BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4226
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172
E CA+C+E +KP D + I PCKH +H+ C+ WL + CP+C M +L+
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMD 169
C +C+ ++ ++R+LPC HE+H C+D WL +RTCP+C+ D
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 117 KEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
+E G G C +C E Y + VR LPC H +H +CI PWL +H +CP+C+ +
Sbjct: 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 122 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDIL 171
DG CA+C+ + + R LP C H +H C+D WL H TCP+C++ ++
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
C IC+ + + VR LPC H +H+ C+D WL+ ++ CP+C++DI
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 99 AAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 158
A+K+++ +P + ED G CC IC Y D+ LPC H +HK C+ WL
Sbjct: 17 ASKESIDALPEILVT-EDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75
Query: 159 EHRTCPMCK 167
+ TCP+C+
Sbjct: 76 KSGTCPVCR 84
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 114 GEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
G K+++ + ECC IC++ +D+ ILPC H + + CID W HR CP+C++ +
Sbjct: 7 GRVKQLTDEEECC-ICMDGR--ADL--ILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
E C IC+E PS+ LPC H + CI W+ ++ TCP+CK+ +
Sbjct: 5 AERCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 126 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWLLEHRTCPMC 166
C IC+E S +V +LPC H H+ C + L E CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 36.6 bits (83), Expect = 0.008, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 126 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWLLEHRTCPMC 166
C IC+E S +V +LPC H H+ C + L E CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL-KHYGFV 177
C IC E++ + L C H + CI+ W+ CP+C+ DI K Y V
Sbjct: 56 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV 105
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL-KHYGFV 177
C IC E++ + L C H + CI+ W+ CP+C+ DI K Y V
Sbjct: 56 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV 105
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL-KHYGFV 177
C IC E++ + L C H + CI+ W+ CP+C+ DI K Y V
Sbjct: 67 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV 116
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 134 KPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171
K D V + C H +H C+ W+ ++ CP+C+ D +
Sbjct: 37 KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 108 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 160
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 313 PQDHIKVTQEQFELXCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 369
Query: 161 RTCPMCKMDI 170
+ CP C+ +I
Sbjct: 370 QGCPFCRCEI 379
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 108 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 160
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 311 PQDHIKVTQEQYELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 367
Query: 161 RTCPMCKMDI 170
+ CP C+ +I
Sbjct: 368 QGCPFCRCEI 377
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 108 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 160
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 313 PQDHIKVTQEQYELXCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 369
Query: 161 RTCPMCKMDI 170
+ CP C+ +I
Sbjct: 370 QGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 108 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 160
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 311 PQDHIKVTQEQYELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 367
Query: 161 RTCPMCKMDI 170
+ CP C+ +I
Sbjct: 368 QGCPFCRCEI 377
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.0 bits (66), Expect = 0.74, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPW---LLEHRTCPMC 166
C++C+E+ K I+ C H + K CI W L CP+C
Sbjct: 18 CSVCLEYLKEPVIIE---CGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 126 CAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMC 166
C IC E++ +I I+P C H Y CI +L CP C
Sbjct: 25 CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172
C +C ++ D I+ C H + K CI +L + CP+C + + K
Sbjct: 18 CVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172
C +C ++ D I+ C H + K CI +L + CP+C + + K
Sbjct: 18 CVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172
C +C ++ D I+ C H + K CI +L + CP+C + + K
Sbjct: 14 CVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 58
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 108 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 160
P HIK + E+ + C IC E K V+I PC H +C+ W +
Sbjct: 317 PHDHIKVTQEQYELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTAWQESDG 373
Query: 161 RTCPMCKMDI 170
+ CP C+ +I
Sbjct: 374 QGCPFCRCEI 383
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 170
C IC E K V+I PC H +C+ W E + CP C+ +I
Sbjct: 30 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 170
C IC E K V+I PC H +C+ W E + CP C+ +I
Sbjct: 27 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 144 CKHEYHKNCIDPWLLEHRTCPM 165
C H +H +CI WL + CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 144 CKHEYHKNCIDPWLLEHRTCPM 165
C H +H +CI WL + CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 144 CKHEYHKNCIDPWLLEHRTCPM 165
C H +H +CI WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 144 CKHEYHKNCIDPWLLEHRTCPM 165
C H +H +CI WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 144 CKHEYHKNCIDPWLLEHRTCPM 165
C H +H +CI WL + CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 144 CKHEYHKNCIDPWLLEHRTCPM 165
C H +H +CI WL + CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 144 CKHEYHKNCIDPWLLEHRTCPM 165
C H +H +CI WL + CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 170
C IC E K V+I PC H +C+ W + + CP C+ +I
Sbjct: 29 CKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKMDILKH 173
C IC+E K + C H + K C+ L + + CP+CK DI K
Sbjct: 24 CPICLELIKEPVSTK---CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,386,466
Number of Sequences: 62578
Number of extensions: 208567
Number of successful extensions: 417
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 52
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)