BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4222
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 225 YIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
+ E S L++ V DK N+ PLH AA GS++ ++ L G K + ++K+G TP
Sbjct: 119 WFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 283 L 283
L
Sbjct: 178 L 178
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 225 YIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
+ E S L++ V DK N+ PLH AA GS++ ++ L G K + ++K+G TP
Sbjct: 119 WFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 283 L 283
L
Sbjct: 178 L 178
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 225 YIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
+ E S L++ V DK N+ PLH AA GS++ ++ L G K + ++K+G TP
Sbjct: 119 WFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 283 L 283
L
Sbjct: 178 L 178
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLD 284
VN D + TPLH+AAK G E VK LI A + TS + +G+TPLD
Sbjct: 96 VNAKD-SDGRTPLHYAAKEGHKEIVKLLISKGADVNTS--DSDGRTPLD 141
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
VN D + TPLH+AAK G E VK LI + ++ +G+TPL
Sbjct: 63 VNAKD-SDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPL 107
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
VN D + TPLH+AAK G E VK LI + ++ +G+TPL
Sbjct: 30 VNASD-SDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPL 74
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 217 LYDSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 274
L+ + ++E +LL+ VN DK TPLH AA+ G +E VK L+ A +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLL-EAGADVNA 63
Query: 275 RNKEGKTPL 283
++K G+TPL
Sbjct: 64 KDKNGRTPL 72
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 217 LYDSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 274
L+ + ++E +LL+ VN DK TPLH AA+ G +E VK L+ A +
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLL-EAGADVNA 96
Query: 275 RNKEGKTPL 283
++K G+TPL
Sbjct: 97 KDKNGRTPL 105
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH AA+ G +E VK L+ A + ++K G+TPL
Sbjct: 3 RTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPL 39
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 36.2 bits (82), Expect = 0.029, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
VN DK TPLH AA+ G +E VK L+ A + ++K G+TPL
Sbjct: 28 VNAKDKN-GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPL 72
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH AA+ G +E VK L+ A + ++K G+TPL
Sbjct: 4 TPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPL 39
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 165 DNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP 223
D R L+++G D +G Y LH++ + + + E+LL+ + + D TP
Sbjct: 16 DEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKD--KDGYTP 71
Query: 224 -------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 274
++E ++LL VN DK TPLH AA+ G +E V+ L+ A +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNA 129
Query: 275 RNKEGKTPLD 284
++K GKTP D
Sbjct: 130 QDKFGKTPFD 139
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 189 LHVSTKAVNPAMTEMLLEIIGNPAFTNLL-YDSDTP-------SYIERSDILLDLYVNT- 239
LH++ + + + E+LL+ N A N L + TP ++E ++LL +
Sbjct: 51 LHLAARVGHLEIVEVLLK---NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN 107
Query: 240 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
D + TPLH AA G +E V+ L+ + ++K GKT D S
Sbjct: 108 ADDTIGSTPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDIS 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 165 DNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP 223
D R L+++G D +G Y LH++ + + + E+LL+ + + D TP
Sbjct: 16 DEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKD--KDGYTP 71
Query: 224 -------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 274
++E ++LL VN DK TPLH AA+ G +E V+ L+ A +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNA 129
Query: 275 RNKEGKTPLD 284
++K GKTP D
Sbjct: 130 QDKFGKTPFD 139
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 165 DNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL-----LY 218
D R L+++G D ++G Y LH++ + + E+LL+ + ++L L+
Sbjct: 28 DEVRILMANGADVNATDNDG--YTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLH 85
Query: 219 DSDTPSYIERSDILL--DLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
+ ++E ++LL VN D TPLH AAK+G +E V+ L+ + ++
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQD 143
Query: 277 KEGKTPLDSS 286
K GKT D S
Sbjct: 144 KFGKTAFDIS 153
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 247 TPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLD 284
TPLH AA+ G E VK LI A + TS + +G+TPLD
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTS--DSDGRTPLD 141
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 230 DILLDLYVNTPD----KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
D + DL N D + TPLH AA+ G E VK LI + ++ +G+TPL
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPL 74
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 183 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLY- 236
G AL V K NP + LL NP + +++D+ +++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 237 -VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
VN D N PLH AAK G + V+ L+ RN +G T D
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 34.3 bits (77), Expect = 0.099, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAA 306
TPLH AAK G E VK+L+ + R+K+G TP L L H +++ + A
Sbjct: 11 TPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTP------LHLAAKNGHAEIVKLLLA 63
Query: 307 KKDETNGNTVD 317
K + N + D
Sbjct: 64 KGADVNARSKD 74
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
VN K N TPLH AAK G E VK L+ + R+K+G TP
Sbjct: 35 VNARSKDGN-TPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTP 78
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 183 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLY- 236
G AL V K NP + LL NP + +++D+ +++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 237 -VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
VN D N PLH AAK G + V+ L+ RN +G T D
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
VN D A+ ETPLH A +G +E V+ L+ + ++K GKT D S
Sbjct: 73 VNAID-AIGETPLHLVAMYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDIS 120
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 183 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLY- 236
G AL V K NP + LL NP + +++D+ +++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 237 -VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
VN D N PLH AAK G + V+ L+ RN +G T D
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN--------LLYDSDTPSYIERSDILL 233
EGC N L V A + + E+ I+ + + L+ + + + E + LL
Sbjct: 3 EGCVSN-LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 61
Query: 234 DLYVNTPDKA-LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
L V DK +PLH AA G E VK L+G Q + N+ G TPL
Sbjct: 62 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPL 111
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN--------LLYDSDTPSYIERSDILL 233
EGC N L V A + + E+ I+ + + L+ + + + E + LL
Sbjct: 2 EGCVSN-LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 234 DLYVNTPDKA-LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
L V DK +PLH AA G E VK L+G Q + N+ G TPL
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPL 110
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
VN DK TPLH AA+ G +E V+ L+ A + ++K+G TPL
Sbjct: 40 VNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPL 84
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
VN DK TPLH AA+ G +E V+ L+ A + ++K+G TPL
Sbjct: 73 VNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPL 117
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 165 DNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP 223
D R L+++G D +G Y LH++ + + + E+LL+ + + D TP
Sbjct: 28 DEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKD--KDGYTP 83
Query: 224 -------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 274
++E ++LL VN DK TPLH AA+ G +E V+ L+ A +
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLL-KAGADVNA 141
Query: 275 RNKEGKTPLDSS 286
++K GKT D S
Sbjct: 142 QDKFGKTAFDIS 153
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 109 SPSTVTAADPSALPQMSSLAAAEKP--SP--FKSLKSQELVKLRKLIEKGNLADVRKLVW 164
+P ADP A ++ L + P SP FK ++ ++++K ++ G L + W
Sbjct: 133 NPVNALKADPQATSELQKLVSPHHPMSSPGYFKDIQ----IRIQKFVDSGQLGIFKNGYW 188
Query: 165 DNPRYLVS-SGDFPTILH 181
NP Y +S D + H
Sbjct: 189 SNPAYKLSPEADLMAVTH 206
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD 290
ET LH AA++ + KRL+ A ++++ G+TPL ++ D
Sbjct: 26 ETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSAD 69
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
TPLH AAK+G +E V+ L+ + ++K GKT D S
Sbjct: 115 TPLHLAAKWGYLEIVEVLLKHGA-DVNAQDKFGKTAFDIS 153
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 183 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLD--L 235
G AL V K NP + LL NP + +++D+ +++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 236 YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
VN D N PLH AAK G + V+ L+ RN +G T D
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 183 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLY- 236
G AL V K NP + LL NP + +++D+ ++ LL+
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 237 -VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
VN D N PLH AAK G + V+ L+ RN +G T D
Sbjct: 95 DVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE 293
VN D A TPLH AAK G +E V+ L+ + R+ G+TPL ++ + LE
Sbjct: 40 VNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGA-DVNARDIWGRTPLHLAATVGHLE 94
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 238 NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD 290
N D+ ET LH AA++ + KRL+ A +++ G+TPL ++ D
Sbjct: 16 NQTDRT-GETALHLAARYSRSDAAKRLL-EASADAXIQDNMGRTPLHAAVSAD 66
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD 290
ET LH AA++ + KRL+ A ++++ G+TPL ++ D
Sbjct: 58 ETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSAD 101
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
TPLH+AA+ G E VK L+ + + +G+TPLD
Sbjct: 105 TPLHYAAENGHKEIVKLLL-SKGADPNTSDSDGRTPLD 141
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH+AA+ G E VK L+ + ++ +G+TPL
Sbjct: 39 TPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPL 74
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH+AA+ G E VK L+ + ++ +G+TPL
Sbjct: 72 TPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPL 107
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD 290
ET LH AA++ + KRL+ A ++++ G+TPL ++ D
Sbjct: 59 ETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSAD 102
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
VN D L TPLH AA FG +E V+ L+ + ++ G TPL
Sbjct: 73 VNAYD-TLGSTPLHLAAHFGHLEIVEVLLKNGA-DVNAKDDNGITPL 117
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
TPLH AA FG +E V+ L+ + ++K GKT D S
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDIS 153
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 224 SYIERSDILLDLYVNTPDKAL-NETPLHFAAKFGSVECVKRLI 265
Y E S LL+ N D+ L ETPL A+K+G E VK+L+
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 225 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
Y+ ++ L+D P A T LH AAK G E V+ L+ ++ + ++ G TP+
Sbjct: 62 YLIKAGALVD-----PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 285 SSSGLDLLENYLHTKLLDTVAAKKDETN 312
++ Y H L+ + +K + N
Sbjct: 117 WAT------EYKHVDLVKLLLSKGSDIN 138
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS 287
++PLH AA+ +CV + +++NKEG+TPL +S
Sbjct: 178 DSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCAS 218
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 217 LYDSDTPSYIERSDILL--DLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 274
LY + ++E ++LL VN D A+ TPLH AA G +E + L+ +
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVD-AIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNA 108
Query: 275 RNKEGKTPLDSSSG 288
++K GKT D S G
Sbjct: 109 QDKFGKTAFDISIG 122
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH AA+ G E VK L+ + ++ +GKTPL
Sbjct: 39 TPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPL 74
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH AA+ G E VK L+ + ++ +GKTPL
Sbjct: 72 TPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPL 107
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
TPLH AA+ G E VK L+ + + +G+TPLD
Sbjct: 105 TPLHLAAENGHKEVVKLLL-SQGADPNTSDSDGRTPLD 141
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 165 DNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN------PAFTNLLY 218
D R L+++G H+ LH++ +P + E+LL+ + +T L
Sbjct: 28 DEVRILMANG-ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHL 86
Query: 219 DSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
+D ++E ++LL VN D A TPLH AA G +E V+ L+ + ++
Sbjct: 87 AADN-GHLEIVEVLLKYGADVNAQD-AYGLTPLHLAADRGHLEIVEVLLKHGA-DVNAQD 143
Query: 277 KEGKTPLDSS 286
K GKT D S
Sbjct: 144 KFGKTAFDIS 153
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
TPLH AA FG +E V+ L+ + ++K GKT D S
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGA-DVNAQDKFGKTAFDIS 120
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS 287
ETPLH AA+ G E K L+ K + + + K+ +TPL ++
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAA 88
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 23/157 (14%)
Query: 147 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI----LHEGCRYNA--------LHVSTK 194
++ L+++G +V + + P ++ + + L + NA LH + +
Sbjct: 30 VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR 89
Query: 195 AVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNE-------- 246
+ M ++LLE NP TP +I + ++ + +K ++
Sbjct: 90 IGHTNMVKLLLENNANPNLAT--TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF 147
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH AAK+G V V L+ + K G TPL
Sbjct: 148 TPLHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPL 183
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 189 LHVSTKAVNPAMTEMLLEI-----IGNPAFTNLLYDSDTPSYIERSDILL--DLYVNTPD 241
LH++ + + M +LL +GN + L+ ++ +D+L+ + V+
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 242 KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS 287
+ + TPLH A+ +G+++ VK L+ + + + K G +PL ++
Sbjct: 309 R-MGYTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYSPLHQAA 352
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH AA+ G E V L+ + ++ NK G TPL
Sbjct: 247 TPLHLAAQEGHAEMVALLL-SKQANGNLGNKSGLTPL 282
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.2 bits (69), Expect = 0.88, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
TPLH AA+ G +E VK L+ A + ++K GKT D S
Sbjct: 41 TPLHLAARNGHLEVVKLLLE-AGADVNAQDKFGKTAFDIS 79
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
VN DK + +TPLH AA +G +E V+ L+
Sbjct: 73 VNAADK-MGDTPLHLAALYGHLEIVEVLL 100
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
TPLH AA+ G +E VK L+ A ++K GKT D S
Sbjct: 59 TPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDIS 97
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
VN DK TPLH AA+ G +E V+ L+ A + ++K GKT D S
Sbjct: 28 VNAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDIS 75
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE 293
TPLH AA G +E V+ L+ + N G+TPL ++ D LE
Sbjct: 48 HTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLE 94
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 55/158 (34%)
Query: 135 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI--------LHEGCRY 186
PF + + + L+ + + KG++ V YL+ +G P + LHE C +
Sbjct: 4 PFTNHRGETLLHIASI--KGDIPSVE--------YLLQNGSDPNVKDHAGWTPLHEACNH 53
Query: 187 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNE 246
L V E+LL+ + A N T Y N+
Sbjct: 54 GHLKV---------VELLLQ---HKALVN------TTGY------------------QND 77
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
+PLH AAK G V+ VK L+ + +V N G P+D
Sbjct: 78 SPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVD 114
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
VN D +TPLH AA G +E V+ L+ + ++K GKT D S
Sbjct: 106 VNAVDT-WGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDIS 153
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
VN D +TPLH AA G +E V+ L+ + ++K GKT D S
Sbjct: 106 VNAVDT-WGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDIS 153
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
VN D A TPLH AAK G +E V+ L+ + + G+TPL
Sbjct: 40 VNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGA-DVNASDSWGRTPL 84
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
VN D + TPLH AA G +E V+ L+ + ++K GKT D S
Sbjct: 73 VNASD-SWGRTPLHLAATVGHLEIVEVLLEYGA-DVNAQDKFGKTAFDIS 120
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286
TPLH AAK G +E V+ L+ + ++K GKT D S
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGA-DVNAQDKFGKTAFDIS 153
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 239 TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE 293
D +L TPLH AA G +E V+ L+ + + G TPL ++ + LE
Sbjct: 74 NADDSLGVTPLHLAADRGHLEVVEVLLKNGA-DVNANDHNGFTPLHLAANIGHLE 127
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 218 YDSDTPSYI-------ERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCA 268
YD TP ++ E +L D +N P+ TPLH A + + ++ L+ A
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-A 214
Query: 269 KIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNTV 316
+ R G+TPL S+ L N + +LL A + E G+ +
Sbjct: 215 GADPTARMYGGRTPLGSAL---LRPNPILARLLRAHGAPEPEDGGDKL 259
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 218 YDSDTPSYI-------ERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCA 268
YD TP ++ E +L D +N P+ TPLH A + + ++ L+ A
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-A 214
Query: 269 KIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNTV 316
+ R G+TPL S+ L N + +LL A + E G+ +
Sbjct: 215 GADPTARMYGGRTPLGSAL---LRPNPILARLLRAHGAPEPEDGGDKL 259
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 241 DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
+K T LH+AA+ + VK L+G ++++GKTP+
Sbjct: 275 EKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPI 317
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD 290
T LH AA + + KRL+ A ++++ G+TPL ++ D
Sbjct: 59 TALHLAAAYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSAD 101
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN 187
+K + +E GN A KL W +Y + P+ L E YN
Sbjct: 180 LKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYN 222
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
T LH+ + EC+K L+ K + N+ G+TPLD
Sbjct: 207 TALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLD 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,194,544
Number of Sequences: 62578
Number of extensions: 411651
Number of successful extensions: 1248
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 118
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)