKSNNLD 64
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 65.2 bits (159), Expect = 2e-14
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 102 KKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRD-RTGVFPSNFVE 158
+ + L+ ++ +EL + ++V+ + E WW+ + + G+ P N+V
Sbjct: 14 SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 73
Query: 159 EIP 161
+
Sbjct: 74 VLS 76
Score = 55.6 bits (134), Expect = 8e-11
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 21 SPSRCNHAGSSVIE-ASVEFDYTAQEADELTLRKGDLITGIRVQS--GGWWEGLLVRENR 77
S N GS V+ + +++ +EL KG+ + I WW+ R +
Sbjct: 5 SSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQ 63
Query: 78 RGMFPDNFVRVLGEAAAE 95
G+ P N+V VL + A
Sbjct: 64 VGLVPKNYVVVLSDGPAL 81
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 64.7 bits (158), Expect = 2e-14
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGRLRD--RTGVFPSNFVEEI 160
PG +C +T EL DV+ +L E + W+R + + G+ + + E
Sbjct: 16 PGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER 75
Query: 161 PA 162
Sbjct: 76 SG 77
Score = 59.7 bits (145), Expect = 2e-12
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 22 PSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGI-RVQSGGWWEGLLVRENRRGM 80
P+R G+ I + ++T + EL RKGD++T + ++ W+ + G+
Sbjct: 10 PTRRWAPGTQCI---TKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGL 66
Query: 81 FPDNFVR 87
+R
Sbjct: 67 LAAGALR 73
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 64.3 bits (157), Expect = 2e-14
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL-----RDRTGVFPSNFVE 158
G + L+ + +EL DV V + E+ WW L G P N++
Sbjct: 9 LGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68
Query: 159 E 159
E
Sbjct: 69 E 69
Score = 61.6 bits (150), Expect = 2e-13
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR---ENRRGMFPDNFV 86
+D+ ++ +EL+ R GD+ R + WW LL +G P N++
Sbjct: 17 WDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYL 67
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 63.7 bits (156), Expect = 2e-14
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVE-EGWWRGR--LRDRTGVFPSNFVE 158
G +VL++Y + DE+ + D I +++ GW + TG+ P+ ++
Sbjct: 1 GMENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
Score = 57.6 bits (140), Expect = 5e-12
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 33 IEASVEFDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENRRGMFPDNFVRV 88
+E V + Y ++ DE+T+ GD I+ + +G GW + G+ P ++R+
Sbjct: 2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 63.8 bits (156), Expect = 3e-14
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEE--GWWRGRLRD-RTGVFPSNFVEEIP 161
+ L+ ++ +EL + ++V+ + E WW+ + + G+ P N+V +
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65
Score = 56.9 bits (138), Expect = 1e-11
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGIRV--QSGGWWEGLLVRENRRGMFPDNFVRVLGEAAA 94
+ +++ +EL KG+ + I WW+ R + G+ P N+V VL + A
Sbjct: 13 YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVVVLSDGPA 69
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 64.4 bits (157), Expect = 4e-14
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 91 EAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEE----GWWRGRLR 146
++ T A + R + + + +E+ D++++ + ++ GW L
Sbjct: 3 SGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD 62
Query: 147 DR-TGVFPSNFVEEIP 161
+ TG+ P+N+V+ +
Sbjct: 63 GQTTGLIPANYVKILG 78
Score = 60.6 bits (147), Expect = 9e-13
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQ----SGGWWEGLLVREN 76
S + + A E+D+ A +E++ R GD++ + GW L
Sbjct: 6 SGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL-DGQ 64
Query: 77 RRGMFPDNFVRVLGEAAAETQV 98
G+ P N+V++LG+ +
Sbjct: 65 TTGLIPANYVKILGKRRGRKTI 86
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 62.7 bits (153), Expect = 7e-14
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEI 160
G L+ Y + D+L + + VL E WW+ + L + G PSN+V ++
Sbjct: 6 QGDIVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVAKL 63
Score = 62.7 bits (153), Expect = 8e-14
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+ Y D+L+ +KG+ + + + G WW+ + + G P N+V
Sbjct: 14 YPYDGIHPDDLSFKKGEKMKVLE-EHGEWWKAKSLLTKKEGFIPSNYV 60
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 62.4 bits (152), Expect = 9e-14
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--------DRTGVFPSNFVEEI 160
L+ Y + E+ + D++ +L+ + WW+ ++ +R G P+ +V+++
Sbjct: 5 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
Score = 58.9 bits (143), Expect = 2e-12
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR------ENRRGMFPDNFVRVL 89
+DY + E+T++KGD++T + + WW+ + R+G P +V+ L
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 66.3 bits (160), Expect = 9e-14
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 91 EAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLS-----EVEEGWWRG-- 143
+ ++ + + + YT + DEL+L DV+ V+ E +EGW G
Sbjct: 128 GGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVK 187
Query: 144 --------RLRDRTGVFPSNFVEEIP 161
+L GVFP NF E +P
Sbjct: 188 ESDWNQHKKLEKCRGVFPENFTERVP 213
Score = 55.5 bits (132), Expect = 8e-10
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRV-----QSGGWWEGLLVR- 74
R + + + + DYTA + DEL L+ GD++ I Q GW G+
Sbjct: 131 GAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESD 190
Query: 75 -------ENRRGMFPDNFVRVL 89
E RG+FP+NF +
Sbjct: 191 WNQHKKLEKCRGVFPENFTERV 212
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 63.1 bits (153), Expect = 1e-13
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 17/80 (21%)
Query: 99 AMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEV---------------EEGWWRG 143
+M G + R L+ + ++LEL DV+ V GW G
Sbjct: 5 SMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPG 64
Query: 144 RLR--DRTGVFPSNFVEEIP 161
+ G FP +VE +
Sbjct: 65 LNERTRQRGDFPGTYVEFLG 84
Score = 61.9 bits (150), Expect = 2e-13
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 27 HAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRV---------------QSGGWWEGL 71
AG + + + + ++L L GD++ R QS GW GL
Sbjct: 6 MAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGL 65
Query: 72 LVRENRRGMFPDNFVRVLG 90
R +RG FP +V LG
Sbjct: 66 NERTRQRGDFPGTYVEFLG 84
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 62.2 bits (152), Expect = 1e-13
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEG-WWRGRLRDRTGVFPSNFVEEI 160
L+ + + + L + + + VL G W + ++ G PS ++ +
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61
Score = 53.7 bits (130), Expect = 1e-10
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRENRRGMFPDNFV 86
+D+ A + L++ KG+ + + G W E +N +G P ++
Sbjct: 12 YDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYI 58
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 62.8 bits (153), Expect = 1e-13
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+DY A ++L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 32 YDYEAIHHEDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYVA 79
Score = 62.5 bits (152), Expect = 2e-13
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 160
L+ Y + ++L D + VL E WW+ R + G PSN+V +
Sbjct: 24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV 81
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 63.3 bits (154), Expect = 1e-13
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEEIP 161
L+ Y ++L + +++ E WW R ++G PSN+V P
Sbjct: 26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVV--P 83
Query: 162 ADTMTAE-------SRHRKES 175
AD++ AE R ES
Sbjct: 84 ADSIQAEEWYFGKMGRKDAES 104
Score = 61.7 bits (150), Expect = 6e-13
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY A+ ++L+ +KG+ I G WWE + + G P N+V
Sbjct: 34 YDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 61.5 bits (150), Expect = 2e-13
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEEIP 161
+ + + + N+ EL + +DV+++L + WW+ R +G P+N ++ +
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMR 57
Score = 49.9 bits (120), Expect = 4e-09
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 35 ASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
A ++D+ A+ + EL++ K D++ I WW+ G P+N + ++
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLE-ILDDRRQWWKVRNAS-GDSGFVPNNILDIM 56
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 66.3 bits (160), Expect = 3e-13
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 106 RRCRVLFSYTPANADELELHVNDVIDVLSEV-EEGWWRGRLRD-RTGVFPSNFVEEI 160
R R L+ Y DEL D + + + E+GW +GRL + + G++P+N+VE I
Sbjct: 429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
Score = 59.0 bits (141), Expect = 1e-10
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 19 ELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSG-GWWEGLLVRENR 77
+ +P + + + +DY QE DEL+ + GD +T + + GW +G L +
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNG-Q 473
Query: 78 RGMFPDNFVRVL 89
G++P N+V +
Sbjct: 474 VGLYPANYVEAI 485
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 60.0 bits (146), Expect = 7e-13
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNFVEE 159
L SY P++ +L + + +L + WW+ + + G P NFV +
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK 61
Score = 59.2 bits (144), Expect = 1e-12
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
Y +L KG+ + + QSG WW+ + + G P NFV
Sbjct: 13 HSYEPSHDGDLGFEKGEQLRILE-QSGEWWKAQSLTTGQEGFIPFNFV 59
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 60.6 bits (147), Expect = 8e-13
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEE 159
+ YT EL++ N+ + +L + + WWR R +RTG PSN+VE
Sbjct: 30 EEVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNYVER 85
Score = 51.4 bits (123), Expect = 3e-09
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 21 SPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGM 80
N + + ++DYTAQ+ EL ++K + + + S WW NR G
Sbjct: 20 GSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLW-LLDDSKTWWRVRNAA-NRTGY 77
Query: 81 FPDNFVR 87
P N+V
Sbjct: 78 VPSNYVE 84
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 59.7 bits (145), Expect = 9e-13
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 76 NRRGMFPDNFVRVLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSE 135
+R+G P +V+ L + V L+ Y + E+ + D++ +L+
Sbjct: 2 DRQGFVPAAYVKKLDSGTGKELV----------LALYDYQEKSPREVTMKKGDILTLLNS 51
Query: 136 VEEGWWRGRL 145
+ WW+ +
Sbjct: 52 TNKDWWKVEV 61
Score = 49.7 bits (119), Expect = 6e-09
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEG 70
+DY + E+T++KGD++T + + WW+
Sbjct: 28 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 59.6 bits (145), Expect = 1e-12
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 105 GRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD-RTGVFPSNFVEE 159
+ YT EL++ N+ + +L + + WWR R RTG PSN+VE
Sbjct: 4 EVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNYVER 58
Score = 51.5 bits (124), Expect = 1e-09
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DYTAQ+ EL ++K + + + S WW NR G P N+V
Sbjct: 11 WDYTAQQDQELDIKKNERLW-LLDDSKTWWRVRNAA-NRTGYVPSNYV 56
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 63.1 bits (153), Expect = 4e-12
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADTMT 166
L+ + + EL DVI+V+ WW GR+ D G FP++FV
Sbjct: 32 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEP 91
Query: 167 AESRHRKESNNNEADPAK 184
A+ N+ D
Sbjct: 92 ADDDAPLAGNSGAEDGGA 109
Score = 54.2 bits (130), Expect = 5e-09
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 28 AGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+ SV+ A +D+ + EL + GD+I + + WW G + + G FP +FVR
Sbjct: 26 SDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV--ADGEGWFPASFVR 83
Query: 88 VLGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHV-NDVID-------VLSEVEEG 139
+ + ++ D++ +V N+++ L ++ EG
Sbjct: 84 LRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQMRTNVINEILSTERDYIKHLRDICEG 143
Query: 140 WWRGRLRDRTGVFPSNFVEEI 160
+ R + R R +F + I
Sbjct: 144 YVR-QCRKRADMFSEEQLRTI 163
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 58.6 bits (142), Expect = 4e-12
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
DY + + R+G+ + I GGWW+ + + R P V
Sbjct: 24 SDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICV 70
Score = 55.5 bits (134), Expect = 5e-11
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEI 160
VL Y + + + V+S+ E GWW+ R P V +
Sbjct: 20 LAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARV 73
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 58.1 bits (141), Expect = 5e-12
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVEEIPA 162
F Y EL++ N+ + +L + + WWR R ++TG PSN+VE
Sbjct: 6 EEVVVVAKFDYVAQQEQELDIKKNERLWLL-DDSKSWWRVRNSMNKTGFVPSNYVE--RK 62
Query: 163 DTMTAESR 170
++ A +
Sbjct: 63 NSARAAAN 70
Score = 53.1 bits (128), Expect = 4e-10
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQ 97
FDY AQ+ EL ++K + + + S WW N+ G P N+V A A
Sbjct: 14 FDYVAQQEQELDIKKNERLW-LLDDSKSWWRV-RNSMNKTGFVPSNYVERKNSARAAAN 70
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 63.0 bits (152), Expect = 5e-12
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEIP 161
++++ P ADE+ + D+I V +G+ +G R RTG++PS V E
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI 500
Score = 55.3 bits (132), Expect = 2e-09
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 5 LRQAVDEGDFEQAKELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQS 64
+ Q + L ++ + ++ + + + ADE+ + GD+I
Sbjct: 416 IMQTLHPDASANFHSLDDIYYFGGQNAHNQIAI-YAHQPRTADEIPMEPGDIIGVAGNHW 474
Query: 65 GGWWEGLLVRENRRGMFPDNFVR 87
G+ +G+ + R G++P VR
Sbjct: 475 DGYSKGVNRKLGRTGLYPSYKVR 497
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 57.8 bits (140), Expect = 9e-12
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFV 86
+DY + D+L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLE-ESGEWWKARSLATRKEGYIPSNYV 56
Score = 56.3 bits (136), Expect = 4e-11
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEI 160
L+ Y + D+L D + VL E WW+ R + G PSN+V +
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV 59
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 60.3 bits (145), Expect = 1e-11
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR-LRDRTGVFPSNFVE 158
+R++ R LF + + ++L D++ + + EE WW + G+ P +VE
Sbjct: 131 LRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 190
Query: 159 EIPADTMTAES 169
+ + + +
Sbjct: 191 KYRPASASVSA 201
Score = 54.1 bits (129), Expect = 2e-09
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 22 PSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMF 81
S FD+ + ++L +KGD++ WW E +RGM
Sbjct: 126 GSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMI 184
Query: 82 PDNFVRVLGEAAAETQ 97
P +V A+A
Sbjct: 185 PVPYVEKYRPASASVS 200
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 55.5 bits (134), Expect = 4e-11
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD----RTGVFPSNFVEEI 160
+ Y + + ++VL GWW ++ D G PSN++E+
Sbjct: 13 YVSIADYE-GDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK 68
Score = 52.5 bits (126), Expect = 8e-10
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLV--RENRRGMFPDNFVRVL 89
DY E + ++G + + GWW ++ + +G P N++
Sbjct: 17 ADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK 68
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 55.5 bits (133), Expect = 4e-10
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 90 GEAAAETQVAMRKKPGRR-CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD- 147
G + + RK R ++++ + A +L L + DV+ + E W+RG L
Sbjct: 1 GSSGSSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRGYLIKH 59
Query: 148 --RTGVFPSNFVEEIPADTMTAESRHRKESNNNEADP 182
G+FP +F+ T E R E+ P
Sbjct: 60 KMLQGIFPKSFIHIKEV---TVEKRRNTENIIPAEIP 93
Score = 52.0 bits (124), Expect = 9e-09
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVR-ENRRGMFPDNFVRVLGEAAAETQ 97
+++ A +L+L+ GD++ I+ G W+ G L++ + +G+FP +F+ + E E +
Sbjct: 24 YNFQGSGAPQLSLQIGDVVR-IQETCGDWYRGYLIKHKMLQGIFPKSFIHIK-EVTVEKR 81
Query: 98 VAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPS 154
+ +V L E W + + + F
Sbjct: 82 RNTENIIPAEIPL---------------AQEVTTTLWEWGSIWKQLYVASKKERFLQ 123
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 52.7 bits (126), Expect = 6e-10
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 111 LFSYTPANADELELHVNDVIDVL-SEVEEGWWRGRL--RDRTGVFPSNFVEE 159
+ A L L+ D++++ +E E WW GR + G FP N V
Sbjct: 24 IPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
Score = 51.9 bits (124), Expect = 1e-09
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRENRRGMFPDNFVR 87
L L GD++ + ++ WWEG N G FP N V
Sbjct: 27 PPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 55.5 bits (134), Expect = 1e-09
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADTMTAES 169
++ YT N DEL +I+VL++ + WW+G + + G+FPSN+V+ + +
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQW 66
Score = 45.1 bits (107), Expect = 4e-06
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQ 97
+DYTAQ DEL KG +I + + WW+G + + G+FP N+V++ + Q
Sbjct: 9 YDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKLTTDMDPSQQ 65
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 51.5 bits (123), Expect = 1e-09
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 113 SYTPANADELELHVNDVIDVL-SEVEEGWWRGRL--RDRTGVFPSNFVE 158
A L L+ D++++ +E E WW GR + G FP N V
Sbjct: 18 PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
Score = 51.5 bits (123), Expect = 1e-09
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 41 YTAQEADELTLRKGDLITGIRVQS-GGWWEGLLVRENRRGMFPDNFVR 87
L L GD++ + ++ WWEG N G FP N V
Sbjct: 19 PPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 51.9 bits (124), Expect = 2e-09
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 107 RCRVLFSYTPANADELELHVNDVIDVLSEVE---EGWWRGRLRD--------RTGVFPSN 155
L Y + L +H V+ V S+++ +W G ++ R G FPS+
Sbjct: 24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83
Query: 156 FVEEI 160
V E
Sbjct: 84 IVRED 88
Score = 46.5 bits (110), Expect = 2e-07
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 35 ASVEFDYTAQEADELTLRKGDLIT---GIRVQSGGWWEG------LLVRENRRGMFPDNF 85
A DY A + LT+ +G ++ ++ + +W G R G FP +
Sbjct: 25 AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSI 84
Query: 86 VRVLGEAAAETQ 97
VR
Sbjct: 85 VREDQTLKPGKV 96
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 50.9 bits (121), Expect = 3e-09
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 39 FDYTAQEADELTLRKGDLITGIRV---------------QSGGWWEGLLVRENRRGMFPD 83
+DY + +++ L GD++T + + GW G RG FP
Sbjct: 12 YDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPG 71
Query: 84 NFVRVLGEAA 93
+V +G
Sbjct: 72 TYVEYIGRKK 81
Score = 50.1 bits (119), Expect = 6e-09
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 17/74 (22%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEV---------------EEGWWRGRLR-- 146
G + R L+ Y ++++LH+ D++ V E GW G
Sbjct: 4 EGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETT 63
Query: 147 DRTGVFPSNFVEEI 160
G FP +VE I
Sbjct: 64 GERGDFPGTYVEYI 77
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 48.1 bits (115), Expect = 4e-07
Identities = 12/73 (16%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEG-WWRGRLR-DRTGVFPSNFVEEIP 161
G C +++ +L DV+ +++ ++ W++ + + R G+ P+N+V+
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ--K 67
Query: 162 ADTMTAESRHRKE 174
+ + A ++
Sbjct: 68 REGVKAGTKLSLM 80
Score = 46.6 bits (111), Expect = 2e-06
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 20 LSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRG 79
+S + + + A +++ +L KGD++T + V W + R G
Sbjct: 1 MSAIQASWPSGTECIAK--YNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREG 58
Query: 80 MFPDNFVR 87
+ P N+V+
Sbjct: 59 IIPANYVQ 66
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 47.8 bits (114), Expect = 6e-07
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+DY A ++L+ +KGD + + +SG WW+ + + G P N+V
Sbjct: 15 YDYEAIHHEDLSFQKGDQMV-VLEESGEWWKARSLATRKEGYIPSNYVA 62
Score = 41.6 bits (98), Expect = 9e-05
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEGWWRGRL--RDRTGVFPSNFVEEIPADTMTAE 168
L+ Y + ++L D + VL E WW+ R + G PSN+V D++ E
Sbjct: 14 LYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV--ARVDSLETE 70
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 47.1 bits (112), Expect = 1e-06
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
+DY ++ +L+ +KG+ + + G WW + + G P N+V
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
Score = 42.1 bits (99), Expect = 5e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 108 CRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLR--DRTGVFPSNFVEEIP 161
L+ Y +L + + +++ E WW +TG PSN+V
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 46.8 bits (111), Expect = 1e-06
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 20 LSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRG 79
SP R V +DY ++ +L+ +KG+ + + G WW + + G
Sbjct: 73 TSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTG 132
Query: 80 MFPDNFVR 87
P N+V
Sbjct: 133 YIPSNYVA 140
Score = 43.7 bits (103), Expect = 2e-05
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEIP 161
L+ Y +L + + +++ E WW +TG PSN+V P
Sbjct: 84 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV--AP 141
Query: 162 ADTMTAESRHRKESNNNEA 180
+D++ AE + + E+
Sbjct: 142 SDSIQAEEWYFGKITRRES 160
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 45.5 bits (108), Expect = 3e-06
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 7 QAVDEGDFEQAKELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGG 66
Q + E +KE + + ++ A +D+ A + L++ KG+ + + G
Sbjct: 20 QGLSEAARWNSKENLLAGPSENDPNLFVAL--YDFVASGDNTLSITKGEKLRVLGYNHNG 77
Query: 67 WWEGLLVRENRRGMFPDNFVR 87
W +N +G P N++
Sbjct: 78 EWC-EAQTKNGQGWVPSNYIT 97
Score = 45.5 bits (108), Expect = 4e-06
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 104 PGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWW-RGRLRDRTGVFPSNFVEEI 160
L+ + + + L + + + VL G W + ++ G PSN++ +
Sbjct: 42 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 99
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 42.7 bits (100), Expect = 4e-06
Identities = 9/74 (12%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 92 AAAETQV-AMRKK--PGRRCRVLFSYTPANADELELHVNDVIDVLSEVE----EGWWRGR 144
++ + ++ + P + + ++ A ++ L D++ V+ + + + W
Sbjct: 1 GSSGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID 60
Query: 145 LRDRTGVFPSNFVE 158
G S+F++
Sbjct: 61 NGVTKGFVYSSFLK 74
Score = 37.3 bits (86), Expect = 4e-04
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 37 VEFDYTAQEADELTLRKGDLITGIRVQ----SGGWWEGLLVREN-RRGMFPDNFVRVLGE 91
E ++ A + +++L +GDL+ I+ + S W L+ +G +F++
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRW---LIDNGVTKGFVYSSFLKPYNP 78
Query: 92 AAAETQVAMRKKPG 105
+ + + G
Sbjct: 79 RRSHSDASSGPSSG 92
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 44.3 bits (104), Expect = 4e-06
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVR 87
Y +L KG+ + I QSG WW+ + + G P NFV
Sbjct: 19 HSYEPSHDGDLGFEKGEQLR-ILEQSGEWWKAQSLTTGQEGFIPFNFVA 66
Score = 39.3 bits (91), Expect = 2e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 100 MRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGR--LRDRTGVFPSNF 156
L SY P++ +L + + +L + WW+ + + G P NF
Sbjct: 7 ASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNF 64
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 41.1 bits (95), Expect = 1e-04
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 40 DYTAQEADE---LTLRKGDLI-----TGIRVQSGGWWEGLLVRENRRGMFPDNFVRVL 89
D +E L+ KGDLI TG +V + GW G+ R +RG FP + V V+
Sbjct: 581 DNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVM 638
Score = 31.1 bits (69), Expect = 0.29
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 99 AMRKKPGRRCRVLFSYTPANADE--LELHVNDVIDVLSE-----VEEGWWRGRLR--DRT 149
+RK+ + + PA + L D+I + + + GW G +
Sbjct: 568 GLRKRSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQR 627
Query: 150 GVFPSNFVEEIPADT 164
G FP++ V +P T
Sbjct: 628 GDFPTDCVYVMPTVT 642
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 39.8 bits (92), Expect = 2e-04
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 15/100 (15%)
Query: 109 RVLFSYTPANADELELHVNDVIDVLS---------EVEEGWWRGRLRDRT------GVFP 153
R F P+ L DV VL G W R G+ P
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIP 67
Query: 154 SNFVEEIPADTMTAESRHRKESNNNEADPAKALRRSGRGM 193
+ E A A+ ++ A+A RG+
Sbjct: 68 NQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGL 107
Score = 30.9 bits (69), Expect = 0.23
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 39 FDYTAQEADELTLRKGDLI---------TGIRVQSGGWWEGLLV----RENRRGMFP 82
F+ L +GD+ G GG W + + RE RG+ P
Sbjct: 11 FELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIP 67
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 38.7 bits (91), Expect = 5e-04
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 111 LFSYTPANADELELHVNDVIDVLSEVEEG---WWRGRLRDRTGVFPSNFVEEIP 161
L+ Y P N DEL + D + ++ +E WW RL D+ G P N + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
Score = 29.5 bits (67), Expect = 0.53
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 39 FDYTAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN-RRGMFPDNFV 86
+DY Q DEL +++GD +T I + E R N + G P N +
Sbjct: 177 WDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 36.0 bits (82), Expect = 0.006
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 6/111 (5%)
Query: 46 ADELTLRKGDLIT---GIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQVAMRK 102
A + L +GD I + + E +L + + + V
Sbjct: 44 AAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDV 103
Query: 103 KPGRRCRVLFSYTPANADELELHVND---VIDVLSEVEEGWWRGRLRDRTG 150
R F Y + L + + V+D L + G W +
Sbjct: 104 GDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNH 154
Score = 27.5 bits (60), Expect = 3.1
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 39 FDYTAQEADELTLRKGD---LITGIRVQSGGWWEGLLV----RENRRGMFPDNFVRVLGE 91
F+Y + L+ KG+ ++ + G W + + +E RG+ P N R
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIP-NKNRAEQL 171
Query: 92 AAAETQVAMRKKPGRRC 108
A+ + + R
Sbjct: 172 ASVQYTLPKTAGGDRAD 188
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 35.7 bits (81), Expect = 0.007
Identities = 23/156 (14%), Positives = 44/156 (28%), Gaps = 13/156 (8%)
Query: 46 ADELTLRKGDLIT---GIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQVAMRK 102
A + L +GD I + + E +L + + + V
Sbjct: 36 AAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDV 95
Query: 103 KPGRRCRVLFSYTPANADELELHVND---VIDVLSEVEEGWWRGRLRDRT------GVFP 153
R F Y + L + + V+D L + G W + G+ P
Sbjct: 96 GDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIP 155
Query: 154 SNFVEEIPADTMTAESRHRKESNNNEADPAKALRRS 189
+ E ++ + + + LR S
Sbjct: 156 NKNRAE-QLASVQYTLPKTAGGDRADFWRFRGLRSS 190
Score = 27.2 bits (59), Expect = 3.9
Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 14/156 (8%)
Query: 36 SVEFDYTAQEADELTLRKGD---LITGIRVQSGGWWEGLLV----RENRRGMFPDNFVRV 88
F+Y + L+ KG+ ++ + G W + + +E RG+ P N R
Sbjct: 102 RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIP-NKNRA 160
Query: 89 LGEAAAETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVEEGWWRGRLRDR 148
A+ + + + G R ++ + + + R+ R
Sbjct: 161 EQLASVQYTLP-KTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLR 219
Query: 149 TGVFPSNFV-----EEIPADTMTAESRHRKESNNNE 179
F ++ + + E + +E
Sbjct: 220 EAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE 255
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.009
Identities = 41/230 (17%), Positives = 71/230 (30%), Gaps = 86/230 (37%)
Query: 1 MEEALRQAVDEGDFEQAKELSPSRCNHAGSSVIEASVEFDYTAQEADELTLRK-GDLITG 59
M L + + A+++ ++ AD G I
Sbjct: 1631 MGMDLYKT-----SKAAQDV------------------WN----RADNHFKDTYGFSILD 1663
Query: 60 I--------RVQSGGWWEGLLVRENRRGM----FPDNFV---RVLGEAAAETQVAMRKKP 104
I + GG +G +REN M D + ++ E + +
Sbjct: 1664 IVINNPVNLTIHFGGE-KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 105 -GRRCRVLF--SYT-PANADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVE-- 158
G +L +T PA L+ +E+ + L+ + G+ P++
Sbjct: 1723 KG----LLSATQFTQPA---------------LTLMEKAAFE-DLKSK-GLIPADATFAG 1761
Query: 159 ----EI-----PADTMTAES-----RHRKESNNNEADPAKALRRSGRGMV 194
E AD M+ ES +R + A P L RS GM+
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQ-VAVPRDELGRSNYGMI 1810
Score = 28.9 bits (64), Expect = 1.4
Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 50/144 (34%)
Query: 49 LTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQVAMRKKPGRRC 108
LTL G L + V + ++ ++ + F ++L E
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQ--------EQFNKILPEPTEG------------- 47
Query: 109 RVLFSYTPANADE----LEL------HVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNF-- 156
A DE EL +V+ +++ + G + L F + +
Sbjct: 48 -------FAADDEPTTPAELVGKFLGYVSSLVE---PSKVGQFDQVLNLCLTEFENCYLE 97
Query: 157 -------VEEIPADTMTAESRHRK 173
++ + T + ++
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKE 121
Score = 26.2 bits (57), Expect = 9.4
Identities = 27/167 (16%), Positives = 47/167 (28%), Gaps = 48/167 (28%)
Query: 49 LTLRKGDLITGIRVQSGGWWEGLLVRENRRGMFPDNFVRVLGEAAAETQVAMRKKPGRRC 108
T L+T + + WE F + + + G RC
Sbjct: 270 ATGHSQGLVTAVAIAETDSWES----------FFVSVRKAI-TVLFFI--------GVRC 310
Query: 109 RVLF---SYTPAN-ADELE---------LHVNDV--IDVLSEVEEGWWRGRLRDRTGVF- 152
+ S P+ D LE L ++++ V V + L V
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK--TNSHLPAGKQVEI 368
Query: 153 -----PSNFVEEI--PADTMTAESRH-RKESNNNEADPAKALRRSGR 191
N V + P ++ + RK + D ++ S R
Sbjct: 369 SLVNGAKNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSER 412
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus
norvegicus}
Length = 82
Score = 31.1 bits (70), Expect = 0.055
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 21 SPSRCNHAGSSVIEAS-VEFDYTAQEADELTLRKGDLITGIR--VQSGGWWEGLLVRENR 77
SP S E + V D++A + EL+++ G + + + GW LVR
Sbjct: 5 SPGIPGSTLSGGCELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWC---LVRTTE 61
Query: 78 R-----GMFPDNFVRV 88
R G+ P + + +
Sbjct: 62 RSPPQEGLVPSSTLCI 77
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains,
FXR2, structura genomics, structural genomics
consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A
2bkd_N*
Length = 128
Score = 31.6 bits (71), Expect = 0.063
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 19/103 (18%)
Query: 55 DLITGIRVQSGGWWEGLLVRENRRGMFPDNF-VRVLGEAAAETQVAMRKKPGRRCRVLFS 113
L +R +G +++G + + + D+ + +E Q+ P R+
Sbjct: 5 GLPVEVRGSNGAFYKGFV-----KDVHEDSVTIFFENNWQSERQI-----PFGDVRL--- 51
Query: 114 YTPANADELELHVNDVIDVLSEVEE----GWWRGRLRDRTGVF 152
P E+ D ++V S E GWW R+R G F
Sbjct: 52 -PPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDF 93
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 31.0 bits (69), Expect = 0.21
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 88 VLGEAAAETQVAMRKKPGRRCRVLFSYTPANADE-------LELHVNDVIDVLSEVEEGW 140
+A A+ + A K R SY+ A+ D+ + D + V + W
Sbjct: 21 AERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDW 80
Query: 141 WRGRL---RDRTGVFPSNFVEE 159
W GRL G PS E
Sbjct: 81 WIGRLVKEGCEIGFIPSPVKLE 102
Score = 26.3 bits (57), Expect = 7.9
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 3 EALRQAVDEGDFEQAKELSPSRCNHAGSSVIEASVEFDYTAQE-----ADELTLRKGDLI 57
EA+R+ + Q ++ A + +V + ++ ++ D +
Sbjct: 15 EAVRREAERQAQAQLEKAKTKPVAFA----VRTNVSYSAAHEDDVPVPGMAISFEAKDFL 70
Query: 58 TGIRVQSGGWWEGLLVREN 76
+ WW G LV+E
Sbjct: 71 HVKEKFNNDWWIGRLVKEG 89
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 30.5 bits (69), Expect = 0.30
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 109 RVLFSYTPANAD-----ELELHVNDVIDVLSEVEEGWWRGRL------RDRTGVFPSNFV 157
R LF Y L DV+ V+ +E WW+ R D G PS
Sbjct: 5 RALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRR 64
Query: 158 EE 159
E
Sbjct: 65 VE 66
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 30.1 bits (68), Expect = 0.39
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 102 KKPGRRCRVLFSYTPANADE-----LELHVNDVIDVLSEVEEGWWRGRL------RDRTG 150
+K R LF Y P D L D++ V + ++ WW+ R ++ G
Sbjct: 2 QKRSLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIG 61
Query: 151 VFPSNFVEE 159
+ PS E
Sbjct: 62 IVPSKRRWE 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.51
Identities = 27/214 (12%), Positives = 56/214 (26%), Gaps = 70/214 (32%)
Query: 2 EEALRQAVDEGDF---EQAKELSPSRCNHAGSSVIEASVEFDYTAQ-EADEL-TLRKGDL 56
+ L + +D + +P R + S+ + +D D+L T+ + L
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 57 ITGIRVQSGGWWEGLLVRENRR-----GMFPDNFVR----VLGE--AAAETQVAM----- 100
L E R+ +FP + +L M
Sbjct: 364 ------------NVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 101 --------RKKPGRRCRV---LFSYTPANADELELH---VN--------DVIDVLSEVEE 138
++ + +E LH V+ D D++ +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 139 GWW---------RGRLRDRTGVFPS-----NFVE 158
++ +R +F F+E
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Score = 28.3 bits (62), Expect = 2.2
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 113 SYTPANADELELHVNDVIDVLSEVEEGWWRGRLRD--RTGVFPSNFVEEIPADTMTAESR 170
Y N + E VN ++D L ++EE + D R + + E I + R
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQVQR 589
>2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding,
HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A
{Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A*
2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A
3ll2_A* 3ll1_A
Length = 122
Score = 28.5 bits (64), Expect = 0.78
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 36 SVEFDYTAQ------EADELTLRKGDLITGIRVQSGGWWEGLLVRENR 77
++ D + T G+ I+ + ++SG + + + N
Sbjct: 32 AIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNM 79
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 74
Score = 27.5 bits (60), Expect = 0.81
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 29 GSSVIEASVEFDYTAQEADELTLRKGDLITGIRVQSGGWW 68
GSS +V DY A + +E+ + +G+++ + V
Sbjct: 4 GSSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMC 43
>3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding
protein; 1.65A {Homo sapiens}
Length = 141
Score = 28.7 bits (64), Expect = 0.88
Identities = 6/66 (9%), Positives = 21/66 (31%), Gaps = 11/66 (16%)
Query: 27 HAGSSVIEASVEFDY----------TAQEADELTLRKGDLITGIRVQSGGWWEGLLVREN 76
+ I ++ Y + +E+ L G+ + + + + + L+ +
Sbjct: 37 RVNTYYIV-GLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTD 95
Query: 77 RRGMFP 82
+
Sbjct: 96 KGRYLS 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.97
Identities = 7/34 (20%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 6 RQAVDEGDFEQAKEL-SPSRCNHAGSSVIEASVE 38
+QA+ + + + +L + + A + I+A++E
Sbjct: 19 KQALKK--LQASLKLYAD---DSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 1.5
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 95 ETQVAMRKKPGRRCRVLFSYTPANADELELHVNDVID 131
E Q A++K L Y +A L + ++
Sbjct: 18 EKQ-ALKKLQAS----LKLYADDSAPALA--IKATME 47
>2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding,
HIV, sugar binding protein; 2.00A {Griffithsia} SCOP:
b.77.3.1
Length = 138
Score = 28.2 bits (63), Expect = 1.1
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 36 SVEFDYTAQ------EADELTLRKGDLITGIRVQSGGWWEGLLVRENR 77
++ D + T G+ I+ + ++SG + + + N
Sbjct: 48 AIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNM 95
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex
(helicase/DNA), DNA unwinding, hydrolase/DNA complex;
HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19
c.37.1.19
Length = 673
Score = 29.0 bits (66), Expect = 1.2
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 153 PSNFVEEIPADTMTAESRHRKESNNNEADPAKALRRSGRGMVEGAAAR 200
PS F+ E+P D + E + S ++ + + M+ +
Sbjct: 626 PSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRGK 673
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex
protein TAS3; PIN, rossmann fold, SPOC, alpha-helical
hairpin, heterochrom silencing, RITS, RNAI, argonaute;
2.90A {Saccharomyces cerevisiae}
Length = 207
Score = 27.4 bits (60), Expect = 2.5
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 119 ADELELHVNDVIDVLSEVEEGWWRGRLRDRTGVFPSNFVEEIPADTMTAESRHR 172
++L++ ND+I+ E G FP N + T++ E H
Sbjct: 112 PEDLDMEDNDIIEAHREQIGGLPSLPFLACISDFPENHGTSRRSATVSLERVHE 165
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 25.4 bits (55), Expect = 6.6
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 120 DELELHVNDVIDVL--SEVEEGWWRGRLRD-RTGVFPSNFVE 158
+EL + I+++ ++ EG W GR G + VE
Sbjct: 42 NELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVE 83
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics, MCSG; 2.09A {Listeria innocua}
Length = 236
Score = 26.1 bits (58), Expect = 6.8
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 69 EGLLVRENRRGMF--PDNFVRVLGEAAAETQVAMRKKPGRRCRVL-FSYTPANADE---L 122
EGL+VR+N G++ P + + E + + + + F A
Sbjct: 60 EGLVVRKNGVGLYVQPKLTAQNILEMTGVMKNDTNE--NLKKDIKDFYIRKAGKFYAEIF 117
Query: 123 ELHVNDVI 130
+ N+++
Sbjct: 118 GMKENELV 125
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix
motif, structural genom transcription; 2.05A {Pyrococcus
horikoshii} SCOP: a.4.5.28
Length = 100
Score = 25.1 bits (55), Expect = 8.0
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 98 VAMRKKPGRRCRVLFSYTPANADELELHVNDVIDVLSEVE 137
V K R R + T +E + ++ + V+ ++
Sbjct: 60 VKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAVIDGLD 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.385
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,244,831
Number of extensions: 196909
Number of successful extensions: 1330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 435
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)