Query psy4222
Match_columns 367
No_of_seqs 572 out of 2399
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:57:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 99.9 3.1E-26 1.1E-30 198.5 15.7 139 145-294 6-151 (169)
2 4b93_B Ankyrin repeat domain-c 99.9 1.3E-24 4.3E-29 202.0 15.5 152 140-294 8-200 (269)
3 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.7E-24 1.3E-28 184.0 15.6 145 139-294 10-161 (169)
4 2rfa_A Transient receptor pote 99.9 4.7E-24 1.6E-28 191.9 16.7 143 143-295 3-170 (232)
5 4b93_B Ankyrin repeat domain-c 99.9 8.9E-25 3.1E-29 203.0 10.6 151 136-297 79-236 (269)
6 3v30_A DNA-binding protein rfx 99.9 6.3E-24 2.1E-28 182.6 13.2 141 144-294 3-150 (172)
7 1awc_B Protein (GA binding pro 99.9 1.4E-23 4.6E-28 177.4 13.9 139 144-294 3-148 (153)
8 2rfm_A Putative ankyrin repeat 99.9 5.5E-24 1.9E-28 186.4 11.8 145 139-294 31-182 (192)
9 2etb_A Transient receptor pote 99.9 4.7E-24 1.6E-28 195.1 11.7 146 143-293 2-188 (256)
10 1oy3_D Transcription factor in 99.9 1.2E-23 4.2E-28 193.9 14.2 145 139-293 5-206 (282)
11 3v31_A Ankyrin repeat family A 99.9 8.5E-24 2.9E-28 180.9 12.2 140 144-294 4-150 (167)
12 2xai_A ASB-9, ankyrin repeat a 99.9 2.2E-23 7.5E-28 191.8 14.3 142 143-294 3-149 (261)
13 2jab_A H10-2-G3; HER2, darpin, 99.9 6.1E-23 2.1E-27 170.2 15.0 119 139-294 10-128 (136)
14 3hra_A Ankyrin repeat family p 99.9 4.2E-23 1.4E-27 181.4 14.7 145 139-294 35-193 (201)
15 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.9E-23 6.6E-28 177.4 11.9 140 143-294 5-152 (162)
16 3twr_A Tankyrase-2; ankyrin re 99.9 3E-23 1E-27 177.1 13.0 143 140-293 5-154 (165)
17 1yyh_A HN1;, notch 1, ankyrin 99.9 3.7E-23 1.3E-27 189.3 14.2 143 141-294 55-205 (253)
18 1ikn_D Protein (I-kappa-B-alph 99.9 2E-23 6.8E-28 188.6 11.9 149 136-294 38-199 (236)
19 1oy3_D Transcription factor in 99.9 2.4E-23 8.4E-28 191.8 12.3 145 140-294 42-240 (282)
20 2f8y_A Notch homolog 1, transl 99.9 5.3E-23 1.8E-27 183.6 14.2 144 140-294 22-173 (223)
21 3b7b_A Euchromatic histone-lys 99.9 8.6E-23 2.9E-27 184.0 15.2 149 135-294 3-159 (237)
22 3d9h_A CDNA FLJ77766, highly s 99.9 7.1E-23 2.4E-27 191.2 15.0 148 137-294 53-205 (285)
23 3ljn_A Hypothetical protein; a 99.9 3.6E-23 1.2E-27 199.0 13.3 146 138-294 15-188 (364)
24 3f6q_A Integrin-linked protein 99.9 2.1E-23 7.1E-28 180.8 10.4 143 141-293 3-152 (179)
25 2rfa_A Transient receptor pote 99.9 6E-23 2.1E-27 184.6 13.2 146 139-294 33-212 (232)
26 3aaa_C Myotrophin, protein V-1 99.9 9.3E-23 3.2E-27 166.0 12.9 114 141-291 5-118 (123)
27 3aji_A 26S proteasome non-ATPa 99.9 2.1E-22 7E-27 180.8 16.3 145 139-294 36-187 (231)
28 2dzn_A Probable 26S proteasome 99.9 1.1E-22 3.8E-27 182.0 14.0 201 144-364 3-218 (228)
29 1k1a_A B-cell lymphoma 3-encod 99.9 1.8E-22 6.1E-27 181.9 15.3 147 140-293 6-164 (241)
30 1yyh_A HN1;, notch 1, ankyrin 99.9 8.1E-23 2.8E-27 187.0 12.9 147 139-295 86-239 (253)
31 1k1a_A B-cell lymphoma 3-encod 99.9 3.7E-22 1.3E-26 179.9 16.6 146 139-294 42-198 (241)
32 2dzn_A Probable 26S proteasome 99.9 7.4E-23 2.5E-27 183.1 11.7 145 141-294 34-189 (228)
33 2xai_A ASB-9, ankyrin repeat a 99.9 9.6E-23 3.3E-27 187.5 12.5 153 135-298 61-218 (261)
34 1d9s_A Cyclin-dependent kinase 99.9 6.1E-23 2.1E-27 170.2 10.0 118 139-294 8-126 (136)
35 3b7b_A Euchromatic histone-lys 99.9 2.2E-22 7.6E-27 181.3 14.5 149 139-297 73-228 (237)
36 1sw6_A Regulatory protein SWI6 99.9 3.1E-23 1.1E-27 197.6 9.1 146 134-290 121-327 (327)
37 2f8y_A Notch homolog 1, transl 99.9 3.5E-22 1.2E-26 178.3 15.2 145 140-294 55-206 (223)
38 1s70_B 130 kDa myosin-binding 99.9 6.8E-22 2.3E-26 184.3 17.3 144 141-294 38-247 (299)
39 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.9E-22 1.3E-26 168.4 14.0 139 143-294 2-148 (156)
40 3jxi_A Vanilloid receptor-rela 99.9 9.4E-23 3.2E-27 186.7 10.8 144 142-291 4-188 (260)
41 2pnn_A Transient receptor pote 99.9 2E-22 6.8E-27 186.2 13.1 149 138-291 8-196 (273)
42 3aji_A 26S proteasome non-ATPa 99.9 1.5E-22 5.3E-27 181.6 11.9 144 139-293 69-219 (231)
43 3c5r_A BARD-1, BRCA1-associate 99.9 1.1E-22 3.7E-27 168.6 9.5 118 140-294 7-124 (137)
44 1s70_B 130 kDa myosin-binding 99.9 9.5E-23 3.2E-27 190.1 10.2 139 139-288 69-274 (299)
45 4hbd_A KN motif and ankyrin re 99.9 1.7E-22 5.7E-27 188.0 11.2 147 138-294 106-265 (276)
46 2etb_A Transient receptor pote 99.9 4.7E-23 1.6E-27 188.5 7.1 145 140-294 40-236 (256)
47 3hra_A Ankyrin repeat family p 99.9 8E-22 2.7E-26 173.1 14.2 140 142-291 4-152 (201)
48 3utm_A Tankyrase-1; tankyrase, 99.9 7.7E-22 2.6E-26 187.0 15.0 158 124-294 74-295 (351)
49 3kea_A K1L; tropism, ANK repea 99.9 6E-23 2E-27 191.8 6.0 142 143-294 62-210 (285)
50 3d9h_A CDNA FLJ77766, highly s 99.9 7.7E-22 2.6E-26 184.2 12.4 138 144-293 93-236 (285)
51 4gpm_A Engineered protein OR26 99.9 1.8E-21 6.3E-26 168.4 13.8 123 141-274 35-164 (169)
52 1ikn_D Protein (I-kappa-B-alph 99.9 1.3E-22 4.4E-27 183.3 6.6 145 139-294 4-166 (236)
53 4g8k_A 2-5A-dependent ribonucl 99.9 4.5E-21 1.5E-25 182.4 17.3 139 139-287 21-210 (337)
54 2fo1_E LIN-12 protein; beta-ba 99.9 1.8E-21 6.1E-26 188.7 14.7 152 134-295 157-329 (373)
55 3ljn_A Hypothetical protein; a 99.9 1.5E-21 5.2E-26 187.6 13.6 139 142-293 52-225 (364)
56 3jxi_A Vanilloid receptor-rela 99.9 1.6E-22 5.4E-27 185.2 6.3 144 141-294 44-240 (260)
57 1wdy_A 2-5A-dependent ribonucl 99.9 4.5E-21 1.5E-25 176.2 16.1 144 141-294 3-163 (285)
58 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.6E-21 8.8E-26 156.5 12.7 115 143-294 2-116 (126)
59 1n11_A Ankyrin; clathrin, BAND 99.9 1.5E-21 5.3E-26 192.0 13.4 143 140-293 11-160 (437)
60 3utm_A Tankyrase-1; tankyrase, 99.9 3.8E-21 1.3E-25 182.3 15.6 173 139-332 54-289 (351)
61 2pnn_A Transient receptor pote 99.9 2.6E-22 8.8E-27 185.4 7.3 145 140-294 51-248 (273)
62 1wdy_A 2-5A-dependent ribonucl 99.9 5.1E-21 1.7E-25 175.9 15.3 145 139-294 68-234 (285)
63 1n11_A Ankyrin; clathrin, BAND 99.9 3E-21 1E-25 190.0 14.2 141 142-293 244-391 (437)
64 1bi7_B P16INK4A, MTS1, multipl 99.9 7.5E-22 2.6E-26 167.4 8.5 115 142-294 11-126 (156)
65 3deo_A Signal recognition part 99.9 2.9E-21 9.9E-26 168.3 12.1 113 140-289 41-153 (183)
66 2fo1_E LIN-12 protein; beta-ba 99.9 2.8E-21 9.5E-26 187.3 13.3 155 127-294 185-361 (373)
67 3eu9_A Huntingtin-interacting 99.9 4.3E-21 1.5E-25 172.1 13.2 145 141-295 74-226 (240)
68 1ycs_B 53BP2, P53BP2; ankyrin 99.8 4.3E-21 1.5E-25 174.4 12.5 130 124-293 21-153 (239)
69 2vge_A RELA-associated inhibit 99.8 8.6E-21 3E-25 171.9 13.6 119 139-294 17-138 (229)
70 3ehr_A Osteoclast-stimulating 99.8 4E-21 1.4E-25 172.1 10.6 117 142-295 72-189 (222)
71 3eu9_A Huntingtin-interacting 99.8 1.4E-20 4.7E-25 168.8 13.0 141 140-291 6-154 (240)
72 3ui2_A Signal recognition part 99.8 2E-20 6.9E-25 170.8 13.8 111 141-288 43-153 (244)
73 4g8k_A 2-5A-dependent ribonucl 99.8 8.9E-20 3E-24 173.4 18.8 152 134-294 116-288 (337)
74 3t8k_A Uncharacterized protein 99.8 4E-21 1.4E-25 168.8 8.4 123 143-294 38-169 (186)
75 3kea_A K1L; tropism, ANK repea 99.8 7.3E-21 2.5E-25 177.6 8.9 142 139-294 27-176 (285)
76 1dcq_A PYK2-associated protein 99.8 1.2E-19 4.3E-24 169.2 16.2 119 140-294 127-253 (278)
77 3v30_A DNA-binding protein rfx 99.8 1.6E-20 5.4E-25 161.2 8.0 132 140-282 33-171 (172)
78 4hbd_A KN motif and ankyrin re 99.8 6.1E-20 2.1E-24 170.7 12.1 169 146-333 79-260 (276)
79 2b0o_E UPLC1; arfgap, structur 99.8 1.4E-19 4.6E-24 170.9 14.6 123 136-294 144-274 (301)
80 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-19 5.7E-24 181.6 14.8 122 136-294 125-255 (497)
81 3jue_A Arfgap with coiled-coil 99.8 4E-19 1.4E-23 172.3 14.1 114 144-294 200-316 (368)
82 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.1E-19 1.1E-23 137.9 10.8 88 145-268 4-91 (93)
83 1ycs_B 53BP2, P53BP2; ankyrin 99.8 8.7E-20 3E-24 165.8 8.7 117 140-294 2-118 (239)
84 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-19 3.7E-24 145.8 6.6 107 140-283 6-112 (115)
85 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.6E-19 2.3E-23 136.1 10.8 83 184-294 1-83 (93)
86 1ihb_A P18-INK4C(INK6), cyclin 99.8 6.5E-19 2.2E-23 149.2 9.8 120 140-271 35-162 (162)
87 3t8k_A Uncharacterized protein 99.8 4.4E-19 1.5E-23 155.7 8.9 146 144-332 7-163 (186)
88 3f6q_A Integrin-linked protein 99.8 6.9E-19 2.4E-23 152.2 10.0 130 139-279 35-171 (179)
89 2rfm_A Putative ankyrin repeat 99.8 1.4E-18 4.7E-23 151.9 11.8 114 179-294 29-149 (192)
90 1sw6_A Regulatory protein SWI6 99.8 2.2E-19 7.4E-24 171.0 7.1 141 145-294 99-298 (327)
91 2y1l_E Darpin-8.4; hydrolase-i 99.8 2.3E-18 7.8E-23 147.6 12.0 118 141-268 45-169 (169)
92 1bi7_B P16INK4A, MTS1, multipl 99.8 5.3E-19 1.8E-23 149.7 7.0 108 141-286 43-151 (156)
93 3twr_A Tankyrase-2; ankyrin re 99.8 2.6E-18 8.9E-23 146.3 9.8 119 139-268 38-163 (165)
94 3c5r_A BARD-1, BRCA1-associate 99.7 7.1E-18 2.4E-22 139.4 11.1 91 174-294 1-91 (137)
95 3v31_A Ankyrin repeat family A 99.7 8.1E-18 2.8E-22 143.5 10.2 120 139-268 32-158 (167)
96 1awc_B Protein (GA binding pro 99.7 1.2E-17 4.2E-22 140.6 11.0 114 141-264 32-152 (153)
97 2vge_A RELA-associated inhibit 99.7 2.5E-19 8.6E-24 162.2 0.2 142 139-294 50-203 (229)
98 1bd8_A P19INK4D CDK4/6 inhibit 99.7 1.1E-17 3.7E-22 140.9 10.2 117 139-267 32-155 (156)
99 2b0o_E UPLC1; arfgap, structur 99.7 2.8E-18 9.6E-23 161.8 6.1 110 140-292 187-299 (301)
100 2aja_A Ankyrin repeat family p 99.7 2.9E-19 9.8E-24 173.8 -2.1 133 144-293 93-239 (376)
101 2zgd_A 3 repeat synthetic anky 99.7 2.6E-17 9E-22 131.3 9.5 86 181-294 20-105 (110)
102 2l6b_A NR1C; ankyrin, consensu 99.7 3.9E-17 1.3E-21 130.7 9.0 87 180-294 4-90 (115)
103 2jab_A H10-2-G3; HER2, darpin, 99.7 1.1E-16 3.9E-21 132.1 11.0 92 141-268 45-136 (136)
104 1d9s_A Cyclin-dependent kinase 99.7 2.3E-17 7.7E-22 136.4 6.3 93 141-271 43-136 (136)
105 3aaa_C Myotrophin, protein V-1 99.7 1.7E-16 5.7E-21 128.7 10.0 85 182-294 4-88 (123)
106 2zgd_A 3 repeat synthetic anky 99.7 3.5E-16 1.2E-20 124.7 11.4 91 138-264 19-109 (110)
107 1n0r_A 4ANK, 4 ankyrin repeats 99.7 2.7E-16 9.3E-21 126.7 10.9 94 141-271 33-126 (126)
108 3lvq_E ARF-GAP with SH3 domain 99.7 2.5E-16 8.5E-21 158.4 12.6 105 140-287 168-275 (497)
109 3deo_A Signal recognition part 99.6 7.4E-17 2.5E-21 140.2 4.4 84 182-294 41-125 (183)
110 1dcq_A PYK2-associated protein 99.6 5.4E-16 1.9E-20 144.4 10.2 96 139-271 165-263 (278)
111 2aja_A Ankyrin repeat family p 99.6 2.6E-17 8.8E-22 160.0 0.9 133 143-294 65-214 (376)
112 3jue_A Arfgap with coiled-coil 99.6 9.8E-16 3.4E-20 148.4 10.8 130 124-289 216-347 (368)
113 3ehr_A Osteoclast-stimulating 99.6 7.3E-16 2.5E-20 137.7 6.0 104 140-280 103-207 (222)
114 3ui2_A Signal recognition part 99.6 5.9E-15 2E-19 134.4 10.3 84 182-294 42-126 (244)
115 3bsu_A Ribonuclease H1, RNAse 98.7 6.5E-09 2.2E-13 71.2 3.5 48 35-94 3-50 (53)
116 1qhk_A RNAse HI, protein (ribo 98.7 4.2E-09 1.4E-13 70.3 1.9 46 36-93 2-47 (47)
117 3mkq_B Coatomer subunit alpha; 24.8 2.8E+02 0.0096 22.9 7.9 108 142-268 7-116 (177)
118 3zrh_A Ubiquitin thioesterase 22.7 1.9E+02 0.0063 27.7 6.9 63 192-267 29-91 (454)
119 3zrh_A Ubiquitin thioesterase 21.7 1.1E+02 0.0039 29.1 5.2 52 149-208 28-92 (454)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=3.1e-26 Score=198.50 Aligned_cols=139 Identities=23% Similarity=0.242 Sum_probs=127.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcccccc
Q psy4222 145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNLLYD 219 (367)
Q Consensus 145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~~~~ 219 (367)
++|+.||+.|+++.| ++|++.|+++ +.+|..|+||||+|+..++.+++++|++.+++. ....+++.
T Consensus 6 ~~L~~Aa~~G~~~~v--------~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~ 76 (169)
T 4gpm_A 6 KRLIEAAENGNKDRV--------KDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH 76 (169)
T ss_dssp HHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHHcCCHHHH--------HHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHH
Confidence 479999999999999 9999999999 688999999999999999999999999999864 34566777
Q ss_pred cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 220 SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++..++.+++++|++.|++++ |. .|+||||+||..|+.++|++|+++| ++++.+|.+|+||||+|+..|+.+.
T Consensus 77 A~~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~i 151 (169)
T 4gpm_A 77 AAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEV 151 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHH
Confidence 888899999999999987665 66 8999999999999999999999999 9999999999999999999998764
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=202.03 Aligned_cols=152 Identities=22% Similarity=0.151 Sum_probs=127.3
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCC----------------------------------hhHHhcCCCccccCCCCC
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNP----------------------------------RYLVSSGDFPTILHEGCR 185 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p----------------------------------~~Ll~~g~~~~~~~d~~G 185 (367)
+..++++|+.||..|+++.|+.++.... ++|+..|+++ +.+|..|
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G 86 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDG 86 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTS
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCC
Confidence 3456789999999999999988874321 3466788888 6789999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhhcCCCC-----CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCH
Q psy4222 186 YNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSV 258 (367)
Q Consensus 186 ~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~ 258 (367)
+||||+||..|+.+++++||+.+++.. ...+++.+...++.+++++|++.|+++. |. .|+||||+||..|+.
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~-~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL-SGNTPLIYACSGGHH 165 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCG
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCCH
Confidence 999999999999999999999998643 3455666677888999999999987665 56 899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 259 ECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 259 ~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++|++||++| ++++.+|..|+||||+|+..|+.+.
T Consensus 166 ~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~ 200 (269)
T 4b93_B 166 ELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFV 200 (269)
T ss_dssp GGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHH
Confidence 9999999999 9999999999999999999999874
No 3
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=3.7e-24 Score=184.04 Aligned_cols=145 Identities=25% Similarity=0.228 Sum_probs=128.6
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CC
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AF 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~ 213 (367)
+.....++|++||+.|+.+.| ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++. ..
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 80 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEV--------RILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCcccchHHHHHHcCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence 345567899999999999999 9999999888 578889999999999999999999999998764 34
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
..+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..++
T Consensus 81 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCC
Confidence 566777788899999999999987665 55 8999999999999999999999999 9999999999999999999998
Q ss_pred HHH
Q psy4222 292 LEN 294 (367)
Q Consensus 292 ~~~ 294 (367)
.+.
T Consensus 159 ~~~ 161 (169)
T 2y1l_E 159 EDL 161 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 4
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.91 E-value=4.7e-24 Score=191.89 Aligned_cols=143 Identities=20% Similarity=0.081 Sum_probs=127.5
Q ss_pred hHHHHHHHHHcCCHHHHHHHHhcCChhHHhc-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC----------
Q psy4222 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP---------- 211 (367)
Q Consensus 143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~-g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~---------- 211 (367)
+.|+||.||..|+.+.| ++|++. |.++ +.+|..|+||||+|+..|+.+++++|++.+++.
T Consensus 3 g~t~L~~A~~~g~~~~v--------~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 73 (232)
T 2rfa_A 3 WESPLLLAAKENDVQAL--------SKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY 73 (232)
T ss_dssp TTCHHHHHHHTTCHHHH--------HHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT
T ss_pred CCCHHHHHHHcCCHHHH--------HHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC
Confidence 35799999999999999 888877 7777 678999999999999999999999999998753
Q ss_pred CCcccccccCCCChHHHHHHHHhcCCCCCCCC--------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q psy4222 212 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKA--------------LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK 277 (367)
Q Consensus 212 ~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~--------------~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~ 277 (367)
....+++.++..++.+++++|++.|+++.... .|+||||+|+..|+.++|++|+++| ++++.+|.
T Consensus 74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~ 152 (232)
T 2rfa_A 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDS 152 (232)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCT
T ss_pred CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCC
Confidence 45667777888899999999999998776432 5999999999999999999999999 99999999
Q ss_pred CCChHHHHHhcCCcHHHH
Q psy4222 278 EGKTPLDSSSGLDLLENY 295 (367)
Q Consensus 278 ~G~TPL~iA~~~g~~~~l 295 (367)
.|+||||+|+..++.+..
T Consensus 153 ~g~t~L~~A~~~~~~~~~ 170 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFA 170 (232)
T ss_dssp TSCCHHHHHHTCSCHHHH
T ss_pred CCCCHHHHHHHcCChHHH
Confidence 999999999999988743
No 5
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.91 E-value=8.9e-25 Score=203.05 Aligned_cols=151 Identities=17% Similarity=0.105 Sum_probs=134.7
Q ss_pred CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC---
Q psy4222 136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA--- 212 (367)
Q Consensus 136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~--- 212 (367)
....+..+.||||+||..|+.++| ++|+..|+++ ..++..|.||||+|+..++.+++++|++.+++.+
T Consensus 79 vn~~d~~G~TpLh~A~~~g~~~~v--------~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d 149 (269)
T 4b93_B 79 VNVTSQDGSSPLHVAALHGRADLI--------PLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149 (269)
T ss_dssp TTCCCTTSCCHHHHHHHTTCTTHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHH--------HHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC
Confidence 344556778999999999999999 9999999988 5788899999999999999999999999998643
Q ss_pred --CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222 213 --FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG 288 (367)
Q Consensus 213 --~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~ 288 (367)
...+++.++..++.+++++|++.|++++ +. .|+||||+||..|+.++|++||++| +|++++|.+|+||||+|++
T Consensus 150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNN-KGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp TTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc-CCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHh
Confidence 4556777788899999999999997766 55 8999999999999999999999999 9999999999999999999
Q ss_pred CCcHHHHHh
Q psy4222 289 LDLLENYLH 297 (367)
Q Consensus 289 ~g~~~~ll~ 297 (367)
.+++.++|+
T Consensus 228 ~~~i~~lL~ 236 (269)
T 4b93_B 228 NSKIMELLQ 236 (269)
T ss_dssp TCHHHHHTT
T ss_pred CCcHHHHHH
Confidence 998766654
No 6
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.91 E-value=6.3e-24 Score=182.61 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=125.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cccccc
Q psy4222 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLY 218 (367)
Q Consensus 144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~ 218 (367)
.++||.||..|+.+.+ ++|+..+....+.++..|+||||+|+..|+.+++++|++.+++.+ ...+++
T Consensus 3 ~~~L~~A~~~g~~~~v--------~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 74 (172)
T 3v30_A 3 SLSIHQLAAQGELDQL--------KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS 74 (172)
T ss_dssp -CCHHHHHHTTCHHHH--------HHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred hhhHHHHHHcCCHHHH--------HHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHH
Confidence 4689999999999999 777777766556778999999999999999999999999998643 456677
Q ss_pred ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 219 DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 219 ~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
.++..++.+++++|++.|+++. +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 75 LASTGGYTDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp HHHHTTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHH
Confidence 7788899999999999986665 55 8999999999999999999999999 9999999999999999999988764
No 7
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.90 E-value=1.4e-23 Score=177.37 Aligned_cols=139 Identities=22% Similarity=0.158 Sum_probs=124.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cccccc
Q psy4222 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLY 218 (367)
Q Consensus 144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~ 218 (367)
-++|+.|+..|+.+.| ++|++.|.+. ..+..|+||||+|+..|+.+++++|++.+++.+ ...+++
T Consensus 3 ~~~L~~A~~~g~~~~v--------~~Ll~~g~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 72 (153)
T 1awc_B 3 GKKLLEAARAGQDDEV--------RILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH 72 (153)
T ss_dssp HHHHHHHHHHTCHHHH--------HHHHHHTCCC--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred cHHHHHHHHcCCHHHH--------HHHHHcCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 4789999999999999 8888888765 357889999999999999999999999987643 455677
Q ss_pred ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 219 DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 219 ~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 73 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i 148 (153)
T 1awc_B 73 MAASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDL 148 (153)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHH
Confidence 7778899999999999987665 55 8999999999999999999999999 9999999999999999999998774
No 8
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.90 E-value=5.5e-24 Score=186.45 Aligned_cols=145 Identities=26% Similarity=0.123 Sum_probs=129.4
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CC
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AF 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~ 213 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++. ..
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 101 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAI--------DKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGH--------HHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHcCCHHHH--------HHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence 445667999999999999999 8888888877 577888999999999999999999999998764 34
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
..+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGR 179 (192)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTC
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCc
Confidence 566777778899999999999987665 55 8999999999999999999999999 9999999999999999999998
Q ss_pred HHH
Q psy4222 292 LEN 294 (367)
Q Consensus 292 ~~~ 294 (367)
.+.
T Consensus 180 ~~~ 182 (192)
T 2rfm_A 180 QEV 182 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 9
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.90 E-value=4.7e-24 Score=195.11 Aligned_cols=146 Identities=17% Similarity=0.096 Sum_probs=128.5
Q ss_pred hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccc---cCCCCCCcHHHHHHHc---CCHHHHHHHHhhcCCC-----
Q psy4222 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI---LHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNP----- 211 (367)
Q Consensus 143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~---~~d~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d~----- 211 (367)
+.|+||.||..|+.+.|+.++ ++|++.|.++.. .+|..|+||||+|+.. |+.+++++|++.+++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll----~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 77 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLL----EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP 77 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHH----HHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred CccHHHHHHHcCCHHHHHHHH----HHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh
Confidence 468999999999999998888 899999988842 2788999999999999 9999999999998643
Q ss_pred -----------CCcccccccCCCChHHHHHHHHhcCCCCCCCC-C-------------CCcHHHHHHHcCCHHHHHHHHh
Q psy4222 212 -----------AFTNLLYDSDTPSYIERSDILLDLYVNTPDKA-L-------------NETPLHFAAKFGSVECVKRLIG 266 (367)
Q Consensus 212 -----------~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~-~-------------g~TpLH~Aa~~g~~~vv~~LL~ 266 (367)
....+++.++..++.+++++|++.|+++.... . |+||||+||..|+.++|++|++
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 35677788888999999999999997776432 3 9999999999999999999999
Q ss_pred ---CCCCCCCCCCCCCChHHHHHhc--CCcHH
Q psy4222 267 ---CAKIQTSVRNKEGKTPLDSSSG--LDLLE 293 (367)
Q Consensus 267 ---~g~ad~~~~n~~G~TPL~iA~~--~g~~~ 293 (367)
+| ++++.+|..|+||||+|+. .++.+
T Consensus 158 ~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~ 188 (256)
T 2etb_A 158 NPHQP-ASLEATDSLGNTVLHALVMIADNSPE 188 (256)
T ss_dssp CSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred ccccC-CCcCccCCCCCCHHHHHHHcccCCch
Confidence 88 9999999999999999997 67655
No 10
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.90 E-value=1.2e-23 Score=193.87 Aligned_cols=145 Identities=16% Similarity=0.076 Sum_probs=93.4
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCc--cccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC----
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA---- 212 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~--~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~---- 212 (367)
.+..+.|+||+||..|+.+.| ++|++.|+++ .+.++..|+||||+|+..|+.+++++|++.|++..
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 76 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFL--------DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHH--------HHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT
T ss_pred cCCCCCcHHHHHHHcCCHHHH--------HHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 345566788888888888888 6666666552 24556677777777777777777777777776532
Q ss_pred -CcccccccCCCChHHHHHHHHhcCC-------------------------------------------------CCCCC
Q psy4222 213 -FTNLLYDSDTPSYIERSDILLDLYV-------------------------------------------------NTPDK 242 (367)
Q Consensus 213 -~~~~~~~~~~~~~~~~v~~Ll~~~~-------------------------------------------------n~~d~ 242 (367)
...+++.++..++.+++++|++.+. +..+.
T Consensus 77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 1oy3_D 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156 (282)
T ss_dssp TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence 3344555556666666666665542 22333
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CChHHHHHhcCCcHH
Q psy4222 243 ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKE-GKTPLDSSSGLDLLE 293 (367)
Q Consensus 243 ~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~-G~TPL~iA~~~g~~~ 293 (367)
.|+||||+|+..|+.++|++|+++| ++++.++.. |+||||+|+..|+.+
T Consensus 157 -~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~ 206 (282)
T 1oy3_D 157 -DGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAAS 206 (282)
T ss_dssp -TSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred -CCcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHH
Confidence 5666666666666666666666666 666666643 666666666666654
No 11
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=8.5e-24 Score=180.91 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=125.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cccccc
Q psy4222 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLY 218 (367)
Q Consensus 144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~ 218 (367)
.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.. ...+++
T Consensus 4 ~t~L~~A~~~g~~~~v--------~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 74 (167)
T 3v31_A 4 SLSVHQLAAQGEMLYL--------ATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALS 74 (167)
T ss_dssp CCCHHHHHHTTCHHHH--------HHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cchHHHHHHCCCHHHH--------HHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 3689999999999999 8888888776 6778899999999999999999999999988643 345677
Q ss_pred ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 219 DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 219 ~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~ 150 (167)
T 3v31_A 75 LACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSV 150 (167)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 7778899999999999986665 55 8999999999999999999999999 9999999999999999999888774
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=191.82 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=123.5
Q ss_pred hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccccc
Q psy4222 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLL 217 (367)
Q Consensus 143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~ 217 (367)
+.|+||.||..|+.+.| ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.+ ...++
T Consensus 3 g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 73 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSL--------RNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL 73 (261)
T ss_dssp -CCHHHHHHHHTCHHHH--------HHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence 45899999999999999 8888888887 6778889999999999999999999999987643 45566
Q ss_pred cccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 218 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 218 ~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+.++..++.+++++|++.|++......|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~ 149 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRAC 149 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHhCCHHH
Confidence 777778899999999999988875547999999999999999999999999 8999999999999999999888764
No 13
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=6.1e-23 Score=170.17 Aligned_cols=119 Identities=27% Similarity=0.272 Sum_probs=108.0
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY 218 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~ 218 (367)
+.....|+||+||..|+.+.| ++|++.|.++ +.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------- 72 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEV--------RILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-------- 72 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--------
T ss_pred ccccccHHHHHHHHhCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence 446678999999999999999 8999999888 67889999999999999999999999998866
Q ss_pred ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++..+. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus 73 ------------------~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~ 128 (136)
T 2jab_A 73 ------------------VNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDL 128 (136)
T ss_dssp ------------------TTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred ------------------CCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHH
Confidence 556667 8999999999999999999999999 9999999999999999999998764
No 14
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.90 E-value=4.2e-23 Score=181.35 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=126.5
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C-----CC
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N-----PA 212 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d-----~~ 212 (367)
.+..+.|+||.|+..|+.+.| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+. + ..
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 105 (201)
T 3hra_A 35 VDTEGNTPLNIAVHNNDIEIA--------KALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105 (201)
T ss_dssp CCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT
T ss_pred CCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCC
Confidence 344567899999999999999 9999999988 5788899999999999999999999996544 2 33
Q ss_pred CcccccccCCCChHHHHHHHHhcC-CC--CCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCCCCCCCCCCCCChHHH
Q psy4222 213 FTNLLYDSDTPSYIERSDILLDLY-VN--TPDKALNETPLHFAAKFGS-----VECVKRLIGCAKIQTSVRNKEGKTPLD 284 (367)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~Ll~~~-~n--~~d~~~g~TpLH~Aa~~g~-----~~vv~~LL~~g~ad~~~~n~~G~TPL~ 284 (367)
...+++.++..++.+++++|++.+ .+ ..+. .|+||||+|+..|+ .+++++|+++| ++++.+|..|+||||
T Consensus 106 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~ 183 (201)
T 3hra_A 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIKDNSGRTAMD 183 (201)
T ss_dssp SCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT-TSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCCCHHHHHHHhccchhhHHHHHHHHHHCC-CCCCccCCCCCCHHH
Confidence 456677778889999999999988 44 4466 89999999999998 99999999999 999999999999999
Q ss_pred HHhcCCcHHH
Q psy4222 285 SSSGLDLLEN 294 (367)
Q Consensus 285 iA~~~g~~~~ 294 (367)
+|+..|+.+.
T Consensus 184 ~A~~~~~~~~ 193 (201)
T 3hra_A 184 YANQKGYTEI 193 (201)
T ss_dssp HHHHHTCHHH
T ss_pred HHHHcCCHhH
Confidence 9999988774
No 15
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.90 E-value=1.9e-23 Score=177.40 Aligned_cols=140 Identities=24% Similarity=0.268 Sum_probs=125.0
Q ss_pred hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccccc
Q psy4222 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLL 217 (367)
Q Consensus 143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~ 217 (367)
..++||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+. |+.+++++|++.+++.+ ...++
T Consensus 5 ~~~~L~~A~~~g~~~~v--------~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L 74 (162)
T 1ihb_A 5 WGNELASAAARGDLEQL--------TSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVI 74 (162)
T ss_dssp CHHHHHHHHHHTCHHHH--------HHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred HhhHHHHHHHcCCHHHH--------HHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 35899999999999999 8888889888 6778999999999999 99999999999987643 45667
Q ss_pred cccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCChHHHHHhcCCcHHH
Q psy4222 218 YDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQ-TSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 218 ~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad-~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++| ++ ++.+|..|+||||+|+..|+.+.
T Consensus 75 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~ 152 (162)
T 1ihb_A 75 HDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEV 152 (162)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 77778899999999999987665 56 8999999999999999999999999 66 69999999999999999998774
No 16
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.90 E-value=3e-23 Score=177.13 Aligned_cols=143 Identities=22% Similarity=0.211 Sum_probs=122.7
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT 214 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~ 214 (367)
+.+..++||.|++.|+.+.| ++|++.+.......+..|+||||+|+..|+.+++++|++.+++. ...
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v--------~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 76 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETV--------KKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL 76 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHH--------HHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred cchhhHHHHHHHHhCCHHHH--------HHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCC
Confidence 35677999999999999999 66666544443566788999999999999999999999998764 345
Q ss_pred ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222 215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL 292 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~ 292 (367)
.+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+. ++.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~ 153 (165)
T 3twr_A 77 VPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDT 153 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCH
T ss_pred CHHHHHHHcCcHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CCh
Confidence 66777788899999999999987665 55 8999999999999999999999999 9999999999999999876 655
Q ss_pred H
Q psy4222 293 E 293 (367)
Q Consensus 293 ~ 293 (367)
+
T Consensus 154 ~ 154 (165)
T 3twr_A 154 D 154 (165)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.89 E-value=3.7e-23 Score=189.26 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C-----CCCc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N-----PAFT 214 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d-----~~~~ 214 (367)
..+.|+||+|+..|+.+.| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.++ + ....
T Consensus 55 ~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 125 (253)
T 1yyh_A 55 RTGETALHLAARYSRSDAA--------KRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125 (253)
T ss_dssp TTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCC
T ss_pred CCCCcHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCC
Confidence 4456788888888888888 7777888777 5677778888888888888888888888765 2 3344
Q ss_pred ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222 215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL 292 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~ 292 (367)
.+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.
T Consensus 126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~ 203 (253)
T 1yyh_A 126 TPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSY 203 (253)
T ss_dssp CHHHHHHHHTCSSHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCH
Confidence 55666666677788888888876655 44 7888888888888888888888888 88888888888888888887776
Q ss_pred HH
Q psy4222 293 EN 294 (367)
Q Consensus 293 ~~ 294 (367)
+.
T Consensus 204 ~~ 205 (253)
T 1yyh_A 204 ET 205 (253)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 18
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.89 E-value=2e-23 Score=188.63 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=132.2
Q ss_pred CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC-----
Q psy4222 136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN----- 210 (367)
Q Consensus 136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d----- 210 (367)
+...+..+.|+||.|+..|+.++| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++
T Consensus 38 ~~~~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 108 (236)
T 1ikn_D 38 LNFQNNLQQTPLHLAVITNQPEIA--------EALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108 (236)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHH--------HCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC
T ss_pred hhccCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHH
Confidence 444556678999999999999999 9999999998 67889999999999999999999999998764
Q ss_pred ------CCCcccccccCCCChHHHHHHHHhcCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChH
Q psy4222 211 ------PAFTNLLYDSDTPSYIERSDILLDLYVNTPDK--ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282 (367)
Q Consensus 211 ------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~--~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TP 282 (367)
.....+++.++..++.+++++|++.|+++... ..|+||||+|+..|+.++|++|+++| ++++.+|..|+||
T Consensus 109 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tp 187 (236)
T 1ikn_D 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSP 187 (236)
T ss_dssp GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCG
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCH
Confidence 23556677777889999999999999877643 37999999999999999999999999 9999999999999
Q ss_pred HHHHhcCCcHHH
Q psy4222 283 LDSSSGLDLLEN 294 (367)
Q Consensus 283 L~iA~~~g~~~~ 294 (367)
||+|+..++.+.
T Consensus 188 l~~A~~~~~~~~ 199 (236)
T 1ikn_D 188 YQLTWGRPSTRI 199 (236)
T ss_dssp GGGCTTSSCHHH
T ss_pred HHHHHccCchHH
Confidence 999999998774
No 19
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.89 E-value=2.4e-23 Score=191.83 Aligned_cols=145 Identities=19% Similarity=0.117 Sum_probs=127.4
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC---------
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN--------- 210 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d--------- 210 (367)
+..+.|+||+|+..|+.++| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v--------~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 112 (282)
T 1oy3_D 42 NDLGQTALHLAAILGEASTV--------EKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112 (282)
T ss_dssp CTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----
T ss_pred CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH
Confidence 34567999999999999999 9999999998 57889999999999999999999999997643
Q ss_pred -------------------------------------------CCCcccccccCCCChHHHHHHHHhcCCCCCCC--CCC
Q psy4222 211 -------------------------------------------PAFTNLLYDSDTPSYIERSDILLDLYVNTPDK--ALN 245 (367)
Q Consensus 211 -------------------------------------------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~--~~g 245 (367)
.....+++.++..++.+++++|++.|+++... ..|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g 192 (282)
T 1oy3_D 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192 (282)
T ss_dssp -------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred hhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 12345566667788999999999999777643 259
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 246 ~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus 193 ~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 193 RTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred cCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHH
Confidence 99999999999999999999999 9999999999999999999998774
No 20
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.89 E-value=5.3e-23 Score=183.63 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=121.2
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C-----CCC
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N-----PAF 213 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d-----~~~ 213 (367)
+..+.|+||.|+..|+.+.| ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.++ + ...
T Consensus 22 d~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 92 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAA--------KRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 92 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTC
T ss_pred CCCCCchHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 45667899999999999999 8888888887 5778889999999999999999999998876 2 334
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
..+++.++..++.+++++|++.++++. +. .|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+
T Consensus 93 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~ 170 (223)
T 2f8y_A 93 TTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGS 170 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTC
T ss_pred CcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHHHcCC
Confidence 556666777888899999999886665 55 7899999999999999999999998 8999999999999999998888
Q ss_pred HHH
Q psy4222 292 LEN 294 (367)
Q Consensus 292 ~~~ 294 (367)
.+.
T Consensus 171 ~~~ 173 (223)
T 2f8y_A 171 YET 173 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.89 E-value=8.6e-23 Score=184.00 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=114.2
Q ss_pred CCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC---
Q psy4222 135 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP--- 211 (367)
Q Consensus 135 ~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~--- 211 (367)
+|+..+..+.|+||.||..|+.+.+ ++|++.|.++ +..+..|+||||+|+..|+.+++++|++.+++.
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 73 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDIC--------HMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC
T ss_pred CcccccCCCCCHHHHHHHcCcHHHH--------HHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC
Confidence 4555566677888888888888888 7888888777 566777888888888888888888888887653
Q ss_pred --CCcccccccCCCChHHHHHHHHhcC-CCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222 212 --AFTNLLYDSDTPSYIERSDILLDLY-VNT--PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286 (367)
Q Consensus 212 --~~~~~~~~~~~~~~~~~v~~Ll~~~-~n~--~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA 286 (367)
....+++.+...++.+++++|++.+ .+. .+. .|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|
T Consensus 74 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A 151 (237)
T 3b7b_A 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWA 151 (237)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHH
Confidence 2344566666777888888888776 333 355 7888888888888888888888888 78888888888888888
Q ss_pred hcCCcHHH
Q psy4222 287 SGLDLLEN 294 (367)
Q Consensus 287 ~~~g~~~~ 294 (367)
+..|+.+.
T Consensus 152 ~~~~~~~~ 159 (237)
T 3b7b_A 152 AFSGCVDI 159 (237)
T ss_dssp HHHCCHHH
T ss_pred HHCCCHHH
Confidence 87777653
No 22
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.89 E-value=7.1e-23 Score=191.21 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=130.0
Q ss_pred CCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC----
Q psy4222 137 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA---- 212 (367)
Q Consensus 137 ~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~---- 212 (367)
...+..+.|+||.||..|+.+.| ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.+
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 123 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSL--------RNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHH--------HHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT
T ss_pred cCCCccCCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence 34556677999999999999999 8888889887 5788899999999999999999999999987643
Q ss_pred -CcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 213 -FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 213 -~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
...+++.++..++.+++++|++.+++......|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+
T Consensus 124 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~ 202 (285)
T 3d9h_A 124 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQ 202 (285)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCc
Confidence 45667777788899999999999988875447999999999999999999999999 8999999999999999999998
Q ss_pred HHH
Q psy4222 292 LEN 294 (367)
Q Consensus 292 ~~~ 294 (367)
.+.
T Consensus 203 ~~~ 205 (285)
T 3d9h_A 203 RAC 205 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 23
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.89 E-value=3.6e-23 Score=199.02 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=123.2
Q ss_pred CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC---CCc
Q psy4222 138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP---AFT 214 (367)
Q Consensus 138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~---~~~ 214 (367)
..+..+.|+||+||..|+++.| ++|++.|+++ +.+|..|+||||+||..|+.+++++|++.+++. ...
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v--------~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~ 85 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEV--------RRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ 85 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTB
T ss_pred ccCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCC
Confidence 3567889999999999999999 8999999888 688999999999999999999999999999854 345
Q ss_pred ccccccCCCChHHHHHHHHhc----CCCC-------------------CCCCCCCcHHHHHHHcC--CHHHHHHHHhCCC
Q psy4222 215 NLLYDSDTPSYIERSDILLDL----YVNT-------------------PDKALNETPLHFAAKFG--SVECVKRLIGCAK 269 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~----~~n~-------------------~d~~~g~TpLH~Aa~~g--~~~vv~~LL~~g~ 269 (367)
.+++.++..++.+++++|++. +.+. .+. .|+||||+|+..| +.++|++|+++|
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~g- 163 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLG- 163 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHT-
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcC-
Confidence 667777778888888888887 4333 334 6888888888888 888888888888
Q ss_pred CCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 270 IQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 270 ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++++.+|..|+||||+|+..|+.+.
T Consensus 164 a~~~~~d~~g~t~L~~A~~~g~~~~ 188 (364)
T 3ljn_A 164 ASPTAKDKADETPLMRAMEFRNREA 188 (364)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHH
Confidence 8888888888888888888888764
No 24
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.89 E-value=2.1e-23 Score=180.85 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN 215 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~ 215 (367)
++.+++||.||..|+.+.| ++|++.+....+..+..|+||||+|+..|+.+++++|++.+++.+ ...
T Consensus 3 ~~~~~~l~~A~~~g~~~~v--------~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 74 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAV--------RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 74 (179)
T ss_dssp ----CCHHHHHHHTCHHHH--------HHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred HHHHHHHHHHHHcCCHHHH--------HHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence 4567799999999999999 777777544436788999999999999999999999999998644 456
Q ss_pred cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222 216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE 293 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~ 293 (367)
+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~ 152 (179)
T 3f6q_A 75 PLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLREL 152 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHH
Confidence 6777788899999999999987665 55 8999999999999999999999999 999999999999999998766544
No 25
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.89 E-value=6e-23 Score=184.60 Aligned_cols=146 Identities=16% Similarity=0.037 Sum_probs=125.6
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc----ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC--
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT----ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-- 212 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~----~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-- 212 (367)
.+..+.|+||.|+..|+.+++ ++|++.|+++. ...|..|+||||+|+..|+.+++++|++.+++..
T Consensus 33 ~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 104 (232)
T 2rfa_A 33 RGAMGETALHIAALYDNLEAA--------MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR 104 (232)
T ss_dssp CCTTSCCHHHHHHHTTCHHHH--------HHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCCHHHHHHHcCCHHHH--------HHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcc
Confidence 445667999999999999999 77777776542 3456789999999999999999999999998643
Q ss_pred ----------------CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHH----HHHHhCCCC
Q psy4222 213 ----------------FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECV----KRLIGCAKI 270 (367)
Q Consensus 213 ----------------~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv----~~LL~~g~a 270 (367)
...+++.++..++.+++++|++.|+++. |. .|+||||+|+..|+.+++ ++|+++| +
T Consensus 105 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~ 182 (232)
T 2rfa_A 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS-LGNTVLHILILQPNKTFACQMYNLLLSYD-G 182 (232)
T ss_dssp CCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHTCSCHHHHHHHHHHHHHTT-C
T ss_pred cCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCChHHHHHHHHHHHhcC-C
Confidence 4456677777899999999999987665 66 899999999999999988 9999999 7
Q ss_pred CC------CCCCCCCChHHHHHhcCCcHHH
Q psy4222 271 QT------SVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 271 d~------~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+. +.+|..|+||||+|+..|+.+.
T Consensus 183 ~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~ 212 (232)
T 2rfa_A 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212 (232)
T ss_dssp SCSSCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred chhhhhhhccCCCCCCCHHHHHHHcCCHHH
Confidence 87 6899999999999999998874
No 26
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=9.3e-23 Score=165.98 Aligned_cols=114 Identities=25% Similarity=0.309 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS 220 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~ 220 (367)
....++||+|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++
T Consensus 5 ~~~~~~l~~A~~~~~~~~v--------~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 65 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEV--------KDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---------- 65 (123)
T ss_dssp --CHHHHHHHHHTTCHHHH--------HHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC----------
T ss_pred cccchHHHHHHHcCCHHHH--------HHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence 3456899999999999999 8888889887 67888999999999999999999999998866
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
++..|. .|+||||+|+..|+.++|++|+++| ++++.+|.+|+||||+|+..+.
T Consensus 66 ----------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 66 ----------------INAPDK-HHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp ----------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCHHH
T ss_pred ----------------CCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCHHH
Confidence 566677 8999999999999999999999999 9999999999999999965443
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.89 E-value=2.1e-22 Score=180.79 Aligned_cols=145 Identities=21% Similarity=0.212 Sum_probs=129.5
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||.|+..|+.+.| ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.. .
T Consensus 36 ~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 106 (231)
T 3aji_A 36 TDQDSRTALHWACSAGHTEIV--------EFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCCCCHHHHHHHcCcHHHH--------HHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCC
Confidence 345567899999999999999 8999999888 5788899999999999999999999999988643 4
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
..+++.+...++.+++++|++.|+++. +. .|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++
T Consensus 107 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~ 184 (231)
T 3aji_A 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEER 184 (231)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCC
Confidence 556777778899999999999987665 55 8999999999999999999999999 9999999999999999999998
Q ss_pred HHH
Q psy4222 292 LEN 294 (367)
Q Consensus 292 ~~~ 294 (367)
.+.
T Consensus 185 ~~~ 187 (231)
T 3aji_A 185 VEE 187 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.89 E-value=1.1e-22 Score=181.98 Aligned_cols=201 Identities=14% Similarity=0.045 Sum_probs=142.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC--------CCCcc
Q psy4222 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN--------PAFTN 215 (367)
Q Consensus 144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d--------~~~~~ 215 (367)
.|+||.||..|+.+.| ++|++.|.+.....+..|+||||+|+..|+.+++++|++.+++ .....
T Consensus 3 ~t~L~~A~~~g~~~~v--------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t 74 (228)
T 2dzn_A 3 NYPLHQACMENEFFKV--------QELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT 74 (228)
T ss_dssp CCHHHHHHHTTCHHHH--------HHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCC
T ss_pred ccHHHHHHHhCCHHHH--------HHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCC
Confidence 3689999999999999 7777777666555788899999999999999999999999833 33455
Q ss_pred cccccCCCChHHHHHHHHhcC--CCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 216 LLYDSDTPSYIERSDILLDLY--VNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~~~--~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
+++.++..++.+++++|++.| .+.. +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+
T Consensus 75 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~ 152 (228)
T 2dzn_A 75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGS 152 (228)
T ss_dssp HHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCC
Confidence 667777788899999999887 5444 55 7999999999999999999999998 8999999999999999998888
Q ss_pred HHHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhccCCCC--ccccc-CCCCCCCCCCCcccccccceecc
Q psy4222 292 LENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDT--LSLSS-HSNGSPESNSSSVTSMSHLLIEK 364 (367)
Q Consensus 292 ~~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~--~sl~s-~~~~s~~s~~s~~~s~~~~~~~~ 364 (367)
.+.+- .++... ...++.......+|++..+..... ..+-- ..+..+...+....+..|+.+++
T Consensus 153 ~~~v~-----~Ll~~g-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 153 LKLIE-----LLCGLG-----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHH-----HHHTTT-----CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HHHHH-----HHHhcC-----cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 76431 111111 012233344556677766553322 22222 22334444444455555655543
No 29
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.89 E-value=1.8e-22 Score=181.94 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=93.8
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FT 214 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~ 214 (367)
+..+.|+||.||..|+.+.|+.++ +++...|.++ +.++..|+||||+|+..|+.+++++|++.+++.. ..
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHH----HHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHH----HHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence 445567777777777777775555 4444456555 4556667777777777777777777777766532 23
Q ss_pred ccccccCCCChHHHHHHHHhcCC------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCChHHHHHh
Q psy4222 215 NLLYDSDTPSYIERSDILLDLYV------NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDSSS 287 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~~~------n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n-~~G~TPL~iA~ 287 (367)
.+++.++..++.+++++|++.+. +..+. .|+||||+|+..|+.+++++|+++| ++++.++ ..|.||||+|+
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHH
Confidence 44555555666667777766643 22344 6667777777777777777777776 6666666 56777777777
Q ss_pred cCCcHH
Q psy4222 288 GLDLLE 293 (367)
Q Consensus 288 ~~g~~~ 293 (367)
..|+.+
T Consensus 159 ~~~~~~ 164 (241)
T 1k1a_A 159 ENNSLS 164 (241)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 666655
No 30
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.89 E-value=8.1e-23 Score=187.01 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=130.7
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|....+..+..|+||||+|+..|+.+++++|++.+++.+ .
T Consensus 86 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 157 (253)
T 1yyh_A 86 QDNMGRTPLHAAVSADAQGVF--------QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157 (253)
T ss_dssp CCTTSCCHHHHHHHHTCHHHH--------HHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred CCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence 445667999999999999999 888888874446788999999999999999999999999988643 5
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
..+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+
T Consensus 158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMH 235 (253)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCC
Confidence 566777788899999999999987665 55 8999999999999999999999999 9999999999999999999999
Q ss_pred HHHH
Q psy4222 292 LENY 295 (367)
Q Consensus 292 ~~~l 295 (367)
.+.+
T Consensus 236 ~~i~ 239 (253)
T 1yyh_A 236 HDIV 239 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 31
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.88 E-value=3.7e-22 Score=179.90 Aligned_cols=146 Identities=20% Similarity=0.197 Sum_probs=129.1
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC----C----
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG----N---- 210 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~----d---- 210 (367)
.+..+.|+||.|+..|+.+++ ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.++ +
T Consensus 42 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 112 (241)
T 1k1a_A 42 YNNLRQTPLHLAVITTLPSVV--------RLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112 (241)
T ss_dssp CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC
T ss_pred ccccCCCHHHHHHHcCCHHHH--------HHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc
Confidence 445567899999999999999 9999999888 5778899999999999999999999999986 2
Q ss_pred -CCCcccccccCCCChHHHHHHHHhcCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222 211 -PAFTNLLYDSDTPSYIERSDILLDLYVNTPDK--ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS 287 (367)
Q Consensus 211 -~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~--~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~ 287 (367)
.....+++.++..++.+++++|++.|++.... ..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+
T Consensus 113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~ 191 (241)
T 1k1a_A 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSAS 191 (241)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHH
T ss_pred CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence 23455667777788999999999999777632 27999999999999999999999999 999999999999999999
Q ss_pred cCCcHHH
Q psy4222 288 GLDLLEN 294 (367)
Q Consensus 288 ~~g~~~~ 294 (367)
..|+.+.
T Consensus 192 ~~~~~~~ 198 (241)
T 1k1a_A 192 GRGLLPL 198 (241)
T ss_dssp HHTCHHH
T ss_pred HcCCHHH
Confidence 9998774
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.88 E-value=7.4e-23 Score=183.15 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcC--CCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhc--CC-----C
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG--DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEII--GN-----P 211 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g--~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~--~d-----~ 211 (367)
..+.|+||+|+..|+.+.+ ++|++.| .++....+..|+||||+|+..|+.+++++|++.+ .+ .
T Consensus 34 ~~g~t~L~~A~~~~~~~~v--------~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 105 (228)
T 2dzn_A 34 QDGRIPLHWSVSFQAHEIT--------SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN 105 (228)
T ss_dssp TTSCCHHHHHHHTTCHHHH--------HHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT
T ss_pred CCCCCHHHHHHHcCCHHHH--------HHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc
Confidence 3445778888888888777 7777777 4443225677778888888888888888887776 33 2
Q ss_pred CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222 212 AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL 289 (367)
Q Consensus 212 ~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~ 289 (367)
....+++.+...++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++|.++++.+|..|+||||+|+..
T Consensus 106 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~ 184 (228)
T 2dzn_A 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184 (228)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHc
Confidence 23445556666777777887777775554 44 6778888888888888888888777667777777888888888877
Q ss_pred CcHHH
Q psy4222 290 DLLEN 294 (367)
Q Consensus 290 g~~~~ 294 (367)
|+.+.
T Consensus 185 ~~~~~ 189 (228)
T 2dzn_A 185 GHGDA 189 (228)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 77653
No 33
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.88 E-value=9.6e-23 Score=187.54 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=129.0
Q ss_pred CCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC--
Q psy4222 135 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-- 212 (367)
Q Consensus 135 ~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-- 212 (367)
+....+..+.|+||.|+..|+.+++ ++|++.|+++. .+..|.||||+|+..|+.+++++|++.+++.+
T Consensus 61 ~~~~~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 130 (261)
T 2xai_A 61 QVNGVTADWHTPLFNACVSGSWDCV--------NLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 130 (261)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHH--------HHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcC
Confidence 3444456677999999999999999 88888888773 35568999999999999999999999988643
Q ss_pred ---CcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222 213 ---FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL 289 (367)
Q Consensus 213 ---~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~ 289 (367)
...+++.++..++.+++++|++.|++++....|+||||+|+..|+.++|++|+++| ++++.+|.+|+||||+|+..
T Consensus 131 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~A~~~ 209 (261)
T 2xai_A 131 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPE 209 (261)
T ss_dssp BTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTCCBTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSCTT
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCChhhhcccc
Confidence 34667777788999999999999988874448999999999999999999999999 99999999999999999988
Q ss_pred CcHHHHHhh
Q psy4222 290 DLLENYLHT 298 (367)
Q Consensus 290 g~~~~ll~~ 298 (367)
+.+..++..
T Consensus 210 ~~~~~~ll~ 218 (261)
T 2xai_A 210 SPLAQLFLE 218 (261)
T ss_dssp CTHHHHHHH
T ss_pred ccHHHHHHh
Confidence 887766543
No 34
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=6.1e-23 Score=170.18 Aligned_cols=118 Identities=20% Similarity=0.208 Sum_probs=106.0
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY 218 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~ 218 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+. |+.+++++|++.+++
T Consensus 8 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-------- 69 (136)
T 1d9s_A 8 LGGSSDAGLATAAARGQVETV--------RQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-------- 69 (136)
T ss_dssp CCCCCSCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC--------
T ss_pred CCCCCccHHHHHHHcCCHHHH--------HHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC--------
Confidence 445567899999999999999 8888999888 5778899999999999 999999999998876
Q ss_pred ccCCCChHHHHHHHHhcCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 219 DSDTPSYIERSDILLDLYVNTPDKAL-NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~-g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++..+. . |+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus 70 ------------------~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~ 126 (136)
T 1d9s_A 70 ------------------PNCADP-ATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDI 126 (136)
T ss_dssp ------------------SSCCBT-TTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHH
T ss_pred ------------------CCCcCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHH
Confidence 555566 6 999999999999999999999999 9999999999999999999888764
No 35
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.88 E-value=2.2e-22 Score=181.27 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=122.0
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|....+..+..|+||||+|+..|+.+++++|++.+++.. .
T Consensus 73 ~~~~g~t~L~~A~~~~~~~~~--------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 144 (237)
T 3b7b_A 73 KDAEGSTCLHLAAKKGHYEVV--------QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE 144 (237)
T ss_dssp CCTTSCCHHHHHHHTTCHHHH--------HHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCCCcHHHHHHHcCCHHHH--------HHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC
Confidence 345566899999999999999 888888733336778889999999999999999999999887643 3
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
..+++.+...++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++
T Consensus 145 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 145 NICLHWAAFSGCVDIAEILLAAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp CCHHHHHHHHCCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHH
Confidence 455666677788899999999886665 55 7899999999999999999999998 8999999999999999999988
Q ss_pred HHHHHh
Q psy4222 292 LENYLH 297 (367)
Q Consensus 292 ~~~ll~ 297 (367)
+..++.
T Consensus 223 ~~~~~~ 228 (237)
T 3b7b_A 223 VWSALQ 228 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.88 E-value=3.1e-23 Score=197.64 Aligned_cols=146 Identities=23% Similarity=0.312 Sum_probs=121.8
Q ss_pred CCCCC-CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCC---HHHHHHHHhhc-
Q psy4222 134 SPFKS-LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN---PAMTEMLLEII- 208 (367)
Q Consensus 134 ~~f~~-~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~---~~iv~~LL~~~- 208 (367)
.++.. .+..+.|+||+||..|+.++| ++|++.|+++ +.+|..|+||||+|+..|+ .++++.|++.+
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v--------~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~ 191 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELV--------KHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence 34444 467788999999999999999 9999999999 6889999999999999998 67777777765
Q ss_pred C-----CCCCcccccccCC----CChHHHHHHHHhc--------------------------------------------
Q psy4222 209 G-----NPAFTNLLYDSDT----PSYIERSDILLDL-------------------------------------------- 235 (367)
Q Consensus 209 ~-----d~~~~~~~~~~~~----~~~~~~v~~Ll~~-------------------------------------------- 235 (367)
+ +.....+++.++. .++.+++++|++.
T Consensus 192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~L 271 (327)
T 1sw6_A 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271 (327)
T ss_dssp GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHH
Confidence 2 3344555555544 7888888888765
Q ss_pred ---CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCC
Q psy4222 236 ---YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD 290 (367)
Q Consensus 236 ---~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g 290 (367)
+++..|. .|+||||+||..|+.++|++||++| ++++.+|.+|+||||+|+..|
T Consensus 272 l~~~~n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 272 IANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHTTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred HHhCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence 5788888 9999999999999999999999999 999999999999999998764
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.88 E-value=3.5e-22 Score=178.35 Aligned_cols=145 Identities=16% Similarity=0.113 Sum_probs=128.6
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FT 214 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~ 214 (367)
+..+.|+||.|+..|+.+++ ++|++.+.......+..|+||||+|+..|+.+++++|++.+++.+ ..
T Consensus 55 ~~~g~t~L~~A~~~~~~~~v--------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 126 (223)
T 2f8y_A 55 DNMGRTPLHAAVSADAQGVF--------QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 126 (223)
T ss_dssp CTTSCCHHHHHHHTTCHHHH--------HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSC
T ss_pred CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCC
Confidence 34556899999999999999 888888874446778899999999999999999999999987643 45
Q ss_pred ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222 215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL 292 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~ 292 (367)
.+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~ 204 (223)
T 2f8y_A 127 SALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHH 204 (223)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcch
Confidence 66777788899999999999987665 55 8999999999999999999999999 99999999999999999999987
Q ss_pred HH
Q psy4222 293 EN 294 (367)
Q Consensus 293 ~~ 294 (367)
+.
T Consensus 205 ~i 206 (223)
T 2f8y_A 205 DI 206 (223)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.88 E-value=6.8e-22 Score=184.26 Aligned_cols=144 Identities=21% Similarity=0.180 Sum_probs=112.4
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN 215 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~ 215 (367)
..+.|+||.||..|+++.| ++|++.|+++ +..+..|+||||+||..|+.+++++|++.|++.+ ...
T Consensus 38 ~~~~t~l~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 108 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEV--------LRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI 108 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHH--------HHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cCCccHHHHHHHcCCHHHH--------HHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence 4456788888888888888 7777777666 4567777777777777777777777777776532 344
Q ss_pred cccccCCCChHHHHHHHHhcCCCCC--CC---------------------------------------------------
Q psy4222 216 LLYDSDTPSYIERSDILLDLYVNTP--DK--------------------------------------------------- 242 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~--------------------------------------------------- 242 (367)
+++.++..++.+++++|++.|+++. +.
T Consensus 109 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (299)
T 1s70_B 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhcc
Confidence 5666666677777777777765443 11
Q ss_pred --------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 243 --------ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 243 --------~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
..|.||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~ 247 (299)
T 1s70_B 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEA 247 (299)
T ss_dssp CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHH
Confidence 15889999999999999999999999 9999999999999999999998874
No 39
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.88 E-value=3.9e-22 Score=168.43 Aligned_cols=139 Identities=20% Similarity=0.227 Sum_probs=121.9
Q ss_pred hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcC-CCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCccc
Q psy4222 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNL 216 (367)
Q Consensus 143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g-~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~ 216 (367)
..++||.||..|+.+.+ ++|++.. .++ +..+..|+||||+ |..|+.+++++|++.|++. ....+
T Consensus 2 ~~~~L~~A~~~g~~~~v--------~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 71 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEV--------RRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSP 71 (156)
T ss_dssp HHHHHHHHHHHTCHHHH--------HHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cchHHHHHHHhCCHHHH--------HHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 35899999999999999 7777662 344 5778899999999 9999999999999998864 34566
Q ss_pred ccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 217 LYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 217 ~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.++|++|+++ ++++.+|..|.||||+|+..|+.+.
T Consensus 72 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 72 VHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 777788899999999999987665 55 899999999999999999999998 7999999999999999999998774
No 40
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.88 E-value=9.4e-23 Score=186.68 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccC----CCCCCcHHHHHH---HcCCHHHHHHHHhhcCCC---
Q psy4222 142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH----EGCRYNALHVST---KAVNPAMTEMLLEIIGNP--- 211 (367)
Q Consensus 142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~----d~~G~TpLh~Aa---~~g~~~iv~~LL~~~~d~--- 211 (367)
-+.++||.||+.|+.+.|+.++ ++|+..|.+.. .. +..|+||||+|+ ..|+.+++++|++.+++.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll----~~l~~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~ 78 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLL----SFLLTHKKRLT-DEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM 78 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHH----HHHHHHTCCTT-SGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHhCCHHHHHHHH----HHHHhcCCCcc-hhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence 3568999999999999998888 78888887773 33 377999999999 779999999999987532
Q ss_pred -------------CCcccccccCCCChHHHHHHHHhcCCCCCCC---------------CCCCcHHHHHHHcCCHHHHHH
Q psy4222 212 -------------AFTNLLYDSDTPSYIERSDILLDLYVNTPDK---------------ALNETPLHFAAKFGSVECVKR 263 (367)
Q Consensus 212 -------------~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~---------------~~g~TpLH~Aa~~g~~~vv~~ 263 (367)
....+++.++..++.+++++|++.|+++... ..|+||||+||..|+.++|++
T Consensus 79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 4566777788899999999999999777643 269999999999999999999
Q ss_pred HHh---CCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 264 LIG---CAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 264 LL~---~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
|++ +| ++++.+|..|+||||+|+..++
T Consensus 159 Ll~~~~~g-a~~~~~d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 159 LTENGHKQ-ADLRRQDSRGNTVLHALVAIAD 188 (260)
T ss_dssp HHHCSSCC-CCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHhccccC-CCCcccCCCCCcHHHHHHHhcc
Confidence 999 88 9999999999999999996544
No 41
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.88 E-value=2e-22 Score=186.18 Aligned_cols=149 Identities=16% Similarity=0.121 Sum_probs=124.5
Q ss_pred CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc---ccCCCCCCcHHHHHHHc---CCHHHHHHHHhhcCC-
Q psy4222 138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT---ILHEGCRYNALHVSTKA---VNPAMTEMLLEIIGN- 210 (367)
Q Consensus 138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~---~~~d~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d- 210 (367)
..+..+.|+||.||+.|+++.|+.++ +++.+.+.+.. ...+..|+||||+|+.. |+.+++++||+.+++
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLL----PFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHH----HHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHH----HHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 35567789999999999999996666 55555665442 14578899999999987 999999999999753
Q ss_pred ---------------CCCcccccccCCCChHHHHHHHHhcCCCCCCCC---------------CCCcHHHHHHHcCCHHH
Q psy4222 211 ---------------PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKA---------------LNETPLHFAAKFGSVEC 260 (367)
Q Consensus 211 ---------------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~---------------~g~TpLH~Aa~~g~~~v 260 (367)
.....+++.++..++.+++++|++.|+++.... .|+||||+||..|+.++
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 356677777888899999999999998877442 59999999999999999
Q ss_pred HHHHHh---CCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 261 VKRLIG---CAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 261 v~~LL~---~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
|++|++ +| ++++.+|..|+||||+|+..++
T Consensus 164 v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~~~~ 196 (273)
T 2pnn_A 164 VKFLLQNSWQP-ADISARDSVGNTVLHALVEVAD 196 (273)
T ss_dssp HHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHHHhcccCC-CCceeeCCCCCcHHHHHHHccC
Confidence 999999 88 9999999999999999998665
No 42
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.88 E-value=1.5e-22 Score=181.62 Aligned_cols=144 Identities=25% Similarity=0.203 Sum_probs=127.2
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.. .
T Consensus 69 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 139 (231)
T 3aji_A 69 KDDAGWSPLHIAASAGXDEIV--------KALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHcCHHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 345567899999999999999 9999999888 5778899999999999999999999999988643 4
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
..+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++
T Consensus 140 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~ 217 (231)
T 3aji_A 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLG 217 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCccccCC-CCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHH
Confidence 456777777899999999999987665 56 8999999999999999999999999 9999999999999999987655
Q ss_pred HH
Q psy4222 292 LE 293 (367)
Q Consensus 292 ~~ 293 (367)
.+
T Consensus 218 ~~ 219 (231)
T 3aji_A 218 LI 219 (231)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=1.1e-22 Score=168.55 Aligned_cols=118 Identities=27% Similarity=0.349 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD 219 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~ 219 (367)
+..+.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------- 68 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSV--------EYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL--------- 68 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---------
Confidence 45567999999999999999 8999999888 67889999999999999999999999998866
Q ss_pred cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++..+. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..+..+.
T Consensus 69 -----------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~ 124 (137)
T 3c5r_A 69 -----------------VNTTGY-QNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSL 124 (137)
T ss_dssp -----------------TTCCCG-GGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHH
T ss_pred -----------------ccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHH
Confidence 555666 8999999999999999999999999 9999999999999999997766553
No 44
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.88 E-value=9.5e-23 Score=190.10 Aligned_cols=139 Identities=22% Similarity=0.240 Sum_probs=120.3
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF----- 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~----- 213 (367)
.+..+.|+||.||..|+.++| ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++...
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 139 (299)
T 1s70_B 69 ANVDGLTALHQACIDDNVDMV--------KFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139 (299)
T ss_dssp BCTTCCBHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence 345567999999999999999 9999999988 67888999999999999999999999999875321
Q ss_pred ------------------------------------------------------------cccccccCCCChHHHHHHHH
Q psy4222 214 ------------------------------------------------------------TNLLYDSDTPSYIERSDILL 233 (367)
Q Consensus 214 ------------------------------------------------------------~~~~~~~~~~~~~~~v~~Ll 233 (367)
..+++.++..++.+++++|+
T Consensus 140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 219 (299)
T 1s70_B 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219 (299)
T ss_dssp CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence 12333444567889999999
Q ss_pred hcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222 234 DLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG 288 (367)
Q Consensus 234 ~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~ 288 (367)
+.|+++. |. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.
T Consensus 220 ~~g~d~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 220 QARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp TTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS
T ss_pred HcCCCCCCcCC-CCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence 9986665 56 8999999999999999999999999 9999999999999999975
No 45
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=188.04 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=129.8
Q ss_pred CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHH-----HcCCHHHHHHHHhhcCCC-
Q psy4222 138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVST-----KAVNPAMTEMLLEIIGNP- 211 (367)
Q Consensus 138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa-----~~g~~~iv~~LL~~~~d~- 211 (367)
..+..+.|+||+||..|+.+.| ++|++.|+...+..+..|+||||+|+ ..++.+++++|++.+.+.
T Consensus 106 ~~d~~g~T~Lh~A~~~g~~~~v--------~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~ 177 (276)
T 4hbd_A 106 IADSNGNTALHYSVSHANFPVV--------QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA 177 (276)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHH--------HHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC
T ss_pred CCCCCCCCHHHHHHHCCCHHHH--------HHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc
Confidence 3456678999999999999999 99999998444788999999999999 678999999999998753
Q ss_pred ----CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCChHHH
Q psy4222 212 ----AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLD 284 (367)
Q Consensus 212 ----~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~-~g~ad~~~~n~~G~TPL~ 284 (367)
....+++.++..++.+++++|++.|++++ |. .|+||||+||..|+.++|++|++ .| ++++.+|..|+||||
T Consensus 178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~TpL~ 255 (276)
T 4hbd_A 178 KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIAGLLLAVPS-CDISLTDRDGSTALM 255 (276)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTSTT-CCTTCCCTTSCCHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCC-CCCcCcCCCCCCHHH
Confidence 35566777888899999999999997665 66 99999999999999999999999 77 999999999999999
Q ss_pred HHhcCCcHHH
Q psy4222 285 SSSGLDLLEN 294 (367)
Q Consensus 285 iA~~~g~~~~ 294 (367)
+|+..|+.+.
T Consensus 256 ~A~~~g~~~i 265 (276)
T 4hbd_A 256 VALDAGQSEI 265 (276)
T ss_dssp HHHHHTCHHH
T ss_pred HHHHcCCHHH
Confidence 9999998774
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.87 E-value=4.7e-23 Score=188.45 Aligned_cols=145 Identities=19% Similarity=0.075 Sum_probs=124.5
Q ss_pred ChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccc----------cCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222 140 KSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTI----------LHEGCRYNALHVSTKAVNPAMTEMLLE 206 (367)
Q Consensus 140 ~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~----------~~d~~G~TpLh~Aa~~g~~~iv~~LL~ 206 (367)
+..+.|+||+|+.. |+.++| ++|++.|+++.. ..|..|+||||+|+..|+.+++++|++
T Consensus 40 d~~g~t~L~~A~~~~~~g~~~~v--------~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 111 (256)
T 2etb_A 40 GSTGKTCLMKAVLNLQDGVNACI--------MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111 (256)
T ss_dssp TTTTBCHHHHHHHTCBTTBCTTH--------HHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccccchHHHH--------HHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 45667999999999 999999 777777655421 124679999999999999999999999
Q ss_pred hcCCCC------------------CcccccccCCCChHHHHHHHHh---cCCCCC--CCCCCCcHHHHHHH--cCCHH--
Q psy4222 207 IIGNPA------------------FTNLLYDSDTPSYIERSDILLD---LYVNTP--DKALNETPLHFAAK--FGSVE-- 259 (367)
Q Consensus 207 ~~~d~~------------------~~~~~~~~~~~~~~~~v~~Ll~---~~~n~~--d~~~g~TpLH~Aa~--~g~~~-- 259 (367)
.|++.+ ...+++.++..++.+++++|++ .|++++ |. .|+||||+||. .++.+
T Consensus 112 ~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~-~g~TpLh~A~~~~~~~~~~~ 190 (256)
T 2etb_A 112 NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS-LGNTVLHALVMIADNSPENS 190 (256)
T ss_dssp TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHH
T ss_pred cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCC-CCCCHHHHHHHcccCCchhh
Confidence 998643 5566777788899999999999 886665 66 89999999999 78888
Q ss_pred -----HHHHHHhCCCCCC-------CCCCCCCChHHHHHhcCCcHHH
Q psy4222 260 -----CVKRLIGCAKIQT-------SVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 260 -----vv~~LL~~g~ad~-------~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+|++|+++| +++ +.+|..|+||||+|+..|+.+.
T Consensus 191 ~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 236 (256)
T 2etb_A 191 ALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236 (256)
T ss_dssp HHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence 999999999 899 9999999999999999998774
No 47
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.87 E-value=8e-22 Score=173.13 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCC-CccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222 142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD-FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN 215 (367)
Q Consensus 142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~-~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~ 215 (367)
.+.++||.||..|+.+.| ++|+..+. ++ +..+..|+||||+|+..|+.+++++|++.|++.+ ...
T Consensus 4 ~~~~~L~~A~~~g~~~~v--------~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 74 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKV--------KEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDS 74 (201)
T ss_dssp CCTTHHHHHHHTTCHHHH--------HHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccccHHHHHHHhccHHHH--------HHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 456899999999999999 77776665 44 6778899999999999999999999999998744 345
Q ss_pred cccccCCCChHHHHHHHHh-cC--CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 216 LLYDSDTPSYIERSDILLD-LY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~-~~--~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
+++.++..++.+++++|++ .+ ++..+. .|.||||+|+..|+.+++++|+++|.++++.+|..|+||||+|+..+.
T Consensus 75 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 75 PYLYAGAQGRTEILAYMLKHATPDLNKHNR-YGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred HHHHHHHcCCHHHHHHHHhccCcccccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence 6677778899999999994 44 344466 899999999999999999999999978999999999999999998776
No 48
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.87 E-value=7.7e-22 Score=187.04 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=130.5
Q ss_pred hhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222 124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEM 203 (367)
Q Consensus 124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~ 203 (367)
+..++..+. +....+..+.|+||.|+..|+.+++ ++|++.|+++ +..+..|+||||+|+..|+.+++++
T Consensus 74 v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~iv--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~ 142 (351)
T 3utm_A 74 VQLLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVT--------ELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSL 142 (351)
T ss_dssp HHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCC--CCCccCCCCCcHHHHHHHCCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 333444433 3444556778999999999999999 9999999888 5788899999999999999999999
Q ss_pred HHhhcCCCCCc-----------------------------------------------------------ccccccCCC-
Q psy4222 204 LLEIIGNPAFT-----------------------------------------------------------NLLYDSDTP- 223 (367)
Q Consensus 204 LL~~~~d~~~~-----------------------------------------------------------~~~~~~~~~- 223 (367)
|++.++++... .+++.+...
T Consensus 143 Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~ 222 (351)
T 3utm_A 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL 222 (351)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCC
T ss_pred HHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHh
Confidence 99998875431 222222222
Q ss_pred --ChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 224 --SYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 224 --~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+..+++++|++.|++++ +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 223 ~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~ 295 (351)
T 3utm_A 223 HPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQT 295 (351)
T ss_dssp STTHHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CccHHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 67899999999987665 55 8999999999999999999999999 9999999999999999999998874
No 49
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.87 E-value=6e-23 Score=191.84 Aligned_cols=142 Identities=15% Similarity=0.055 Sum_probs=128.7
Q ss_pred hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C-ccc
Q psy4222 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F-TNL 216 (367)
Q Consensus 143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~-~~~ 216 (367)
+.|+||+|+..|+.++| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.|++.+ . ..+
T Consensus 62 g~t~L~~A~~~g~~~~v--------~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~ 132 (285)
T 3kea_A 62 NEFPLHQAATLEDTKIV--------KILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS 132 (285)
T ss_dssp TCCHHHHHTTSSSCHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSH
T ss_pred CCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Confidence 56899999999999999 9999999998 5788999999999999999999999999988643 2 466
Q ss_pred ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChH-HHHHhcCCcHHH
Q psy4222 217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP-LDSSSGLDLLEN 294 (367)
Q Consensus 217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TP-L~iA~~~g~~~~ 294 (367)
++.++..++.+++++|++.|.+..+...|+||||+|+..|+.++|++|+++| ++++.+|..|+|| ||+|+..++.+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~ 210 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEM 210 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHH
Confidence 7778888999999999999988876558999999999999999999999999 9999999999998 999999988764
No 50
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.86 E-value=7.7e-22 Score=184.17 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC----Ccccccc
Q psy4222 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA----FTNLLYD 219 (367)
Q Consensus 144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~----~~~~~~~ 219 (367)
.|+||.|+..|+.++| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++.. ...+++.
T Consensus 93 ~t~L~~A~~~g~~~~v--------~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~ 163 (285)
T 3d9h_A 93 VSPLHEACLGGHLSCV--------KILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHE 163 (285)
T ss_dssp CCHHHHHHHTTCHHHH--------HHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHH
T ss_pred CCHHHHHHHCCcHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHH
Confidence 3455555555555555 4444444444 3444445555555555555555555555444321 2233333
Q ss_pred cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222 220 SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE 293 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~ 293 (367)
++..++.+++++|++.|+++. +. .|+||||+|+..|+.++|++|+++| ++++. |..|+||||+|+..++.+
T Consensus 164 A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~ 236 (285)
T 3d9h_A 164 AARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVVRTASEE 236 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHTTCHHHHHHHHHTT-CCTTC-CBTTBCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCCHH
Confidence 344444445555554443332 22 4445555555555555555555554 44442 444555555555444443
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.86 E-value=1.8e-21 Score=168.40 Aligned_cols=123 Identities=20% Similarity=0.149 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTN 215 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~ 215 (367)
..+.|+||.|+..|+.+.+ ++|++.|+++ +.+|..|+||||+|+..|+.+++++||+.|++. ...+
T Consensus 35 ~~g~t~l~~a~~~~~~~~~--------~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~T 105 (169)
T 4gpm_A 35 SDGRTPLHHAAENGHKEVV--------KLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 105 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCCHHHHHHHcCCHHHH--------HHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCC
Confidence 4556899999999999999 8889999998 688999999999999999999999999999864 3456
Q ss_pred cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q psy4222 216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV 274 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~ 274 (367)
+++.++..++.+++++|++.|+++. |. .|+||||+|+.+|+.++|++|+++| |+++.
T Consensus 106 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~G-A~ie~ 164 (169)
T 4gpm_A 106 PLHHAAENGHKEVVKLLISKGADVNTSDS-DGRTPLDLAREHGNEEVVKLLEKQG-GWLEH 164 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCcCC
Confidence 7777888899999999999987665 56 8999999999999999999999999 88764
No 52
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.86 E-value=1.3e-22 Score=183.28 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=122.7
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCC----CccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC--
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD----FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-- 212 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~----~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-- 212 (367)
.+..+.|+||+|+..|+.+.+ ++|+..+. ++ +.++..|+||||+|+..|+.+++++|++.|++..
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 74 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALT--------MEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSS--------SCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC
T ss_pred CCCCCCchhHHHHHcCChhHH--------HHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 345567899999999999999 77766554 44 5778899999999999999999999999988643
Q ss_pred ---CcccccccCCCChHHHHHHHHhcCC--------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCC
Q psy4222 213 ---FTNLLYDSDTPSYIERSDILLDLYV--------NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK-EGK 280 (367)
Q Consensus 213 ---~~~~~~~~~~~~~~~~v~~Ll~~~~--------n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~-~G~ 280 (367)
...+++.++..++.+++++|++.+. +..+. .|+||||+|+..|+.++|++|+++| ++++.++. .|+
T Consensus 75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~ 152 (236)
T 1ikn_D 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY-NGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGR 152 (236)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT-TCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCC
Confidence 4566777788899999999999985 34455 8999999999999999999999999 99999998 999
Q ss_pred hHHHHHhcCCcHHH
Q psy4222 281 TPLDSSSGLDLLEN 294 (367)
Q Consensus 281 TPL~iA~~~g~~~~ 294 (367)
||||+|+..|+.+.
T Consensus 153 tpL~~A~~~~~~~~ 166 (236)
T 1ikn_D 153 TALHLAVDLQNPDL 166 (236)
T ss_dssp CHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHH
Confidence 99999999998874
No 53
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.86 E-value=4.5e-21 Score=182.43 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=112.2
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCC-CCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC----
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHE-GCRYNALHVSTKAVNPAMTEMLLEIIGNPAF---- 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~---- 213 (367)
...++.|+||.||+.|++++| ++|++.|+++. .++ ..|+||||+||..|+.++|++||++|+++..
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V--------~~LL~~Gadvn-~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~ 91 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLV--------QQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHH--------HHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCChHHHHHHHcCCHHHH--------HHHHHCCCCCC-ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccC
Confidence 345678999999999999999 99999999994 554 5699999999999999999999999875432
Q ss_pred ----------------------------------cccccccCCCChHHHHHHHHhcCCCCCC--C---------CCCCcH
Q psy4222 214 ----------------------------------TNLLYDSDTPSYIERSDILLDLYVNTPD--K---------ALNETP 248 (367)
Q Consensus 214 ----------------------------------~~~~~~~~~~~~~~~v~~Ll~~~~n~~d--~---------~~g~Tp 248 (367)
..+++.++..++.+++++|++.|+++.- . ..|.||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence 2234444557788899999988866541 1 158899
Q ss_pred HHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCChHHHHHh
Q psy4222 249 LHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSS 287 (367)
Q Consensus 249 LH~Aa~~g~~~vv~~LL~-~g~ad~~~~n~~G~TPL~iA~ 287 (367)
||+||..|+.++|++||+ .| ++++.+|..|.||++.++
T Consensus 172 L~~A~~~g~~~~v~~LL~~~g-ad~n~~d~~g~t~l~~~~ 210 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMG-ADVNACDNMGRNALIHAL 210 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC-CCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhccC-CCcCccCCCCCcHHHHHH
Confidence 999999999999999985 46 888888888888888766
No 54
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.86 E-value=1.8e-21 Score=188.68 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=129.1
Q ss_pred CCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhc---C-
Q psy4222 134 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEII---G- 209 (367)
Q Consensus 134 ~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~---~- 209 (367)
.+....+..+.|+||.|+..|+.++| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+ .
T Consensus 157 a~vn~~d~~g~TpL~~A~~~g~~~iv--------~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 227 (373)
T 2fo1_E 157 ADVNAMDCDENTPLMLAVLARRRRLV--------AYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD 227 (373)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred CCCcCCCCCCCCHHHHHHHcChHHHH--------HHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence 34555667788999999999999999 9999999998 578899999999999999999999999976 2
Q ss_pred ----CCCCcccccccCCCC---hHHHHHHHHhcCCCCC----------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy4222 210 ----NPAFTNLLYDSDTPS---YIERSDILLDLYVNTP----------DKALNETPLHFAAKFGSVECVKRLIGCAKIQT 272 (367)
Q Consensus 210 ----d~~~~~~~~~~~~~~---~~~~v~~Ll~~~~n~~----------d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~ 272 (367)
+.....+++.++..+ +.+++++|++.|+++. +. .|+||||+||..|+.++|++|++++.+++
T Consensus 228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 306 (373)
T 2fo1_E 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY-KGRTALHYAAQVSNMPIVKYLVGEKGSNK 306 (373)
T ss_dssp TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC-CCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccc-cCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence 334445555555444 8999999999987764 33 79999999999999999999998766899
Q ss_pred CCCCCCCChHHHHHhcCCcHHHH
Q psy4222 273 SVRNKEGKTPLDSSSGLDLLENY 295 (367)
Q Consensus 273 ~~~n~~G~TPL~iA~~~g~~~~l 295 (367)
+.+|..|+||||+|+..|+.+.+
T Consensus 307 n~~d~~g~TpL~~A~~~g~~~iv 329 (373)
T 2fo1_E 307 DKQDEDGKTPIMLAAQEGRIEVV 329 (373)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHH
T ss_pred cCcCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999988743
No 55
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.86 E-value=1.5e-21 Score=187.62 Aligned_cols=139 Identities=22% Similarity=0.217 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhh----cCCC------
Q psy4222 142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI----IGNP------ 211 (367)
Q Consensus 142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~----~~d~------ 211 (367)
.+.|+||+|+..|+.++| ++|++.|++.. +..|+||||+|+..|+.+++++|++. +.+.
T Consensus 52 ~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 120 (364)
T 3ljn_A 52 FGCTALHLACKFGCVDTA--------KYLASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNE 120 (364)
T ss_dssp TCCCHHHHHHHHCCHHHH--------HHHHHHCCCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTC
T ss_pred CCCcHHHHHHHcCCHHHH--------HHHHHCCCCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhh
Confidence 344677777777777777 66666665432 23456666666666666666666665 3221
Q ss_pred ----------------CCcccccccCCCC--hHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222 212 ----------------AFTNLLYDSDTPS--YIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQ 271 (367)
Q Consensus 212 ----------------~~~~~~~~~~~~~--~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad 271 (367)
....+++.++..+ +.+++++|++.|+++. +. .|+||||+||..|+.++|++|+++| ++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g-~~ 198 (364)
T 3ljn_A 121 CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAMEFRNREALDLMMDTV-PS 198 (364)
T ss_dssp CCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHC-SC
T ss_pred cchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHhcc-cc
Confidence 1233444444555 6666666666654433 33 5666666666666666666666665 55
Q ss_pred -----CCCCCCCCChHHHHHhcCCcHH
Q psy4222 272 -----TSVRNKEGKTPLDSSSGLDLLE 293 (367)
Q Consensus 272 -----~~~~n~~G~TPL~iA~~~g~~~ 293 (367)
++.+|..|+||||+|+..|+.+
T Consensus 199 ~~~~~~~~~~~~g~t~L~~A~~~g~~~ 225 (364)
T 3ljn_A 199 KSSLRLDYANKQGNSHLHWAILINWED 225 (364)
T ss_dssp SSSCCTTCCCTTCCCTTHHHHTTTCHH
T ss_pred cccccccccCCCCCcHHHHHHHcCCHH
Confidence 6666666666666666666554
No 56
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.86 E-value=1.6e-22 Score=185.17 Aligned_cols=144 Identities=15% Similarity=0.056 Sum_probs=121.5
Q ss_pred hhhHHHHHHHH---HcCCHHHHHHHHhcCChhHHhcCCCc----------cccCCCCCCcHHHHHHHcCCHHHHHHHHhh
Q psy4222 141 SQELVKLRKLI---EKGNLADVRKLVWDNPRYLVSSGDFP----------TILHEGCRYNALHVSTKAVNPAMTEMLLEI 207 (367)
Q Consensus 141 ~~~lt~L~~A~---~~G~~~~v~~ll~~~p~~Ll~~g~~~----------~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~ 207 (367)
..+.|+||.|+ ..|+.++| ++|++.|+++ ....|..|+||||+||..|+.+++++||+.
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v--------~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTI--------PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHH--------HHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhhcCCHHHH--------HHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 44679999999 77999999 6666665432 123345799999999999999999999999
Q ss_pred cCCCC-------------------CcccccccCCCChHHHHHHHHh---cCCCCC--CCCCCCcHHHHHHHcCC------
Q psy4222 208 IGNPA-------------------FTNLLYDSDTPSYIERSDILLD---LYVNTP--DKALNETPLHFAAKFGS------ 257 (367)
Q Consensus 208 ~~d~~-------------------~~~~~~~~~~~~~~~~v~~Ll~---~~~n~~--d~~~g~TpLH~Aa~~g~------ 257 (367)
|++.+ ...+++.++..++.+++++|++ .|+++. |. .|+||||+||..|+
T Consensus 116 ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~-~g~TpLh~A~~~~~~~~~~~ 194 (260)
T 3jxi_A 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTRENT 194 (260)
T ss_dssp TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSSHHHH
T ss_pred CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCC-CCCcHHHHHHHhccCchhHH
Confidence 98743 4456777788899999999999 776665 66 89999999999988
Q ss_pred ---HHHHHHHHhCCCCCC-------CCCCCCCChHHHHHhcCCcHHH
Q psy4222 258 ---VECVKRLIGCAKIQT-------SVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 258 ---~~vv~~LL~~g~ad~-------~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
.+++++|+++| +++ +.+|..|+||||+|+..|+.+.
T Consensus 195 ~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 240 (260)
T 3jxi_A 195 KFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240 (260)
T ss_dssp HHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence 79999999999 888 7899999999999999998874
No 57
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.86 E-value=4.5e-21 Score=176.20 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN 215 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~ 215 (367)
.++.++||.|++.|+++.| ++|++.|.++....+..|+||||+|+..|+.+++++|++.+++.. ...
T Consensus 3 ~~g~~~L~~A~~~g~~~~v--------~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 74 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLV--------QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 74 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHH--------HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred cccchHHHHHHHcCCHHHH--------HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC
Confidence 3567899999999999999 888899988854447889999999999999999999999988643 446
Q ss_pred cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC----------CCCCChHH
Q psy4222 216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVR----------NKEGKTPL 283 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~----------n~~G~TPL 283 (367)
+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|+++| ++++.+ +..|.|||
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 75 PFLLAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHH
Confidence 6777778899999999999987766 55 8999999999999999999999999 899988 88899999
Q ss_pred HHHhcCCcHHH
Q psy4222 284 DSSSGLDLLEN 294 (367)
Q Consensus 284 ~iA~~~g~~~~ 294 (367)
|+|+..|+.+.
T Consensus 153 ~~A~~~~~~~~ 163 (285)
T 1wdy_A 153 MDAAEKGHVEV 163 (285)
T ss_dssp HHHHHHTCHHH
T ss_pred HHHHHcCCHHH
Confidence 99999988774
No 58
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=2.6e-21 Score=156.51 Aligned_cols=115 Identities=29% Similarity=0.398 Sum_probs=104.6
Q ss_pred hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCC
Q psy4222 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT 222 (367)
Q Consensus 143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~ 222 (367)
+.|+||.|+..|+.+.+ ++|++.|.++ +..+..|.||||+|+..|+.+++++|++.+++
T Consensus 2 g~t~L~~A~~~~~~~~v--------~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------ 60 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVV--------KLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------ 60 (126)
T ss_dssp CCCHHHHHHHHTCHHHH--------HHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------
T ss_pred CccHHHHHHHcCcHHHH--------HHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC------------
Confidence 34799999999999999 8888888887 57788999999999999999999999998866
Q ss_pred CChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 223 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 223 ~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++..+. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus 61 --------------~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~ 116 (126)
T 1n0r_A 61 --------------VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEV 116 (126)
T ss_dssp --------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred --------------CcccCC-CCCcHHHHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHH
Confidence 455566 8999999999999999999999999 9999999999999999999998764
No 59
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.86 E-value=1.5e-21 Score=192.02 Aligned_cols=143 Identities=23% Similarity=0.238 Sum_probs=95.9
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT 214 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~ 214 (367)
+..+.|+||.||..|+++.| ++|++.|+++ +..+..|.||||+||..|+.+++++|++.+++. ...
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v--------~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 81 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIV--------KNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ 81 (437)
T ss_dssp ----CCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred CCCCCCHHHHHHHCCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 34456777788877877777 7777777666 456666777777777777777777777776643 234
Q ss_pred ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222 215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL 292 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~ 292 (367)
.+++.++..++.+++++|++.|+++. +. .|.||||+|+..|+.++|++|++++ ++.+..+..|.||||+|+..|+.
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~ 159 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKV 159 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHCCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHcCCH
Confidence 45555666677777777777765544 44 6677777777777777777777776 66666677777777777766666
Q ss_pred H
Q psy4222 293 E 293 (367)
Q Consensus 293 ~ 293 (367)
+
T Consensus 160 ~ 160 (437)
T 1n11_A 160 R 160 (437)
T ss_dssp H
T ss_pred H
Confidence 5
No 60
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.86 E-value=3.8e-21 Score=182.26 Aligned_cols=173 Identities=15% Similarity=0.081 Sum_probs=139.1
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||+|+..|+.++| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++.+ .
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g 124 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIV--------QLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence 345567899999999999999 9999999988 6788999999999999999999999999998644 4
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCCC----------------------------------------------------
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTPD---------------------------------------------------- 241 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~d---------------------------------------------------- 241 (367)
..+++.++..++.+++++|++.|++...
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence 4567777888999999999999876531
Q ss_pred ---CCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHHHhhhchHHHHhccCCCCCCC
Q psy4222 242 ---KALNETPLHFAAKF---GSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNT 315 (367)
Q Consensus 242 ---~~~g~TpLH~Aa~~---g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ll~~~~~~~l~~~~~~~~~~t 315 (367)
...|+||||+|+.. +..+++++|+++| ++++.+|..|+||||+|+..|+.+.+- .++.. |..
T Consensus 205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~-----~Ll~~------ga~ 272 (351)
T 3utm_A 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVME-----VLHKH------GAK 272 (351)
T ss_dssp CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHH-----HHHHT------TCC
T ss_pred ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHHcCCHHHHH-----HHHHC------CCC
Confidence 12678999999999 5589999999999 999999999999999999999887431 11221 122
Q ss_pred CCCCCccccchHHHhcc
Q psy4222 316 VDQPSVDMISPIEKLCV 332 (367)
Q Consensus 316 ~~~~~~~~~~~l~~~~~ 332 (367)
++.......+|++..+.
T Consensus 273 ~n~~d~~g~t~L~~A~~ 289 (351)
T 3utm_A 273 MNALDSLGQTALHRAAL 289 (351)
T ss_dssp TTCCCTTSCCHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHH
Confidence 23334455677776655
No 61
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.86 E-value=2.6e-22 Score=185.41 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=122.4
Q ss_pred ChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCcc----------ccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222 140 KSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPT----------ILHEGCRYNALHVSTKAVNPAMTEMLLE 206 (367)
Q Consensus 140 ~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~----------~~~d~~G~TpLh~Aa~~g~~~iv~~LL~ 206 (367)
+..+.|+||+|+.. |+.++| ++|++.|+++. ...|..|+||||+|+..|+.+++++||+
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v--------~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 122 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTI--------ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHH--------HHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhcCChHHH--------HHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34567999999987 999999 66666654321 1146689999999999999999999999
Q ss_pred hcCCCC-------------------CcccccccCCCChHHHHHHHHh---cCCCCC--CCCCCCcHHHHHHHcCC-----
Q psy4222 207 IIGNPA-------------------FTNLLYDSDTPSYIERSDILLD---LYVNTP--DKALNETPLHFAAKFGS----- 257 (367)
Q Consensus 207 ~~~d~~-------------------~~~~~~~~~~~~~~~~v~~Ll~---~~~n~~--d~~~g~TpLH~Aa~~g~----- 257 (367)
.|++.+ ...+++.++..++.+++++|++ .|+++. |. .|+||||+||..|+
T Consensus 123 ~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~~~~~~~~~ 201 (273)
T 2pnn_A 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDN 201 (273)
T ss_dssp TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHH
T ss_pred CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCC-CCCcHHHHHHHccCcchhH
Confidence 998743 4556777788899999999999 776665 66 89999999999998
Q ss_pred ----HHHHHHHHhCCCCCCC-------CCCCCCChHHHHHhcCCcHHH
Q psy4222 258 ----VECVKRLIGCAKIQTS-------VRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 258 ----~~vv~~LL~~g~ad~~-------~~n~~G~TPL~iA~~~g~~~~ 294 (367)
.+++++|+++| ++++ .+|..|+||||+|+..|+.+.
T Consensus 202 ~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 202 TKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp HHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHhChHHH
Confidence 89999999999 8886 599999999999999998874
No 62
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.86 E-value=5.1e-21 Score=175.86 Aligned_cols=145 Identities=18% Similarity=0.131 Sum_probs=112.9
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF----- 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~----- 213 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|.++ +..+..|+||||+|+..|+.+++++|++.+++...
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 138 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLL--------KLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC
T ss_pred cCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH
Confidence 445566888888888888888 7778888777 56677788888888888888888888888776443
Q ss_pred ----------cccccccCCCChHHHHHHHHhc-CCCCC--CCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCCCC
Q psy4222 214 ----------TNLLYDSDTPSYIERSDILLDL-YVNTP--DKALNETPLHFAAKFGS----VECVKRLIGCAKIQTSVRN 276 (367)
Q Consensus 214 ----------~~~~~~~~~~~~~~~v~~Ll~~-~~n~~--d~~~g~TpLH~Aa~~g~----~~vv~~LL~~g~ad~~~~n 276 (367)
..+++.++..++.+++++|++. ++++. +. .|+||||+|+..|+ .+++++|+++| ++++.+|
T Consensus 139 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~ 216 (285)
T 1wdy_A 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRG 216 (285)
T ss_dssp HHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCC
T ss_pred HHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcC
Confidence 2556666667788888888876 65444 55 78888888888888 88888888888 8888888
Q ss_pred CCCChHHHHHhcCCcHHH
Q psy4222 277 KEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 277 ~~G~TPL~iA~~~g~~~~ 294 (367)
..|+||||+|+..|+.+.
T Consensus 217 ~~g~t~L~~A~~~~~~~~ 234 (285)
T 1wdy_A 217 ERGKTPLILAVEKKHLGL 234 (285)
T ss_dssp TTSCCHHHHHHHTTCHHH
T ss_pred CCCCcHHHHHHHcCCHHH
Confidence 888888888888887764
No 63
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.85 E-value=3e-21 Score=189.96 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCccc
Q psy4222 142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNL 216 (367)
Q Consensus 142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~ 216 (367)
.+.|+||.|+..|+.+.| ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++. ....+
T Consensus 244 ~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 314 (437)
T 1n11_A 244 QGVTPLHLAAQEGHAEMV--------ALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 314 (437)
T ss_dssp TCCCHHHHHHHTTCHHHH--------HHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH
T ss_pred CCCCHHHHHHHCCCHHHH--------HHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH
Confidence 334455555555555555 5566666555 455666666666666666666666666665542 23344
Q ss_pred ccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222 217 LYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE 293 (367)
Q Consensus 217 ~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~ 293 (367)
++.++..++.+++++|++.|++++ +. .|+||||+|+..|+.++|++|+++| ++++.+|.+|+|||++|+..|+.+
T Consensus 315 L~~A~~~g~~~~v~~Ll~~gad~n~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~l~~A~~~g~~~ 391 (437)
T 1n11_A 315 LHVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYIS 391 (437)
T ss_dssp HHHHHHSSCSHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred HHHHHHcCcHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHCChHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCcHH
Confidence 555555666667777776665443 44 6667777777777777777777776 677777777777777777666544
No 64
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.85 E-value=7.5e-22 Score=167.43 Aligned_cols=115 Identities=23% Similarity=0.261 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccC
Q psy4222 142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD 221 (367)
Q Consensus 142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~ 221 (367)
...|+||+|+..|+.+.| ++|++.|.++ +.++..|+||||+|+ .|+.+++++|++.+++
T Consensus 11 ~~~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~----------- 69 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEV--------RALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE----------- 69 (156)
T ss_dssp CSTTHHHHHHHHTCHHHH--------HHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-----------
T ss_pred cchHHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-----------
Confidence 346899999999999999 8888889887 577889999999985 8999999999998866
Q ss_pred CCChHHHHHHHHhcCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 222 TPSYIERSDILLDLYVNTPDKALNET-PLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 222 ~~~~~~~v~~Ll~~~~n~~d~~~g~T-pLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++..+. .|+| |||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 70 ---------------~~~~d~-~g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~ 126 (156)
T 1bi7_B 70 ---------------PNCADP-ATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDV 126 (156)
T ss_dssp ---------------CCCCCT-TTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred ---------------CCCcCC-CCCcHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHH
Confidence 555666 7888 999999999999999999998 8999999999999999998888764
No 65
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=2.9e-21 Score=168.28 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=101.6
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD 219 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~ 219 (367)
+.++.|+||.|+..|+.+.+ ++|++ |.++ +.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v--------~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------- 101 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQAL--------SQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD--------- 101 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHH--------HHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred CCCCCCHHHHHHHcCCHHHH--------HHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence 35678999999999999999 78878 7777 67889999999999999999999999998876
Q ss_pred cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222 220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL 289 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~ 289 (367)
++..+...|+||||+|+..|+.+++++|+++| ++++.+|.+|+||||+|+..
T Consensus 102 -----------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~ 153 (183)
T 3deo_A 102 -----------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREI 153 (183)
T ss_dssp -----------------TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHH
T ss_pred -----------------CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHh
Confidence 55555228999999999999999999999999 99999999999999999864
No 66
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.85 E-value=2.8e-21 Score=187.30 Aligned_cols=155 Identities=17% Similarity=0.096 Sum_probs=131.6
Q ss_pred hhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcC---CCccccCCCCCCcHHHHHHHcC---CHHH
Q psy4222 127 LAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG---DFPTILHEGCRYNALHVSTKAV---NPAM 200 (367)
Q Consensus 127 ~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g---~~~~~~~d~~G~TpLh~Aa~~g---~~~i 200 (367)
++..+.. ....+..+.|+||.|+..|+.+++ ++|++.| .++ +..+..|+||||+|+..+ +.++
T Consensus 185 Ll~~ga~--~~~~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~ 253 (373)
T 2fo1_E 185 LMKAGAD--PTIYNKSERSALHQAAANRDFGMM--------VYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVAS 253 (373)
T ss_dssp HHHTTCC--SCCCCTTCCCHHHHHHHTTCHHHH--------HHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHH
T ss_pred HHHCCCC--CcccCCCCCCHHHHHHHCCCHHHH--------HHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHH
Confidence 4444333 334456677999999999999999 8888776 455 567889999999999998 8999
Q ss_pred HHHHHhhcCCCC-------------CcccccccCCCChHHHHHHHHhcC-CCC--CCCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222 201 TEMLLEIIGNPA-------------FTNLLYDSDTPSYIERSDILLDLY-VNT--PDKALNETPLHFAAKFGSVECVKRL 264 (367)
Q Consensus 201 v~~LL~~~~d~~-------------~~~~~~~~~~~~~~~~v~~Ll~~~-~n~--~d~~~g~TpLH~Aa~~g~~~vv~~L 264 (367)
+++|++.+++.+ ...+++.++..++.+++++|++.+ +++ .|. .|+||||+|+..|+.++|++|
T Consensus 254 v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~-~g~TpL~~A~~~g~~~iv~~L 332 (373)
T 2fo1_E 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYL 332 (373)
T ss_dssp HHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC-CCCCHHHHHHHcCCHHHHHHH
Confidence 999999998754 356777888899999999999765 444 466 899999999999999999999
Q ss_pred HhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 265 IGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 265 L~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 333 l~~g-ad~~~~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 333 IQQG-ASVEAVDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp HHTT-CCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred HHcC-CCccCCCCCCCCHHHHHHHcCCHHH
Confidence 9999 9999999999999999999998874
No 67
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=172.11 Aligned_cols=145 Identities=18% Similarity=0.220 Sum_probs=123.0
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----cc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----TN 215 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----~~ 215 (367)
..+.|+||.|+..|+.+++ ++|++.|+++ ...+..|+||||+|+..|+.+++++|++.+++... ..
T Consensus 74 ~~~~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t 144 (240)
T 3eu9_A 74 DLNSTPLHWATRQGHLSMV--------VQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144 (240)
T ss_dssp TTTBCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CcCCChhHHHHHcCCHHHH--------HHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCc
Confidence 3356899999999999999 8899999888 57788999999999999999999999999876432 23
Q ss_pred cccccC-CCChHHHHHHHHhcCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222 216 LLYDSD-TPSYIERSDILLDLYVNTPD--KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL 292 (367)
Q Consensus 216 ~~~~~~-~~~~~~~v~~Ll~~~~n~~d--~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~ 292 (367)
+++.++ .....+++++|++.+++... ...|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.
T Consensus 145 ~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~ 223 (240)
T 3eu9_A 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNV 223 (240)
T ss_dssp HHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCH
T ss_pred HHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcH
Confidence 344443 44457889999999877763 237899999999999999999999999 99999999999999999999988
Q ss_pred HHH
Q psy4222 293 ENY 295 (367)
Q Consensus 293 ~~l 295 (367)
+.+
T Consensus 224 ~~v 226 (240)
T 3eu9_A 224 WMI 226 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 68
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.85 E-value=4.3e-21 Score=174.43 Aligned_cols=130 Identities=23% Similarity=0.174 Sum_probs=100.8
Q ss_pred hhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222 124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEM 203 (367)
Q Consensus 124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~ 203 (367)
+..++..+....+. +...|+||.|+..|+.+.| ++|++.|+++ +.+|..|+||||+||..|+.+++++
T Consensus 21 ~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~ 88 (239)
T 1ycs_B 21 GSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLV--------QRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKF 88 (239)
T ss_dssp -------------------CHHHHHHHHHHTCHHHH--------HHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHhccCCCcccC---chhhHHHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 33444444444443 4567899999999999999 8888888877 6778889999999999999999999
Q ss_pred HHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-hH
Q psy4222 204 LLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK-TP 282 (367)
Q Consensus 204 LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~-TP 282 (367)
||+.+++ ++..|. .|+||||+||..|+.++|++|+++| ++++.+|..|. ||
T Consensus 89 Ll~~ga~--------------------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~ 140 (239)
T 1ycs_B 89 LVQFGVN--------------------------VNAADS-DGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTA 140 (239)
T ss_dssp HHHHTCC--------------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCH
T ss_pred HHHcCCC--------------------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcch
Confidence 9998866 566677 8999999999999999999999999 99999998887 99
Q ss_pred HHHH--hcCCcHH
Q psy4222 283 LDSS--SGLDLLE 293 (367)
Q Consensus 283 L~iA--~~~g~~~ 293 (367)
||+| +..|+.+
T Consensus 141 l~~a~~~~~g~~~ 153 (239)
T 1ycs_B 141 ADKCEEMEEGYTQ 153 (239)
T ss_dssp HHHCCSSSTTCCC
T ss_pred HHHHHHhhhccHH
Confidence 9999 5665544
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.84 E-value=8.6e-21 Score=171.88 Aligned_cols=119 Identities=23% Similarity=0.224 Sum_probs=105.4
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY 218 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~ 218 (367)
.+....|+||.|+..|+.+.| ++|++.|.++ +.+|..|+||||+||..|+.+++++|++.|++
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-------- 79 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVV--------QQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN-------- 79 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHH--------HHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred cccchhHHHHHHHHcCCHHHH--------HHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--------
Confidence 455678999999999999999 8888889888 67899999999999999999999999998876
Q ss_pred ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCChHHHHH--hcCCcHHH
Q psy4222 219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDSS--SGLDLLEN 294 (367)
Q Consensus 219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n-~~G~TPL~iA--~~~g~~~~ 294 (367)
++..|. .|+||||+||..|+.++|++|+++| ++++.++ ..|+||||+| +..|+.+.
T Consensus 80 ------------------~n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~~~~~~~ 138 (229)
T 2vge_A 80 ------------------VNSPDS-HGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYREGYADC 138 (229)
T ss_dssp ------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTSTTHHHH
T ss_pred ------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHhcChHHH
Confidence 566667 8999999999999999999999998 8999886 6999999999 77777664
No 70
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=4e-21 Score=172.15 Aligned_cols=117 Identities=23% Similarity=0.175 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhh-cCCCCCccccccc
Q psy4222 142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI-IGNPAFTNLLYDS 220 (367)
Q Consensus 142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~-~~d~~~~~~~~~~ 220 (367)
.+.|+||.||..|+.+.| ++|++.|.++ +.+|..|+||||+||..|+.+++++|++. +++
T Consensus 72 ~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---------- 132 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWL--------RECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---------- 132 (222)
T ss_dssp EESCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC----------
T ss_pred ccccccccccccCcHHHH--------HHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC----------
Confidence 346899999999999999 8888999888 57889999999999999999999999997 655
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222 221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY 295 (367)
Q Consensus 221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l 295 (367)
++..+. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..+..+.+
T Consensus 133 ----------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l 189 (222)
T 3ehr_A 133 ----------------LNQQNK-LGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLL 189 (222)
T ss_dssp ----------------CCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHH
T ss_pred ----------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHH
Confidence 666677 8999999999999999999999999 99999999999999999988776643
No 71
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=168.77 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=123.1
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC------C
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA------F 213 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~------~ 213 (367)
+..+.++|+.|+..|+++.+ ++|++.|.++ +..+..|.||||+|+..|+.+++++|++.+.+.. .
T Consensus 6 d~~~~~~l~~A~~~g~~~~~--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 76 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERC--------RELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN 76 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTT
T ss_pred ccccchHHHHHHHcCChHHH--------HHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcC
Confidence 44556789999999999999 8888999887 5778889999999999999999999999988643 3
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
..+++.++..++.+++++|++.|++.. +. .|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..+.
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCC
T ss_pred CChhHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCC
Confidence 456677777889999999999987665 55 8999999999999999999999999 8999999999999999995554
No 72
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=2e-20 Score=170.79 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS 220 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~ 220 (367)
..+.|+||.|+..|+.+.| ++|+. |.++ +.+|..|+||||+||..|+.+++++||+.+++
T Consensus 43 ~~g~t~L~~A~~~g~~~~v--------~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------- 102 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQAL--------SQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---------- 102 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHH--------HHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred cCCCCHHHHHHHcCCHHHH--------HHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----------
Confidence 4678999999999999999 88888 8777 67889999999999999999999999998876
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222 221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG 288 (367)
Q Consensus 221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~ 288 (367)
++..+...|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+.
T Consensus 103 ----------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 103 ----------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELARE 153 (244)
T ss_dssp ----------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred ----------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHH
Confidence 55555228999999999999999999999999 9999999999999999984
No 73
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.84 E-value=8.9e-20 Score=173.43 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=121.7
Q ss_pred CCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccc---------cCCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222 134 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI---------LHEGCRYNALHVSTKAVNPAMTEML 204 (367)
Q Consensus 134 ~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~---------~~d~~G~TpLh~Aa~~g~~~iv~~L 204 (367)
.+....+..+.|+||.|+..|+.+.+ ++|+..|+++.. ..+..|.||||+|+..|+.+++++|
T Consensus 116 ~~~~~~d~~g~t~l~~A~~~~~~~~~--------~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~L 187 (337)
T 4g8k_A 116 ADVNECDFYGFTAFMEAAVYGKVKAL--------KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 187 (337)
T ss_dssp CCTTCBCTTCCBHHHHHHHTTCHHHH--------HHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHH
T ss_pred chhhhhccCCCCHHHHHHHcCcHHHH--------HHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHH
Confidence 34445566778999999999999999 777787776632 2345699999999999999999999
Q ss_pred Hhh-cCCCCC------ccccc---ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy4222 205 LEI-IGNPAF------TNLLY---DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQT 272 (367)
Q Consensus 205 L~~-~~d~~~------~~~~~---~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~ 272 (367)
|++ |++.+. ..+++ .........++++|++.|++++ +. .|+||||+|+..|+.++|++|+..+.+++
T Consensus 188 L~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v 266 (337)
T 4g8k_A 188 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEI 266 (337)
T ss_dssp HHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCT
T ss_pred HhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcc
Confidence 975 665432 22222 2234455678999999987665 66 89999999999999999999998755999
Q ss_pred CCCCCCCChHHHHHhcCCcHHH
Q psy4222 273 SVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 273 ~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+.+|.+|+||||+|+..|+.+.
T Consensus 267 n~~d~~G~TpL~~A~~~g~~~i 288 (337)
T 4g8k_A 267 NDTDSDGKTALLLAVELKLKKI 288 (337)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHH
T ss_pred cCcCCCCCCHHHHHHHcCCHHH
Confidence 9999999999999999998874
No 74
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.83 E-value=4e-21 Score=168.83 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=79.5
Q ss_pred hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCC
Q psy4222 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT 222 (367)
Q Consensus 143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~ 222 (367)
+.|+||+|+..|+.+.-.+++ ++|++.|+++ +.++..|+||||+|+..|+.++
T Consensus 38 g~T~Lh~A~~~~~~~~~~~iv----~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~---------------------- 90 (186)
T 3t8k_A 38 KSNILYDVLRNNNDEARYKIS----MFLINKGADI-KSRTKEGTTLFFPLFQGGGNDI---------------------- 90 (186)
T ss_dssp TTTHHHHHTTCSCHHHHHHHH----HHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCH----------------------
T ss_pred CCCHHHHHHHcCCcchHHHHH----HHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcch----------------------
Confidence 345555555555543222222 5555555555 3445555555555555554111
Q ss_pred CChHHHHHHHHhcC--CCCCCCCCCC-cHHHHHHHcC-----CHHHHHHHHh-CCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222 223 PSYIERSDILLDLY--VNTPDKALNE-TPLHFAAKFG-----SVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSGLDLLE 293 (367)
Q Consensus 223 ~~~~~~v~~Ll~~~--~n~~d~~~g~-TpLH~Aa~~g-----~~~vv~~LL~-~g~ad~~~~n~~G~TPL~iA~~~g~~~ 293 (367)
....+++++|++.| +|..|. .|+ ||||+|+..| +.+++++|++ +| ++++.+|..|+||||+|+..++.+
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A~~~~~~~ 168 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFVKRCQKPI 168 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHTTTCHH
T ss_pred hhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHHHHcCCHH
Confidence 00134455555555 444566 898 9999999954 4679999999 88 999999999999999999998876
Q ss_pred H
Q psy4222 294 N 294 (367)
Q Consensus 294 ~ 294 (367)
.
T Consensus 169 ~ 169 (186)
T 3t8k_A 169 A 169 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.83 E-value=7.3e-21 Score=177.64 Aligned_cols=142 Identities=13% Similarity=0.029 Sum_probs=121.6
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||+|+..|+.+.| ++|++.|+++. .. +|+||||+|+..|+.+++++|++.|++.+ .
T Consensus 27 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 95 (285)
T 3kea_A 27 ADVHGHSASYYAIADNNVRLV--------CTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHcCCHHHH--------HHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 445667999999999999999 99999998874 33 48999999999999999999999998643 4
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCC-CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCC
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALN-ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD 290 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g-~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g 290 (367)
..+++.++..++.+++++|++.|+++. +. .| .||||+|+..|+.+++++|+++| ++..-. ..|+||||+|+..|
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-~~g~t~L~~A~~~g 172 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDL-AILLSCIHITIKNG 172 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHHTTCHHHHHHHHTTS-CTTCCC-STHHHHHHHHHHTT
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHhCC-Cccccc-cCCccHHHHHHHcC
Confidence 566777788899999999999987665 55 67 79999999999999999999999 665222 28999999999999
Q ss_pred cHHH
Q psy4222 291 LLEN 294 (367)
Q Consensus 291 ~~~~ 294 (367)
+.+.
T Consensus 173 ~~~~ 176 (285)
T 3kea_A 173 HVDM 176 (285)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 8874
No 76
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=1.2e-19 Score=169.16 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=104.7
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc-----ccCCCCCCcHHHHHHHc---CCHHHHHHHHhhcCCC
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT-----ILHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNP 211 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~-----~~~d~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d~ 211 (367)
....+++|+.|+..|+++.+ ..++..|.+.. ...+..|+||||+|+.. |+.+++++|++.|++
T Consensus 127 ~~~~l~~l~~a~~~~d~~~~--------~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~- 197 (278)
T 1dcq_A 127 TAAKLHSLCEAVKTRDIFGL--------LQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN- 197 (278)
T ss_dssp HHHHHHHHHHHHHTTCHHHH--------HHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-
T ss_pred cchhhhhhhhHhhhcccHHH--------HHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-
Confidence 34567899999999999999 66777776642 23377899999999999 899999999999876
Q ss_pred CCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222 212 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL 291 (367)
Q Consensus 212 ~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~ 291 (367)
+|..|. .|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+
T Consensus 198 -------------------------in~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~ 250 (278)
T 1dcq_A 198 -------------------------LDKQTG-KGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKH 250 (278)
T ss_dssp -------------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred -------------------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCC
Confidence 666777 8999999999999999999999999 9999999999999999999998
Q ss_pred HHH
Q psy4222 292 LEN 294 (367)
Q Consensus 292 ~~~ 294 (367)
.+.
T Consensus 251 ~~~ 253 (278)
T 1dcq_A 251 EHC 253 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 77
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.82 E-value=1.6e-20 Score=161.25 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=111.9
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT 214 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~ 214 (367)
+..+.|+||.|+..|+.++| ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++. ...
T Consensus 33 ~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 103 (172)
T 3v30_A 33 DERGFTPLIWASAFGEIETV--------RFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103 (172)
T ss_dssp CTTSCCHHHHHHHTTCHHHH--------HHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 45567899999999999999 9999999888 678889999999999999999999999998864 345
Q ss_pred ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChH
Q psy4222 215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TP 282 (367)
.+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|++++ +++..+|..|.||
T Consensus 104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~~p 171 (172)
T 3v30_A 104 TPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENHI-LKLFQSNLVPADP 171 (172)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH-HHHSCC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHhCcHHHHHHHHHHH-HHHhcccCCCCCC
Confidence 66777788899999999999987765 55 8999999999999999999999999 8999999999988
No 78
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=170.69 Aligned_cols=169 Identities=20% Similarity=0.155 Sum_probs=127.0
Q ss_pred HHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C-----CCCcccccc
Q psy4222 146 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N-----PAFTNLLYD 219 (367)
Q Consensus 146 ~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d-----~~~~~~~~~ 219 (367)
++|.|+..|+++.++.++.....+++ +.+|..|+||||+|+..|+.+++++||+.++ + .....+++.
T Consensus 79 ~l~~a~~~~~~~~~~~l~~~~~~~~~-------n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 79 DAHPELVRRHLVTFRAMSARLLDYVV-------NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML 151 (276)
T ss_dssp TCCHHHHHHHHHHHHHHCHHHHHHHH-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcC-------cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence 46788999999999666633222222 4568889999999999999999999999997 3 233344444
Q ss_pred cC-----CCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222 220 SD-----TPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL 292 (367)
Q Consensus 220 ~~-----~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~ 292 (367)
++ ..+..+++++|++.|.... +. .|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~ 229 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNINAKASQ-AGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHK 229 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCH
Confidence 43 5688999999999985544 44 7999999999999999999999999 99999999999999999999987
Q ss_pred HHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhccC
Q psy4222 293 ENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVN 333 (367)
Q Consensus 293 ~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~~ 333 (367)
+.+- .++. ..+..++....+..+|++..+..
T Consensus 230 ~iv~-----~Ll~-----~~gad~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 230 EIAG-----LLLA-----VPSCDISLTDRDGSTALMVALDA 260 (276)
T ss_dssp HHHH-----HHHT-----STTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHH-----HHHh-----cCCCCCcCcCCCCCCHHHHHHHc
Confidence 7431 1121 11222333445566777766543
No 79
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=170.88 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=107.1
Q ss_pred CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHhh
Q psy4222 136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL-----HEGCRYNALHVSTKA---VNPAMTEMLLEI 207 (367)
Q Consensus 136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~-----~d~~G~TpLh~Aa~~---g~~~iv~~LL~~ 207 (367)
|..+...+.++|+.|+..|+++.| ++|+..|.++... .+..|+||||+|+.. |+.+++++||+.
T Consensus 144 f~~~~~~~~~~L~~A~~~g~~~~v--------~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ 215 (301)
T 2b0o_E 144 FARRCTPEPQRLWTAICNRDLLSV--------LEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215 (301)
T ss_dssp TSCCCC-CHHHHHHHHHTTCHHHH--------HHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred hhcccCchHHHHhhhhhccCHHHH--------HHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc
Confidence 444445567899999999999999 7777888877432 588899999999997 899999999999
Q ss_pred cCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222 208 IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS 287 (367)
Q Consensus 208 ~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~ 287 (367)
|++ ++..|. .|+||||+|+..|+.++|++||++| ++++.+|..|+||||+|+
T Consensus 216 gad--------------------------vn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~ 267 (301)
T 2b0o_E 216 GGH--------------------------LDAKAA-DGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIAR 267 (301)
T ss_dssp SSC--------------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHH
T ss_pred CCC--------------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence 876 566676 8999999999999999999999999 999999999999999999
Q ss_pred cCCcHHH
Q psy4222 288 GLDLLEN 294 (367)
Q Consensus 288 ~~g~~~~ 294 (367)
..++.+.
T Consensus 268 ~~~~~~i 274 (301)
T 2b0o_E 268 KKHHKEC 274 (301)
T ss_dssp HHTCHHH
T ss_pred HcCCHHH
Confidence 9988764
No 80
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.7e-19 Score=181.61 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=104.4
Q ss_pred CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccC------CCCCCcHHHHHHH---cCCHHHHHHHHh
Q psy4222 136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH------EGCRYNALHVSTK---AVNPAMTEMLLE 206 (367)
Q Consensus 136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~------d~~G~TpLh~Aa~---~g~~~iv~~LL~ 206 (367)
|..+...+.+.||.|+..|+++.| +.|+..|+++ +.. +..|+||||+||. .|+.+++++||+
T Consensus 125 f~~~~~~~~~~L~~A~~~g~~~~v--------~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~ 195 (497)
T 3lvq_E 125 FARRCTPEPQRLWTAICNRDLLSV--------LEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195 (497)
T ss_dssp TSCCCC-CHHHHHHHHHHTCHHHH--------HHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhccCHHHH--------HHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH
Confidence 444334445789999999999999 8888888887 334 7789999999976 899999999999
Q ss_pred hcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222 207 IIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286 (367)
Q Consensus 207 ~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA 286 (367)
.|++ +|..|. .|+||||+||..|+.++|++||++| |+++.+|.+|+||||+|
T Consensus 196 ~ga~--------------------------vn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A 247 (497)
T 3lvq_E 196 NGGH--------------------------LDAKAA-DGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIA 247 (497)
T ss_dssp HSCC--------------------------TTCCCS-SSCCHHHHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHH
T ss_pred cCCC--------------------------CCccCC-CCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence 9977 666677 8999999999999999999999999 99999999999999999
Q ss_pred hcCCcHHH
Q psy4222 287 SGLDLLEN 294 (367)
Q Consensus 287 ~~~g~~~~ 294 (367)
+..|+.+.
T Consensus 248 ~~~~~~~~ 255 (497)
T 3lvq_E 248 RKKHHKEC 255 (497)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 99888774
No 81
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=4e-19 Score=172.27 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=105.0
Q ss_pred HHHHHHHHHc-CCHHHHHHHHhcCChhHHhcCCCccccCC--CCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222 144 LVKLRKLIEK-GNLADVRKLVWDNPRYLVSSGDFPTILHE--GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS 220 (367)
Q Consensus 144 lt~L~~A~~~-G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d--~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~ 220 (367)
-++||.|+.. |+++.| ++|+..|+++ +..+ ..|+||||+|+..|+.+++++||+.+++
T Consensus 200 ~t~L~~Aa~~~g~~~~v--------~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad---------- 260 (368)
T 3jue_A 200 GALLFRASGHPPSLPTM--------ADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---------- 260 (368)
T ss_dssp HHHHHHHTSSSCCHHHH--------HHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred CcHHHHHHHccCCHHHH--------HHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC----------
Confidence 4799999999 999999 8888999888 4566 7899999999999999999999999876
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+|..|. .|+||||+|+..|+.++|++||++| ++++.+|.+|.||||+|+..++.+.
T Consensus 261 ----------------vn~~d~-~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~i 316 (368)
T 3jue_A 261 ----------------VNQADS-AGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADI 316 (368)
T ss_dssp ----------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred ----------------CCCCCC-CCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHH
Confidence 666677 8999999999999999999999999 9999999999999999999998774
No 82
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=3.1e-19 Score=137.91 Aligned_cols=88 Identities=30% Similarity=0.404 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCC
Q psy4222 145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS 224 (367)
Q Consensus 145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~ 224 (367)
|+||.|+..|+.+.+ ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 4 t~L~~A~~~~~~~~v--------~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------------- 60 (93)
T 1n0q_A 4 TPLHLAARNGHLEVV--------KLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------------- 60 (93)
T ss_dssp CHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------------
T ss_pred cHHHHHHHcCCHHHH--------HHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------
Confidence 455555555555555 5555555544 34455555555555555555555555555443
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222 225 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA 268 (367)
Q Consensus 225 ~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g 268 (367)
++..|. .|+||||+|+..|+.+++++|+++|
T Consensus 61 ------------~~~~d~-~g~t~l~~A~~~~~~~~~~~Ll~~g 91 (93)
T 1n0q_A 61 ------------VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG 91 (93)
T ss_dssp ------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 333334 4555555555555555555555555
No 83
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.79 E-value=8.7e-20 Score=165.77 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD 219 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~ 219 (367)
...+.|+||.|+..|+.+.+ +.|++.|+++. . +..|.||||+|+..|+.+++++||+.+++
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~--------~~ll~~g~~~~-~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------- 62 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTG--------SERIAHGMRVK-F-NPLPLALLLDSSLEGEFDLVQRIIYEVDD--------- 62 (239)
T ss_dssp ---------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS---------
T ss_pred CccccccCchhhhhhhHHHH--------HHHhccCCCcc-c-CchhhHHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence 34567999999999999999 88999998873 3 46689999999999999999999998876
Q ss_pred cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++..+. .|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 63 -----------------~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~ 118 (239)
T 1ycs_B 63 -----------------PSLPND-EGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQV 118 (239)
T ss_dssp -----------------CCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred -----------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHH
Confidence 566677 8999999999999999999999999 9999999999999999999998774
No 84
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.1e-19 Score=145.81 Aligned_cols=107 Identities=23% Similarity=0.233 Sum_probs=92.0
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD 219 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~ 219 (367)
+..+.|+||.|+..|+.+.+ ++|++.|.++ +.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 6 d~~g~t~L~~A~~~~~~~~~--------~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------- 67 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEV--------KKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--------- 67 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHH--------HHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---------
T ss_pred CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---------
Confidence 34566899999999999999 8888888887 57788899999999999999999999998766
Q ss_pred cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHH
Q psy4222 220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL 283 (367)
++..+. .|+||||+|+..|+.+++++|+++| ++++.++..|.||-
T Consensus 68 -----------------~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 68 -----------------VNARSK-DGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH 112 (115)
T ss_dssp -----------------TTCCCT-TCCCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred -----------------CcccCC-CCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence 555566 8999999999999999999999999 99999999999884
No 85
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=6.6e-19 Score=136.07 Aligned_cols=83 Identities=33% Similarity=0.477 Sum_probs=75.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222 184 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR 263 (367)
Q Consensus 184 ~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~ 263 (367)
+|+||||+|+..|+.+++++|++.+++ ++..+. .|+||||+|+..|+.+++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------------~n~~d~-~g~t~L~~A~~~~~~~~v~~ 53 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------VNAKDK-NGRTPLHLAARNGHLEVVKL 53 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TSCCHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC--------------------------CcccCC-CCCCHHHHHHHcCCHHHHHH
Confidence 478999999999999999999998876 566677 89999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 264 LIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 264 LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 54 Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~~ 83 (93)
T 1n0q_A 54 LLEAG-ADVNAKDKNGRTPLHLAARNGHLEV 83 (93)
T ss_dssp HHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHcC-CCCCccCCCCCCHHHHHHHcCCHHH
Confidence 99999 9999999999999999999998774
No 86
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.77 E-value=6.5e-19 Score=149.25 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=104.2
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT 214 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~ 214 (367)
+..+.|+||.|+. |+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++. ...
T Consensus 35 ~~~g~t~L~~A~~-~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 104 (162)
T 1ihb_A 35 NGFGRTALQVMKL-GNPEIA--------RRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104 (162)
T ss_dssp CTTSCCHHHHCCS-SCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CccCccHHHHHHc-CcHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 3455689999999 999999 9999999888 578899999999999999999999999998753 345
Q ss_pred ccccccCCCChHHHHHHHHhcCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222 215 NLLYDSDTPSYIERSDILLDLYVN---TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ 271 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~~~n---~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad 271 (367)
.+++.++..++.+++++|++.|.+ ..+. .|+||||+|+..|+.+++++|+++| ||
T Consensus 105 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G-Ad 162 (162)
T 1ihb_A 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANG-AG 162 (162)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTC---
T ss_pred CHHHHHHHcCCHHHHHHHHHccCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHHhC-CC
Confidence 667777888999999999999865 4466 8999999999999999999999999 65
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.77 E-value=4.4e-19 Score=155.71 Aligned_cols=146 Identities=13% Similarity=-0.001 Sum_probs=106.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCH----HHHHHHHhhcCCCCCcccccc
Q psy4222 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNP----AMTEMLLEIIGNPAFTNLLYD 219 (367)
Q Consensus 144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~----~iv~~LL~~~~d~~~~~~~~~ 219 (367)
.++|+.||+.|+++.+ +.++..+.+. ..+..|+||||+|+..|+. +++++||+.|++
T Consensus 7 ~~~l~~Aa~~g~~~~~--------~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad--------- 67 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDF--------LELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD--------- 67 (186)
T ss_dssp CSSHHHHHHHSCHHHH--------HHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---------
T ss_pred ccHHHHHHHcCCHHHH--------HHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---------
Confidence 3579999999999999 4444544332 2236699999999999985 489999998877
Q ss_pred cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC------HHHHHHHHhCCCCCCCCCCCCCC-hHHHHHhcCCcH
Q psy4222 220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS------VECVKRLIGCAKIQTSVRNKEGK-TPLDSSSGLDLL 292 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~------~~vv~~LL~~g~ad~~~~n~~G~-TPL~iA~~~g~~ 292 (367)
+|..+. .|+||||+|+..|+ .++|++|+++| ++++.+|..|+ ||||+|+..+..
T Consensus 68 -----------------vn~~d~-~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~ 128 (186)
T 3t8k_A 68 -----------------IKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVD 128 (186)
T ss_dssp -----------------SSCCCT-TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSC
T ss_pred -----------------CCCCCC-CCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCC
Confidence 666777 99999999999997 68899999999 99999999999 999999986543
Q ss_pred HHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhcc
Q psy4222 293 ENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCV 332 (367)
Q Consensus 293 ~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~ 332 (367)
+.-....+..++. ..|..++.......+|++..+.
T Consensus 129 ~~~~~~iv~~Ll~-----~~gad~~~~d~~G~TpL~~A~~ 163 (186)
T 3t8k_A 129 ENEMIPLYKLIFS-----QSGLQLLIKDKWGLTALEFVKR 163 (186)
T ss_dssp HHHHHHHHHHHHT-----STTCCTTCCCTTSCCHHHHHHT
T ss_pred hhhHHHHHHHHHH-----hcCCCCcccCCCCCCHHHHHHH
Confidence 2111111112222 0223334445566677776654
No 88
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.77 E-value=6.9e-19 Score=152.21 Aligned_cols=130 Identities=13% Similarity=-0.028 Sum_probs=114.8
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++.+ .
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 105 (179)
T 3f6q_A 35 GDDHGFSPLHWACREGRSAVV--------EMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105 (179)
T ss_dssp CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHcCcHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence 445567899999999999999 9999999988 6788999999999999999999999999998643 4
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEG 279 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G 279 (367)
..+++.++..++.+++++|++.|+++. +. .|.||||+|+..++.+++++|+++| ++++..+..+
T Consensus 106 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~L~~~g-~~~~~~~~~~ 171 (179)
T 3f6q_A 106 NVPLHYACFWGQDQVAEDLVANGALVSICNK-YGEMPVDKAKAPLRELLRERAEKMG-QNLNRIPYKD 171 (179)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT-TSCCGGGGSCHHHHHHHHHHHHHTT-CCCSCBCCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCcchhcc-CCCCcHHHHHHHHHHHHHHHHHHhh-cCcccCCccc
Confidence 566777778899999999999997765 56 8999999999999999999999999 8998877655
No 89
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.77 E-value=1.4e-18 Score=151.89 Aligned_cols=114 Identities=22% Similarity=0.151 Sum_probs=101.9
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHH
Q psy4222 179 ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHF 251 (367)
Q Consensus 179 ~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~ 251 (367)
+.+|..|+||||+|+..|+.+++++|++.+++. ....+++.++..++.+++++|++.|+++. +. .|+||||+
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~ 107 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMW 107 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TSCCHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHH
Confidence 345788999999999999999999999998763 34567777888899999999999986665 55 89999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 252 AAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 252 Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+.
T Consensus 108 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~ 149 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEI 149 (192)
T ss_dssp HHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999999 9999999999999999999998764
No 90
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.77 E-value=2.2e-19 Score=171.00 Aligned_cols=141 Identities=16% Similarity=0.063 Sum_probs=110.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcccccc
Q psy4222 145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNLLYD 219 (367)
Q Consensus 145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~~~~ 219 (367)
..+|.|+..+..+.+ ++|+..|.++...+|..|+||||+||..|+.++|++||+.|++. ....+++.
T Consensus 99 ~~~~~a~~~~~~~~~--------~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~ 170 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVN--------DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 170 (327)
T ss_dssp -----CHHHHHHHHH--------HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHH
T ss_pred chhHHHHHhhHHHHH--------HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 456778877777777 88999999984337999999999999999999999999999874 34556677
Q ss_pred cCCCCh---HHHHHHHHhcC---CCCCCCCCCCcHHHHHHH----cCCHHHHHHHHhCCC-------------------C
Q psy4222 220 SDTPSY---IERSDILLDLY---VNTPDKALNETPLHFAAK----FGSVECVKRLIGCAK-------------------I 270 (367)
Q Consensus 220 ~~~~~~---~~~v~~Ll~~~---~n~~d~~~g~TpLH~Aa~----~g~~~vv~~LL~~g~-------------------a 270 (367)
++..++ .++++.|++.+ ++..+. .|+||||+|+. .|+.+++++|++.+. +
T Consensus 171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~ 249 (327)
T 1sw6_A 171 AVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249 (327)
T ss_dssp HHHSSHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------
T ss_pred HHHhcccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccC
Confidence 776666 55666666654 556677 99999999999 899999999998740 2
Q ss_pred -------------------------CCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 271 -------------------------QTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 271 -------------------------d~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
+++.+|..|+||||+|+..|+.+.
T Consensus 250 ~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~ 298 (327)
T 1sw6_A 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 298 (327)
T ss_dssp ----------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred CcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 578888889999999998888764
No 91
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.77 E-value=2.3e-18 Score=147.63 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTN 215 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~ 215 (367)
..+.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++. ....
T Consensus 45 ~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 115 (169)
T 2y1l_E 45 ASGWTPLHLAAFNGHLEIV--------EVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT 115 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 4556899999999999999 8999999888 577889999999999999999999999998764 3456
Q ss_pred cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222 216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCA 268 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g 268 (367)
+++.++..++.+++++|++.|+++. +. .|.||||+|+..|+.+++++|+++|
T Consensus 116 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDK-FGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 6777778899999999999997765 55 8999999999999999999999986
No 92
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.76 E-value=5.3e-19 Score=149.74 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCc-HHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN-ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD 219 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~T-pLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~ 219 (367)
..+.|+||.|+ .|+.+++ ++|++.|+++ +.++..|+| |||+|+..|+.+++++|++.|++
T Consensus 43 ~~g~t~L~~A~-~~~~~~v--------~~Ll~~g~~~-~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~--------- 103 (156)
T 1bi7_B 43 SYGRRPIQVMM-MGSARVA--------ELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR--------- 103 (156)
T ss_dssp SSSCCTTTSSC-TTCHHHH--------HHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC---------
T ss_pred CCCCCHHHHHH-cCCHHHH--------HHHHHcCCCC-CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC---------
Confidence 44568899985 9999999 9999999988 688899999 99999999999999999999876
Q ss_pred cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222 220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS 286 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA 286 (367)
++..+. .|+||||+|+..|+.++|++|+++| ++++.+|..|.||.+-+
T Consensus 104 -----------------~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 104 -----------------LDVRDA-WGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp -----------------SSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred -----------------CcccCC-CCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence 556667 8999999999999999999999999 99999999999998743
No 93
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.75 E-value=2.6e-18 Score=146.29 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=104.0
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.+ .
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 108 (165)
T 3twr_A 38 IEGRQSTPLHFAAGYNRVSVV--------EYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108 (165)
T ss_dssp TTTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred cccCCCCHHHHHHHcChHHHH--------HHHHhcCCCC-CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCC
Confidence 444556899999999999999 9999999888 6788899999999999999999999999988644 4
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCA 268 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g 268 (367)
..+++.+...++.+++++|+++|+++. +. .|+||||+|+. |+.+++++|+++|
T Consensus 109 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 109 FTPLHEAAAKGKYEICKLLLQHGADPTKKNR-DGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCChhHhHhc-CChHHHHHHhhcc
Confidence 456777788899999999999987665 55 89999999877 9999999999998
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.74 E-value=7.1e-18 Score=139.36 Aligned_cols=91 Identities=21% Similarity=0.243 Sum_probs=81.1
Q ss_pred CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHH
Q psy4222 174 GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAA 253 (367)
Q Consensus 174 g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa 253 (367)
|.++ .+|..|+||||+|+..|+.+++++|++.+++ ++..+. .|+||||+||
T Consensus 1 G~d~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------~~~~~~-~g~t~L~~A~ 51 (137)
T 3c5r_A 1 GIDP--FTNHRGETLLHIASIKGDIPSVEYLLQNGSD--------------------------PNVKDH-AGWTPLHEAC 51 (137)
T ss_dssp ---C--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--------------------------SCCCCT-TSCCHHHHHH
T ss_pred CCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCcCCC-CCCCHHHHHH
Confidence 4455 6788999999999999999999999998866 555666 8999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 254 KFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 254 ~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
..|+.+++++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus 52 ~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~ 91 (137)
T 3c5r_A 52 NHGHLKVVELLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDI 91 (137)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHcC-CcccCcCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999 9999999999999999999998874
No 95
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.73 E-value=8.1e-18 Score=143.47 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=106.3
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~ 213 (367)
.+..+.|+||.|+..|+.+.+ ++|++.|.++ +..+..|.||||+|+..|+.+++++|++.+++.+ .
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 102 (167)
T 3v31_A 32 TDEEGFTPLMWAAAHGQIAVV--------EFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102 (167)
T ss_dssp CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred CCCCCCCHHHHHHHCCCHHHH--------HHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCC
Confidence 345567899999999999999 9999999888 5778999999999999999999999999987643 4
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCA 268 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g 268 (367)
..+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|++++
T Consensus 103 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 566777778899999999999987765 55 8999999999999999999999987
No 96
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.73 E-value=1.2e-17 Score=140.56 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN 215 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~ 215 (367)
..+.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.+ ...
T Consensus 32 ~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 102 (153)
T 1awc_B 32 WLGTSPLHLAAQYGHFSTT--------EVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT 102 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHH--------HHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred CCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCC
Confidence 3456899999999999999 8999999888 6788899999999999999999999999988643 455
Q ss_pred cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222 216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRL 264 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~L 264 (367)
+++.++..++.+++++|++.|+++. +. .|+||||+|+..|+.+++++|
T Consensus 103 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 103 ALHWATEHNHQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHh
Confidence 6777778899999999999987665 55 899999999999999999987
No 97
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.73 E-value=2.5e-19 Score=162.21 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=113.3
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC------C
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------A 212 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~------~ 212 (367)
.+..+.|+||+|+..|+.++| ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++. .
T Consensus 50 ~d~~g~tpLh~A~~~g~~~~v--------~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~ 120 (229)
T 2vge_A 50 PNEEGITALHNAICGANYSIV--------DFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120 (229)
T ss_dssp CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSST
T ss_pred CCCCCCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCC
Confidence 345567999999999999999 9999999998 688899999999999999999999999998763 3
Q ss_pred Cccccccc--CCCChHHHHHHHHhcCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC--CCCCCCCCChHHHHH
Q psy4222 213 FTNLLYDS--DTPSYIERSDILLDLYVNT--PDKALNETPLHFAAKFGSVECVKRLIGCAKIQ--TSVRNKEGKTPLDSS 286 (367)
Q Consensus 213 ~~~~~~~~--~~~~~~~~v~~Ll~~~~n~--~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad--~~~~n~~G~TPL~iA 286 (367)
...+++.+ ...++.+++++|++.|+++ .+. .|.||||.++..+ .+++|++.| ++ ++.+|..|+||||+|
T Consensus 121 g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~-~~~~~l~~~~~~~---~~~~ll~~g-a~~~~~~~d~~G~TpL~~A 195 (229)
T 2vge_A 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNS-GAVYALWDYSAEF---GDELSFREG-ESVTVLRRDGPEETDWWWA 195 (229)
T ss_dssp TCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGG-GEEEESSCBCCSS---TTBCCBCTT-CEEEEEESSCTTCSSEEEE
T ss_pred CCCHHHHHHHHhcChHHHHHHHHHcCCCcccccC-CchHHHHHHhhcc---ccccCcccc-ccccccccCCCcccHHHHH
Confidence 44555666 7778888888888877444 355 6778888655444 336777887 67 677888899999999
Q ss_pred hcCCcHHH
Q psy4222 287 SGLDLLEN 294 (367)
Q Consensus 287 ~~~g~~~~ 294 (367)
+..|+.+.
T Consensus 196 ~~~g~~~~ 203 (229)
T 2vge_A 196 ALHGQEGY 203 (229)
T ss_dssp EETTEEEE
T ss_pred HHcCCcce
Confidence 98887653
No 98
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.73 E-value=1.1e-17 Score=140.90 Aligned_cols=117 Identities=17% Similarity=0.099 Sum_probs=100.8
Q ss_pred CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CC
Q psy4222 139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AF 213 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~ 213 (367)
.+..+.|+||. +..|+.+.+ ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++. ..
T Consensus 32 ~~~~g~t~L~~-~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 101 (156)
T 1bd8_A 32 LNRFGKTALQV-MMFGSTAIA--------LELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG 101 (156)
T ss_dssp CCTTSCCHHHH-SCTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred cCCCCCcHHHH-HHcCCHHHH--------HHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence 44556789999 999999999 8888999888 678889999999999999999999999998764 34
Q ss_pred cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGC 267 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~ 267 (367)
..+++.++..++.+++++|++. ++.. +. .|+||||+|+..|+.+++++|+++
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 102 ALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHhChHHHHHHHHhc-cCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhh
Confidence 5667777788899999999987 5554 66 899999999999999999999975
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=161.83 Aligned_cols=110 Identities=21% Similarity=0.193 Sum_probs=92.6
Q ss_pred ChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccc
Q psy4222 140 KSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL 216 (367)
Q Consensus 140 ~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~ 216 (367)
+..+.|+||.|+.. |+++++ ++|++.|+++ +.+|..|+||||+|+..|+.+++++||+.|++
T Consensus 187 ~~~g~t~Lh~A~~~~~~~~~~iv--------~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad------ 251 (301)
T 2b0o_E 187 QAPEELVLHLAVKVANQASLPLV--------DFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL------ 251 (301)
T ss_dssp CSCEECHHHHHHHTCCTTTHHHH--------HHHHHHSSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred CCCCccHHHHHHHhcccCcHHHH--------HHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence 45677999999997 899999 9999999988 67899999999999999999999999999877
Q ss_pred ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222 217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL 292 (367)
Q Consensus 217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~ 292 (367)
++..|. .|+||||+|+..|+.+++++|+++| ++ .|.||||+|+..|+-
T Consensus 252 --------------------~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 252 --------------------VGTVNE-AGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp --------------------CSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC--------
T ss_pred --------------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHhcCCc
Confidence 556677 8999999999999999999999999 65 589999999988763
No 100
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.71 E-value=2.9e-19 Score=173.82 Aligned_cols=133 Identities=11% Similarity=-0.008 Sum_probs=110.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc--ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-------CCc
Q psy4222 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT--ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-------AFT 214 (367)
Q Consensus 144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~--~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-------~~~ 214 (367)
.|+||.|++.|+.+.| ++|++.|+... ...+..|.||||+||..|+.++|++|++.+++. ...
T Consensus 93 ~T~Lh~Aa~~G~~e~v--------~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~ 164 (376)
T 2aja_A 93 EVICFVAAITGCSSAL--------DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 164 (376)
T ss_dssp HHHHHHHHHHCCHHHH--------HHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred CCHHHHHHHcCCHHHH--------HHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCC
Confidence 4999999999999999 88888886221 122456889999999999999999999999641 115
Q ss_pred ccccccCCCChHHHHHHHHhcCCCC----CCCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222 215 NLLYDSDTPSYIERSDILLDLYVNT----PDKALNETPLHFAA-KFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL 289 (367)
Q Consensus 215 ~~~~~~~~~~~~~~v~~Ll~~~~n~----~d~~~g~TpLH~Aa-~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~ 289 (367)
.+++.++..|+.+++++|++.|++. .+. .|+||||+|| ..|+.++|++|+++| ++ |.||||+|+..
T Consensus 165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a~-------~~taL~~Aa~~ 235 (376)
T 2aja_A 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCP-VM-------LAYAEIHEFEY 235 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSH-HH-------HHHHHHCTTTT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCC-Cc-------cchHHHHHHHC
Confidence 5778888899999999999999874 344 6899999999 999999999999987 42 89999999999
Q ss_pred CcHH
Q psy4222 290 DLLE 293 (367)
Q Consensus 290 g~~~ 293 (367)
|+.+
T Consensus 236 g~~e 239 (376)
T 2aja_A 236 GEKY 239 (376)
T ss_dssp TTTT
T ss_pred CCHH
Confidence 8876
No 101
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=2.6e-17 Score=131.33 Aligned_cols=86 Identities=27% Similarity=0.261 Sum_probs=78.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy4222 181 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 260 (367)
Q Consensus 181 ~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~v 260 (367)
.+.+|.|+||+|+..|+.+++++|++.+++ ++..|. .|+||||+||..|+.++
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------i~~~d~-~g~tpLh~A~~~~~~~~ 72 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGAD--------------------------VAAKDK-NGSTPLHLAARNGHLEV 72 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TCCCHHHHHHHTTCHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCccCC-CCCCHHHHHHHcCCHHH
Confidence 377899999999999999999999998866 566666 89999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 261 VKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 261 v~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus 73 v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~ 105 (110)
T 2zgd_A 73 VKLLLEAG-ADVXAQDKFGKTAFDISIDNGNEDL 105 (110)
T ss_dssp HHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHcC-CCccccccCCCcHHHHHHHcCCHHH
Confidence 99999999 9999999999999999999988764
No 102
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.70 E-value=3.9e-17 Score=130.73 Aligned_cols=87 Identities=30% Similarity=0.300 Sum_probs=80.1
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHH
Q psy4222 180 LHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 259 (367)
Q Consensus 180 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~ 259 (367)
++|..|+||||+|+..|+.+++++|++.+++ ++..+. .|+||||+|+..|+.+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------~~~~d~-~g~t~L~~A~~~~~~~ 56 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--------------------------VNARSK-DGNTPLHLAAKNGHAE 56 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC--------------------------SSCCCS-SSCCTTHHHHTTTCHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCCcCC-CCCCHHHHHHHcCcHH
Confidence 5688999999999999999999999998766 556666 8999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 260 CVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 260 vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus 57 ~~~~Ll~~g-~~~~~~d~~g~tpl~~A~~~~~~~~ 90 (115)
T 2l6b_A 57 IVKLLLAKG-ADVNARSKDGNTPEHLAKKNGHHEI 90 (115)
T ss_dssp HHHHHTTTT-CCTTCCCTTCCCTTHHHHTTTCHHH
T ss_pred HHHHHHHcC-CCCcccCCCCCCHHHHHHHCCCHHH
Confidence 999999999 9999999999999999999998764
No 103
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.69 E-value=1.1e-16 Score=132.09 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS 220 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~ 220 (367)
..+.|+||.|+..|+.+++ ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 45 ~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 105 (136)
T 2jab_A 45 EYGLTPLYLATAHGHLEIV--------EVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---------- 105 (136)
T ss_dssp TTSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred CCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence 4456899999999999999 9999999888 57888999999999999999999999998866
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222 221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA 268 (367)
Q Consensus 221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g 268 (367)
++..+. .|+||||+|+..|+.+++++|+++|
T Consensus 106 ----------------~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 106 ----------------VNAQDK-FGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp ----------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred ----------------CcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 555666 8999999999999999999999986
No 104
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.68 E-value=2.3e-17 Score=136.37 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCC-CCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGC-RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD 219 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~-G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~ 219 (367)
..+.|+||.|+. |+.+++ ++|++.|+++ +.++.. |+||||+|+..|+.+++++|++.+++
T Consensus 43 ~~g~t~L~~A~~-~~~~~v--------~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------- 103 (136)
T 1d9s_A 43 RFGRRPIQVMMM-GSAQVA--------ELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR--------- 103 (136)
T ss_dssp TTCCTTTTTSTT-SCHHHH--------HHHHHHTCCS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC---------
T ss_pred CCCCCHHHHHHc-CCHHHH--------HHHHHCCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence 455689999999 999999 9999999988 678888 99999999999999999999998876
Q ss_pred cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222 220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ 271 (367)
Q Consensus 220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad 271 (367)
++..+. .|+||||+|+..|+.+++++|+++| +|
T Consensus 104 -----------------~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~G-ad 136 (136)
T 1d9s_A 104 -----------------LDVCDA-WGRLPVDLAEEQGHRDIARYLHAAT-GD 136 (136)
T ss_dssp -----------------CCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHH-CC
T ss_pred -----------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 556667 8999999999999999999999998 65
No 105
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.67 E-value=1.7e-16 Score=128.70 Aligned_cols=85 Identities=19% Similarity=0.117 Sum_probs=76.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy4222 182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 261 (367)
Q Consensus 182 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv 261 (367)
+..|.||||+|+..|+.+++++|++.+.+ ++..+. .|+||||+||..|+.++|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~v 56 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED--------------------------VNRTLE-GGRKPLHYAADCGQLEIL 56 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC--------------------------TTSCCT-TSSCHHHHHHHTTCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC--------------------------cCccCC-CCCcHHHHHHHcCCHHHH
Confidence 45688999999999999999999998866 555666 899999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222 262 KRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 262 ~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ 294 (367)
++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus 57 ~~Ll~~g-~~~~~~d~~g~tpL~~A~~~~~~~~ 88 (123)
T 3aaa_C 57 EFLLLKG-ADINAPDKHHITPLLSAVYEGHVSC 88 (123)
T ss_dssp HHHHTTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHH
Confidence 9999999 9999999999999999999998764
No 106
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=3.5e-16 Score=124.70 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=80.4
Q ss_pred CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccc
Q psy4222 138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL 217 (367)
Q Consensus 138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~ 217 (367)
..+.++.|+||.|+..|+.+.+ ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~------- 82 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEV--------RILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD------- 82 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------
T ss_pred ccCCccchHHHHHHHcCCHHHH--------HHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence 3556778999999999999999 8899999888 57789999999999999999999999998876
Q ss_pred cccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222 218 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL 264 (367)
Q Consensus 218 ~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~L 264 (367)
++..+. .|+||||+|+..|+.+++++|
T Consensus 83 -------------------~~~~d~-~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 83 -------------------VXAQDK-FGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp -------------------TTCCCT-TSCCHHHHHHHHTCHHHHHHH
T ss_pred -------------------cccccc-CCCcHHHHHHHcCCHHHHHHh
Confidence 556666 899999999999999999987
No 107
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.67 E-value=2.7e-16 Score=126.67 Aligned_cols=94 Identities=28% Similarity=0.362 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS 220 (367)
Q Consensus 141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~ 220 (367)
..+.|+||.|+..|+.+.+ ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++
T Consensus 33 ~~g~t~L~~A~~~~~~~~~--------~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~---------- 93 (126)
T 1n0r_A 33 KNGRTPLHLAARNGHLEVV--------KLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---------- 93 (126)
T ss_dssp TTSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred CCCCcHHHHHHHcCcHHHH--------HHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHHcCCC----------
Confidence 4456899999999999999 9999999888 57888999999999999999999999998866
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222 221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ 271 (367)
Q Consensus 221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad 271 (367)
++..+. .|+||||+|+..|+.+++++|+++| ||
T Consensus 94 ----------------~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G-ad 126 (126)
T 1n0r_A 94 ----------------VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG-AY 126 (126)
T ss_dssp ----------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHT-CC
T ss_pred ----------------CcccCC-CCCCHHHHHHHcCcHHHHHHHHHcC-CC
Confidence 455566 8999999999999999999999999 65
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=2.5e-16 Score=158.40 Aligned_cols=105 Identities=23% Similarity=0.237 Sum_probs=86.5
Q ss_pred ChhhHHHHHHHHH---cCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccc
Q psy4222 140 KSQELVKLRKLIE---KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL 216 (367)
Q Consensus 140 ~~~~lt~L~~A~~---~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~ 216 (367)
+..+.|+||+||. .|+.++| ++|++.|+++ +.+|..|+||||+||..|+.+++++||+.|++
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v--------~~Ll~~ga~v-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~------ 232 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLV--------DFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL------ 232 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHH--------HHHHHHSCCT-TCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCC------
T ss_pred ccccchHHHHHHHhcccccHHHH--------HHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------
Confidence 4456799999976 9999999 9999999998 68899999999999999999999999999987
Q ss_pred ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222 217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS 287 (367)
Q Consensus 217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~ 287 (367)
++..|. .|+||||+|+..|+.+++++|+++| ++++. ||+|+++
T Consensus 233 --------------------~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~------~~~h~~~ 275 (497)
T 3lvq_E 233 --------------------VGTVNE-AGETALDIARKKHHKECEELLEQAQ-AGTFA------FPLHVDY 275 (497)
T ss_dssp --------------------CSCCCT-TCCCHHHHHHHTTCHHHHHHHHHTC-C-----------------
T ss_pred --------------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhC-CCCCC------Ccceeec
Confidence 666777 9999999999999999999999999 88877 4666655
No 109
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.64 E-value=7.4e-17 Score=140.22 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=76.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy4222 182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 261 (367)
Q Consensus 182 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv 261 (367)
+..|.||||+|+..|+.+++++||+ +++ ++..+. .|+||||+||..|+.++|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--------------------------~~~~d~-~g~t~L~~A~~~~~~~~v 92 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD--------------------------VDAVDE-NGRTALLFVAGLGSDKCV 92 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC--------------------------TTCCCT-TSCCHHHHHHHHTCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC--------------------------CCCcCC-CCCCHHHHHHHcCCHHHH
Confidence 4568999999999999999999998 655 566677 899999999999999999
Q ss_pred HHHHhCCCCCCCCCC-CCCChHHHHHhcCCcHHH
Q psy4222 262 KRLIGCAKIQTSVRN-KEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 262 ~~LL~~g~ad~~~~n-~~G~TPL~iA~~~g~~~~ 294 (367)
++|+++| ++++.+| ..|+||||+|+..|+.+.
T Consensus 93 ~~Ll~~g-a~~~~~~~~~g~tpL~~A~~~~~~~~ 125 (183)
T 3deo_A 93 RLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEV 125 (183)
T ss_dssp HHHHHTT-CCTTCCCSSSSCCHHHHHHHTTCHHH
T ss_pred HHHHHcC-CCCCcCCCCCCCCHHHHHHhcCcHHH
Confidence 9999999 9999998 899999999999998874
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.63 E-value=5.4e-16 Score=144.43 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=87.2
Q ss_pred CChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcc
Q psy4222 139 LKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN 215 (367)
Q Consensus 139 ~~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~ 215 (367)
.+..+.|+||.|+.. |+.+++ ++|++.|+++ +.+|..|+||||+|+..|+.+++++||+.|++
T Consensus 165 ~~~~g~t~Lh~A~~~~~~~~~~~v--------~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad----- 230 (278)
T 1dcq_A 165 GHEPDETALHLAVRSVDRTSLHIV--------DFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS----- 230 (278)
T ss_dssp CSSTTCBHHHHHHHHCCTTTHHHH--------HHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred cccCCCCcchHHHHhcccchHHHH--------HHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence 345678999999999 899999 9999999998 68899999999999999999999999999877
Q ss_pred cccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222 216 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ 271 (367)
Q Consensus 216 ~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad 271 (367)
++..|. .|+||||+|+..|+.++|++|+++| ++
T Consensus 231 ---------------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~ 263 (278)
T 1dcq_A 231 ---------------------IEIANE-SGETPLDIAKRLKHEHCEELLTQAL-SG 263 (278)
T ss_dssp ---------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHH-TT
T ss_pred ---------------------CCCccC-CCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 566677 8999999999999999999999999 53
No 111
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.63 E-value=2.6e-17 Score=160.04 Aligned_cols=133 Identities=11% Similarity=-0.011 Sum_probs=110.3
Q ss_pred hHHHHHHHHH-cCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC--------CC
Q psy4222 143 ELVKLRKLIE-KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP--------AF 213 (367)
Q Consensus 143 ~lt~L~~A~~-~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~--------~~ 213 (367)
+++.|+.|.. .++.+.+ ++++..|.+. .||||+||+.|+.+++++|++.++.. ..
T Consensus 65 ~ll~~~~a~~~~~~~~~~--------~~l~~~g~~~--------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~ 128 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLW--------SDAHKKGIKS--------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 128 (376)
T ss_dssp HHHHHHHHHTTTTCTTHH--------HHHHHHTCCH--------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHH
T ss_pred HHHHHHHHHhcCCCHHHH--------HHHHHcCCCc--------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCC
Confidence 4567887776 5778888 7887777543 59999999999999999999998722 12
Q ss_pred cccccccCCCChHHHHHHHHhcCCC-----CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCCChHHHHH
Q psy4222 214 TNLLYDSDTPSYIERSDILLDLYVN-----TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV--RNKEGKTPLDSS 286 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~Ll~~~~n-----~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~--~n~~G~TPL~iA 286 (367)
..+++.++..|+.+++++|++.|++ +.++ + +||||+||..|+.++|++|+++| ++++. +|..|.||||+|
T Consensus 129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~TpL~~A 205 (376)
T 2aja_A 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWA 205 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHHHcC-CccchhccCCCCCCHHHHH
Confidence 3467788889999999999999964 4444 3 99999999999999999999999 89887 899999999999
Q ss_pred h-cCCcHHH
Q psy4222 287 S-GLDLLEN 294 (367)
Q Consensus 287 ~-~~g~~~~ 294 (367)
+ ..|+.+.
T Consensus 206 a~~~G~~ei 214 (376)
T 2aja_A 206 AVGRGHHNV 214 (376)
T ss_dssp HSTTCCHHH
T ss_pred HHHCCCHHH
Confidence 9 9999874
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.62 E-value=9.8e-16 Score=148.42 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=93.6
Q ss_pred hhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222 124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEM 203 (367)
Q Consensus 124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~ 203 (367)
+..++..+...+.......+.|+||+|+..|+.++| ++|++.|+++ +.+|..|+||||+|+..|+.+++++
T Consensus 216 v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv--------~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~ 286 (368)
T 3jue_A 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLAC--------EFLLQNGANV-NQADSAGRGPLHHATILGHTGLACL 286 (368)
T ss_dssp HHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCcHHHHHH
Confidence 333455555555555446778999999999999999 9999999998 6889999999999999999999999
Q ss_pred HHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--CCCCCCCCCCCh
Q psy4222 204 LLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK--IQTSVRNKEGKT 281 (367)
Q Consensus 204 LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~--ad~~~~n~~G~T 281 (367)
||+.|++ ++..|. .|+||||+|+..|+.++|++|+..+. ++....+..+.|
T Consensus 287 LL~~Gad--------------------------~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t 339 (368)
T 3jue_A 287 FLKRGAD--------------------------LGARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDET 339 (368)
T ss_dssp HHHTTCC--------------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC--------------
T ss_pred HHHCcCC--------------------------CCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCC
Confidence 9999877 566677 89999999999999999999998762 334456678899
Q ss_pred HHHHHhcC
Q psy4222 282 PLDSSSGL 289 (367)
Q Consensus 282 PL~iA~~~ 289 (367)
+++++...
T Consensus 340 ~l~i~~~~ 347 (368)
T 3jue_A 340 YLDIFRDF 347 (368)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99887644
No 113
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.59 E-value=7.3e-16 Score=137.68 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=78.8
Q ss_pred ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhc-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY 218 (367)
Q Consensus 140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~-g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~ 218 (367)
+..+.|+||+||..|+.++| ++|+.. |+++ +.+|..|+||||+|+..|+.+++++||+.|++
T Consensus 103 ~~~g~t~L~~A~~~~~~~~v--------~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------- 165 (222)
T 3ehr_A 103 DKAGSTALYWACHGGHKDIV--------EMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-------- 165 (222)
T ss_dssp CTTSCCHHHHHHHTTCHHHH--------HHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--------
T ss_pred CCCCCCHHHHHHHcCCHHHH--------HHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence 34567899999999999999 899888 8887 68899999999999999999999999999877
Q ss_pred ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Q psy4222 219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK 280 (367)
Q Consensus 219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~ 280 (367)
++..+. .|+||||+|+..|+.++++.|+..+ ++.+.+|.+|.
T Consensus 166 ------------------~~~~~~-~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~~ 207 (222)
T 3ehr_A 166 ------------------TDLRNI-EKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDY 207 (222)
T ss_dssp ------------------SCCCCT-TSCCHHHHCCSHHHHHHHC------------------
T ss_pred ------------------CccccC-CCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhhh
Confidence 556667 8999999999999999999999999 88888887654
No 114
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.57 E-value=5.9e-15 Score=134.38 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=76.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy4222 182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 261 (367)
Q Consensus 182 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv 261 (367)
+..|.||||+|++.|+.+++++||+ +++ ++..+. .|+||||+||..|+.++|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--------------------------~~~~d~-~g~t~L~~A~~~g~~~~v 93 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRD--------------------------VDAVDE-NGRTALLFVAGLGSDKCV 93 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCC--------------------------TTCBCT-TSCBHHHHHHHHTCHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCC--------------------------CCCcCC-CCCCHHHHHHHCCCHHHH
Confidence 4568999999999999999999998 655 566677 899999999999999999
Q ss_pred HHHHhCCCCCCCCCC-CCCChHHHHHhcCCcHHH
Q psy4222 262 KRLIGCAKIQTSVRN-KEGKTPLDSSSGLDLLEN 294 (367)
Q Consensus 262 ~~LL~~g~ad~~~~n-~~G~TPL~iA~~~g~~~~ 294 (367)
++|+++| ++++.+| ..|+||||+|+..|+.+.
T Consensus 94 ~~Ll~~g-a~~~~~~~~~g~t~L~~A~~~g~~~~ 126 (244)
T 3ui2_A 94 RLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEV 126 (244)
T ss_dssp HHHHHTT-CCTTCCCSSSCCCHHHHHHHTTCHHH
T ss_pred HHHHHcC-CCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 9999999 9999998 889999999999998874
No 115
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=98.72 E-value=6.5e-09 Score=71.16 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=44.1
Q ss_pred ccceEEecccccCCCCCCccCccccccccHHHHHHHHHHcccccccCCCCHHHHHHHHhc
Q psy4222 35 GIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYH 94 (367)
Q Consensus 35 ~~~y~v~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~k~~k~ar~k~F~~~~~a~~~~~~ 94 (367)
..||+|+.+ .+++||++|.||++.++..+++++|+|.+.+||+.|+..
T Consensus 3 ~kyYaV~~G------------~~~GIy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 3 HMFYAVRRG------------RKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp CCEEEEEES------------SSCEEESSHHHHHHHHTTCTTCEEEEESSHHHHHHHHHC
T ss_pred CCEEEEEeC------------CCCceECCHHHHHHHhcCCCCCccCCCCCHHHHHHHHHh
Confidence 469999987 456999999999999999999999999999999999984
No 116
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=98.70 E-value=4.2e-09 Score=70.26 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=42.2
Q ss_pred cceEEecccccCCCCCCccCccccccccHHHHHHHHHHcccccccCCCCHHHHHHHHh
Q psy4222 36 IYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAY 93 (367)
Q Consensus 36 ~~y~v~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~k~~k~ar~k~F~~~~~a~~~~~ 93 (367)
.||+|+.+ .+++||++|.||++.++..+++++|+|.+.+||+.|+.
T Consensus 2 kyYaV~~G------------~~~GIy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l~ 47 (47)
T 1qhk_A 2 NFYAVRKG------------RETGIYNTWNECKNQVDGYGGAIYKKFNSYEQAKSFLG 47 (47)
T ss_dssp EEEEECSS------------SSCEEEEEHHHHHHHSSSCSSCCCEEESCHHHHHHHHC
T ss_pred CEEEEEeC------------CCCceECCHHHHHHHhcCCCCCccCCCCCHHHHHHHhC
Confidence 59999986 45699999999999999999999999999999999973
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=24.83 E-value=2.8e+02 Score=22.93 Aligned_cols=108 Identities=13% Similarity=0.092 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHH-HHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222 142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNAL-HVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS 220 (367)
Q Consensus 142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpL-h~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~ 220 (367)
+..+.|-.|++.|+++...++. +-+ .+ ..-|.-| ..|...|+.++++.-..+..|-+...++|..
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a----~~l----~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~ 72 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEA----KKL----ND------SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLV 72 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH----HHH----CC------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHH----HHh----CC------HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHH
Confidence 3457899999999999997766 222 11 1123333 5677789999999888887775444444433
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHHhCC
Q psy4222 221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSV-ECVKRLIGCA 268 (367)
Q Consensus 221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~-~vv~~LL~~g 268 (367)
. |..+-++.+.+.- ...+ .-+.+.|.+-..|.+ +++++|++.|
T Consensus 73 t--g~~e~L~kla~iA--~~~g-~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 73 T--GDVNKLSKMQNIA--QTRE-DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp H--TCHHHHHHHHHHH--HHTT-CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred h--CCHHHHHHHHHHH--HHCc-cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 1 2222222221110 0011 334566777677775 6788888876
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=22.70 E-value=1.9e+02 Score=27.66 Aligned_cols=63 Identities=17% Similarity=0.063 Sum_probs=43.8
Q ss_pred HHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222 192 STKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC 267 (367)
Q Consensus 192 Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~ 267 (367)
.+..|+...|+.-+..|+|+.-.-. . -+..+-...+.-| -|.|-+|+|.++.+-+++-.|+..
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt--------~---~e~~lln~~~af~--~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLT--------A---DEVRLLNRPSAFD--VGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCC--------H---HHHHHHCCTTTCC--TTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccC--------H---HHHHHhCCCcccc--cCchhhhhhhhhhhhhHHHHhhhc
Confidence 3457999999999999988643211 1 1112222233322 699999999999999999999974
No 119
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=21.71 E-value=1.1e+02 Score=29.10 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHHHcCCHHHHHHHHhcCChhHHhcCCCcccc-------------CCCCCCcHHHHHHHcCCHHHHHHHHhhc
Q psy4222 149 KLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL-------------HEGCRYNALHVSTKAVNPAMTEMLLEII 208 (367)
Q Consensus 149 ~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~-------------~d~~G~TpLh~Aa~~g~~~iv~~LL~~~ 208 (367)
..+..||...|...+ .+|.++... .-.-|.|.+|+|.+..+.+++..|+..+
T Consensus 28 ~gv~e~~~~~ve~y~--------~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~~ 92 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYK--------SSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTEV 92 (454)
T ss_dssp HHHHHTCHHHHHHHH--------TTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHH--------hcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhcc
Confidence 345679999994443 444333211 1234999999999999999999999754
Done!