RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4222
(367 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 53.9 bits (130), Expect = 4e-09
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 186 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--Y 236
LH++ + + ++LLE + + D TP ++E +LL+
Sbjct: 8 RTPLHLAASNGHLEVVKLLLENGADVNAKD--NDGRTPLHLAAKNGHLEIVKLLLEKGAD 65
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
VN DK TPLH AA+ G+++ VK L+ + R+K+G+TPL
Sbjct: 66 VNARDK-DGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLH 111
Score = 42.8 bits (101), Expect = 3e-05
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 151 IEKGNLADVRKLVWDNPRYLVSSGDFPTIL-HEGCRYNALHVSTKAVNPAMTEMLLEIIG 209
G+L V+ L+ +G ++G LH++ K + + ++LLE
Sbjct: 15 ASNGHLEVVK--------LLLENGADVNAKDNDG--RTPLHLAAKNGHLEIVKLLLEKGA 64
Query: 210 NPAFTNLLYDSDTP-------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVEC 260
+ + D +TP ++ +LL VN DK TPLH AAK G +E
Sbjct: 65 DVNARD--KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD-GRTPLHLAAKNGHLEV 121
Query: 261 VKRLI 265
VK L+
Sbjct: 122 VKLLL 126
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 42.0 bits (99), Expect = 1e-05
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
+N D N TPLH AAK+G++E V+ L+ + ++R+ +G T LD
Sbjct: 9 LNATDGNGN-TPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALD 54
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 41.9 bits (99), Expect = 3e-05
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 245 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
+T LH AA+ G++E VK L+ A + ++K+G T L
Sbjct: 28 TDTALHLAARNGNLEIVKLLLEHGADVNA--KDKDGNTAL 65
Score = 38.8 bits (91), Expect = 4e-04
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 36/104 (34%)
Query: 171 VSSGDFPTI---LHEGCRYN------ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD 221
+G+ + L +G N ALH++ + N + ++LLE + +D
Sbjct: 5 AKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLE-----------HGAD 53
Query: 222 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 265
VN DK T LH AA+ G++E VK L+
Sbjct: 54 ---------------VNAKDK-DGNTALHLAARNGNLEIVKLLL 81
Score = 30.3 bits (69), Expect = 0.39
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 249 LHFAAKFGSVECVKRLI 265
LH AAK G++E VK L+
Sbjct: 1 LHLAAKNGNLELVKLLL 17
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 35.7 bits (83), Expect = 0.002
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
T LH AA G +E VK L+ + + +++G T L
Sbjct: 3 TALHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALH 39
Score = 34.5 bits (80), Expect = 0.004
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
+N D+ T LH AA+ G++E +K L+
Sbjct: 27 INRTDED-GNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 246 ETPLHFAAKFGSVECVKRLI 265
TPLH AA+ G +E VK L+
Sbjct: 3 NTPLHLAARNGHLEVVKLLL 22
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 31.4 bits (72), Expect = 0.043
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 245 NETPLHFAAKFGSVECVKRLI 265
TPLH AA+ G++E VK L+
Sbjct: 2 GRTPLHLAAENGNLEVVKLLL 22
>gnl|CDD|219782 pfam08292, RNA_pol_Rbc25, RNA polymerase III subunit Rpc25.
Rpc25 is a strongly conserved subunit of RNA polymerase
III and has homology to Rpa43 in RNA polymerase I, Rpb7
in RNA polymerase II and the archaeal RpoE subunit.
Rpc25 is required for transcription initiation and is
not essential for the elongating properties of RNA
polymerase III.
Length = 121
Score = 33.5 bits (77), Expect = 0.048
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 32 TEEGI-----YFA-VYIPSELLGGYEN-EFSECERVF--DNKEEALLFIKKNKKIRFK 80
+ EGI +F ++IP + L E EF E E+ + + EE L+ ++IRF+
Sbjct: 15 SAEGIKVSLGFFDDIFIPPDNL--PEPSEFDEEEQAWVWEYDEETELYFDVGEEIRFR 70
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 34.9 bits (80), Expect = 0.053
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 236 YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY 295
Y N D +PLH AA++G C+K LI + K G TP
Sbjct: 182 YANVKDNNGE-SPLHNAAEYGDYACIKLLIDHGN-HIMNKCKNGFTP------------- 226
Query: 296 LHTKLLDTVAAKKDETNGNTVDQPSVDMISPI 327
LH ++ +A + N +++ +D +P+
Sbjct: 227 LHNAIIHNRSAIELLINNASINDQDIDGSTPL 258
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 30.7 bits (70), Expect = 0.062
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 245 NETPLHFAAKFGSVECVKRLI 265
TPLH AA+ G++E VK L+
Sbjct: 2 GNTPLHLAARNGNLELVKLLL 22
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 34.3 bits (79), Expect = 0.11
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 226 IERSDILLDLYV--NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
R + LL V N D TPLH+A + E VK L+ ++ NK G TPL
Sbjct: 172 KNRVNYLLSYGVPINIKDV-YGFTPLHYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPL 229
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 33.4 bits (76), Expect = 0.16
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 27/135 (20%)
Query: 204 LLEIIGNPAFTNLLYDSDTPSYIE---RSDILLDLY--------VNTPDKALNETPLHFA 252
LL+I NP F +YD +P + R + L V PD E+ LH A
Sbjct: 21 LLDIGINPNFE--IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI---ESELHDA 75
Query: 253 AKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETN 312
+ G V+ V+ L+ K V K+G TPL ++ L L+ ++ + A+ +
Sbjct: 76 VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLD------IMKLLIARGADP- 128
Query: 313 GNTVDQPSVDMISPI 327
D P+ D SP+
Sbjct: 129 ----DIPNTDKFSPL 139
>gnl|CDD|215883 pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.
Length = 502
Score = 33.2 bits (76), Expect = 0.19
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 116 ADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRY 169
ADP +++ + SP Q +L+K +E G L W +P Y
Sbjct: 87 ADPKKASELAQSVSPWPKSPGYFKAVQN--RLKKFVESGQLGIFTNAYWGHPAY 138
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 33.3 bits (76), Expect = 0.21
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 214 TNLLYDSDTPSY-IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQT 272
T L Y ++ + + VN PDK N +PLH A K + V L+ T
Sbjct: 170 TALHYATENKDQRLTELLLSYGANVNIPDKT-NNSPLHHAVKHYNKPIVHILLENGA-ST 227
Query: 273 SVRNKEGKTPLDSSSGLDLLENYLHTKLL 301
R+K G TPL S G ++Y KLL
Sbjct: 228 DARDKCGNTPLHISVG--YCKDYDILKLL 254
>gnl|CDD|201924 pfam01693, Cauli_VI, Caulimovirus viroplasmin. This family
consists of various caulimovirus viroplasmin proteins.
The viroplasmin protein is encoded by gene VI and is
the main component of viral inclusion bodies or
viroplasms. Inclusions are the site of viral assembly,
DNA synthesis and accumulation. Two domains exist
within gene VI corresponding approximately to the 5'
third and middle third of gene VI, these influence
systemic infection in a light-dependent manner.
Length = 43
Score = 29.4 bits (67), Expect = 0.29
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 60 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 91
++ + EE +K +KSF ++A+ F
Sbjct: 12 IYTSWEECKKQVKGFPGAIYKSFSTKEEAEAF 43
>gnl|CDD|182281 PRK10170, PRK10170, hydrogenase 1 large subunit; Provisional.
Length = 597
Score = 32.7 bits (74), Expect = 0.36
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 116 ADPSALPQMS-SLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVS 172
ADP +++ SL++ K SP Q +L+K +E G L R W +P+Y +
Sbjct: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQN--RLKKFVEGGQLGIFRNGYWGHPQYKLP 195
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 32.2 bits (73), Expect = 0.40
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 18/109 (16%)
Query: 106 APASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQ-------------ELVKLRKLIE 152
A A+ + V A P+ P A + + LKS + +
Sbjct: 173 ATATEAKVQTASPAQTPATP--PAGKGAAASGQLKSAPSSHYTLQLSASGSYDNVNGFAK 230
Query: 153 KGNLADVR---KLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNP 198
K NL P Y+V G++ T + L +A P
Sbjct: 231 KQNLKGYVVYETTRNGKPWYVVVYGNYATRQEAKAAVSTLPADVQAKKP 279
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 31.7 bits (71), Expect = 0.42
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 214 TNLLYDSDTPSYIERSDILLD----LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK 269
L + IE + +LL+ L VN TPLH+AA G + V+ L+ A
Sbjct: 112 LAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL-EAG 170
Query: 270 IQTSVRNKEGKTPLDSSSGLDL--LENYLHTKLLDTVAAKKDETN 312
+ RN G T LD ++ L L K L K +
Sbjct: 171 ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEG 215
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 29.6 bits (67), Expect = 2.6
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 184 CRYNALH---VSTKAVNPAMTEMLLEIIGNPAFTNL-----LYDSDTPSYIERSDILLDL 235
+ LH S K + L+ +PA T++ L+ T S +RS +L L
Sbjct: 186 RFRSLLHHHLQSFKP-RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL 244
Query: 236 YVNTPDKALN---ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
A N +TPLH+AA F + +RLI G + + +G TPL
Sbjct: 245 IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA---DINAVSSDGNTPL 294
>gnl|CDD|204181 pfam09251, PhageP22-tail, Salmonella phage P22 tail-spike. Members
of this family of viral domains adopt a structure
consisting of a single-stranded right-handed beta-helix,
which in turn is made of parallel beta-strands and short
turns. They are required for recognition of the
0-antigenic repeating units of the cell surface, and for
subsequent infection of the bacterial cell.
Length = 549
Score = 29.8 bits (67), Expect = 2.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 314 NTVDQPSVDMISPIEKLCVNFDTLSLSSHSNGSPESNSS--SVTSMS 358
N+ + S + I KL D+ +L SH NG S S+ +T++S
Sbjct: 438 NSFNSDSAALALRIHKLSKTLDSGALYSHINGGAGSGSAWTELTAIS 484
>gnl|CDD|225588 COG3046, COG3046, Uncharacterized protein related to
deoxyribodipyrimidine photolyase [General function
prediction only].
Length = 505
Score = 29.7 bits (67), Expect = 2.9
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 63 NKEEALLFIKKNKKIRFKSFRNFQDA----QNFAYHG--SCGVNTSLLEAPASPSTVTAA 116
+ +AL +K R +F ++QDA +H S +N LL +P V A
Sbjct: 226 TRTQALRALKHFIADRLPNFGSYQDAMSADDPHLWHSLLSFALNIGLL----TPLEVIRA 281
Query: 117 DPSAL-PQMSSLAAAE 131
A L + E
Sbjct: 282 ALKAYREGDIPLNSVE 297
>gnl|CDD|217789 pfam03915, AIP3, Actin interacting protein 3.
Length = 424
Score = 29.2 bits (66), Expect = 3.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 106 APASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKS--QELVKLRKL 150
A A PS+LP SS + P+ K L+S +EL LR+
Sbjct: 120 AKEVARPAAAPPPSSLPNSSSSPDSINPAGLKELQSLRRELAVLRQT 166
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed.
Length = 337
Score = 29.0 bits (66), Expect = 3.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 133 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS 173
P K K + KL KL+E+G + DVR +V P+ LV+
Sbjct: 115 TLPKKDEKKKAFEKLLKLLEEGKIVDVRVIVHTQPK-LVTG 154
>gnl|CDD|216206 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane
region. There are also some members in this family that
do not match the Prosite motif, and belong to the
subfamily SODIT1.
Length = 471
Score = 28.8 bits (65), Expect = 5.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 99 VNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKS 138
V + LL APA PS A P + SL A +P K
Sbjct: 127 VFSDLLLAPAIPSNTARAGGIVFPIIMSLPPAFGSTPEKG 166
>gnl|CDD|224746 COG1833, COG1833, Uri superfamily endonuclease [Replication,
recombination, and repair].
Length = 132
Score = 27.3 bits (61), Expect = 6.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 68 LLFIKKNKKIRFKSFRNFQDAQNFAYHGSCG 98
+ F+ + I+F S D +AY GS
Sbjct: 8 VFFLCTDVVIKFGSKGFHLDRGYYAYVGSAM 38
>gnl|CDD|237449 PRK13616, PRK13616, lipoprotein LpqB; Provisional.
Length = 591
Score = 28.0 bits (63), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 104 LEAP-----ASPSTVTAADPSALPQMSSLAAAEK 132
L AP ASPSTV D A+ Q+ + + ++
Sbjct: 539 LSAPVVAVAASPSTVYVTDARAVLQLPNSDSGDQ 572
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 27.9 bits (62), Expect = 9.5
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 48 GGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 91
GG ++ E + V E L KK K K FRN D F
Sbjct: 218 GGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFRNKLDESRF 261
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 27.9 bits (62), Expect = 9.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
TPLH A G V+ V+ L+ ++ +K+GKTPL+
Sbjct: 116 RTPLHIACANGHVQVVRVLLEFGA-DPTLLDKDGKTPLE 153
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,865,516
Number of extensions: 1689865
Number of successful extensions: 1044
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 41
Length of query: 367
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 269
Effective length of database: 6,590,910
Effective search space: 1772954790
Effective search space used: 1772954790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.8 bits)