RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4222
(367 letters)
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 56.2 bits (135), Expect = 4e-09
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 18/128 (14%)
Query: 178 TILHEGCRYNALHVSTKAVNPAMTEMLLEII---------GNPAFTNLLYDSDTPSYIER 228
TILH + + + A + ++ I+ G + D +
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262
Query: 229 SDILLDLY-----VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTP 282
+ L + +N D +T L+ AA+ G++ V L+ A + NK G P
Sbjct: 263 LENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRP 319
Query: 283 LDSSSGLD 290
+D +GL+
Sbjct: 320 VDFGAGLE 327
Score = 49.3 bits (117), Expect = 9e-07
Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 29/180 (16%)
Query: 158 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL- 216
D+ +P ++ + P + + + + P + EM + + + N
Sbjct: 33 DLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE 92
Query: 217 LYDSDTPSY----------IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG 266
S+ + + L +N P TPLH+ ++E VK L+
Sbjct: 93 GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152
Query: 267 CAKIQTSVRNKEGKTPL----------DSSSGLDLLENYLHTKLLDTVAAKKDETNGNTV 316
+ G++ L DS + LL+ L + +D T+
Sbjct: 153 -HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD-----YLYPCLIL-EDS-MNRTI 204
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 49.7 bits (120), Expect = 6e-08
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSG---LDLL 292
+N PDK + TPL A G V CVK L+ A +V+ +G T +++ LL
Sbjct: 66 INAPDKH-HITPLLSAVYEGHVSCVKLLLSKGADK--TVKGPDGLTAFEATDNQAIKALL 122
Query: 293 E 293
+
Sbjct: 123 Q 123
Score = 42.0 bits (100), Expect = 3e-05
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
VN + PLH+AA G +E ++ L+ G A I +K TPL S+ E
Sbjct: 33 VNRTLEG-GRKPLHYAADCGQLEILEFLLLKG-ADIN--APDKHHITPLLSAV----YEG 84
Query: 295 YLHT-KLLDTVAAKKDETN--GNT 315
++ KLL + A K G T
Sbjct: 85 HVSCVKLLLSKGADKTVKGPDGLT 108
Score = 42.0 bits (100), Expect = 4e-05
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ +A K G ++ VK + + + + G+ PL
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPL 44
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 52.1 bits (126), Expect = 7e-08
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSGLDLLENY 295
VN DK T LH+A G+ + L+ A + +N +G++ LD +
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDLAK----QRKN 222
Query: 296 LHT-KLLDTVAAKKDETN 312
+ L K N
Sbjct: 223 VWMINHLQEARQAKGYDN 240
Score = 49.7 bits (120), Expect = 4e-07
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
V+ LN TPLH+A + G + V +L+ A S+ + EG + +
Sbjct: 68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP--SLIDGEGCSCI 113
Score = 47.8 bits (115), Expect = 1e-06
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 236 YVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
++ D + + A ++G E + L+ ++ +KE T L
Sbjct: 1 HMTHIDDY-STWDIVKATQYGIYERCRELVEAGYDVRQ--PDKENVTLL 46
Score = 44.7 bits (107), Expect = 1e-05
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSS----GLDL 291
+ D + +H AA+FG V LI + + ++ G TPL ++ +D
Sbjct: 102 PSLIDGE-GCSCIHLAAQFGHTSIVAYLIAKGQDV--DMMDQNGMTPLMWAAYRTHSVDP 158
Query: 292 LENYLHTKLLDTVAA---KKDETNGNT 315
T+LL T D+ + NT
Sbjct: 159 ------TRLLLTFNVSVNLGDKYHKNT 179
Score = 42.4 bits (101), Expect = 9e-05
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
V PDK N T LH+AA ++ VK I A + + TPL
Sbjct: 35 VRQPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPL 80
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 51.5 bits (124), Expect = 7e-08
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP----SYIERSDILLDLYVNTPDKA 243
+ + P + L G+ + SDT + R+ ++ YV ++
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYIT--DMSDTNWWKGTSKGRTGLIPSNYVAEQAES 72
Query: 244 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ PLH AAK G++ ++ + + + +K G T L
Sbjct: 73 -IDNPLHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTAL 110
Score = 50.3 bits (121), Expect = 2e-07
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
VN DKA T L++A G + V+ L I+ + +NK G T L
Sbjct: 99 VNGLDKA-GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144
Score = 49.9 bits (120), Expect = 3e-07
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
+N +K L +T LH AA G + V+ L+ A+ +RN E K D ++
Sbjct: 133 LNQQNK-LGDTALHAAAWKGYADIVQLLLAKGART--DLRNIEKKLAFDMATN----AAC 185
Query: 296 LHT-KLLDTVAAKKDETNGNT 315
K A + +N
Sbjct: 186 ASLLKKKQGTDAVRTLSNAED 206
Score = 34.1 bits (79), Expect = 0.042
Identities = 7/78 (8%), Positives = 18/78 (23%), Gaps = 9/78 (11%)
Query: 240 PDKALN--ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLH 297
P K + + + A L + T + +
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELY-IEEGDIIYITDMSDTNWWKGT------SKGR 57
Query: 298 TKLLDTVAAKKDETNGNT 315
T L+ + + + +
Sbjct: 58 TGLIPSNYVAEQAESIDN 75
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 51.7 bits (125), Expect = 9e-08
Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 44/181 (24%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
S + V L L++ G A V+ ++ D + +HE R +
Sbjct: 137 SWDCVNL--LLQHG--ASVQP---ES--------DLASPIHEAARRG---------HVEC 172
Query: 201 TEMLLEIIGNP-AFTNLLYDSDTP-------SYIERSDILLDLYVNTPDKALN-ETPLHF 251
L+ GN + TP LL+ + ++ ++PLH
Sbjct: 173 VNSLIAYGGNIDHKIS---HLGTPLYLACENQQRACVKKLLESGAD-VNQGKGQDSPLHA 228
Query: 252 AAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDE 310
+ S E L+ A Q +N EGK P++ E+ L L+ A +
Sbjct: 229 VVRTASEELACLLMDFGADTQ--AKNAEGKRPVELVP----PESPLAQLFLEREGASLPK 282
Query: 311 T 311
Sbjct: 283 P 283
Score = 45.2 bits (108), Expect = 2e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN + +PLH A G + CVK L+ A++ + TPL
Sbjct: 85 VNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVN--GVTADWHTPL 129
Score = 44.0 bits (105), Expect = 3e-05
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
VN TPL A GS +CV L+ G A +Q + +P+
Sbjct: 118 VNGVTAD-WHTPLFNACVSGSWDCVNLLLQHG-ASVQP---ESDLASPI 161
Score = 42.9 bits (102), Expect = 8e-05
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 219 DSDTPSYI-ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRN 276
D P+ + I L D + +P+H AA G ++ LI +
Sbjct: 32 DGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI--IT 89
Query: 277 KEGKTPL 283
+ +PL
Sbjct: 90 ADHVSPL 96
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 49.7 bits (120), Expect = 1e-07
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
+N ++ PLH+A +G + + L+ A + S+ NK G+ P+D +
Sbjct: 98 INAVNE-HGNVPLHYACFWGQDQVAEDLVANGALV--SICNKYGEMPVDKAKA----PLR 150
Query: 296 LHT-KLLDTVAAKKDETN 312
+ + + +
Sbjct: 151 ELLRERAEKMGQNLNRIP 168
Score = 45.1 bits (108), Expect = 6e-06
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+N D +PLH+A + G V+ LI A+I V N+ TPL
Sbjct: 32 LNQGDDH-GFSPLHWACREGRSAVVEMLIMRGARIN--VMNRGDDTPL 76
Score = 44.7 bits (107), Expect = 8e-06
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+N ++ ++TPLH AA G + V++L+ A I + N+ G PL
Sbjct: 65 INVMNRG-DDTPLHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPL 109
Score = 42.0 bits (100), Expect = 8e-05
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
+ + G+ V+ + + + + G +PL
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 50.2 bits (121), Expect = 2e-07
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 39/167 (23%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
E+ + L+ G D D G+ T LH C A
Sbjct: 57 QPEIAEA--LLGAG--CDPELR--DF------RGN--TPLHLACEQG---------CLAS 93
Query: 201 TEMLLEIIGNPAFTNLL----YDSDTP-------SYIERSDILLDL--YVNTPDKALNET 247
+L + P ++L Y+ T Y+ ++L+ L VN + T
Sbjct: 94 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 153
Query: 248 PLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLE 293
LH A + + V L+ C A + + +G +P + G
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPYQLTWGRPSTR 198
Score = 46.0 bits (110), Expect = 6e-06
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+N + L +TPLH A E + L+G +R+ G TPL
Sbjct: 38 LNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPL 82
Score = 37.1 bits (87), Expect = 0.005
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDS-SSGLDLLEN 294
VN +P S ++L + + E + D+ S + E+
Sbjct: 177 VNRVTYQ-GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTED 235
Score = 36.0 bits (84), Expect = 0.011
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 246 ETPLHFAAKFGS----VECVKRLIGC-AKIQTSVRNKEGKTPL 283
++ LH A +E ++++ G A + + +N +TPL
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFL--NFQNNLQQTPL 49
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 50.5 bits (122), Expect = 3e-07
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 26/155 (16%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
+ +K L ++G A+V T L + + +
Sbjct: 117 KVKALKF--LYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKG---------HVEV 163
Query: 201 TEMLLEIIG-------NPAFTNLLY---DSDTPSYIERSDILLDLY--VNTPDKALNETP 248
++LL+ +G N L++ SD + +LLD VN + +TP
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-GKTP 222
Query: 249 LHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
L A + + V+RL+ I+ + + +GKT L
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Score = 45.9 bits (110), Expect = 9e-06
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN ++ TPLH A + + V+ L+ A +R K G TP
Sbjct: 31 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPF 76
Score = 44.4 bits (106), Expect = 3e-05
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
K TP AA GSV+ +K + A + + + G T
Sbjct: 65 PVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADV--NECDFYGFTAF 109
Score = 40.5 bits (96), Expect = 5e-04
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKI--------QTSVRNKEGKTPL 283
VN D T AA +G V+ +K L G A + K G T L
Sbjct: 98 VNECDF-YGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATAL 152
Score = 39.0 bits (92), Expect = 0.001
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ L A + V+ V++L+ A + + G TPL
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPL 43
Score = 34.0 bits (79), Expect = 0.060
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
+N D +T L A + + + L
Sbjct: 246 INDTDS-DGKTALLLAVELKLKKIAELLC 273
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 47.8 bits (115), Expect = 4e-07
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
++ + ++ L AA G VE V++L+ A + N+ G+ P+
Sbjct: 5 IHMLGGS-SDAGLATAAARGQVETVRQLLEAGADP--NALNRFGRRPI 49
Score = 44.4 bits (106), Expect = 6e-06
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N D A P+H AA+ G ++ + L A++ V + G+ P+
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL--DVCDAWGRLPV 115
Score = 36.7 bits (86), Expect = 0.003
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
++ D P+ A + G + + L
Sbjct: 104 LDVCDAW-GRLPVDLAEEQGHRDIARYLH 131
Score = 35.1 bits (82), Expect = 0.010
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKT-PL 283
N ++ P+ GS + + L+ G A+ + + T P+
Sbjct: 38 PNALNRF-GRRPIQVMMM-GSAQVAELLLLHG-AEP--NCADPATLTRPV 82
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 48.2 bits (116), Expect = 5e-07
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
+N D TPL +A + V+CV+ L+ A + + G TP+D + Y
Sbjct: 95 INIYDWN-GGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPMDLAV----ALGY 147
Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
++++ K ++N
Sbjct: 148 RKVQQVIENHILKLFQSNLVPAD 170
Score = 43.6 bits (104), Expect = 2e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ K E+ L A+ G + V L+ I + + G TPL
Sbjct: 62 PHILAKE-RESALSLASTGGYTDIVGLLLERDVDIN--IYDWNGGTPL 106
Score = 43.6 bits (104), Expect = 2e-05
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 247 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+H A G ++ +K + G + + ++ G TPL
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPL 40
Score = 43.2 bits (103), Expect = 3e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
VN PD+ TPL +A+ FG +E V+ L+ G A + KE ++ L
Sbjct: 29 VNKPDER-GFTPLIWASAFGEIETVRFLLEWG-ADP--HILAKERESAL 73
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 49.4 bits (118), Expect = 5e-07
Identities = 35/147 (23%), Positives = 48/147 (32%), Gaps = 31/147 (21%)
Query: 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN---ALHVSTKAVNPA 199
+ VKL L+E G ADV + R + G F C Y L ++
Sbjct: 104 QCVKL--LVENG--ADV------HLR---ACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150
Query: 200 MTEMLLEIIGNPAFTNLLYDSD--TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS 257
+ LLE PA DS T L V D + + L G
Sbjct: 151 VVTYLLENPHQPASLEAT-DSLGNTV---------LHALVMIADNSPENSALVIHMYDGL 200
Query: 258 VECVKRLIG-CAKIQTSVRNKEGKTPL 283
++ RL + N +G TPL
Sbjct: 201 LQMGARLCPTVQLE--EISNHQGLTPL 225
Score = 38.6 bits (90), Expect = 0.002
Identities = 29/189 (15%), Positives = 51/189 (26%), Gaps = 46/189 (24%)
Query: 151 IEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCR----YNALHV---STKAVNPAMTEM 203
+ +G ++ L+ YL + + T L + + A
Sbjct: 10 VSRGVPEELTGLL----EYLRWNSKYLTD-SAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 204 LLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR 263
LL+I + L ++ + LH A + S++CVK
Sbjct: 65 LLQIDKDSGNPKPLVNAQ---------------CTDEFY-QGHSALHIAIEKRSLQCVKL 108
Query: 264 LIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLH----------TKLL---DTVAAKKD 309
L+ A + R + E L L A +
Sbjct: 109 LVENGADVHL--RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE 166
Query: 310 E--TNGNTV 316
+ GNTV
Sbjct: 167 ATDSLGNTV 175
Score = 29.8 bits (67), Expect = 1.1
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 245 NETPLHFAAKFGSVECVKRLI----GCAKIQTS---VRNKEGKTPL 283
+ L G E + L+ +K T GKT L
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 5e-07
Identities = 64/343 (18%), Positives = 101/343 (29%), Gaps = 130/343 (37%)
Query: 20 LTPTKVATKSEGT---EEGIYFAVYIPSELLGGYENEFSECERVFDNKEEAL--LFIKKN 74
TP ++ + +G +G+ AV I F F + +A+ LF
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAE---TDSWESF------FVSVRKAITVLFF--- 305
Query: 75 KKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEK-P 133
I + +A P T+ PS L SL E P
Sbjct: 306 --IGVRC----YEA-----------------YP-----NTSLPPSIL--EDSLENNEGVP 335
Query: 134 SPFKSLKSQELVKLRKLIEKGN--LADVRK----LVWDN-PRYLVSSGDFPTILHEGCRY 186
SP S+ + +++ + K N L ++ LV N + LV SG P L+
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--NGAKNLVVSG-PPQSLYGLNL- 391
Query: 187 NALHVSTKAVNPA--------MTEMLLEI------IGNPAFTNLLYD------------- 219
L KA P+ +E L+ + +P ++LL
Sbjct: 392 -TLR-KAKA--PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 220 -----SD--TPSY---------IERSDI---LLDLYVNTP---DKALNETPLHFAAKFG- 256
D P Y + I ++D + P + H FG
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD-FGP 506
Query: 257 -SVECVKRLIGCAKIQTSVRNKEGK-------TPLDSSSGLDL 291
+ L RNK+G LD + D
Sbjct: 507 GGASGLGVLTH--------RNKDGTGVRVIVAGTLDINPDDDY 541
Score = 35.0 bits (80), Expect = 0.041
Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 80/212 (37%)
Query: 2 SVCFKMPSVDSMGPLS-TKLT-P----TKVAT----KSEG-TEEGIYFA--VYIPSELLG 48
S F+ G LS T+ T P + A KS+G FA S LG
Sbjct: 1716 SYTFRSEK----GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH----S--LG 1765
Query: 49 GYENEFS---ECERVFDNKEEA--LLFIKKNKKIRFKSFRNF--QDAQNFAYHGSCGVNT 101
E++ V E ++F R + + +D + +G +N
Sbjct: 1766 ----EYAALASLADVMS-IESLVEVVFY------RGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 102 S------------------------LLEAPA---SPS--TVTAADPSALPQMSSLAAAEK 132
L+E + V A D AL ++++
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVE-IVNYNVENQQYVAAGDLRALDTVTNVL---- 1869
Query: 133 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVW 164
+K Q+ + + +L + +L +V ++
Sbjct: 1870 ----NFIKLQK-IDIIELQKSLSLEEVEGHLF 1896
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 48.3 bits (116), Expect = 6e-07
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
++ D T LH AA + E V+ L+ G A I V ++ G T L+
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADI--EVEDERGLTALE 148
Score = 46.7 bits (112), Expect = 2e-06
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 231 ILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
+ + + ETP AA+ + + +L+ + ++ G+T L
Sbjct: 32 PSSYIAADVVSE--YETPWWTAARKADEQALSQLLEDRDV--DAVDENGRTAL 80
Score = 42.9 bits (102), Expect = 3e-05
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
V+ D+ T L F A GS +CV+ L G A + + G T L
Sbjct: 69 VDAVDEN-GRTALLFVAGLGSDKCVRLLAEAG-ADLD-HRDMRGGLTAL 114
Score = 35.2 bits (82), Expect = 0.015
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 6/38 (15%)
Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
K G A + E +TP
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPW 48
Score = 33.6 bits (78), Expect = 0.044
Identities = 4/29 (13%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
+ D+ T L A + +
Sbjct: 136 IEVEDER-GLTALELAREILKTTPKGNPM 163
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 49.1 bits (118), Expect = 8e-07
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+N P+ TPLH A + + ++ L+ A + R G+TPL
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP--TARMYGGRTPL 229
Score = 46.8 bits (112), Expect = 4e-06
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 236 YVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
Y++ + L +T LH AA G V++L A + V + G T L
Sbjct: 37 YLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTAL 82
Score = 45.6 bits (109), Expect = 1e-05
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 246 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+T LH A + L+ ++N G+T L
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49
Score = 45.6 bits (109), Expect = 1e-05
Identities = 29/156 (18%), Positives = 41/156 (26%), Gaps = 29/156 (18%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV--------- 191
V+ L G A V + G T LH CR A
Sbjct: 57 EASTVEK--LYAAG--AGVLVA--ER------GGH--TALHLACRVRAHTCACVLLQPRP 102
Query: 192 -STKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL--YVNTPDKALNETP 248
+ + + + + DS E D + + TP
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD-GHTP 161
Query: 249 LHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
LH A E V+ L A + G+TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPL 196
Score = 45.2 bits (108), Expect = 1e-05
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 4/52 (7%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSS 287
TPL A + + L A + +P SS
Sbjct: 218 PTARMYG-GRTPLGSALLRPNPILARLLRAHGAPE--PEDGGDKLSPCSSSG 266
Score = 39.5 bits (93), Expect = 0.001
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 6/65 (9%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYL 296
V ++ T LH A + + C L+ + + D +
Sbjct: 71 VLVAERG-GHTALHLACRVRAHTCACVLLQ-PRPSHPRDASDTYLTQ----SQDCTPDTS 124
Query: 297 HTKLL 301
H
Sbjct: 125 HAPAA 129
Score = 28.3 bits (64), Expect = 3.9
Identities = 1/25 (4%), Positives = 4/25 (16%), Gaps = 1/25 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECV 261
+P + +
Sbjct: 251 EPEDGGD-KLSPCSSSGSDSDSDNR 274
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 48.8 bits (117), Expect = 8e-07
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
++ D T LH AA + E V+ L+ G A I V ++ G T L+
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADI--EVEDERGLTALE 149
Score = 45.7 bits (109), Expect = 7e-06
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
ETP AA+ + + +L+ + ++ G+T L
Sbjct: 45 YETPWWTAARKADEQALSQLLEDRDVD--AVDENGRTAL 81
Score = 41.4 bits (98), Expect = 2e-04
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
V+ D+ T L F A GS +CV+ L G A + + G T L
Sbjct: 70 VDAVDEN-GRTALLFVAGLGSDKCVRLLAEAG-ADLD-HRDMRGGLTAL 115
Score = 35.3 bits (82), Expect = 0.022
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 16/100 (16%)
Query: 188 ALHVSTKAVNPAMTEMLLEI---IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKAL 244
AL ++ + + ++ IG N+L Y E +I+
Sbjct: 147 ALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF-EYAEVDEIVEK------RGK- 198
Query: 245 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
+ + +C A+ K+ + L
Sbjct: 199 GKDVEYLVRWKDGGDCEWVKGVHVAEDVA----KDYEDGL 234
Score = 34.9 bits (81), Expect = 0.028
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 9/59 (15%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLE 293
+ D+ T L A + + G +I E + + E
Sbjct: 137 IEVEDER-GLTALELAREILKTTPKGNPMQFG-RRI-----GLEKVINVLEGQVFEYAE 188
Score = 34.1 bits (79), Expect = 0.050
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 6/38 (15%)
Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
K G A + E +TP
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPW 49
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 48.6 bits (117), Expect = 8e-07
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
V DK N+ PLH AA GS++ ++ L G + + + ++K+G TPL + E
Sbjct: 133 VRIKDKF-NQIPLHRAASVGSLKLIELLCGLGKSAV--NWQDKQGWTPLFHAL----AEG 185
Query: 295 YLHT--KLLDTVAAKKDETN--GNT 315
+ L++ A+ D + G
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAK 210
Score = 45.9 bits (110), Expect = 6e-06
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD----LL 292
VN DK TPL A G + L+ + + + +G D + L
Sbjct: 167 VNWQDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFL 225
Query: 293 EN 294
N
Sbjct: 226 NN 227
Score = 44.7 bits (107), Expect = 1e-05
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 237 VNTPDKALN--ETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
VN D + TP H A G++E VK L K + +G T L
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Score = 42.4 bits (101), Expect = 9e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
+N T LH A E + LI A + +++K + PL
Sbjct: 100 LNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPL 144
Score = 41.7 bits (99), Expect = 1e-04
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKI-QTSVRNKEGKTPL 283
+ D+ PLH++ F + E L+ + + G TP
Sbjct: 29 LLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76
Score = 39.0 bits (92), Expect = 0.001
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 244 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
++ PLH A V+ L+ ++++G+ PL
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 40
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 47.0 bits (113), Expect = 8e-07
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSS 287
VNT N++PLH AAK G V+ VK L+ A + N G P+D +
Sbjct: 69 VNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASR--NAVNIFGLRPVDYTD 117
Score = 43.9 bits (105), Expect = 8e-06
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDT 303
ET LH A+ G + V+ L+ + V++ G TPL + +L +LL
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPN--VKDHAGWTPLHEAC----NHGHLKVVELLLQ 64
Query: 304 VAAKKDETN--GNT 315
A + T ++
Sbjct: 65 HKALVNTTGYQNDS 78
Score = 29.3 bits (67), Expect = 1.0
Identities = 2/29 (6%), Positives = 6/29 (20%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
N + P+ + +
Sbjct: 102 RNAVNIF-GLRPVDYTDDESMKSLLLLPE 129
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 49.1 bits (118), Expect = 9e-07
Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 50/191 (26%)
Query: 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA 199
+ E++K+ L++ G A D T L + N
Sbjct: 151 EYLEMIKI--LVQLG--ASPTAK--DK--------ADETPLMRAMEFR---------NRE 187
Query: 200 MTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 259
+++++ + + + ++ +K + LH+A +
Sbjct: 188 ALDLMMDTVPSKSSLR---------------------LDYANK-QGNSHLHWAILINWED 225
Query: 260 CVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLE--NYLHTKLLDTVAAKKDETNGNTV 316
R + + ++ + E PL S ++ L K + NG TV
Sbjct: 226 VAMRFVEMGIDV--NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283
Query: 317 DQPSVDMISPI 327
V + +
Sbjct: 284 LPDRVVWLDFV 294
Score = 48.7 bits (117), Expect = 1e-06
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
D N +H AA+ G + V+RLI +++N+ G T L +
Sbjct: 13 RIKSDDE-NMEKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTALHLAC----KFGC 65
Query: 296 LHT-KLLDTVAAKKDETNGNT 315
+ T K L +V +G
Sbjct: 66 VDTAKYLASVGEVHSLWHGQK 86
Score = 44.1 bits (105), Expect = 4e-05
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
++ T LH A KFG V+ K L G+ P+
Sbjct: 46 PTIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQKPI 88
Score = 43.7 bits (104), Expect = 6e-05
Identities = 13/118 (11%), Positives = 27/118 (22%), Gaps = 24/118 (20%)
Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY-----------DSDTPSYI-------ERS 229
L++S +A +T+ LL+ Y E
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306
Query: 230 DILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLD 284
+L + V K + + + A + R++
Sbjct: 307 QLLQEKLDEVVRSLNT-GAGGAVKRKKKAAPAVKRMKLAPSAPV--RTRSRSRARSSA 361
Score = 41.8 bits (99), Expect = 2e-04
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 10/47 (21%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
+ + P+H A + V L+ + G+ P
Sbjct: 79 HSLWH---GQKPIHLAVMANKTDLVVALV-------EGAKERGQMPE 115
Score = 37.9 bits (89), Expect = 0.004
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
+ P + E + V++ +G+T L
Sbjct: 111 GQMPESLLNECDEREVNEIGS-------HVKHCKGQTAL 142
Score = 37.2 bits (87), Expect = 0.007
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 237 VNTPDKALNETPLHFAAKFG--SVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+ +T LH+ G +E +K L+ G A + ++K +TPL
Sbjct: 131 SHVKHCK-GQTALHWCVGLGPEYLEMIKILVQLG-ASP--TAKDKADETPL 177
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 48.7 bits (117), Expect = 1e-06
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLD--SSSGLDLLE 293
VN D TPLH AA +G E + L+ + NK G+T D L LE
Sbjct: 225 VNIKDYD-GWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFDVADEDILGYLE 281
Query: 294 NYLHTKLLDTVAAKKDET 311
+ L ++ ++
Sbjct: 282 ELQKKQNLLHSEKREKKS 299
Score = 43.3 bits (103), Expect = 6e-05
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLD--SSSG-LDLL 292
+N PD PLH AA G ++ + LI A + N EG TPLD +LL
Sbjct: 99 INQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHV--GAVNSEGDTPLDIAEEEAMEELL 155
Query: 293 ENYLHTKLLDTVAAKKDETNGNTVD 317
+N ++ + +D AA+K+E D
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRD 180
Score = 43.3 bits (103), Expect = 7e-05
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 21/106 (19%)
Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLY---------VN 238
L ++ + + + + G D + E +L D
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGV--------DIEAARKEEERIMLRDARQWLNSGHINDV 193
Query: 239 TPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
K+ T LH AA G E +K LI + ++++ +G TPL
Sbjct: 194 RHAKS-GGTALHVAAAKGYTEVLKLLIQARYDV--NIKDYDGWTPL 236
Score = 40.9 bits (97), Expect = 4e-04
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+N + T LH A +V+ VK L+ A I + + EG PL
Sbjct: 66 INYANVD-GLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPL 110
Score = 40.6 bits (96), Expect = 4e-04
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ A G E V RL+ A I N +G T L
Sbjct: 34 TKVKFD--DGAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTAL 77
Score = 36.3 bits (85), Expect = 0.009
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 12/72 (16%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVA 305
+TPL A + E ++ + + + + + + L + + L++
Sbjct: 140 DTPLDIAEEEAMEELLQNEV-------NRQGVDIEAARKEEERIMLRDA---RQWLNSGH 189
Query: 306 AKKDETN--GNT 315
G T
Sbjct: 190 INDVRHAKSGGT 201
Score = 31.7 bits (73), Expect = 0.34
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 11/77 (14%)
Query: 243 ALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KL 300
A + GS ++ + K + V+ +G L + S
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTK--VKFDDGAVFLAACS-----SGDTEEVLR 58
Query: 301 LDTVAAKKDETN--GNT 315
L A + N G T
Sbjct: 59 LLERGADINYANVDGLT 75
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 49.0 bits (118), Expect = 1e-06
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYL 296
VN K +PLH AA+ G + V L+ + + +G TPL + Y+
Sbjct: 337 VNAKTKL-GYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAK----RLGYI 390
Query: 297 HT-KLLDTVAAKKDETN 312
+L V +
Sbjct: 391 SVTDVLKVVTDETSFVL 407
Score = 49.0 bits (118), Expect = 1e-06
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVN 238
LH++ + + M +LL N N TP ++ +D+L+ V+
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 239 TPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ TPLH A+ +G+++ VK L+ A + + + K G +PL
Sbjct: 306 ATTRM-GYTPLHVASHYGNIKLVKFLLQHQADV--NAKTKLGYSPL 348
Score = 47.1 bits (113), Expect = 5e-06
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N TPLH AA+ G E V L+ A ++ NK G TPL
Sbjct: 238 ANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANG--NLGNKSGLTPL 282
Score = 46.7 bits (112), Expect = 6e-06
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN K ++TPLH AA+ G VK L+ A ++ G TPL
Sbjct: 73 VNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANP--NLATTAGHTPL 117
Score = 46.3 bits (111), Expect = 8e-06
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N + ETPLH AA+ G E K L+ AK+ + + K+ +TPL
Sbjct: 40 PNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKV--NAKAKDDQTPL 84
Score = 44.4 bits (106), Expect = 4e-05
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
++ TPLH A+ G + VK L+ A +V N + +TPL
Sbjct: 7 GGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPL 51
Score = 44.4 bits (106), Expect = 4e-05
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
K TPLH AAK+G V + L+ A + K G TPL
Sbjct: 139 QACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPL 183
Score = 44.0 bits (105), Expect = 5e-05
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N K TPLH A +++ VK L+ G TPL
Sbjct: 172 PNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPH--SPAWNGYTPL 216
Score = 43.6 bits (104), Expect = 7e-05
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N A TPLH AA+ G VE V L+ A + K+G TPL
Sbjct: 106 PNLATTA-GHTPLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPL 150
Score = 43.3 bits (103), Expect = 9e-05
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
++P TPLH AAK VE + L+ + + +G TPL ++ E +
Sbjct: 205 PHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAA----QEGH 257
Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
LL + A + N G T
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLT 280
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 47.0 bits (113), Expect = 1e-06
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS 287
VN PD P+H A + G V L + + R+ G TPL+ +
Sbjct: 94 VNVPDGT-GALPIHLAVQEGHTAVVSFLAAESDL--HRRDARGLTPLELAL 141
Score = 43.6 bits (104), Expect = 1e-05
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N D + +P+H AA+ G ++ +K L+ A + +V + G P+
Sbjct: 61 PNVQDTS-GTSPVHDAARTGFLDTLKVLVEHGADV--NVPDGTGALPI 105
Score = 39.3 bits (93), Expect = 4e-04
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
L AA G V+ V+RL+ + N+ GKT L
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL 40
Score = 39.3 bits (93), Expect = 5e-04
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+ ++ +T L FGS L+ G A +V++ G +P+
Sbjct: 29 PDALNRF-GKTALQVMM-FGSTAIALELLKQG-ASP--NVQDTSGTSPV 72
Score = 33.9 bits (79), Expect = 0.032
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
++ D TPL A + G+ + V L
Sbjct: 126 LHRRDAR-GLTPLELALQRGAQDLVDILQ 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 52/383 (13%), Positives = 107/383 (27%), Gaps = 123/383 (32%)
Query: 41 YIPSELLGGYENEFSECERVF--DNKEEALLFI-----KKNKKIRFKSFRNFQDAQNFAY 93
+ E E + + + L + K +++ + F N+ +
Sbjct: 37 DVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKF 93
Query: 94 HGSCGVNTSLLEAPASPSTVTAA----------DPSALPQMSSLAAAEKPSPFKSLKSQE 143
+ + + PS +T D + + + P+ L+ Q
Sbjct: 94 -----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLR-QA 143
Query: 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDF---PTIL-HEGCRYNALH--------- 190
L++LR + ++ G T + + C +
Sbjct: 144 LLELRP-----------------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 191 VSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLH 250
++ K N E +LE++ LLY D P++ RSD ++ + L
Sbjct: 187 LNLKNCN--SPETVLEML-----QKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 251 FAAKFG----------SVECVKRL-IGCAKIQTSVRNK-----------------EGKTP 282
+ + + + + C + T+ R K
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMT 297
Query: 283 LDSSSGLDLLENYLHTK--------------LLDTVAAK-KDETNG-NTVDQPSVDMISP 326
L LL YL + L +A +D + + D ++
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 327 IEKLCVN----------FDTLSL 339
I + +N FD LS+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSV 380
Score = 46.8 bits (110), Expect = 9e-06
Identities = 50/360 (13%), Positives = 100/360 (27%), Gaps = 119/360 (33%)
Query: 51 ENEFSECERVFDNK--EEALLFIK--KNKKIRFKSFRNFQ--------DAQNFAYHGSCG 98
+ +E R+ +K E LL + +N K + +F N Q + +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAF-NLSCKILLTTRFKQVTDFLSAAT 285
Query: 99 VNTSLLEAPASPST----------VTAADPSALP-QMS-------SLAAA---EKPSPFK 137
L+ + T P LP ++ S+ A + + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 138 SLKSQELVKLRKLIEKG--NL--ADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVST 193
+ K KL +IE L A+ RK+ ++ L V
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKM-----------------------FDRLSVFP 382
Query: 194 KAVN-PAMTEMLL---------EIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKA 243
+ + P + L+ ++ N L + + +Y+ K
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKL 439
Query: 244 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVR-NKEGKTPLDSSSGLDLLENYL------ 296
NE LH + ++ I + + LD Y
Sbjct: 440 ENEYALH-----------RSIVDHYNIPKTFDSDDLIPPYLD---------QYFYSHIGH 479
Query: 297 HTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDTLSLSSHSNGSPESNSSSVTS 356
H K + E ++ + ++F L + + + S S+ +
Sbjct: 480 HLK-----NIEHPE------------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Score = 46.0 bits (108), Expect = 1e-05
Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 58/249 (23%)
Query: 145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV--------STKAV 196
V ++ + DV+ D P+ ++S + I+ + + V
Sbjct: 24 VFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 197 NPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG 256
+ E+L + L + S + +Y+ D+ N+ + FA
Sbjct: 80 QKFVEEVL-----RINY-KFLMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQV-FAKYN- 130
Query: 257 SVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLH-------TKL-LDTVAAKK 308
V RL K++ ++ L + + + T + LD + K
Sbjct: 131 ----VSRLQPYLKLRQALLE------LRPAKNV-----LIDGVLGSGKTWVALDVCLSYK 175
Query: 309 DETN----------GNTVDQPSVDMISPIEKLCVNFDT--LSLSSHSNGSPESNSSSVTS 356
+ N + P ++ ++KL D S S HS+ S
Sbjct: 176 VQCKMDFKIFWLNLKN-CNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 357 MSHLLIEKS 365
+ LL K
Sbjct: 234 LRRLLKSKP 242
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 45.9 bits (110), Expect = 3e-06
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
N D A P+H AA+ G ++ + L G A++ VR+ G+ P+D
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARL--DVRDAWGRLPVD 116
Score = 43.6 bits (104), Expect = 2e-05
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
L AA G VE V+ L+ A + N G+ P+
Sbjct: 13 ADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPI 49
Score = 40.9 bits (97), Expect = 1e-04
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 9/48 (18%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
++ D P+ A + G + + L G
Sbjct: 104 LDVRDAW-GRLPVDLAEELGHRDVARYLRAAAG-------GTRGSNHA 143
Score = 35.1 bits (82), Expect = 0.012
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKT-PLDSSSGLDLLE 293
N P+ P+ GS + L+ G A+ + + T P+ ++ E
Sbjct: 38 PNAPNSY-GRRPIQVMMM-GSARVAELLLLHG-AEP--NCADPATLTRPVHDAAR----E 88
Query: 294 NYLHT-KLLDTVAAKKDETN--GNT 315
+L T +L A+ D + G
Sbjct: 89 GFLDTLVVLHRAGARLDVRDAWGRL 113
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 47.0 bits (113), Expect = 3e-06
Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 38/153 (24%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
S + V L L++ G A V+ ++ D + +HE R +
Sbjct: 81 SWDCVNL--LLQHG--ASVQP---ES--------DLASPIHEAARRG---------HVEC 116
Query: 201 TEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDLYVNTPDKALN-ETPLHFA 252
L+ GN TP LL+ + ++ ++PLH
Sbjct: 117 VNSLIAYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLESGAD-VNQGKGQDSPLHAV 173
Query: 253 AKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLD 284
A+ S E L+ A Q +N EGK P++
Sbjct: 174 ARTASEELACLLMDFGADTQ--AKNAEGKRPVE 204
Score = 46.3 bits (111), Expect = 6e-06
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN + +PLH A G + CVK L+ A++ + + TPL
Sbjct: 29 VNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQV--NGVTADWHTPL 73
Score = 45.1 bits (108), Expect = 2e-05
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN TPL A GS +CV L+ A +Q + +P+
Sbjct: 62 VNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPI 105
Score = 40.9 bits (97), Expect = 4e-04
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+P+H AA G ++ LI + ++ + +PL
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAV--NIITADHVSPL 40
Score = 33.9 bits (79), Expect = 0.051
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 34/132 (25%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
+ VK L+E G ADV + + LH R + +
Sbjct: 146 QRACVKK--LLESG--ADVNQ---GK--------GQDSPLHAVARTASEEL--------- 181
Query: 201 TEMLLEIIGNPAFTNLLYDSDTPSYI--ERSDI--LLDLY---VNTPDKALNETPLHFAA 253
+L++ + N + P + S + L +
Sbjct: 182 ACLLMDFGADTQAKN--AEGKRPVELVPPESPLAQLFLEREGPPSLMQLC-RLRIRKCFG 238
Query: 254 KFGSVECVKRLI 265
+ K ++
Sbjct: 239 IQQHHKITKLVL 250
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 47.1 bits (112), Expect = 4e-06
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 29/144 (20%)
Query: 143 ELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 201
+ + L L++ +++ V + G ALH++ + N +
Sbjct: 71 DTIAL--LLDVARKTDSLKQFVNASYTDSYYKG-----------QTALHIAIERRNMTLV 117
Query: 202 EMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 261
+L+E N A + + +++ Y E PL AA + V
Sbjct: 118 TLLVE---NGADVQA---AANGDFFKKTKGRPGFY-------FGELPLSLAACTNQLAIV 164
Query: 262 KRLI--GCAKIQTSVRNKEGKTPL 283
K L+ S R+ G T L
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVL 188
Score = 44.4 bits (105), Expect = 3e-05
Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 41/142 (28%)
Query: 143 ELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 201
+VK L++ AD+ D+ G+ T+LH V +M
Sbjct: 162 AIVKF--LLQNSWQPADISAR--DS------VGN--TVLHALVEVADNTVDNTKFVTSMY 209
Query: 202 EMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 261
+L + ++ TPL AA G + +
Sbjct: 210 NEILILGAK-------------------LHPTLKLEEITNRK-GLTPLALAASSGKIGVL 249
Query: 262 KRLIGCAKIQTSVRNKEGKTPL 283
++ R
Sbjct: 250 AYILQ--------REIHEPECR 263
Score = 36.7 bits (85), Expect = 0.009
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 237 VNTPDKALNETPLHFA---AKFGSVECVKRLIGCAKIQTSVR----------NKEGKTPL 283
D +T L A G + + L+ A+ S++ +G+T L
Sbjct: 46 SEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105
Score = 32.4 bits (74), Expect = 0.17
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 240 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV-------RNKEGKTPL 283
P + + + A + + ++ L+ + + GKT L
Sbjct: 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCL 58
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 46.4 bits (111), Expect = 4e-06
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRN---KEGKTPL 283
V+ + ET LH AA + ++E L+ ++ EG+T L
Sbjct: 30 VHQRGA-MGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTAL 79
Score = 44.5 bits (106), Expect = 2e-05
Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 37/145 (25%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
+ E + L+E ++ + Y EG ALH++ N +
Sbjct: 49 NLEAAMV--LMEAA--PELVFEPMTSELY------------EG--QTALHIAVINQNVNL 90
Query: 201 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 260
LL A + R+ + Y E PL FAA GS E
Sbjct: 91 VRALLA---RGASVS-----------ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 261 VKRLI--GCAKIQTSVRNKEGKTPL 283
V+ LI G A I ++ G T L
Sbjct: 137 VRLLIEHG-ADI--RAQDSLGNTVL 158
Score = 41.1 bits (97), Expect = 2e-04
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
E+PL AAK V+ + +L+ + R G+T L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL 41
Score = 35.7 bits (83), Expect = 0.014
Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 40/125 (32%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
S+E+V+L LIE G AD+R D+ T+LH K M
Sbjct: 133 SEEIVRL--LIEHG--ADIRA--QDSLGN--------TVLHILILQP-----NKTFACQM 173
Query: 201 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 260
+LL L P+ TP A G++
Sbjct: 174 YNLLLSY--------------------DGGDHLKSLELVPNNQ-GLTPFKLAGVEGNIVM 212
Query: 261 VKRLI 265
+ L+
Sbjct: 213 FQHLM 217
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 46.9 bits (112), Expect = 5e-06
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
+ D+ +TP+ AA+ G +E V LI G A ++ + T + N
Sbjct: 306 KDKQDED-GKTPIMLAAQEGRIEVVMYLIQQG-ASVE--AVDATDHTARQLAQ----ANN 357
Query: 295 YLHT-KLLDTVAAKKD 309
+ + + D +++
Sbjct: 358 HHNIVDIFDRCRPERE 373
Score = 44.2 bits (105), Expect = 4e-05
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN D TPL A V L+ A + NK ++ L
Sbjct: 159 VNAMDCD-ENTPLMLAVLARRRRLVAYLMKAGADPT--IYNKSERSAL 203
Score = 43.8 bits (104), Expect = 5e-05
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDTV 304
T LH+AA+ ++ VK L+G ++++GKTP+ ++ E + L
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA----QEGRIEVVMYLIQQ 335
Query: 305 AAKKDETN--GNT 315
A + + +T
Sbjct: 336 GASVEAVDATDHT 348
Score = 43.0 bits (102), Expect = 1e-04
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV--RNKEGKTPLDSSSGLDLLEN 294
+K + LH AA + ++ K++ + ++ G T L + + +
Sbjct: 192 PTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250
Query: 295 YLHTKLL 301
KLL
Sbjct: 251 VASAKLL 257
Score = 38.4 bits (90), Expect = 0.003
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSV------RNKEGKTPL 283
+ P N T LH+ A S E + LI AK + + + TPL
Sbjct: 119 IIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170
Score = 38.0 bits (89), Expect = 0.003
Identities = 9/66 (13%), Positives = 13/66 (19%), Gaps = 2/66 (3%)
Query: 218 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK 277
S D + N + P G+ +I T
Sbjct: 35 TSSQHSLLEASYDGYIKRQRNELQHY-SLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEP 92
Query: 278 EGKTPL 283
E L
Sbjct: 93 ESPIKL 98
Score = 37.2 bits (87), Expect = 0.006
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
P+ + LH A GS + + I + + +T L
Sbjct: 87 PTEPEPE-SPIKLHTEAA-GSYAITEPITRESVNI---IDPRHNRTVL 129
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 46.3 bits (110), Expect = 6e-06
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 246 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
E PL AA V L G + ++ G T L
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Score = 39.4 bits (92), Expect = 0.001
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 33/126 (26%)
Query: 141 SQELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA 199
+V L E G AD+R+ D+ G+ T+LH
Sbjct: 152 QPHIVHY--LTENGHKQADLRR--QDS------RGN--TVLHALVAIADNTRENTKFVTK 199
Query: 200 MTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 259
M ++LL + + + +PL AAK G +
Sbjct: 200 MYDLLLI-----------KCAKLFPDTNLEAL--------LNND-GLSPLMMAAKTGKIG 239
Query: 260 CVKRLI 265
+ +I
Sbjct: 240 IFQHII 245
Score = 37.5 bits (87), Expect = 0.004
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 57/161 (35%)
Query: 151 IEKGNLADVRKLVWDNPRYLVSSG------DFP------TILHEGCRYNALHVSTKAVNP 198
+ +G+ + L+ +L++ +F T L L++S +
Sbjct: 13 VSRGSPDGLEGLL----SFLLTHKKRLTDEEFREPSTGKTCLP----KALLNLSAGRND- 63
Query: 199 AMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN---ETPLHFAAKF 255
+LL+I +N+P + + +T LH A +
Sbjct: 64 -TIPILLDIAEKTGNMREF-------------------INSPFRDVYYRGQTALHIAIER 103
Query: 256 GSVECVKRLI-------------GCAKIQTSVRNKEGKTPL 283
V+ L+ G+ PL
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144
Score = 32.4 bits (74), Expect = 0.19
Identities = 29/161 (18%), Positives = 45/161 (27%), Gaps = 54/161 (33%)
Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN---ALHVSTKAVN 197
+ V+L L+EKG ADV + + F G Y L ++
Sbjct: 105 CKHYVEL--LVEKG--ADV------HAQ--ARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 198 PAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG- 256
P + L E A D+ D N T LH
Sbjct: 153 PHIVHYLTENGHKQA-----------------DL------RRQDSRGN-TVLHALVAIAD 188
Query: 257 -SVECVKRLIGCAKI-------------QTSVRNKEGKTPL 283
+ E K + + ++ N +G +PL
Sbjct: 189 NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 45.1 bits (108), Expect = 6e-06
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDTV 304
TPL +A V+CVK L+ A ++ G +D + Y +++++
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDLAV----ALGYRSVQQVIESH 157
Query: 305 AAKKDETN 312
K +
Sbjct: 158 LLKLLQNI 165
Score = 44.3 bits (106), Expect = 1e-05
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N +H A G + + I I ++EG TPL
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPL 40
Score = 43.5 bits (104), Expect = 2e-05
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
K E+ L A G + VK L+ C + + G TPL
Sbjct: 62 PQLLGKG-RESALSLACSKGYTDIVKMLLDCGVDVN--EYDWNGGTPL 106
Score = 43.1 bits (103), Expect = 2e-05
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+N D+ TPL +AA G + V+ L+ G A + K ++ L
Sbjct: 29 INHTDEE-GFTPLMWAAAHGQIAVVEFLLQNG-ADP--QLLGKGRESAL 73
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 45.9 bits (110), Expect = 6e-06
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSGLDLLE-- 293
++ + ++PLH AA+ +CV + + + ++NKEG+TPL +S +
Sbjct: 170 LHAVNIH-GDSPLHIAARENRYDCVVLFLSRDSDVT--LKNKEGETPLQCASLNSQVWSA 226
Query: 294 NYLHTKLLDT 303
+ L D+
Sbjct: 227 LQMSKALQDS 236
Score = 45.5 bits (109), Expect = 9e-06
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
V+ D T LH AAK G E V+ L+ ++ + ++ G TP+
Sbjct: 70 VDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 45.1 bits (108), Expect = 1e-05
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
+ +PLH AA+ G V+ L+ A I +++ +TPL ++ N+
Sbjct: 4 FKMEHQN-KRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPLMEAA----ENNH 56
Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
L K L A D + G+T
Sbjct: 57 LEAVKYLIKAGALVDPKDAEGST 79
Score = 43.9 bits (105), Expect = 2e-05
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
+N D LH+AA G V+ + L+ + N G +PL ++ EN
Sbjct: 137 INIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDL--HAVNIHGDSPLHIAA----RENR 189
Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
L + + N G T
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGET 212
Score = 43.6 bits (104), Expect = 4e-05
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
VN D TP+ +A ++ V+ VK L+ + I +R+ E L ++
Sbjct: 104 VNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLHWAA----FSGC 156
Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
+ ++L N G++
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDS 179
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 43.9 bits (105), Expect = 7e-06
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDT 303
TPLH AA+ G +E VK L+ A + + ++K G+TPL ++ +L KLL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAA----RNGHLEVVKLLLE 56
Query: 304 VAAKKDETN--GNT 315
A + + G T
Sbjct: 57 AGADVNAKDKNGRT 70
Score = 42.3 bits (101), Expect = 2e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN DK TPLH AA+ G +E VK L+ A + + ++K G+TPL
Sbjct: 61 VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 105
Score = 34.6 bits (81), Expect = 0.011
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
VN DK TPLH AA+ G +E VK L+
Sbjct: 94 VNAKDKN-GRTPLHLAARNGHLEVVKLLL 121
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 45.9 bits (110), Expect = 7e-06
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSV--RNKEGKTPLDSSSGLDLLE 293
D+ +T H A + S C++ L+ A + RN +G T L +
Sbjct: 72 PMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV----NT 126
Query: 294 NYLHT-KLLDTVAA---KKDETNGNT 315
T +LL A D +G +
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRS 152
Score = 44.4 bits (106), Expect = 2e-05
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
++ + L +TPLH A V+ L+ A ++ G+T
Sbjct: 39 LDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAA 83
Score = 44.0 bits (105), Expect = 3e-05
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
++ D +PL A + S+ V+ L+ A + + G + L
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSAL 187
Score = 43.2 bits (103), Expect = 5e-05
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN + + LH A+ G + V+ L+ A S++N TPL
Sbjct: 176 VNAQMYS-GSSALHSASGRGLLPLVRTLVRSGADS--SLKNCHNDTPL 220
Score = 41.7 bits (99), Expect = 1e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-----AKIQTSVRNKEGKTPL 283
+TPLH A G++ V RL+ ++ + N +TPL
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPL 50
Score = 35.5 bits (83), Expect = 0.015
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
+ + N+TPL A ++ ++
Sbjct: 209 SSLKNCH-NDTPLMVARSRRVIDILRGKA 236
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 44.7 bits (107), Expect = 7e-06
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
VN D PLH AAK G + V+ L+ + + RN +G T D + L
Sbjct: 96 VNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLAR----LYG 148
Query: 295 YLHT-KLL 301
L+
Sbjct: 149 RNEVVSLM 156
Score = 42.8 bits (102), Expect = 3e-05
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
L AA G +E + L+ + + +N G+T L
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTAL 42
Score = 42.8 bits (102), Expect = 3e-05
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
+ D+ +H AA+ G ++ ++ L+ A + ++ + EG PL
Sbjct: 63 PDLKDRT-GFAVIHDAARAGFLDTLQTLLEFQADV--NIEDNEGNLPL 107
Score = 38.1 bits (90), Expect = 0.001
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN + T L G+ E +RL+ A ++++ G +
Sbjct: 31 VNAQNGF-GRTALQVMK-LGNPEIARRLLLRGANPD--LKDRTGFAVI 74
Score = 33.5 bits (78), Expect = 0.046
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 246 ETPLHFAAKFGSVECVKRLI 265
+T A +G E V +
Sbjct: 138 DTACDLARLYGRNEVVSLMQ 157
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 43.5 bits (104), Expect = 9e-06
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
VN K TPLH AAK G E VK L+ A + R+K+G TP + +
Sbjct: 35 VNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN--ARSKDGNTPEHLAK----KNGH 87
Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
KLLD A + + +
Sbjct: 88 HEIVKLLDAKGADVNARSWGSSH 110
Score = 42.4 bits (101), Expect = 2e-05
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 247 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
TP H A K G E VK L G A + + R+
Sbjct: 77 TPEHLAKKNGHHEIVKLLDAKG-ADV--NARSWGSSHHH 112
Score = 40.8 bits (97), Expect = 7e-05
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
TPLH AAK G E VK+L+ A + + R+K+G TPL
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPL 46
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 46.0 bits (110), Expect = 9e-06
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N + NE PLH AA + VK L+ S + +G T L
Sbjct: 57 KNLLE---NEFPLHQAATLEDTKIVKILLFSGLDD--SQFDDKGNTAL 99
Score = 44.4 bits (106), Expect = 2e-05
Identities = 5/49 (10%), Positives = 12/49 (24%), Gaps = 6/49 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+ K +T + A V V + + + +
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD----LAILLSCI 165
Score = 41.7 bits (99), Expect = 2e-04
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
D + ++A +V V L+ A E + PL
Sbjct: 24 TFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKNL----LENEFPL 66
Score = 41.7 bits (99), Expect = 2e-04
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
+ +H K G V+ + L+ T+ N P
Sbjct: 162 LSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPD 198
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEG-KTPLDSSSGLDLLE 293
+ D T L++A G+++ VK + ++ K G KT + +
Sbjct: 88 DSQFDD-KGNTALYYAVDSGNMQTVKLFVKKN-WRL--MFYGKTGWKTSFYHAV----ML 139
Query: 294 NYLHT--KLLDTVAAKKDETNGNT 315
N + L + + D +
Sbjct: 140 NDVSIVSYFLSEIPSTFDLAILLS 163
Score = 33.3 bits (77), Expect = 0.091
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
NT + L + A +E ++ L
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALF 215
Score = 32.9 bits (76), Expect = 0.11
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD 290
+ E K +I ++ + + ++ LD
Sbjct: 222 YSANLENVLLDDAEIAKMIIE-KHVEYKSDSYTKDLDIVKNNKLD 265
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 45.9 bits (110), Expect = 1e-05
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 19/88 (21%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDS---------S 286
+N D L +T LH AA G ++ + L+ + S+ + +G T S
Sbjct: 273 MNALDS-LGQTALHRAALAGHLQTCRLLLSYGSDP--SIISLQGFTAAQMGNEAVQQILS 329
Query: 287 SGLDLLENYLHTKLLDTVAAKKDETNGN 314
+ + + +LL A+K G+
Sbjct: 330 ESTPMRTSDVDYRLL--EASK----AGD 351
Score = 45.2 bits (108), Expect = 2e-05
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN +K TPLH AA+ + ++ L AK+ + + G+T L
Sbjct: 240 VNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKM--NALDSLGQTAL 284
Score = 45.2 bits (108), Expect = 2e-05
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLE 293
VN D TPLH AA VE L+ A ++ N GK+ +D + +L E
Sbjct: 117 VNAMDLW-QFTPLHEAASKNRVEVCSLLLSHGADP--TLVNCHGKSAVDMAPTPELRE 171
Score = 44.8 bits (107), Expect = 2e-05
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
V+ DK PLH A +G E + L+ A + + + TPL
Sbjct: 84 VHAKDKG-GLVPLHNACSYGHYEVTELLLKHGACV--NAMDLWQFTPL 128
Score = 44.4 bits (106), Expect = 3e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ D TPLH AA + V V+ L+ A + ++K G PL
Sbjct: 51 CHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPL 95
Score = 38.2 bits (90), Expect = 0.003
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 245 NETPLHFAAKFG---SVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+ET LH A + + L+ G A + + +NK+ TPL
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKG-ANV--NEKNKDFMTPL 251
Score = 35.9 bits (84), Expect = 0.017
Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 17/80 (21%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYL 296
+ ++ + A E + +G + L ++ DL +
Sbjct: 150 PTLVNCH-GKSAVDMAPTPELRERLTYEF------------KGHSLLQAAREADLAKV-- 194
Query: 297 HTKLLDTVAAKKDETN-GNT 315
K L + T
Sbjct: 195 -KKTLALEIINFKQPQSHET 213
Score = 33.6 bits (78), Expect = 0.088
Identities = 6/48 (12%), Positives = 11/48 (22%), Gaps = 3/48 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ + L A + + L + TPL
Sbjct: 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPL 62
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 44.3 bits (106), Expect = 1e-05
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSS 287
VN D L T LH+A + E V+ LI G A + ++K KT D S
Sbjct: 93 VNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADV--HTQSKFCKTAFDISI 141
Score = 42.0 bits (100), Expect = 5e-05
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ K + TPLH AA G V+ L+ A + + ++ T L
Sbjct: 60 RDARTKV-DRTPLHMAASEGHANIVEVLLKHGADV--NAKDMLKMTAL 104
Score = 42.0 bits (100), Expect = 5e-05
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
+PLH AA++G + L+ R K +TPL
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLRAGVSR--DARTKVDRTPL 71
Score = 40.8 bits (97), Expect = 1e-04
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
L AA+ G + V+ L+ A T + G +PL
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPL 38
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 44.3 bits (106), Expect = 1e-05
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
VN D TPLH AA G E K L+ G A + +N++G TPLD
Sbjct: 101 VNVADL-WKFTPLHEAAAKGKYEICKLLLQHG-ADP--TKKNRDGNTPLD 146
Score = 43.9 bits (105), Expect = 2e-05
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
+ L AAK G VE VK+L + TPL
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL 46
Score = 43.1 bits (103), Expect = 3e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ TPLHFAA + V V+ L+ A + ++K G PL
Sbjct: 35 CRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPL 79
Score = 40.8 bits (97), Expect = 1e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
V+ DK PLH A +G E + L+ G A + +V + TPL
Sbjct: 68 VHAKDKG-GLVPLHNACSYGHYEVAELLVKHG-AVV--NVADLWKFTPL 112
Score = 27.4 bits (62), Expect = 5.5
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 2/29 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
++ TPL G + L
Sbjct: 134 PTKKNRD-GNTPLDLVKD-GDTDIQDLLR 160
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 45.4 bits (107), Expect = 2e-05
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 29/99 (29%)
Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNET 247
LH++ K N A ++ II N ++ A T
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGH-----------------------LDAKA-ADGNT 228
Query: 248 PLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
LH+AA + +C+K L+ N+ G+T LD
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALD 264
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 42.0 bits (100), Expect = 2e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN DK TPLH AA+ G +E VK L+ A + + ++K G+TPL
Sbjct: 28 VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 72
Score = 41.2 bits (98), Expect = 3e-05
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
TPLH AA+ G +E VK L+ A + + ++K G+TPL
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 39
Score = 34.6 bits (81), Expect = 0.007
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 247 TPLHFAAKFGSVECVKRLI 265
TPLH AA+ G +E VK L+
Sbjct: 70 TPLHLAARNGHLEVVKLLL 88
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 44.8 bits (107), Expect = 2e-05
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
N D TPLH A + + LI R +G TPL
Sbjct: 83 ANIQDNM-GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Score = 44.0 bits (105), Expect = 3e-05
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
ET LH AA++ + KRL+ A ++++ G+TPL
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPL 94
Score = 42.8 bits (102), Expect = 7e-05
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
+ + ETPL AA+ GS E K L+ A + + + P D
Sbjct: 183 KDMQNNR-EETPLFLAAREGSYETAKVLLDHF-ANR--DITDHMDRLPRD 228
Score = 42.5 bits (101), Expect = 1e-04
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VN D ++ LH+AA +V+ L+ A ++N +TPL
Sbjct: 150 VNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPL 194
Score = 41.7 bits (99), Expect = 2e-04
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
TPL AA+ ++ LI A + + GK+ L
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSAL 161
Score = 33.2 bits (77), Expect = 0.10
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
+ D + P A + + V+ L
Sbjct: 216 RDITDHM-DRLPRDIAQERMHHDIVRLLD 243
Score = 32.8 bits (76), Expect = 0.14
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 18/62 (29%)
Query: 237 VNTPDKALNETPLHFAAKFG-------------SVECVKRLI--GCAKIQTSVRNKEGKT 281
VN TPL A+ G + + I G A + + ++ G+T
Sbjct: 3 VNVRGP-DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLH-NQTDRTGET 59
Query: 282 PL 283
L
Sbjct: 60 AL 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 43.9 bits (105), Expect = 2e-05
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 233 LDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
LD N D N TPL A G + +L+ K+ ++ EG T L
Sbjct: 24 LDFLRNYRDS-YNRTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTAL 72
Score = 41.6 bits (99), Expect = 1e-04
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSS 287
VN + ETPL A+K+G E VK+L+ G A I S R+ G T S+
Sbjct: 127 VNDRNL-EGETPLIVASKYGRSEIVKKLLELG-ADI--SARDLTGLTAEASAR 175
Score = 41.2 bits (98), Expect = 1e-04
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
VNT D +TPL ++ FG E L+ A + RN EG+TPL
Sbjct: 94 VNTKDF-SGKTPLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPL 138
Score = 39.7 bits (94), Expect = 5e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+ D T L +A K + ++L+ G + + + ++ GKTPL
Sbjct: 61 LEDKDIE-GSTALIWAVKNNRLGIAEKLLSKG-SNV--NTKDFSGKTPL 105
Score = 33.5 bits (78), Expect = 0.052
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 246 ETPLHFAAKFGSVECVKRLI 265
T A FG E +K
Sbjct: 168 LTAEASARIFGRQEVIKIFT 187
Score = 32.7 bits (76), Expect = 0.100
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 7/38 (18%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
E + + + L + R+ +TPL
Sbjct: 9 EIVEKIKDEKSINQNLDFLR-------NYRDSYNRTPL 39
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 44.0 bits (105), Expect = 2e-05
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+N ++ L AA+ G ++ VK L+ G I +N G T L
Sbjct: 99 LNKHNRY-GGNALIPAAEKGHIDNVKLLLEDGREDI--DFQNDFGYTAL 144
Score = 43.6 bits (104), Expect = 3e-05
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
+N + ++++P +A G E + ++ A + N+ G L
Sbjct: 65 INLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110
Score = 40.1 bits (95), Expect = 4e-04
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
V+ D TPL+ A +E K LI A I ++N +P + +
Sbjct: 32 VDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADIN--LQNSISDSPYLYAG----AQGR 84
Query: 296 LHT--KLLDTVAAKKDETN--GNT 315
+L ++ N G
Sbjct: 85 TEILAYMLKHATPDLNKHNRYGGN 108
Score = 39.4 bits (93), Expect = 6e-04
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
L A + + + + L ++ + EG TPL
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDE--VDTEGNTPL 43
Score = 34.3 bits (80), Expect = 0.033
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
+ D + T + +A + G E K L
Sbjct: 171 QSIKDNS-GRTAMDYANQKGYTEISKILA 198
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 44.3 bits (106), Expect = 2e-05
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
N D + TPLH A + + LI R +G TPL
Sbjct: 51 ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 96
Score = 43.2 bits (103), Expect = 4e-05
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
ET LH AA++ + KRL+ A ++++ G+TPL
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPL 62
Score = 42.8 bits (102), Expect = 6e-05
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
VN D ++ LH+AA +V+ L+ G A ++N +TPL
Sbjct: 118 VNAVDDL-GKSALHWAAAVNNVDAAVVLLKNG-ANK--DMQNNREETPL 162
Score = 42.8 bits (102), Expect = 7e-05
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
TPL AA+ ++ LI A + + + GK+ L
Sbjct: 93 TTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSAL 129
Score = 42.4 bits (101), Expect = 8e-05
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
+ + ETPL AA+ GS E K L+ A + + + P D
Sbjct: 151 KDMQNNR-EETPLFLAAREGSYETAKVLLDHF-ANR--DITDHMDRLPRD 196
Score = 33.5 bits (78), Expect = 0.068
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
+ D ++ P A + + V+ L
Sbjct: 184 RDITDH-MDRLPRDIAQERMHHDIVRLLD 211
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 44.9 bits (106), Expect = 2e-05
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 6/83 (7%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSG---LDLL 292
V N AA+ G + + RL ++ E ++ L +L
Sbjct: 121 VKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 179
Query: 293 ENYLHTKLLDTVAAKKDETNGNT 315
L A N
Sbjct: 180 N-RLCELAPTEATAMIQAENYYA 201
Score = 36.1 bits (83), Expect = 0.017
Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 12/130 (9%)
Query: 142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 201
L+ ++ + + ++ + +H+ + + V +
Sbjct: 216 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE- 274
Query: 202 EMLLEIIGNPAFTNLLYDSDTPSY------IERSDILLDLYVNTPDKALNETPLHFAAKF 255
+ G NL+ +D + I T N L A +
Sbjct: 275 ----CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN-ELLRLALRL 329
Query: 256 GSVECVKRLI 265
G+ L+
Sbjct: 330 GNQGACALLL 339
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 43.8 bits (104), Expect = 3e-05
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 244 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
L L ++ G + V+R+I S+ N EG T L
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITAL 74
Score = 43.0 bits (102), Expect = 5e-05
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 240 PDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT 298
P+ + L + + I +++ N L SS LE
Sbjct: 1 PEIT-GQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSS----LEGEFDL 52
Query: 299 -KLLDTVAAKKDETN--GNT 315
+ + N G T
Sbjct: 53 VQRIIYEVDDPSLPNDEGIT 72
Score = 41.8 bits (99), Expect = 1e-04
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
+ P+ T LH A G E VK L+ G + + + +G TPL ++ N
Sbjct: 63 PSLPNDE-GITALHNAVCAGHTEIVKFLVQFG-VNV--NAADSDGWTPLHCAA----SCN 114
Query: 295 YLHT-KLLDTVAAKKDETNGN 314
+ K L A +
Sbjct: 115 NVQVCKFLVESGAAVFAMTYS 135
Score = 41.4 bits (98), Expect = 2e-04
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
VN D TPLH AA +V+ K L+ G A + + + E
Sbjct: 96 VNAADSD-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM----EEG 150
Query: 295 YLHT-KLLDTVAAKKDETNGN 314
Y + L V K N
Sbjct: 151 YTQCSQFLYGVQEKMGIMNKG 171
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 43.4 bits (103), Expect = 4e-05
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
+ P++ T LH A + V LI A + + + G TPL ++ N
Sbjct: 47 PSQPNEE-GITALHNAICGANYSIVDFLITAGANV--NSPDSHGWTPLHCAA----SCND 99
Query: 296 LHT-KLLDTVAA---KKDETNGNT 315
L A ++G T
Sbjct: 100 TVICMALVQHGAAIFATTLSDGAT 123
Score = 43.4 bits (103), Expect = 4e-05
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
VN+PD TPLH AA L+ A I + +G T + E Y
Sbjct: 80 VNSPDS-HGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCD--PYREGY 135
Query: 296 LHT-KLLDTVAAKKDETN 312
L V N
Sbjct: 136 ADCATYLADVEQSMGLMN 153
Score = 43.0 bits (102), Expect = 5e-05
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 237 VNTPDKALN--ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+A L AA G +E V++ + S N+EG T L
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP--SQPNEEGITAL 58
Score = 29.2 bits (66), Expect = 1.7
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKR-LIGCAKIQTSVRNKEGKTPLD 284
V D ET +AA G V R G V+ + K
Sbjct: 181 VLRRDGP-EETDWWWAALHGQEGYVPRNYFGL---FPRVKPQRSKVKHH 225
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 43.8 bits (103), Expect = 4e-05
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 29/99 (29%)
Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNET 247
ALH++ ++V+ ++ ++ N ++ + T
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGN-----------------------LDKQTGKGS-T 207
Query: 248 PLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
LH+ + EC+K L+ + N+ G+TPLD
Sbjct: 208 ALHYCCLTDNAECLKLLLRGKA---SIEIANESGETPLD 243
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 42.7 bits (101), Expect = 5e-05
Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 30/154 (19%)
Query: 152 EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCR--YNALHVSTKAVNPAMTEMLLE--- 206
G D L G Y+ L + ++ L+
Sbjct: 15 MLGTYEDFL--------ELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66
Query: 207 ---IIGNPAFTNLLY-----DSDTPSYIERSDILLDL--YVNTPDKALNETPLHFAAKFG 256
T +D E I L+ + K + +
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFKNIFNY 125
Query: 257 SVECVKR------LIGCAKIQTSVRNKEGKTPLD 284
V+ + + + +Q +++K G T L+
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159
Score = 41.2 bits (97), Expect = 2e-04
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 32/137 (23%)
Query: 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTE 202
++ LI KG AD++ G T+ + + + +
Sbjct: 56 KISMF--LINKG--ADIKSR--TK------EGT--TLFFPLFQGGGNDI---TGTTELCK 98
Query: 203 MLLE------IIGNPAFTNLLY-----DSDTPSYIERSDILLD---LYVNTPDKALNETP 248
+ LE + P + D I ++ L + DK T
Sbjct: 99 IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW-GLTA 157
Query: 249 LHFAAKFGSVECVKRLI 265
L F + +K +
Sbjct: 158 LEFVKRCQKPIALKMME 174
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 22/117 (18%)
Query: 185 RYNALHVSTKAVNPAMTEMLLE----IIGNPAFTNLLYD----SDTPSYIERSDILLDL- 235
Y + + L E + +N+LYD ++ + + S L++
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 236 -YVNTPDKALNETPLHFAAKFG------SVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+ + K T + G + E K + G A I + K K +
Sbjct: 66 ADIKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADI--TALYKPYKIVV 118
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 42.0 bits (100), Expect = 6e-05
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDTV 304
L AA+ G + V+ L+ A + + + G TPL ++ +L ++L
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAA----FNGHLEIVEVLLKN 69
Query: 305 AAKKDETN--GNT 315
A + + G T
Sbjct: 70 GADVNAVDHAGMT 82
Score = 42.0 bits (100), Expect = 7e-05
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 246 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSS 287
TPLH AA FG +E V+ L+ G A + + ++K GKT D S
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNG-ADV--NAQDKFGKTAFDISI 154
Score = 42.0 bits (100), Expect = 7e-05
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
VN D + TPLH AA G +E V+ L+ A + + + G TPL ++ L +
Sbjct: 40 VNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADV--NAVDHAGMTPLRLAA----LFGH 92
Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
L ++L A + + G+T
Sbjct: 93 LEIVEVLLKNGADVNANDMEGHT 115
Score = 32.7 bits (76), Expect = 0.080
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
VN DK +T + G+ + + L
Sbjct: 139 VNAQDK-FGKTAFDISIDNGNEDLAEILQ 166
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 40.6 bits (96), Expect = 6e-05
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
L AA+ G + V+ L+ A + + ++K G TPL
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADV--AAKDKNGSTPL 61
Score = 39.1 bits (92), Expect = 3e-04
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSS 287
V DK TPLH AA+ G +E VK L+ G A + ++K GKT D S
Sbjct: 50 VAAKDKN-GSTPLHLAARNGHLEVVKLLLEAG-ADVXA--QDKFGKTAFDISI 98
Score = 27.9 bits (63), Expect = 2.1
Identities = 2/33 (6%), Positives = 7/33 (21%), Gaps = 6/33 (18%)
Query: 252 AAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ L+ + + + L
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM-----GSDLGKKL 28
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 40.8 bits (97), Expect = 9e-05
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
VN D+ TPL+ A G +E V+ L+ G A + + + G TPL
Sbjct: 40 VNAKDE-YGLTPLYLATAHGHLEIVEVLLKNG-ADV--NAVDAIGFTPL 84
Score = 40.8 bits (97), Expect = 1e-04
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
VN D TPLH AA G +E + L+ G A + + ++K GKT
Sbjct: 73 VNAVDAI-GFTPLHLAAFIGHLEIAEVLLKHG-ADV--NAQDKFGKTAF 117
Score = 40.8 bits (97), Expect = 1e-04
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
L AA+ G + V+ L+ A + + +++ G TPL
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPL 51
Score = 34.3 bits (80), Expect = 0.020
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
VN DK +T + G+ + + L
Sbjct: 106 VNAQDK-FGKTAFDISIGNGNEDLAEILQ 133
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 42.5 bits (100), Expect = 9e-05
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
D+ + T LH+A G E V+ L+ + ++ G +PL
Sbjct: 33 ATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPL 77
Score = 37.9 bits (88), Expect = 0.003
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
N + A E +R++ + + +++ +T L
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLA--TRTDQDSRTAL 44
Score = 37.5 bits (87), Expect = 0.004
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYL 296
VN D A +PLH AA G E VK L+ + N+ G TPL ++ + E
Sbjct: 66 VNDKDDA-GWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEI-- 121
Query: 297 HTKLLDTVAAKKDETNGN 314
+L A D +
Sbjct: 122 -AVMLLEGGANPDAKDHY 138
Score = 36.4 bits (84), Expect = 0.009
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 186 YNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLYVNTP 240
LH + + MLLE NP + ++ + ++ ILL +T
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 241 DKALN-ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG 288
+ TPLH A VE K L+ + NKE KTPL + G
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKG 214
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 39.9 bits (93), Expect = 0.001
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 247 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
T LH+AA + +C+K L+ N+ G+T LD
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALD 245
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 38.6 bits (89), Expect = 0.002
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
VN D A PLH A G + G R+ EG+ PL
Sbjct: 261 VNQADSA-GRGPLHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLT 306
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal
domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP:
d.100.1.2
Length = 47
Score = 31.9 bits (73), Expect = 0.026
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 60 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 91
+++ E + +K F +++ A++F
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU;
2.10A {Homo sapiens}
Length = 53
Score = 31.5 bits (72), Expect = 0.039
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 60 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 91
VF E + + RFK F +A F
Sbjct: 16 VFLTWNECRAQVDRFPAARFKKFATEDEAWAF 47
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown
function ATU1810, ontario centre for ST proteomics,
OCSP; NMR {Agrobacterium tumefaciens str}
Length = 106
Score = 31.2 bits (71), Expect = 0.13
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 23/54 (42%)
Query: 61 FDNKEEALLFIKKN-----------KKIRFKSFRNFQDAQNFAY-------HGS 96
F+ +E+A + ++ + S+ NF + HGS
Sbjct: 58 FETQEQAEAYAQRKGIEYRVILPKEATRKVVSY-----TDNFRFNRTQPWTHGS 106
>2lju_A Putative oxidoreductase; structural genomics, seattle structural
GENO center for infectious disease, ssgcid; NMR
{Ehrlichia chaffeensis}
Length = 108
Score = 30.1 bits (68), Expect = 0.33
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 16/44 (36%)
Query: 61 FDNKEEALLFIKKN-----------KKIRFKSFRNFQDAQNFAY 93
F +E A+ + + + I KS+ A NF
Sbjct: 66 FTTRELAIAYAVAHKIDYTVLQDNPRTIVPKSY-----ADNFTK 104
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide;
multiprotein complex, nucleotidyltransferase, nuclear
protein, hypothetical protein; 3.2A {Saccharomyces
cerevisiae}
Length = 218
Score = 30.1 bits (67), Expect = 1.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 29 SEGTEEGIY-------FAVYIPSELLG-GYENEFSECERVFDNKEEALLFIKKNKKIRFK 80
S+ T EGI ++IP +L G E ++ EE L+ N+KIRF+
Sbjct: 90 SKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFR 149
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme,
TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A*
3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Length = 746
Score = 28.3 bits (62), Expect = 4.8
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 106 APASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEK---GNLADVRKL 162
P+ P + PS P ++ F L +EL + + + +L D +
Sbjct: 17 HPSLPPRCPSRSPSDQPWTH----PDQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQA 72
Query: 163 -VWDNPRYLVS 172
DN + V
Sbjct: 73 RPSDNCVFSVE 83
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine
oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN;
2.45A {Emericella nidulans}
Length = 797
Score = 28.4 bits (62), Expect = 5.4
Identities = 12/71 (16%), Positives = 17/71 (23%), Gaps = 4/71 (5%)
Query: 106 APASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKG---NLADVRKL 162
S A K + + L E + K + NL
Sbjct: 38 THQSRPYTNEYASPCQITPPQEIKAPKENVWYGLTDDETADVAKWLFGRPELNLTTTENA 97
Query: 163 -VWDNPRYLVS 172
WDN L+
Sbjct: 98 GEWDNTIALIE 108
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide;
transcription, nucleotidyltransferase; 2.70A {Homo
sapiens} SCOP: b.40.4.5 d.230.1.1
Length = 172
Score = 26.8 bits (59), Expect = 9.9
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 32 TEEGIY-----FAVYIPSELLG-GYENEFSECERVFDNKEEALLFIKKNKKIRFK 80
+ G++ + +I + E + + + +E + I+++ +IR K
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDI-VIQQDDEIRLK 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,236,210
Number of extensions: 306102
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 263
Length of query: 367
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,049,298
Effective search space: 1101409056
Effective search space used: 1101409056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (25.8 bits)