RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4222
(367 letters)
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 51.6 bits (122), Expect = 5e-08
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 16/121 (13%)
Query: 178 TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDI------ 231
TILH + + + A + ++ I+ ++ S +
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238
Query: 232 --------LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
++ +N D +T L+ AA+ G++ V L+ + NK G P+
Sbjct: 239 LENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPV 296
Query: 284 D 284
D
Sbjct: 297 D 297
Score = 39.3 bits (90), Expect = 5e-04
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 208 IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 265
+ +F +LL + + + L +N P TPLH+ ++E VK L+
Sbjct: 76 QQHVSFDSLLQE------VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 127
Score = 26.2 bits (56), Expect = 6.3
Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 11/111 (9%)
Query: 153 KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA 212
G A + + ++V + P + + + ++ E L
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250
Query: 213 FTNLL-YDSDTP-------SYIERSDILLDLY--VNTPDKALNETPLHFAA 253
N + DT I D LLD +K+ P+ F A
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS-GLRPVDFGA 300
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 49.6 bits (117), Expect = 2e-07
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 186 YNALHVSTKAVNPAMTEMLLE----------IIGNPAFTNLLYDSDTPSYIERSDILLDL 235
AL + + + + ++LL+ +G A + L SD + +LLD
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 236 --YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
VN + +TPL A + + V+RL+ I+ + + +GKT L
Sbjct: 209 GADVNVRGER-GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
Score = 38.0 bits (87), Expect = 0.001
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 17/125 (13%)
Query: 151 IEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN 210
EKG++ ++ L+ D V++ D + + A+T +LL+ +
Sbjct: 156 AEKGHVEVLKILL-DEMGADVNACDNMGRNALIHALLSSD---DSDVEAITHLLLDHGAD 211
Query: 211 PAFTNLLYDSDTP-------SYIERSDILLDLY---VNTPDKALNETPLHFAAKFGSVEC 260
TP ++ LL+ +N D +T L A + +
Sbjct: 212 VNVRG--ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD-GKTALLLAVELKLKKI 268
Query: 261 VKRLI 265
+ L
Sbjct: 269 AELLC 273
Score = 36.1 bits (82), Expect = 0.005
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 267
VN ++ TPLH A + + V+ L+
Sbjct: 31 VNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Score = 35.7 bits (81), Expect = 0.005
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ L A + V+ V++L+ A + + G TPL
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPL 43
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 48.8 bits (115), Expect = 5e-07
Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 23/237 (9%)
Query: 61 FDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA 120
+ A L ++++ +H + + LL SP + +
Sbjct: 142 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 201
Query: 121 LPQMSSLAAAEKPSPFKSLKSQELVK-------LRKLIEKGNLADVRKLVWDNPRYLVSS 173
L + E + L ++G+ V L+ + +
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 261
Query: 174 GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLE------IIGNPAFTNLLYDSDTPSYIE 227
T LH + + + ++L++ +T L S +
Sbjct: 262 KSGLTPLHLVAQEG---------HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 312
Query: 228 RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
+L L +PLH AA+ G + V L+ + + +G TPL
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLA 368
Score = 45.0 bits (105), Expect = 9e-06
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
N + ETPLH AA+ G E K L+ K + + + K+ +TPL
Sbjct: 26 PNVSNVK-VETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPL 70
Score = 44.6 bits (104), Expect = 1e-05
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
TPLH A+ G + VK L+ +V N + +TPL
Sbjct: 2 TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPL 37
Score = 36.5 bits (83), Expect = 0.004
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVN 238
LHV++ + + + LL+ +P +N +TP + E + LL VN
Sbjct: 3 PLHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVN 60
Query: 239 TPDKALNETPLHFAAKFGSVECVKRLI 265
K ++TPLH AA+ G VK L+
Sbjct: 61 AKAKD-DQTPLHCAARIGHTNMVKLLL 86
Score = 33.0 bits (74), Expect = 0.056
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 13/110 (11%)
Query: 164 WDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP 223
L+ G Y LHV++ N + + LL+ + +P
Sbjct: 277 VPVADVLIKHGVMVDATTRMG-YTPLHVASHYGNIKLVKFLLQHQADVNAKT--KLGYSP 333
Query: 224 -------SYIERSDILLDL--YVNTPDKALNETPLHFAAKFGSVECVKRL 264
+ + +LL N TPL A + G + L
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGASPNEVSSD-GTTPLAIAKRLGYISVTDVL 382
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 47.9 bits (112), Expect = 5e-07
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
PLH A V+ L+ ++++G+ PL
Sbjct: 2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 38
Score = 39.4 bits (90), Expect = 3e-04
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
TPL A G + L+ + + + +G D
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 211
Score = 27.1 bits (58), Expect = 2.8
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 237 VNTPDKALNETPLHFAAKFGSVEC 260
+ D+ PLH++ F + E
Sbjct: 27 LLQKDQD-GRIPLHWSVSFQAHEI 49
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 47.4 bits (111), Expect = 8e-07
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 246 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
+T LH A + L+ ++N G+T L
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49
Score = 36.2 bits (82), Expect = 0.004
Identities = 17/173 (9%), Positives = 37/173 (21%), Gaps = 14/173 (8%)
Query: 93 YHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIE 152
+ LL+ S + Q + + P+ S + E + + +
Sbjct: 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146
Query: 153 KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA 212
+ P ++ ++ A + L +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 213 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 265
LL + TPL A + + L
Sbjct: 207 VLELL-------------LKAGADPTARMYG-GRTPLGSALLRPNPILARLLR 245
Score = 33.1 bits (74), Expect = 0.039
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDT 303
TPLH A + + ++ L+ A + R G+TPL S+ L +LL
Sbjct: 192 GRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSAL----LRPNPILARLLRA 246
Query: 304 VAAKKDE 310
A + E
Sbjct: 247 HGAPEPE 253
Score = 30.1 bits (66), Expect = 0.34
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 24/75 (32%)
Query: 186 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN 245
ALH++ + + LL Y++ + L
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHE-----------------------YLDLQND-LG 45
Query: 246 ETPLHFAAKFGSVEC 260
+T LH AA G
Sbjct: 46 QTALHLAAILGEAST 60
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 47.4 bits (111), Expect = 1e-06
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD--SSSGLDLLE------NYL 296
TPLH AA +G E + L+ NK G+T D L LE N L
Sbjct: 232 GWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Query: 297 H 297
H
Sbjct: 291 H 291
Score = 35.5 bits (80), Expect = 0.007
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
+ A G E V RL+ A I + N +G T L
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTAL 77
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 46.4 bits (108), Expect = 2e-06
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLIGC---AKIQTSVRNKEGKTPL 283
+TPLH A G++ V RL+ + + N +TPL
Sbjct: 4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 44
Score = 37.1 bits (84), Expect = 0.002
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 248 PLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
LH A+ G + V+ L+ + +S++N TPL
Sbjct: 180 ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLM 215
Score = 34.1 bits (76), Expect = 0.015
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVK 262
+ + N+TPL A ++ ++
Sbjct: 203 SSLKNCH-NDTPLMVARSRRVIDILR 227
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 44.7 bits (104), Expect = 8e-06
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 232 LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-------AKIQTSVRNKEGKTPLD 284
+ VN D N T LH+ A S E + LI A + + + TPL
Sbjct: 20 ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79
Query: 285 SSSGLDLLENYLHT 298
+ +
Sbjct: 80 LAVLARRRRLVAYL 93
Score = 44.0 bits (102), Expect = 1e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLD 284
+TP+ AA+ G +E V LI A + + T
Sbjct: 221 GKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTARQ 259
Score = 36.6 bits (83), Expect = 0.003
Identities = 6/31 (19%), Positives = 7/31 (22%), Gaps = 1/31 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 267
V D + T A V C
Sbjct: 247 VEAVDAT-DHTARQLAQANNHHNIVDIFDRC 276
Score = 32.0 bits (71), Expect = 0.093
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVA 305
E+P+ + + I + + + +T L + E ++ L
Sbjct: 1 ESPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEK---SEDLIVHE 56
Query: 306 AKKDETNGNTVDQPSVDMISPIEKLCVNFDT 336
AK+ G V+ D +P+ +
Sbjct: 57 AKECIAAGADVNAMDCDENTPLMLAVLARRR 87
Score = 26.6 bits (57), Expect = 4.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
T LH+AA+ ++ VK L+G ++++GKTP+
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 225
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 41.4 bits (96), Expect = 1e-04
Identities = 26/195 (13%), Positives = 46/195 (23%), Gaps = 16/195 (8%)
Query: 131 EKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDN--PRYLVSSGDFPTILHEGCRYNA 188
E + + L + N + L + +L + + + C Y A
Sbjct: 11 ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA 70
Query: 189 LHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL-----YVNTPDKA 243
+ + G + + T D L L V A
Sbjct: 71 HYNRNAKQLWSD----AHKKGIKSEVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQ-A 124
Query: 244 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLEN--YLHTKL 300
N AA+ G + + RL ++ E ++ L L
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 184
Query: 301 LDTVAAKKDETNGNT 315
A N
Sbjct: 185 PTEATAMIQAENYYA 199
Score = 36.0 bits (82), Expect = 0.006
Identities = 25/214 (11%), Positives = 52/214 (24%), Gaps = 23/214 (10%)
Query: 68 LLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSL 127
L + + + N+ + A +G V L E + +T + +
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204
Query: 128 AAAEKPSPFKSLKSQELVKLRKLI---EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGC 184
+ L ++ I E G + R +
Sbjct: 205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL----KEMHDAFKLSN 260
Query: 185 RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKAL 244
+ TK+ + G NL+ +D ++ LL +
Sbjct: 261 PDGVFDLVTKSEC---------LQGFYMLRNLIRRNDE-VLLDDIRFLLSIPGIKALAPT 310
Query: 245 N------ETPLHFAAKFGSVECVKRLIGCAKIQT 272
L A + G+ L+ +
Sbjct: 311 ATIPGDANELLRLALRLGNQGACALLLSIPSVLA 344
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 40.7 bits (94), Expect = 1e-04
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 147 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVSTKAVNPAMTEML 204
+ L G L ++++ + + L + D T LH C + + +
Sbjct: 7 VCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN- 64
Query: 205 LEIIGNPAFTNLLYDSDTPSYIERSDILLDL--YVNTPDKALNETPLHFAAKFGSVECVK 262
+ A + L+ + + E LL VN ++ TPLH+AA E
Sbjct: 65 ---DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAV 120
Query: 263 RLIGCAKIQTSVRNKEGKTPL 283
L+ ++ T +
Sbjct: 121 MLLE-GGANPDAKDHYEATAM 140
Score = 36.9 bits (84), Expect = 0.002
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 7/105 (6%)
Query: 186 YNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLYVNTP 240
LH + + MLLE NP + ++ + ++ ILL +T
Sbjct: 104 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 163
Query: 241 DKALN-ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
+ TPLH A VE K L+ + NKE KTPL
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLV-SQGASIYIENKEEKTPLQ 207
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 39.5 bits (90), Expect = 3e-04
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 246 ETPLHFAAKFGSVECVKRLI---GCAKIQTSVRNKEGKTPL 283
++ LH A +I + +N +TPL
Sbjct: 3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43
Score = 38.0 bits (86), Expect = 8e-04
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 245 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSS 287
+P S ++L + + E + D+ S
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 221
Score = 34.1 bits (76), Expect = 0.017
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVA 305
T LH A + + V L+ + +G +P + G + L +
Sbjct: 146 RTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPSTRI---QQQLGQLT 201
Query: 306 AKKDETNGNTVDQPSVDMIS 325
+ + + D+ S D S
Sbjct: 202 LENLQMLPESEDEESYDTES 221
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 38.0 bits (87), Expect = 4e-04
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVST 193
+++K++++ L + G D+ + +++G P T LH R
Sbjct: 11 CEAVKTRDIFGLLQAYADG--VDL------TEKIPLANGHEPDETALHLAVRSVDRT--- 59
Query: 194 KAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN------ET 247
+ + + L++ GN + + + ++ ET
Sbjct: 60 ---SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 116
Query: 248 PLHFAAKFGSVECVKRLI 265
PL A + C + L
Sbjct: 117 PLDIAKRLKHEHCEELLT 134
>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 34.2 bits (79), Expect = 0.001
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 60 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 91
+++ E + +K F +++ A++F
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 37.1 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 267
+N ET LH AA+F + KRL+
Sbjct: 15 LNATMDKTGETSLHLAARFARADAAKRLLDA 45
Score = 35.9 bits (81), Expect = 0.005
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 217 LYDSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRL 264
L+ + E S LLD + D + P A++ + V+ L
Sbjct: 160 LFLAAREGSYEASKALLDNFANREITDHM-DRLPRDVASERLHHDIVRLL 208
Score = 30.5 bits (67), Expect = 0.22
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
+ETPL AA+ GS E K L+ + + + P D
Sbjct: 156 DETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRD 194
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 36.4 bits (82), Expect = 0.002
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 236 YVNTPDKALNETPLHFAAKFGSVECVKRLI 265
V + +T A +G E V +
Sbjct: 125 NVGHRNHK-GDTACDLARLYGRNEVVSLMQ 153
Score = 33.7 bits (75), Expect = 0.014
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 247 TPLHFAAKFGSVECVKRLI 265
L AA G +E + L+
Sbjct: 3 NELASAAARGDLEQLTSLL 21
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 35.6 bits (80), Expect = 0.002
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 246 ETPLHFAAKFGSVECVKRLI 265
+ +A K G ++ VK +
Sbjct: 3 DKEFMWALKNGDLDEVKDYV 22
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 35.9 bits (81), Expect = 0.002
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG 266
++ D TPL A + G+ + V L G
Sbjct: 126 LHRRDAR-GLTPLELALQRGAQDLVDILQG 154
Score = 35.9 bits (81), Expect = 0.003
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
L AA G V+ V+RL+ + N+ GKT
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 35.6 bits (80), Expect = 0.003
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 247 TPLHFAAKFGSVECVKRLI 265
L AA+ G + V+ L+
Sbjct: 4 KKLLEAARAGQDDEVRILM 22
Score = 34.8 bits (78), Expect = 0.006
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRL 264
V+T K +T + G+ + + L
Sbjct: 126 VHTQSKF-CKTAFDISIDNGNEDLAEIL 152
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 34.9 bits (78), Expect = 0.004
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 245 NETPLHFAAKFGSVECVKRLIGCA 268
P+ A + G + + L A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125
Score = 34.5 bits (77), Expect = 0.005
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 245 NETPLHFAAKFGSVECVKRLIGC 267
+ L AA G VE V+ L+
Sbjct: 3 SADWLATAAARGRVEEVRALLEA 25
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 30.4 bits (67), Expect = 0.15
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 9/45 (20%)
Query: 237 VNTPDKALNETP--LHFAAKFGSVECVKRLIGCAKIQTSVRNKEG 279
V + +T + G +C + L V+ K G
Sbjct: 93 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-------GVQEKMG 130
Score = 29.6 bits (65), Expect = 0.29
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 247 TPLHFAAKFGSVECVKRLI 265
L ++ G + V+R+I
Sbjct: 3 ALLLDSSLEGEFDLVQRII 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0395 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,263,944
Number of extensions: 57229
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 53
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.1 bits)